Citrus Sinensis ID: 024474
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 267 | 2.2.26 [Sep-21-2011] | |||||||
| Q54XX1 | 290 | Signal recognition partic | yes | no | 0.730 | 0.672 | 0.323 | 7e-26 | |
| P47758 | 269 | Signal recognition partic | yes | no | 0.715 | 0.710 | 0.353 | 2e-22 | |
| Q9Y5M8 | 271 | Signal recognition partic | yes | no | 0.707 | 0.697 | 0.358 | 4e-22 | |
| Q4FZX7 | 269 | Signal recognition partic | yes | no | 0.715 | 0.710 | 0.348 | 6e-22 | |
| P36057 | 244 | Signal recognition partic | yes | no | 0.812 | 0.889 | 0.301 | 1e-12 | |
| Q52NJ3 | 198 | GTP-binding protein SAR1a | no | no | 0.475 | 0.641 | 0.289 | 7e-08 | |
| Q3T0D7 | 198 | GTP-binding protein SAR1a | no | no | 0.475 | 0.641 | 0.289 | 7e-08 | |
| Q9CQC9 | 198 | GTP-binding protein SAR1b | no | no | 0.475 | 0.641 | 0.289 | 3e-07 | |
| Q5R548 | 198 | GTP-binding protein SAR1a | no | no | 0.475 | 0.641 | 0.289 | 3e-07 | |
| Q9NR31 | 198 | GTP-binding protein SAR1a | no | no | 0.475 | 0.641 | 0.289 | 3e-07 |
| >sp|Q54XX1|SRPRB_DICDI Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 15/210 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K+ I + GLS +GKT L L + T TS+ N ++ ++ K + ++
Sbjct: 83 KRGVNIAILGLSNAGKTALLLNLTNVDKKISTHTSITTNNGVYITENK------KKLPII 136
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
DVPG+ + + L + L +A I++V+D F+ N + ++YLYDILTN +V +KKIPVL+
Sbjct: 137 DVPGNGKAKASLPKILSNSACIIYVIDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVLV 196
Query: 182 CCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA----VSEADVTNDFTLGIPGQAFSFSQ 237
NK D + E ++ +E+E+D LR +R A + + + D LGI G F F
Sbjct: 197 FNNKMDLDSTIDTEQVKNILERELDDLRRTRGATPIVLGQEEDKKDIYLGIEGTPFQFDH 256
Query: 238 CHNKV-----SVAEASGLTGEISQVEQFIR 262
N V S + ++G EI ++ FI+
Sbjct: 257 LPNDVQFSNGSASPSNGELKEIDDIKNFIQ 286
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Dictyostelium discoideum (taxid: 44689) |
| >sp|P47758|SRPRB_MOUSE Signal recognition particle receptor subunit beta OS=Mus musculus GN=Srprb PE=1 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 107/201 (53%), Gaps = 10/201 (4%)
Query: 58 VFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIK 116
++ RK S VL GL SGKT+LF +L G ++ T TS+ + + +++ +
Sbjct: 55 IWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDSSAIYKVNNN----RGN 109
Query: 117 PVHLVDVPGHSRLRPKL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKK 175
+ L+D+PGH LR +L D F A +VFVVD+ F +E+LY +L +S +K
Sbjct: 110 SLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN 169
Query: 176 KIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQA 232
+LI CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+
Sbjct: 170 SPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKE 229
Query: 233 FSFSQCHNKVSVAEASGLTGE 253
F FSQ KV E S G
Sbjct: 230 FEFSQLPLKVEFLECSAKGGR 250
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Mus musculus (taxid: 10090) |
| >sp|Q9Y5M8|SRPRB_HUMAN Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 103/198 (52%), Gaps = 9/198 (4%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
RR ++L GL SGKT+LF +L G ++ T TS+ + V + +G +
Sbjct: 60 RRSSQRAVLLVGLCDSGKTLLFVRLLTG-LYRDTQTSI--TDSCAVYRVNNNRGN--SLT 114
Query: 120 LVDVPGHSRLRPK-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 178
L+D+PGH LR + L+ F A IVFVVD+ F +E+LY +L +S +K
Sbjct: 115 LIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPS 174
Query: 179 VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQAFSF 235
LI CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+ F F
Sbjct: 175 FLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEF 234
Query: 236 SQCHNKVSVAEASGLTGE 253
SQ KV E S G
Sbjct: 235 SQLPLKVEFLECSAKGGR 252
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Homo sapiens (taxid: 9606) |
| >sp|Q4FZX7|SRPRB_RAT Signal recognition particle receptor subunit beta OS=Rattus norvegicus GN=Srprb PE=2 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 106/201 (52%), Gaps = 10/201 (4%)
Query: 58 VFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIK 116
++ RK S VL GL SGKT+LF +L G ++ T TS+ + + +++ +
Sbjct: 55 IWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDSSAIYKVNNN----RGN 109
Query: 117 PVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKK 175
+ L+D+PGH LR + LD F A +VFVVD+ F +E+LY +L +S +K
Sbjct: 110 SLTLIDLPGHESLRLQFLDRFKSSARAVVFVVDSATFQREVKDVAEFLYQVLIDSMALKN 169
Query: 176 KIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQA 232
L+ CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+
Sbjct: 170 TPAFLVACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKE 229
Query: 233 FSFSQCHNKVSVAEASGLTGE 253
F FSQ KV E S G
Sbjct: 230 FEFSQLPLKVEFLECSAKGGR 250
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Rattus norvegicus (taxid: 10116) |
| >sp|P36057|SRPB_YEAST Signal recognition particle receptor subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP102 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 116/249 (46%), Gaps = 32/249 (12%)
Query: 39 LYIACAVLLLTTALLLLLQ-------VFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ 91
L IAC +++ TT L+ +Q + ++ +I++AG SGKT L L S
Sbjct: 6 LIIACLLVIGTTIALIAVQKASSKTGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP 65
Query: 92 GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA----GIVFVV 147
TV S EP L + G V LVD PGH +LR KL ++L A G++F+V
Sbjct: 66 -TVVSQEP------LSAADYDGS--GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV 116
Query: 148 DALEFLPNCSAASEYLYDILT-NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206
D+ + +E+L DIL+ + + I +LI CNK++ TA I+ +E EI
Sbjct: 117 DSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ 176
Query: 207 KLRASRS--------AVSEADVTNDFTLGI--PGQAFSFSQCHNKVSVAEASGLTGEISQ 256
K+ R ++E D + TL + F F+ V E S +ISQ
Sbjct: 177 KVIERRKKSLNEVERKINEEDYAEN-TLDVLQSTDGFKFANLEASVVAFEGSINKRKISQ 235
Query: 257 VEQFIREQV 265
++I E++
Sbjct: 236 WREWIDEKL 244
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q52NJ3|SAR1A_PIG GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + P + L ++T+ T+ +P+LI
Sbjct: 75 DLGGHEQARRVWKNYLPAINGIVFLVDCADH-PRLMESKVELNALMTDETI--SNVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRTDAISEEKLRE 149
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Sus scrofa (taxid: 9823) |
| >sp|Q3T0D7|SAR1A_BOVIN GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + P + L ++T+ T+ +P+LI
Sbjct: 75 DLGGHEQARRVWKNYLPAINGIVFLVDCADH-PRLMESKVELNALMTDETI--SNVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRTDAISEEKLRE 149
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Bos taurus (taxid: 9913) |
| >sp|Q9CQC9|SAR1B_MOUSE GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHVQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRPEAISEERLRE 149
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex. Mus musculus (taxid: 10090) |
| >sp|Q5R548|SAR1A_PONAB GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE-LNALMTDETI--SNVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRTDAISEEKLRE 149
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Pongo abelii (taxid: 9601) |
| >sp|Q9NR31|SAR1A_HUMAN GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE-LNALMTDETI--SNVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRTDAISEEKLRE 149
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus (By similarity). Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 267 | ||||||
| 255568852 | 259 | Signal recognition particle receptor sub | 0.962 | 0.992 | 0.802 | 1e-114 | |
| 359473203 | 259 | PREDICTED: signal recognition particle r | 0.955 | 0.984 | 0.765 | 1e-114 | |
| 356497639 | 259 | PREDICTED: signal recognition particle r | 0.958 | 0.988 | 0.743 | 1e-112 | |
| 224061989 | 258 | predicted protein [Populus trichocarpa] | 0.958 | 0.992 | 0.782 | 1e-112 | |
| 449434947 | 266 | PREDICTED: signal recognition particle r | 0.958 | 0.962 | 0.768 | 1e-112 | |
| 356497641 | 260 | PREDICTED: signal recognition particle r | 0.951 | 0.976 | 0.745 | 1e-112 | |
| 449478588 | 266 | PREDICTED: signal recognition particle r | 0.958 | 0.962 | 0.765 | 1e-112 | |
| 307135965 | 266 | signal recognition particle receptor sub | 0.958 | 0.962 | 0.772 | 1e-111 | |
| 356502028 | 259 | PREDICTED: signal recognition particle r | 0.958 | 0.988 | 0.743 | 1e-110 | |
| 297810667 | 260 | signal recognition particle binding prot | 0.962 | 0.988 | 0.772 | 1e-109 |
| >gi|255568852|ref|XP_002525397.1| Signal recognition particle receptor subunit beta, putative [Ricinus communis] gi|223535360|gb|EEF37035.1| Signal recognition particle receptor subunit beta, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/258 (80%), Positives = 226/258 (87%), Gaps = 1/258 (0%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLA 70
EG+EQWK E ++WL +GIEF NQIPP QLY A AVLL+TT LL+++ FRR KS TIVL
Sbjct: 2 EGVEQWKNEAKQWLQQGIEFANQIPPAQLYAAAAVLLITTLFLLIIRFFRRTKSNTIVLT 61
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-STKGKIKPVHLVDVPGHSRL 129
GLSGSGKTVLFYQLRDGS+HQGTVTSME NE TF+LHSE S KGK+KPVH VDVPGHSRL
Sbjct: 62 GLSGSGKTVLFYQLRDGSSHQGTVTSMEQNEGTFILHSENSKKGKLKPVHFVDVPGHSRL 121
Query: 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189
R KLDEFLPQAAGIVFVVDALEFLPN SEYLYDILT ++VVK+KIPVLICCNKTDKV
Sbjct: 122 RSKLDEFLPQAAGIVFVVDALEFLPNLRGVSEYLYDILTKASVVKRKIPVLICCNKTDKV 181
Query: 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG 249
TAHTKEFIRKQ+EKEIDKLRASRS +SEAD+ NDFTLGIPG+ FSFS C NKV+VAE SG
Sbjct: 182 TAHTKEFIRKQLEKEIDKLRASRSGISEADIANDFTLGIPGEPFSFSHCSNKVTVAECSG 241
Query: 250 LTGEISQVEQFIREQVKP 267
LTGE SQVEQFIRE VKP
Sbjct: 242 LTGETSQVEQFIREHVKP 259
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473203|ref|XP_002265544.2| PREDICTED: signal recognition particle receptor subunit beta-like [Vitis vinifera] gi|297739076|emb|CBI28565.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/256 (76%), Positives = 228/256 (89%), Gaps = 1/256 (0%)
Query: 13 MEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGL 72
+EQW+ +L++W +G E+ +Q+P TQLY A AV+ +TT LL +++F+R KS T+VL GL
Sbjct: 4 LEQWRIQLQQWSRQGAEWFHQMPETQLYAAIAVVFVTTFFLLSIRLFKRTKSNTVVLTGL 63
Query: 73 SGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-STKGKIKPVHLVDVPGHSRLRP 131
SGSGKT LFYQL+DGS+H GTVTSM+PNE TFVLHSE + KGKIKPVH+VDVPGHSRLRP
Sbjct: 64 SGSGKTTLFYQLQDGSSHLGTVTSMDPNEGTFVLHSEIAKKGKIKPVHVVDVPGHSRLRP 123
Query: 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191
KLDEFLPQAAGIVFVVDALEFLPNC AASEYLYDILT S+VVKKKIPVLI CNKTDKVTA
Sbjct: 124 KLDEFLPQAAGIVFVVDALEFLPNCRAASEYLYDILTKSSVVKKKIPVLILCNKTDKVTA 183
Query: 192 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT 251
HTKEFIRKQ+EKEI+K RASRSA+S ADV N+FTLG+PG+AF FSQCHNKV+VA+ASGLT
Sbjct: 184 HTKEFIRKQLEKEIEKFRASRSAISAADVVNEFTLGVPGEAFGFSQCHNKVTVADASGLT 243
Query: 252 GEISQVEQFIREQVKP 267
GEISQ+E+FIRE VKP
Sbjct: 244 GEISQLEEFIREYVKP 259
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497639|ref|XP_003517667.1| PREDICTED: signal recognition particle receptor subunit beta-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/257 (74%), Positives = 227/257 (88%), Gaps = 1/257 (0%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLA 70
E +EQWK++L + N ++ + ++PP QLY A A+++ TT LLL +++F+R KS T+VLA
Sbjct: 2 EELEQWKEQLSHFANLALDRLLEVPPNQLYAAAAIVIFTTLLLLSIRLFKRAKSNTVVLA 61
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRL 129
GLSGSGKTV+FYQLRDGSTHQGTVTSMEPNE TF+LH+E T KGKIKPVH+VDVPGHSRL
Sbjct: 62 GLSGSGKTVIFYQLRDGSTHQGTVTSMEPNEGTFILHNEKTRKGKIKPVHVVDVPGHSRL 121
Query: 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189
RPKLDE+LPQAAGIVFVVDAL+FLPNC AASEYLYD+LT +VV+KKIPVLI CNKTDKV
Sbjct: 122 RPKLDEYLPQAAGIVFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPVLILCNKTDKV 181
Query: 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG 249
TAHTKEFIRKQMEKEIDKLRASRSA+S AD+ N+FTLG+PG+ F F+QC NKV+ A+ASG
Sbjct: 182 TAHTKEFIRKQMEKEIDKLRASRSAISAADIANEFTLGVPGEPFFFTQCSNKVTTADASG 241
Query: 250 LTGEISQVEQFIREQVK 266
LTGEISQ+E+FIRE VK
Sbjct: 242 LTGEISQLEEFIREHVK 258
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061989|ref|XP_002300699.1| predicted protein [Populus trichocarpa] gi|222842425|gb|EEE79972.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/257 (78%), Positives = 231/257 (89%), Gaps = 1/257 (0%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLA 70
EG+EQWK E ++WL +GIE+ +Q+PPTQLY A AVLL TT LLL +++ +R KS TIVL+
Sbjct: 2 EGIEQWKTEAQQWLQQGIEYAHQLPPTQLYAAVAVLLFTTLLLLTIRLLKRTKSNTIVLS 61
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSRL 129
GLSGSGKTVLFYQLRDGS+HQGTVTSMEPNE TF+LHSES K GKIKPVH+VDVPGHSRL
Sbjct: 62 GLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFLLHSESAKKGKIKPVHVVDVPGHSRL 121
Query: 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189
RPKLD+FLPQAAGIVFVVDALEFLPN SA +EYLYDILT ++VVK+K+PVLICCNKTDKV
Sbjct: 122 RPKLDDFLPQAAGIVFVVDALEFLPNLSAVTEYLYDILTKASVVKRKLPVLICCNKTDKV 181
Query: 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG 249
TAHTKEFIRKQ+EKEI+KLR SRS VS+AD+ ND+TLGIPG+ FSFSQC NKV++ EASG
Sbjct: 182 TAHTKEFIRKQLEKEIEKLRVSRSGVSDADIANDYTLGIPGEVFSFSQCINKVTIGEASG 241
Query: 250 LTGEISQVEQFIREQVK 266
LTGEISQVE+FIR VK
Sbjct: 242 LTGEISQVEEFIRAHVK 258
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434947|ref|XP_004135257.1| PREDICTED: signal recognition particle receptor subunit beta-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/264 (76%), Positives = 233/264 (88%), Gaps = 8/264 (3%)
Query: 11 EGMEQWKKE-------LEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKK 63
EG EQWK + +E+WL +G+EF++QIPP QLY+ VLL TT LLL ++F+R+K
Sbjct: 2 EGTEQWKVQVEQLKVQMEQWLEQGLEFVHQIPPIQLYVGVGVLLFTTLLLLFTRLFKRRK 61
Query: 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-STKGKIKPVHLVD 122
S TIVL+GLSGSGKT+LFYQLRDGS+HQGTVTSMEPNE TFVLHSE + K K+KPVHLVD
Sbjct: 62 SNTIVLSGLSGSGKTILFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIAKKDKLKPVHLVD 121
Query: 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182
VPGHSRLR KLD+FLPQAAG+VFVVDAL+FLPNC AASEYLYDILTN++VVKKKIPVLI
Sbjct: 122 VPGHSRLRAKLDDFLPQAAGVVFVVDALDFLPNCRAASEYLYDILTNASVVKKKIPVLIL 181
Query: 183 CNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV 242
CNKTDKVTAHTKEFI +QMEKEIDKLR SRSA+S AD+ NDFTLGIPG+AFSF+QCHNKV
Sbjct: 182 CNKTDKVTAHTKEFINRQMEKEIDKLRVSRSAISAADIANDFTLGIPGKAFSFTQCHNKV 241
Query: 243 SVAEASGLTGEISQVEQFIREQVK 266
+VAEASGLTGE+S+VEQFIRE VK
Sbjct: 242 AVAEASGLTGEVSEVEQFIRENVK 265
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497641|ref|XP_003517668.1| PREDICTED: signal recognition particle receptor subunit beta-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/255 (74%), Positives = 226/255 (88%), Gaps = 1/255 (0%)
Query: 13 MEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGL 72
+EQWK++L + N ++ + ++PP QLY A A+++ TT LLL +++F+R KS T+VLAGL
Sbjct: 5 LEQWKEQLSHFANLALDRLLEVPPNQLYAAAAIVIFTTLLLLSIRLFKRAKSNTVVLAGL 64
Query: 73 SGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRP 131
SGSGKTV+FYQLRDGSTHQGTVTSMEPNE TF+LH+E T KGKIKPVH+VDVPGHSRLRP
Sbjct: 65 SGSGKTVIFYQLRDGSTHQGTVTSMEPNEGTFILHNEKTRKGKIKPVHVVDVPGHSRLRP 124
Query: 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191
KLDE+LPQAAGIVFVVDAL+FLPNC AASEYLYD+LT +VV+KKIPVLI CNKTDKVTA
Sbjct: 125 KLDEYLPQAAGIVFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPVLILCNKTDKVTA 184
Query: 192 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT 251
HTKEFIRKQMEKEIDKLRASRSA+S AD+ N+FTLG+PG+ F F+QC NKV+ A+ASGLT
Sbjct: 185 HTKEFIRKQMEKEIDKLRASRSAISAADIANEFTLGVPGEPFFFTQCSNKVTTADASGLT 244
Query: 252 GEISQVEQFIREQVK 266
GEISQ+E+FIRE VK
Sbjct: 245 GEISQLEEFIREHVK 259
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478588|ref|XP_004155361.1| PREDICTED: signal recognition particle receptor subunit beta-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/264 (76%), Positives = 233/264 (88%), Gaps = 8/264 (3%)
Query: 11 EGMEQWKKE-------LEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKK 63
EG EQWK + +E+WL +G++F++QIPP QLY+ VLL TT LLL ++F+R+K
Sbjct: 2 EGTEQWKVQVEQLKVQMEQWLEQGLQFVHQIPPIQLYVGVGVLLFTTLLLLFTRLFKRRK 61
Query: 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-STKGKIKPVHLVD 122
S TIVL+GLSGSGKT+LFYQLRDGS+HQGTVTSMEPNE TFVLHSE + K K+KPVHLVD
Sbjct: 62 SNTIVLSGLSGSGKTILFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIAKKDKLKPVHLVD 121
Query: 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182
VPGHSRLR KLD+FLPQAAG+VFVVDAL+FLPNC AASEYLYDILTN++VVKKKIPVLI
Sbjct: 122 VPGHSRLRAKLDDFLPQAAGVVFVVDALDFLPNCRAASEYLYDILTNASVVKKKIPVLIL 181
Query: 183 CNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV 242
CNKTDKVTAHTKEFI +QMEKEIDKLR SRSA+S AD+ NDFTLGIPG+AFSF+QCHNKV
Sbjct: 182 CNKTDKVTAHTKEFINRQMEKEIDKLRVSRSAISAADIANDFTLGIPGKAFSFTQCHNKV 241
Query: 243 SVAEASGLTGEISQVEQFIREQVK 266
+VAEASGLTGE+S+VEQFIRE VK
Sbjct: 242 AVAEASGLTGEVSEVEQFIRENVK 265
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307135965|gb|ADN33824.1| signal recognition particle receptor subunit beta [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/264 (77%), Positives = 235/264 (89%), Gaps = 8/264 (3%)
Query: 11 EGMEQWKKE-------LEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKK 63
EG EQWK + +E+WL RG+EF++QIPP QLY+ VLL TT LLLL ++F+R+K
Sbjct: 2 EGTEQWKVQVEQLKVQMEQWLERGLEFVHQIPPIQLYVGVGVLLFTTLLLLLTRLFKRRK 61
Query: 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-STKGKIKPVHLVD 122
S TIVL+GLSGSGKT+LFYQLRDGS+HQGTVTSMEPNE TFVLHSE + K K+KPVHLVD
Sbjct: 62 SNTIVLSGLSGSGKTILFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIAKKDKLKPVHLVD 121
Query: 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182
VPGHSRLR KLD+FLPQAAG+VFVVDAL+FLPNC AASEYLYDILTN++VVKKKIPVLI
Sbjct: 122 VPGHSRLRAKLDDFLPQAAGVVFVVDALDFLPNCRAASEYLYDILTNASVVKKKIPVLIL 181
Query: 183 CNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV 242
CNKTDKVTAHTKEFI +QMEKEIDKLR SRSA+S AD++NDFTLGIPG+AFSF+QC+NKV
Sbjct: 182 CNKTDKVTAHTKEFINRQMEKEIDKLRVSRSAISTADISNDFTLGIPGKAFSFTQCYNKV 241
Query: 243 SVAEASGLTGEISQVEQFIREQVK 266
+VAEASGLTGE+S+VEQFIRE VK
Sbjct: 242 AVAEASGLTGEVSEVEQFIRENVK 265
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502028|ref|XP_003519824.1| PREDICTED: signal recognition particle receptor subunit beta-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/257 (74%), Positives = 226/257 (87%), Gaps = 1/257 (0%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLA 70
E +EQWK++L + N ++ + ++PP QLY A A+ + TT LLL +++F+R KS TIVL
Sbjct: 2 EELEQWKEQLSHFANLALDRLREVPPNQLYAAAAIAIFTTLLLLSIRLFKRAKSNTIVLT 61
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRL 129
GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNE TF+LH+E T KGKIKPVH+VDVPGHSRL
Sbjct: 62 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILHNEKTRKGKIKPVHVVDVPGHSRL 121
Query: 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189
RPKLDE+LPQAAG+VFVVDAL+FLPNC AASEYLYD+LT +VV+KKIP+LI CNKTDKV
Sbjct: 122 RPKLDEYLPQAAGVVFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPMLILCNKTDKV 181
Query: 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG 249
TAHTKEFIRKQMEKEIDKLRASRSA+S AD+ N+FTLG+PG+ FSF+QC NKV+ A+ASG
Sbjct: 182 TAHTKEFIRKQMEKEIDKLRASRSAISAADIANEFTLGVPGEPFSFTQCSNKVTTADASG 241
Query: 250 LTGEISQVEQFIREQVK 266
LTGEISQ+E+FIRE VK
Sbjct: 242 LTGEISQLEEFIREHVK 258
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810667|ref|XP_002873217.1| signal recognition particle binding protein [Arabidopsis lyrata subsp. lyrata] gi|297319054|gb|EFH49476.1| signal recognition particle binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/259 (77%), Positives = 226/259 (87%), Gaps = 2/259 (0%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLL-LQVFRRKKSTTIVL 69
E +E K E+W ++GIE++ +IPPTQLY A VLL TT LL L +++ RR KS T++L
Sbjct: 2 ENLEDLKILAEQWSHQGIEYLQKIPPTQLYAAIGVLLFTTILLFLSIRLVRRTKSNTVLL 61
Query: 70 AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSR 128
+GLSGSGKTVLFYQLRDGS+HQGTVTSMEPNE TFVLHSE+TK GKIKPVHLVDVPGHSR
Sbjct: 62 SGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSENTKKGKIKPVHLVDVPGHSR 121
Query: 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188
LRPKL+EFLPQAA IVFVVDALEFLPNC AASEYLYDILTN+ VVKKKIPVL+CCNKTDK
Sbjct: 122 LRPKLEEFLPQAAAIVFVVDALEFLPNCRAASEYLYDILTNANVVKKKIPVLLCCNKTDK 181
Query: 189 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS 248
+TAHTKEFIRKQMEKEI+KLRASRSAVS AD+ NDFT+GI G+ FSFS C NKV+VAEAS
Sbjct: 182 LTAHTKEFIRKQMEKEIEKLRASRSAVSTADIANDFTIGIEGEVFSFSHCSNKVTVAEAS 241
Query: 249 GLTGEISQVEQFIREQVKP 267
GLTGE Q+E FIRE +KP
Sbjct: 242 GLTGETVQIEDFIREYIKP 260
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 267 | ||||||
| TAIR|locus:2166409 | 260 | AT5G05670 "AT5G05670" [Arabido | 0.962 | 0.988 | 0.729 | 4.5e-98 | |
| TAIR|locus:2054022 | 260 | AT2G18770 "AT2G18770" [Arabido | 0.962 | 0.988 | 0.698 | 7.6e-96 | |
| UNIPROTKB|Q5ZJA5 | 258 | Gga.31975 "Uncharacterized pro | 0.704 | 0.728 | 0.38 | 7.4e-27 | |
| DICTYBASE|DDB_G0278543 | 290 | srpRB "signal recognition part | 0.715 | 0.658 | 0.339 | 1.8e-25 | |
| MGI|MGI:102964 | 269 | Srprb "signal recognition part | 0.812 | 0.806 | 0.343 | 4.6e-25 | |
| RGD|1304698 | 269 | Srprb "signal recognition part | 0.812 | 0.806 | 0.343 | 4.6e-25 | |
| UNIPROTKB|F1NL17 | 963 | Gga.31975 "Uncharacterized pro | 0.704 | 0.195 | 0.38 | 2.1e-24 | |
| UNIPROTKB|Q9Y5M8 | 271 | SRPRB "Signal recognition part | 0.835 | 0.822 | 0.331 | 5.3e-24 | |
| UNIPROTKB|F1LMP2 | 979 | Tf "Serotransferrin" [Rattus n | 0.812 | 0.221 | 0.343 | 8.2e-24 | |
| UNIPROTKB|F1MLG1 | 271 | LOC100138613 "Uncharacterized | 0.812 | 0.800 | 0.334 | 2.9e-23 |
| TAIR|locus:2166409 AT5G05670 "AT5G05670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 189/259 (72%), Positives = 217/259 (83%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVXXXXXXXXXXX-QVFRRKKSTTIVL 69
E +E K E+W ++GIE++ +IPP QLY A V ++ RR KS T++L
Sbjct: 2 ENLEDLKILAEQWSHQGIEYLQKIPPNQLYAAIGVLLFTTILLFLSIRLVRRTKSNTVLL 61
Query: 70 AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSR 128
+GL+GSGKTVLFYQLRDGS+HQGTVTSMEPNE TFVLHSE+TK GKIKPVHLVDVPGHSR
Sbjct: 62 SGLTGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSENTKKGKIKPVHLVDVPGHSR 121
Query: 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188
LRPKL+EFLPQAA IVFVVDALEFLPNC AASEYLY+ILTN+ VVKKKIPVL+CCNKTDK
Sbjct: 122 LRPKLEEFLPQAAAIVFVVDALEFLPNCRAASEYLYEILTNANVVKKKIPVLLCCNKTDK 181
Query: 189 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS 248
+TAHTKEFIRKQMEKEI+KLRASRSAVS AD+ NDFT+GI G+ FSF+ C NKV+VAEAS
Sbjct: 182 LTAHTKEFIRKQMEKEIEKLRASRSAVSTADIANDFTIGIEGEVFSFTHCSNKVTVAEAS 241
Query: 249 GLTGEISQVEQFIREQVKP 267
GLTGE Q+E FIRE +KP
Sbjct: 242 GLTGETIQIEDFIREYIKP 260
|
|
| TAIR|locus:2054022 AT2G18770 "AT2G18770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 181/259 (69%), Positives = 212/259 (81%)
Query: 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSTTIVLA 70
+ +E K E+W +G+EF+ +IPP QLY A V ++FRR KS T++L+
Sbjct: 2 DNLEDLKIVAEQWSKQGLEFVQKIPPPQLYTAIGVLLLATIWLLSIRLFRRTKSNTVLLS 61
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSR 128
GLSGSGKTVLFYQLRDGS+HQG VTSMEPNE TFVLH+E+ KGK+KPVHL+DVPGHSR
Sbjct: 62 GLSGSGKTVLFYQLRDGSSHQGAVTSMEPNEGTFVLHNENNTKKGKVKPVHLIDVPGHSR 121
Query: 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188
L KL+E+LP+AA +VFVVDALEFLPN AASEYLYDILTN++V+K K PVL+CCNKTDK
Sbjct: 122 LISKLEEYLPRAAAVVFVVDALEFLPNIRAASEYLYDILTNASVIKNKTPVLLCCNKTDK 181
Query: 189 VTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS 248
VTAHTKEFIRKQMEKEIDKLR SRSA+S AD+ NDFTLGI G+ FSFS CHNKV+VAEAS
Sbjct: 182 VTAHTKEFIRKQMEKEIDKLRVSRSAISTADIANDFTLGIEGEVFSFSHCHNKVTVAEAS 241
Query: 249 GLTGEISQVEQFIREQVKP 267
GLTGE QV++FIRE VKP
Sbjct: 242 GLTGETDQVQEFIREHVKP 260
|
|
| UNIPROTKB|Q5ZJA5 Gga.31975 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 76/200 (38%), Positives = 109/200 (54%)
Query: 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHL 120
R ++L GL +GKT+LF +L G ++ T TS+ + + V + KG V L
Sbjct: 47 RSTRRAVLLLGLCDAGKTLLFARLLTGR-YRDTQTSI--TDSSAVYRVSNDKGT--NVTL 101
Query: 121 VDVPGHSRLRPK-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
+D+PGH LR + L+ F A IVFVVD++ F +E+LY +L +STV+K +
Sbjct: 102 IDLPGHESLRLQFLERFKAAARAIVFVVDSVAFQREVKDVAEFLYQVLVDSTVLKNAPAL 161
Query: 180 LICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTND-FTLGIPGQAFSF 235
LI CNK D A + + I++Q+EKE++ LR +RSA +A T LG G+ F F
Sbjct: 162 LIACNKQDVTMAKSAKLIQQQLEKELNTLRVTRSAAPTSLDASATGGPAQLGKKGKDFDF 221
Query: 236 SQCHNKVSVAEAS--GLTGE 253
SQ KV E S G GE
Sbjct: 222 SQLPMKVEFVECSARGSKGE 241
|
|
| DICTYBASE|DDB_G0278543 srpRB "signal recognition particle receptor beta subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 69/203 (33%), Positives = 109/203 (53%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K+ I + GLS +GKT L L + T TS+ N ++ T+ K K + ++
Sbjct: 83 KRGVNIAILGLSNAGKTALLLNLTNVDKKISTHTSITTNNGVYI-----TENK-KKLPII 136
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
DVPG+ + + L + L +A I++V+D F+ N + ++YLYDILTN +V +KKIPVL+
Sbjct: 137 DVPGNGKAKASLPKILSNSACIIYVIDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVLV 196
Query: 182 CCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA----VSEADVTNDFTLGIPGQAFSFSQ 237
NK D + E ++ +E+E+D LR +R A + + + D LGI G F F
Sbjct: 197 FNNKMDLDSTIDTEQVKNILERELDDLRRTRGATPIVLGQEEDKKDIYLGIEGTPFQFDH 256
Query: 238 CHNKV--SVAEASGLTGEISQVE 258
N V S AS GE+ +++
Sbjct: 257 LPNDVQFSNGSASPSNGELKEID 279
|
|
| MGI|MGI:102964 Srprb "signal recognition particle receptor, B subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 78/227 (34%), Positives = 116/227 (51%)
Query: 31 INQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGST 89
+ Q PT L +A A+ ++ RK S VL GL SGKT+LF +L G
Sbjct: 28 LQQRDPTLLSVAVALLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ- 86
Query: 90 HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL-DEFLPQAAGIVFVVD 148
++ T TS+ + + + + +G + L+D+PGH LR +L D F A +VFVVD
Sbjct: 87 YRDTQTSI--TDSSAIYKVNNNRGN--SLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD 142
Query: 149 ALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208
+ F +E+LY +L +S +K +LI CNK D A + + I++Q+EKE++ L
Sbjct: 143 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTL 202
Query: 209 RASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG 252
R +RSA ++ T LG G+ F FSQ KV E S G
Sbjct: 203 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGG 249
|
|
| RGD|1304698 Srprb "signal recognition particle receptor, B subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 78/227 (34%), Positives = 115/227 (50%)
Query: 31 INQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGST 89
+ Q PT L +A AV ++ RK S VL GL SGKT+LF +L G
Sbjct: 28 LQQRDPTLLSVAVAVLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ- 86
Query: 90 HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVVD 148
++ T TS+ + + + + +G + L+D+PGH LR + LD F A +VFVVD
Sbjct: 87 YRDTQTSI--TDSSAIYKVNNNRGN--SLTLIDLPGHESLRLQFLDRFKSSARAVVFVVD 142
Query: 149 ALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208
+ F +E+LY +L +S +K L+ CNK D A + + I++Q+EKE++ L
Sbjct: 143 SATFQREVKDVAEFLYQVLIDSMALKNTPAFLVACNKQDIAMAKSAKLIQQQLEKELNTL 202
Query: 209 RASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG 252
R +RSA ++ T LG G+ F FSQ KV E S G
Sbjct: 203 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGG 249
|
|
| UNIPROTKB|F1NL17 Gga.31975 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 76/200 (38%), Positives = 109/200 (54%)
Query: 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHL 120
R ++L GL +GKT+LF +L G ++ T TS+ + + V + KG V L
Sbjct: 752 RSTRRAVLLLGLCDAGKTLLFARLLTGR-YRDTQTSI--TDSSAVYRVSNDKGT--NVTL 806
Query: 121 VDVPGHSRLRPK-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
+D+PGH LR + L+ F A IVFVVD++ F +E+LY +L +STV+K +
Sbjct: 807 IDLPGHESLRLQFLERFKAAARAIVFVVDSVAFQREVKDVAEFLYQVLVDSTVLKNAPAL 866
Query: 180 LICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTND-FTLGIPGQAFSF 235
LI CNK D A + + I++Q+EKE++ LR +RSA +A T LG G+ F F
Sbjct: 867 LIACNKQDVTMAKSAKLIQQQLEKELNTLRVTRSAAPTSLDASATGGPAQLGKKGKDFDF 926
Query: 236 SQCHNKVSVAEAS--GLTGE 253
SQ KV E S G GE
Sbjct: 927 SQLPMKVEFVECSARGSKGE 946
|
|
| UNIPROTKB|Q9Y5M8 SRPRB "Signal recognition particle receptor subunit beta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 78/235 (33%), Positives = 116/235 (49%)
Query: 31 INQIPPTQLYIACAVXXXXXXXXXXXQV-FRRKKSTTIVLAGLSGSGKTVLFYQLRDGST 89
+ Q PT L + AV + RR ++L GL SGKT+LF +L G
Sbjct: 30 LQQTDPTLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTG-L 88
Query: 90 HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVVD 148
++ T TS+ + V + +G + L+D+PGH LR + L+ F A IVFVVD
Sbjct: 89 YRDTQTSI--TDSCAVYRVNNNRGN--SLTLIDLPGHESLRLQFLERFKSSARAIVFVVD 144
Query: 149 ALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208
+ F +E+LY +L +S +K LI CNK D A + + I++Q+EKE++ L
Sbjct: 145 SAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTL 204
Query: 209 RASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS--GLTGEISQVE 258
R +RSA ++ T LG G+ F FSQ KV E S G G++ +
Sbjct: 205 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSAD 259
|
|
| UNIPROTKB|F1LMP2 Tf "Serotransferrin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 8.2e-24, P = 8.2e-24
Identities = 78/227 (34%), Positives = 115/227 (50%)
Query: 31 INQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGST 89
+ Q PT L +A AV ++ RK S VL GL SGKT+LF +L G
Sbjct: 738 LQQRDPTLLSVAVAVLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ- 796
Query: 90 HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVVD 148
++ T TS+ + + + + +G + L+D+PGH LR + LD F A +VFVVD
Sbjct: 797 YRDTQTSI--TDSSAIYKVNNNRGN--SLTLIDLPGHESLRLQFLDRFKSSARAVVFVVD 852
Query: 149 ALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208
+ F +E+LY +L +S +K L+ CNK D A + + I++Q+EKE++ L
Sbjct: 853 SATFQREVKDVAEFLYQVLIDSMALKNTPAFLVACNKQDIAMAKSAKLIQQQLEKELNTL 912
Query: 209 RASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG 252
R +RSA ++ T LG G+ F FSQ KV E S G
Sbjct: 913 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGG 959
|
|
| UNIPROTKB|F1MLG1 LOC100138613 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 76/227 (33%), Positives = 114/227 (50%)
Query: 31 INQIPPTQLYIACAVXXXXXXXXXXXQV-FRRKKSTTIVLAGLSGSGKTVLFYQLRDGST 89
+ Q PT L + A+ + RR ++L GL SGKT+LF +L G
Sbjct: 30 LQQRDPTLLSVVVALLAVLLTLVFWKFIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTG-L 88
Query: 90 HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVVD 148
++ T TS+ + + +++ +G + L+D+PGH LR + L+ F A IVFVVD
Sbjct: 89 YRDTQTSITDSSAAYKVNNN--RGT--NLTLIDLPGHESLRLQFLERFKASARAIVFVVD 144
Query: 149 ALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208
+ F +E+LY +L +S +K LI CNK D A + + I++Q+EKEI+ L
Sbjct: 145 SAAFQREVKDVAEFLYQVLLDSIGLKNTPSFLIACNKQDITMAKSAKLIQQQLEKEINTL 204
Query: 209 RASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG 252
R +RSA ++ T LG G+ F FSQ KV E S G
Sbjct: 205 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGG 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P36057 | SRPB_YEAST | No assigned EC number | 0.3012 | 0.8127 | 0.8893 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 267 | |||
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 4e-69 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 8e-39 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 7e-14 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 5e-13 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-12 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 1e-10 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 2e-10 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 5e-09 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 3e-07 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 5e-07 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 6e-06 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 9e-06 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 2e-05 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 3e-05 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 4e-05 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 5e-05 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 6e-05 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 8e-05 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 9e-05 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 1e-04 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 1e-04 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 3e-04 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 3e-04 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 4e-04 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 0.001 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 0.001 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 0.002 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 0.003 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 4e-69
Identities = 86/205 (41%), Positives = 114/205 (55%), Gaps = 12/205 (5%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG 125
T++L G S SGKT LF +L G TVTS+EPN +F +S K K + LVDVPG
Sbjct: 2 TVLLLGPSDSGKTALFTKLTTGKVRS-TVTSIEPNVASFYSNS----SKGKKLTLVDVPG 56
Query: 126 HSRLRPKLDEFLPQAA-GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
H +LR KL E+L + IVFVVD+ F N +E+LYDILT+ +K KIP+LI CN
Sbjct: 57 HEKLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACN 116
Query: 185 KTDKVTAHTKEFIRKQMEKEIDKLRASRSA----VSEADVTNDFTLGIPGQAFSFSQCHN 240
K D TA + I++ +EKEI+ LR SRS + D + D G+ F F Q
Sbjct: 117 KQDLFTAKPAKKIKELLEKEINTLRESRSKSLESLDGDDGSKDTLGDKGGKDFEFDQLEG 176
Query: 241 KVSVAE--ASGLTGEISQVEQFIRE 263
+V E G I +E++I E
Sbjct: 177 EVDFVEGSVKKSKGGIDDIEEWIDE 201
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 8e-39
Identities = 70/187 (37%), Positives = 99/187 (52%), Gaps = 12/187 (6%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
+++AGL SGKT LF L G+ + TVTS EP+ KG L+
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGTVKK-TVTSQEPS---AAYKYMLHKGFSFT--LI 54
Query: 122 DVPGHSRLRPKLDE---FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 178
D PGH +LR KL E GIVFVVD+ F + +E+LY+IL+ + ++K I
Sbjct: 55 DFPGHVKLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGID 114
Query: 179 VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS-AVSEADVTND--FTLGIPGQAFSF 235
+LI CNK + TA + I++ +EKEI+ +R RS A+S D ++D LG G+ F F
Sbjct: 115 ILIACNKQESFTARPPKKIKQALEKEINTIRERRSKALSGLDGSDDLSAVLGKKGKDFKF 174
Query: 236 SQCHNKV 242
Q V
Sbjct: 175 DQLEGNV 181
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-14
Identities = 41/158 (25%), Positives = 59/158 (37%), Gaps = 29/158 (18%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRD--------------GSTHQGTVTSMEPNEDTFVLH 107
T IV+ G G+GKT L D G + T +M+
Sbjct: 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG------- 60
Query: 108 SESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDIL 167
S VHL PG R + + A G + +VD+ P A E + D L
Sbjct: 61 SIELDEDTG-VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR--PITFHA-EEIIDFL 116
Query: 168 TNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205
T + IPV++ NK D A E IR+ ++ E+
Sbjct: 117 T----SRNPIPVVVAINKQDLFDALPPEKIREALKLEL 150
|
Length = 187 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 5e-13
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK IV GL +GKT L + L+D Q V ++ P + + G +K
Sbjct: 17 KKEAKIVFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSEELTI------GNVK-FTTF 68
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVL 180
D+ GH + R ++ P+ GIVF+VDA + P S E L +L + + P+L
Sbjct: 69 DLGGHEQARRVWKDYFPEVDGIVFLVDAAD--PERFQESKEELDSLLNDEELANV--PIL 124
Query: 181 ICCNKTDKVTAHTKEFIRKQM 201
I NK DK A ++E +R+ +
Sbjct: 125 ILGNKIDKPGAVSEEELREAL 145
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-12
Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 13/142 (9%)
Query: 68 VLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH- 126
V+ G G GK+ L L G G V+ + ++ + + LVD PG
Sbjct: 1 VVVGRGGVGKSSLLNALLGG--EVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLD 58
Query: 127 ----SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182
L A I+ VVD+ SE +L + K+ IP+++
Sbjct: 59 EFGGLGREELARLLLRGADLILLVVDS------TDRESEEDAKLLILRRLRKEGIPIILV 112
Query: 183 CNKTDKVTAHTKEFIRKQMEKE 204
NK D + E + + E
Sbjct: 113 GNKIDLLEEREVEELLRLEELA 134
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-10
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL G+GKT + Y+L+ G V + P T + E+ + K + DV G
Sbjct: 2 ILMLGLDGAGKTTILYKLK-----LGEVVTTIP---TIGFNVETVEYKNVKFTVWDVGGQ 53
Query: 127 SRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
++RP + G++FVVD+ E + A L+ +L + K P+LI N
Sbjct: 54 DKIRPLWKHYYENTDGLIFVVDSSDRERI---EEAKNELHKLLNEEEL--KGAPLLILAN 108
Query: 185 KTDKVTAHTKEFIRKQME 202
K D A T+ + + +
Sbjct: 109 KQDLPGALTESELIELLG 126
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 19/155 (12%)
Query: 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSE 109
L +L ++F K I++ GL +GKT + Y+L+ G T T+
Sbjct: 2 LSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTI------------GFN 49
Query: 110 STKGKIKPV--HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDIL 167
K V + DV G LRP + P ++FVVD+ + A E L+ +L
Sbjct: 50 VETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRD-RIEEAKEELHALL 108
Query: 168 TNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
+ P+LI NK D A ++ IR+ +
Sbjct: 109 NEEEL--ADAPLLILANKQDLPGAMSEAEIRELLG 141
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-09
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 14/142 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRD-----GSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
IV+ G GK+ L +L GT +V GK +L+
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKISITEYKPGT-------TRNYVTTVIEEDGKTYKFNLL 56
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D G + + V D + + + E + + + +P+++
Sbjct: 57 DTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIH--HAESGVPIIL 114
Query: 182 CCNKTDKVTAHTKEFIRKQMEK 203
NK D A K + K
Sbjct: 115 VGNKIDLRDAKLKTHVAFLFAK 136
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-07
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 7/146 (4%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
IV+ G G GKT L +L +G ++ + + K++ L D G
Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQ---LWDTAGQ 64
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
R E+ A GI+ V D + +E + L + +P+L+ NK
Sbjct: 65 EEYRSLRPEYYRGANGILIVYD-STLRESSDELTEEWLEEL--RELAPDDVPILLVGNKI 121
Query: 187 DKVTAH-TKEFIRKQMEKEIDKLRAS 211
D + E I Q+ +E+ L +
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLA 147
|
Length = 219 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-07
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I L GL SGKT L + G + T+ ++ N + TKG + + + D+ G
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFN------MRKVTKGNVT-IKVWDLGGQ 54
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
R R + + IV+VVDA + A L+D+L ++ + IP+L+ NK
Sbjct: 55 PRFRSMWERYCRGVNAIVYVVDAADRE-KLEVAKNELHDLLEKPSL--EGIPLLVLGNKN 111
Query: 187 DKVTAHTKEFIRKQM 201
D A + + + +QM
Sbjct: 112 DLPGALSVDELIEQM 126
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-06
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
++L GL +GK+ L Y+L+ T+ ++ N + L + + + DV G
Sbjct: 2 VLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQLEKHLS------LTVWDVGGQ 54
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
++R +L G+V+VVD+ + + E L IL N + K +PV++ NK
Sbjct: 55 EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKE-LKHILKNEHI--KGVPVVLLANKQ 111
Query: 187 DKVTAHTKEFIRKQMEKEIDKLRASR 212
D A T E I ++ ++ K + R
Sbjct: 112 DLPGALTAEEITRRF--KLKKYCSDR 135
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 9e-06
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
K I+ GL +GKT L + L++ + HQ T P + E G IK
Sbjct: 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPT---QHPTSE------ELAIGNIK-FT 64
Query: 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ GIV++VDA + + E D L + + +P
Sbjct: 65 TFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRE--LDALLSDEEL-ATVPF 121
Query: 180 LICCNKTDKVTAHTKEFIR 198
LI NK D A +++ +R
Sbjct: 122 LILGNKIDAPYAASEDELR 140
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 42/166 (25%)
Query: 55 LLQVFRRKKSTT-----IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE 109
LL + R+ K ++ I+L GL +GKT + QL +ED + H
Sbjct: 1 LLSILRKLKPSSRQEVRILLLGLDNAGKTTILKQL--------------ASED--ISHIT 44
Query: 110 STKG-KIKPV-------HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA-----LEFLPNC 156
T+G IK V ++ D+ G ++RP + +++V+D+ E
Sbjct: 45 PTQGFNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFE----- 99
Query: 157 SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
A + L ++L +PVL+ NK D +TA E + + +
Sbjct: 100 -EAGQELVELLEE--EKLAGVPVLVFANKQDLLTAAPAEEVAEALN 142
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-05
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+V+ G GSGK+ L QL G +E DT + + G +++ D G
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEF---PPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGR 58
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS-EYLYDI---LTNSTVVKKKIPVLIC 182
L+ + F+ A I+ V D S + + L N + KIPV++
Sbjct: 59 EELKFEHIIFMKWADAILLVYD------LTDRESLNEVSRLIAWLPNLRKLGGKIPVILV 112
Query: 183 CNKT 186
NK
Sbjct: 113 GNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-05
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPV--HLVDVP 124
IV+ GL +GKT + Y+L+ + TV + N + + + G K V H DV
Sbjct: 6 IVMLGLDSAGKTTVLYRLK-FNEFVNTVPTKGFNTEKIKV----SLGNAKGVTFHFWDVG 60
Query: 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
G +LRP + GIVFVVD+++ A +E L+ I S + +PVL+ N
Sbjct: 61 GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTE-LHKITKFSE--NQGVPVLVLAN 117
Query: 185 KTD 187
K D
Sbjct: 118 KQD 120
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL G+GKT L + L + + V T +S + + + L+++ G
Sbjct: 2 ILVLGLDGAGKTSLLHSLSSERSLESVVP-------TTGFNSVAIPTQDAIMELLEIGGS 54
Query: 127 SRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
LR +L + G++FVVD+ E LP A + L+ +L + +P+++ N
Sbjct: 55 QNLRKYWKRYLSGSQGLIFVVDSADSERLP---LARQELHQLLQHPPD----LPLVVLAN 107
Query: 185 KTDKVTAHTKEFIRKQMEKE 204
K D A + + I K++E E
Sbjct: 108 KQDLPAARSVQEIHKELELE 127
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-05
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVP 124
I++ GL SGKT + QL+ + Q V ++ N ++F + S D+
Sbjct: 1 NILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLS-------FTAFDMS 53
Query: 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
G + R + + GI+FV+D+ + L A E L +L + + ++IP+L N
Sbjct: 54 GQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDE-LELLLNHPDIKHRRIPILFYAN 112
Query: 185 KTDKVTAHTKEFI 197
K D A T I
Sbjct: 113 KMDLPDALTAVKI 125
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-05
Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 21/158 (13%)
Query: 67 IVLAGLSGSGKTVLFYQLR-------DGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
+++ GL +GKT Q + G ++ N T + GK + +
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEV------GKAR-LM 54
Query: 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKI 177
D+ G LR D++ ++ G+++V+D+ E +A ++ + N+ + + +
Sbjct: 55 FWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSA----FEKVINNEAL-EGV 109
Query: 178 PVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215
P+L+ NK D A + I++ + I + V
Sbjct: 110 PLLVLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLV 147
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 9e-05
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGK 114
L KK I++ GL +GKT + Y+L+ G VT++ T + E+ + K
Sbjct: 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIP----TIGFNVETVEYK 59
Query: 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA 149
+ DV G ++RP + G++FVVD+
Sbjct: 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94
|
Length = 181 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 27/141 (19%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG- 113
L +F +K +++ GL +GKT + YQ G V+H+ T G
Sbjct: 6 LWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGE----------------VVHTSPTIGS 49
Query: 114 -----KIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDI 166
K + + D+ G LR + + ++ V+D+ + E LY +
Sbjct: 50 NVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD-RERLPLTKEELYKM 108
Query: 167 LTNSTVVKKKIPVLICCNKTD 187
L + + +K +L+ NK D
Sbjct: 109 LAHEDL--RKAVLLVLANKQD 127
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K I++ GL +GKT + Y+L+ G +VT++ T + E+ K +
Sbjct: 11 NKEMRILMVGLDAAGKTTILYKLKLGE----SVTTIP----TIGFNVETVTYKNISFTVW 62
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA 149
DV G ++RP + G++FVVD+
Sbjct: 63 DVGGQDKIRPLWRHYYTNTQGLIFVVDS 90
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 53 LLLLQVFRR---KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE 109
L L F+ KK I++ GL +GKT + Y+L+ G VT++ T + E
Sbjct: 3 LWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGE----VVTTIP----TIGFNVE 54
Query: 110 STKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA 149
+ + K + DV G +LRP + G++FVVD+
Sbjct: 55 TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDS 94
|
Length = 182 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL G+GKT + Y+L G V + P T + E+ K + D+ G
Sbjct: 2 ILILGLDGAGKTTILYRL-----QVGEVVTTIP---TIGFNVETVTYKNLKFQVWDLGGQ 53
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
+ +RP + I++VVD+ + + L+ +L + K +L+ NK
Sbjct: 54 TSIRPYWRCYYSNTDAIIYVVDSTD-RDRLGISKSELHAMLEEEEL--KDAVLLVFANKQ 110
Query: 187 D 187
D
Sbjct: 111 D 111
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 31/141 (21%)
Query: 66 TIVLAGLSGSGKTVLFYQL--------RDGSTHQGTVTSMEPNEDTFVLHSEST------ 111
I L G SGSGKT L L R G G S E+ S T
Sbjct: 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGRVEDGNTVSDYDPEEKKRKMSIETSVAPLE 60
Query: 112 -KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNS 170
G ++L+D PG +F+ + + VDA + A S ++ T
Sbjct: 61 WNG--HKINLIDTPG-------YADFVGETLSALRAVDAALIV--VEAQSG--VEVGTEK 107
Query: 171 T---VVKKKIPVLICCNKTDK 188
+ K+P +I NK D+
Sbjct: 108 VWEFLDDAKLPRIIFINKMDR 128
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 22/100 (22%)
Query: 120 LVDVPGHSRLRPKLDEFLPQAAG--------IVFVVDALEFLPNCSAASEYLYDILTNST 171
VD PG + + L E + +AA I+FVVDA E E++ + L
Sbjct: 58 FVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADE---GWGPGDEFILEQLK--- 111
Query: 172 VVKKKIPVLICCNKTDKVTAHTK-----EFIRKQME-KEI 205
K K PV++ NK DKV T F++K + KEI
Sbjct: 112 --KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEI 149
|
Length = 298 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K I++ GL +GKT + Y+L+ G + VT++ T + E+ K ++
Sbjct: 7 NKEMRILMLGLDAAGKTTILYKLKLGQS----VTTIP----TVGFNVETVTYKNVKFNVW 58
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA 149
DV G ++RP + G++FVVD+
Sbjct: 59 DVGGQDKIRPLWRHYYTGTQGLIFVVDS 86
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.002
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 27/134 (20%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS-MEPNEDTFVLHSESTKGKIKPVHLVDVP 124
T++ GL +GKT L L V + L K + V + D+
Sbjct: 1 TLLTVGLDNAGKTTLVSAL--QGEIPKKVAPTVGFTPTKLRL------DKYE-VCIFDLG 51
Query: 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS-------EYLYDILTNSTVVKKKI 177
G + R + +A G+VFVVD S+ E L ++L + V K
Sbjct: 52 GGANFRGIWVNYYAEAHGLVFVVD--------SSDDDRVQEVKEILRELLQHPRVSGK-- 101
Query: 178 PVLICCNKTDKVTA 191
P+L+ NK DK A
Sbjct: 102 PILVLANKQDKKNA 115
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 96 SMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEF---LPQAAGIVFVVDALEF 152
S++ N + VL E +KGK ++++D PGH +DE L G+V VVD +E
Sbjct: 53 SIKSNPISLVL--EDSKGKSYLINIIDTPGHVNF---MDEVAAALRLCDGVVLVVDVVE- 106
Query: 153 LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188
++ +E L +++ +P+++ NK D+
Sbjct: 107 --GLTSVTERLIR-----HAIQEGLPMVLVINKIDR 135
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 267 | |||
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.97 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.97 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.97 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.97 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.96 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.96 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.96 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.96 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.95 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.95 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.95 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.95 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.95 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.95 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.95 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.95 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.95 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.95 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.95 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.95 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.95 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.95 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.95 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.95 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.95 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.95 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.95 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.95 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.95 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.95 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.95 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.95 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.95 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.95 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.95 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.95 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.95 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.95 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.95 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.95 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.95 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.95 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.94 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.94 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.94 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.94 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.94 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.94 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.94 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.94 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.94 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.94 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.94 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.94 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.94 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.94 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.94 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.94 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.94 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.94 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.94 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.94 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.94 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.94 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.94 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.94 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.94 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.94 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.94 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.94 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.94 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.94 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.94 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.94 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.94 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.94 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.94 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.94 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.94 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.94 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.94 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.93 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.93 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.93 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.93 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.93 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.93 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.93 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.93 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.93 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.93 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.93 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.93 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.93 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.93 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.93 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.93 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.93 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.93 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.93 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.93 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.93 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.93 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.92 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.92 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.92 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.92 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.92 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.92 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.92 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.92 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.92 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.92 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.92 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.92 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.92 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.92 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.92 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.91 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.91 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.91 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.91 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.91 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.91 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.91 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.9 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.9 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.9 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.9 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.9 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.9 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.9 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.89 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.89 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.89 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.89 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.89 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.89 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.89 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.89 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.89 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.88 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.88 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.88 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.87 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.87 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.87 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.87 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.87 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.87 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.86 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.86 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.86 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.86 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.86 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.86 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.86 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.85 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.85 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.85 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.85 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.85 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.85 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.85 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.85 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.85 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.85 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.85 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.84 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.84 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.84 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.84 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.84 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.84 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.84 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.84 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.84 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.84 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.83 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.83 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.83 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.83 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.82 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.82 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.82 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.82 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.82 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.82 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.82 | |
| PTZ00099 | 176 | rab6; Provisional | 99.81 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.81 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.81 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.81 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.81 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.81 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.81 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.8 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.8 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.8 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.8 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.8 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.8 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.8 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.8 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.8 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.79 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.79 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.79 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.79 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.79 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.78 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.78 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.78 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.78 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.77 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.77 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.77 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.77 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.75 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.75 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.75 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.74 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.74 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.74 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.74 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.74 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.73 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.73 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.73 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.73 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.73 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.72 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.72 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.72 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.71 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.71 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.71 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.71 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.71 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.71 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.7 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.7 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.7 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.7 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.69 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.69 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.68 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.68 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.68 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.68 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.67 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.67 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.66 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.65 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.65 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.64 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.64 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.64 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.64 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.63 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.63 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.63 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.61 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.61 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.59 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.59 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.58 | |
| PRK13768 | 253 | GTPase; Provisional | 99.57 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.57 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.56 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.55 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.54 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.54 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.53 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.53 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.52 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.52 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.52 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.51 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.51 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.51 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.51 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.49 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.49 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.48 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.47 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.46 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.42 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.38 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.38 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.37 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.35 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.35 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.33 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.32 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.32 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.3 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.29 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.27 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.26 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.25 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.23 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.22 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.22 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.22 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.21 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.17 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.16 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.16 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.13 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.1 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.09 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.09 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 99.08 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.06 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.03 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.03 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.0 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.0 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.99 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.98 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.94 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.91 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 98.9 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 98.88 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.86 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 98.86 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.83 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.83 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.83 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 98.78 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.78 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.77 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 98.76 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.76 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.75 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.75 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.74 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.7 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.7 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.7 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.7 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.68 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.67 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.63 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.61 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.6 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.58 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.57 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.56 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.55 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.55 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.53 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.5 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.5 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.5 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.49 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.48 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.47 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.47 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.46 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.46 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.45 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.44 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.41 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.41 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.4 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.38 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.34 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.29 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.28 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.27 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.24 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.23 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.23 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.21 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.2 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.18 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.17 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.17 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.16 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.16 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.16 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.15 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.14 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.13 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.13 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.11 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.1 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.09 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.08 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 98.07 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 98.07 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.04 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.04 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.03 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.02 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.0 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.99 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.95 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.93 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.93 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.91 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.88 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.87 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 97.86 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.86 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 97.84 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.83 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.83 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 97.82 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.77 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.71 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.7 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.69 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.69 | |
| KOG4273 | 418 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.67 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.65 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.64 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 97.64 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.64 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.64 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.62 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.55 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.51 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.5 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.5 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.47 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.45 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.45 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.44 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.44 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.43 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.37 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.36 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.36 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.27 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.26 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.21 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.2 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.16 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.15 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.03 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.01 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.0 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 96.99 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.93 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 96.92 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.92 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 96.91 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 96.91 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 96.85 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 96.84 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.83 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 96.83 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 96.82 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 96.8 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 96.8 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 96.78 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 96.76 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.75 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 96.73 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 96.73 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 96.73 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 96.72 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 96.68 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.67 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.67 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.66 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 96.65 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 96.63 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 96.63 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.63 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.62 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 96.62 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 96.61 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 96.6 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 96.59 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 96.58 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 96.58 | |
| PRK06217 | 183 | hypothetical protein; Validated | 96.57 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 96.56 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 96.56 | |
| PRK03839 | 180 | putative kinase; Provisional | 96.55 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 96.55 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 96.54 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 96.54 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 96.53 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 96.53 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 96.53 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 96.52 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 96.51 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 96.51 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 96.51 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 96.5 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 96.49 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 96.49 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 96.48 |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=205.99 Aligned_cols=206 Identities=59% Similarity=0.852 Sum_probs=181.6
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh
Q 024474 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 52 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
.....+.+++.....|+++|+.+||||+|+-+|..+. .+++++++.|+..++..... .++++|.||+.+.+.
T Consensus 26 ~~~~~~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs-~~~TvtSiepn~a~~r~gs~-------~~~LVD~PGH~rlR~ 97 (238)
T KOG0090|consen 26 LFLKLKLFRRSKQNAVLLVGLSDSGKTSLFTQLITGS-HRGTVTSIEPNEATYRLGSE-------NVTLVDLPGHSRLRR 97 (238)
T ss_pred HHHHHHHHhhccCCcEEEEecCCCCceeeeeehhcCC-ccCeeeeeccceeeEeecCc-------ceEEEeCCCcHHHHH
Confidence 3344556667777899999999999999999999886 46678889888877765432 489999999999999
Q ss_pred hHHhhhc---cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
....++. .+.+++||+|+...........+++++++..+......+|+++++||.|+..+.+.+.+++.++++++.+
T Consensus 98 kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~l 177 (238)
T KOG0090|consen 98 KLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKL 177 (238)
T ss_pred HHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHH
Confidence 8888887 7899999999987667899999999999988765568899999999999999999999999999999999
Q ss_pred Hhhhh---ccccccccccccCCCCCCCccccccc-ceeEEEEeeeccCcchhHHHHHHhhc
Q 024474 209 RASRS---AVSEADVTNDFTLGIPGQAFSFSQCH-NKVSVAEASGLTGEISQVEQFIREQV 265 (267)
Q Consensus 209 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~i~~l~~~l~~~~ 265 (267)
+..++ +++.++..+.+.++.++.+|.|+++. .++.|.++|+++|++++|.+||++++
T Consensus 178 r~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 178 RESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTGEIDQWESWIREAL 238 (238)
T ss_pred HHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcCChHHHHHHHHHhC
Confidence 99999 56778888889999999999999998 99999999999999999999999864
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=197.73 Aligned_cols=161 Identities=19% Similarity=0.326 Sum_probs=135.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|+.|+|||+|+.|+.++.|.+.+.+|+ +.++......++++.+++++|||+|+++|+....+||++|++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTI---GVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTI---GVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhccee---eeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 45799999999999999999999999988888887 677888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH-HHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
||+|||+++. .+|..+..|+.++-+... .+.|.++|+||+|+........ ..+.+.
T Consensus 85 ii~vyDiT~~-~SF~~v~~Wi~Ei~~~~~---~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa------------------- 141 (205)
T KOG0084|consen 85 IIFVYDITKQ-ESFNNVKRWIQEIDRYAS---ENVPKLLVGNKCDLTEKRVVSTEEAQEFA------------------- 141 (205)
T ss_pred EEEEEEcccH-HHhhhHHHHHHHhhhhcc---CCCCeEEEeeccccHhheecCHHHHHHHH-------------------
Confidence 9999999997 899999999999988753 6789999999999987654321 111111
Q ss_pred ccccCCCCCCCcccccccceeE-EEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVS-VAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+ ..+.+ |+|+|||++. +++.+..|...+
T Consensus 142 ---------------~-~~~~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 142 ---------------D-ELGIPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ---------------H-hcCCcceeecccCCccCHHHHHHHHHHHH
Confidence 1 22334 9999999999 998887776543
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=195.08 Aligned_cols=163 Identities=19% Similarity=0.271 Sum_probs=136.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+|++++|..++|||||+-|+..+.|++...+++ +..|......+++..+++.||||+|+++|.++.+.||++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TI---GaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~ 79 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTI---GAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGAN 79 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccccccccc---ccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCc
Confidence 356799999999999999999999999987656665 56677777777777889999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|||+++. +++..++.|+.++.++. .+++-+.+||||+||...+.+ ++.....+
T Consensus 80 AAivvYDit~~-~SF~~aK~WvkeL~~~~---~~~~vialvGNK~DL~~~R~V~~~ea~~yAe----------------- 138 (200)
T KOG0092|consen 80 AAIVVYDITDE-ESFEKAKNWVKELQRQA---SPNIVIALVGNKADLLERREVEFEEAQAYAE----------------- 138 (200)
T ss_pred EEEEEEecccH-HHHHHHHHHHHHHHhhC---CCCeEEEEecchhhhhhcccccHHHHHHHHH-----------------
Confidence 99999999997 89999999999998875 367778889999999874432 22221111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
..+..|+|+|||||. +++++..|.+.+++
T Consensus 139 -------------------~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 139 -------------------SQGLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred -------------------hcCCEEEEEecccccCHHHHHHHHHHhccC
Confidence 245689999999999 99999999998874
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=200.39 Aligned_cols=196 Identities=45% Similarity=0.637 Sum_probs=152.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC-CEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA-AGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-d~i 143 (267)
++|+++|++|||||||+++|..+.+... .+++.++...+... ..+....+.+|||||+.+++..+..+++.+ +++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t-~~s~~~~~~~~~~~---~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~v 76 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-VTSIEPNVATFILN---SEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGI 76 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc-cCcEeecceEEEee---cCCCCceEEEEECCCCHHHHHHHHHHHhccCCEE
Confidence 3799999999999999999999876443 23333332222221 113346799999999999999999999998 999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc-c---cc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS-E---AD 219 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~---~~ 219 (267)
|||+|+++..+++.....++..++........++|+++|+||+|+..+.+.+.+++.++++++.++..+++.- . .+
T Consensus 77 V~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~ 156 (203)
T cd04105 77 VFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDE 156 (203)
T ss_pred EEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999864567778888888766433223689999999999999999999999999999999999887632 1 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc--chhHHHHHHhh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQ 264 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~ 264 (267)
.......+..+..|.|+++..++.|+++|++.++ ++.|.+||.++
T Consensus 157 ~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~~ 203 (203)
T cd04105 157 GSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDEL 203 (203)
T ss_pred ccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhhC
Confidence 1222223456778999999999999999999988 99999999874
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=190.67 Aligned_cols=164 Identities=17% Similarity=0.240 Sum_probs=135.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+|++++|..++|||||+++++.+.|...+..++ +.++......+.+..+++++|||+||++|+.+.+.|+++++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI---GiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI---GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccccccee---eeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 345899999999999999999999999887777666 66777777777888899999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|||.++. +++++..+|+.+++..... .+.-+++|+||.||.+.+....-... +...
T Consensus 97 vaviVyDit~~-~Sfe~t~kWi~dv~~e~gs--~~viI~LVGnKtDL~dkrqvs~eEg~--~kAk--------------- 156 (221)
T KOG0094|consen 97 VAVIVYDITDR-NSFENTSKWIEDVRRERGS--DDVIIFLVGNKTDLSDKRQVSIEEGE--RKAK--------------- 156 (221)
T ss_pred EEEEEEecccc-chHHHHHHHHHHHHhccCC--CceEEEEEcccccccchhhhhHHHHH--HHHH---------------
Confidence 99999999998 8999999999999986531 34778999999999877544221111 1111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|. |.+|+.-|...+
T Consensus 157 -----------------el~a~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 157 -----------------ELNAEFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred -----------------HhCcEEEEecccCCCCHHHHHHHHHHhc
Confidence 345689999999999 999988776654
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=193.22 Aligned_cols=160 Identities=19% Similarity=0.264 Sum_probs=121.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
.|+++|..|||||||++++..+.|...+.+++ +..+......+++..+.+++|||+|+++|+.++..|++++|++|+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti---~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIl 78 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGV---GVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 78 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcc---eeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEE
Confidence 58999999999999999999988755443333 223444444556777899999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+...+.... +..++..+.
T Consensus 79 VfDvtd~-~Sf~~l~~w~~~i~~~~---~~~~piilVgNK~DL~~~~~v~~--~~~~~~a~~------------------ 134 (202)
T cd04120 79 VYDITKK-ETFDDLPKWMKMIDKYA---SEDAELLLVGNKLDCETDREISR--QQGEKFAQQ------------------ 134 (202)
T ss_pred EEECcCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCH--HHHHHHHHh------------------
Confidence 9999997 78999998887665432 26799999999999964332210 001110000
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ |+++++||.+.+
T Consensus 135 -------------~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 135 -------------ITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred -------------cCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998754
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=191.93 Aligned_cols=158 Identities=19% Similarity=0.218 Sum_probs=123.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
...||+++|..|+|||||++++..+.+.....++. +.++......+++..+.+++|||+|+++++.++..+++++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~---~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNM---GIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---eeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 45799999999999999999999887654333222 223333344456777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|||+++. .+++.+..|+.++.... .+.|+++|+||+|+..... .++..+.. +
T Consensus 82 illVfD~t~~-~Sf~~~~~w~~~i~~~~----~~~piilVGNK~DL~~~~~v~~~~~~~~a----~-------------- 138 (189)
T cd04121 82 IILVYDITNR-WSFDGIDRWIKEIDEHA----PGVPKILVGNRLHLAFKRQVATEQAQAYA----E-------------- 138 (189)
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECccchhccCCCHHHHHHHH----H--------------
Confidence 9999999997 78999999999987642 5799999999999965432 22211111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..++.|++|||++|. ++++++||.+.
T Consensus 139 ------------------~~~~~~~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 139 ------------------RNGMTFFEVSPLCNFNITESFTELARI 165 (189)
T ss_pred ------------------HcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 224579999999999 99999999864
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=187.98 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=135.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|.+|||||+++.++..+.|.....+++ +.++.......++..+.+++|||+|+++|+.+...|+++|+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi---GIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI---GIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE---EEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 456799999999999999999999999877777776 67788888888899999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++++|||+++. .+++.+..|+..+-++.. .+.|+++||||+|+...+.+ .+.-+.+..
T Consensus 87 gi~LvyDitne-~Sfeni~~W~~~I~e~a~---~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~----------------- 145 (207)
T KOG0078|consen 87 GILLVYDITNE-KSFENIRNWIKNIDEHAS---DDVVKILVGNKCDLEEKRQVSKERGEALAR----------------- 145 (207)
T ss_pred eeEEEEEccch-HHHHHHHHHHHHHHhhCC---CCCcEEEeeccccccccccccHHHHHHHHH-----------------
Confidence 99999999997 789999999999988753 68999999999999875433 222222221
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+|+||++|. |++.+-.|...+
T Consensus 146 ------------------e~G~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 146 ------------------EYGIKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred ------------------HhCCeEEEccccCCCCHHHHHHHHHHHH
Confidence 346789999999999 888876665543
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=191.02 Aligned_cols=162 Identities=20% Similarity=0.267 Sum_probs=120.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC-CccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+||+++|++|||||||+++|.++.+.....++. +.++......++ +..+.+.+|||||++.++.++..+++++|++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~---~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ 77 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI---GVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGA 77 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce---eEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEE
Confidence 489999999999999999999987654433333 223333333344 5668899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTA--HTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~pvivv~nK~Dl~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|+|||+++. .+++.+..|+..+...... ...++|+++|+||+|+... ...++..+..+ .
T Consensus 78 ilv~D~t~~-~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~----~------------- 139 (201)
T cd04107 78 IIVFDVTRP-STFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCK----E------------- 139 (201)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHH----H-------------
Confidence 999999987 7899988888776542111 1367899999999999732 22222222111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...++++||++|+ ++++++||.+++
T Consensus 140 ------------------~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 140 ------------------NGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred ------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=185.03 Aligned_cols=159 Identities=21% Similarity=0.369 Sum_probs=117.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|..+.+.. ..++.. .++ .. +....+.+++|||||+++++..+..+++++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g---~~~--~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~ 78 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG---FNV--ET--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 78 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcc---cce--EE--EEECCEEEEEEECCCCHHHHHHHHHHhccCC
Confidence 456899999999999999999998766532 222221 111 11 1223478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|||+++. .++.....++.+++.... ..++|+++|+||+|+......+++.+.+.
T Consensus 79 ~ii~v~D~t~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~------------------- 136 (168)
T cd04149 79 GLIFVVDSADR-DRIDEARQELHRIINDRE--MRDALLLVFANKQDLPDAMKPHEIQEKLG------------------- 136 (168)
T ss_pred EEEEEEeCCch-hhHHHHHHHHHHHhcCHh--hcCCcEEEEEECcCCccCCCHHHHHHHcC-------------------
Confidence 99999999986 678888888888876432 15689999999999975444433332221
Q ss_pred ccccCCCCCCCcccccc-cceeEEEEeeeccCc-chhHHHHHHh
Q 024474 222 NDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
+... ...+.++++||++|+ ++++++||.+
T Consensus 137 -------------~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 137 -------------LTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred -------------CCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 0000 234578999999999 9999999976
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=181.75 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=118.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.++.+.....++ ..........+++..+.+++|||||+++++.++..+++.+|+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i 77 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT----IEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 77 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCc----chheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE
Confidence 58999999999999999999988764433332 22222223334555677899999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .+++....|+..+.+... ..+.|+++|+||+|+........ ...+...
T Consensus 78 ~v~~~~~~-~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~------------------ 133 (162)
T cd04138 78 CVFAINSR-KSFEDIHTYREQIKRVKD--SDDVPMVLVGNKCDLAARTVSSR---QGQDLAK------------------ 133 (162)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccceecHH---HHHHHHH------------------
Confidence 99999986 678888888888776432 25789999999999975321111 1111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 134 --------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 134 --------------SYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred --------------HhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 123468999999999 999999998765
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=182.80 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=119.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++..+.+..... ++..........+++..+.+++|||||++++...+..+++++|+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYD----PTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV 77 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccC----CchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence 599999999999999999999887644332 3222232333344666678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++....|+..+..... ..+.|+++|+||+|+........ +.......
T Consensus 78 lv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~------------------ 134 (163)
T cd04136 78 LVYSITSQ-SSFNDLQDLREQILRVKD--TENVPMVLVGNKCDLEDERVVSR--EEGQALAR------------------ 134 (163)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceecH--HHHHHHHH------------------
Confidence 99999986 678888888888776432 25789999999999965332111 11111000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ ++++++||.+.+
T Consensus 135 --------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 135 --------------QWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred --------------HcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 112579999999999 999999998764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=183.65 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=120.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.....++. +.++......+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI---GVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCccc---ceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 589999999999999999999887644333222 22233333344666688999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+....... .+...+...
T Consensus 80 lv~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iiiv~nK~Dl~~~~~~~--~~~~~~~~~------------------ 135 (166)
T cd04122 80 MVYDITRR-STYNHLSSWLTDARNLT---NPNTVIFLIGNKADLEAQRDVT--YEEAKQFAD------------------ 135 (166)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCcC--HHHHHHHHH------------------
Confidence 99999997 78899999988776542 2578999999999997543221 111111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 136 --------------~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 136 --------------ENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred --------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999998887654
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=182.30 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=135.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
++...||+++|++|+|||||+|++...+|...+-.++ +.++......+++..+.+++|||+|+++|.++.-.+++++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTI---gadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRga 82 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATI---GADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGA 82 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhcccc---chhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCC
Confidence 4556799999999999999999999999877666666 5567667777788889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCC-CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVV-KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|||..+. .+++.+..|-.+++.++... +...|+||+|||+|+....+...-.+..+.
T Consensus 83 DcCvlvydv~~~-~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~---------------- 145 (210)
T KOG0394|consen 83 DCCVLVYDVNNP-KSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQT---------------- 145 (210)
T ss_pred ceEEEEeecCCh-hhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHH----------------
Confidence 999999999997 88999999999999876633 367899999999999764322111111111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
|....++++|||+|||.+- +++.++.+..
T Consensus 146 ---------------WC~s~gnipyfEtSAK~~~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 146 ---------------WCKSKGNIPYFETSAKEATNVDEAFEEIAR 175 (210)
T ss_pred ---------------HHHhcCCceeEEecccccccHHHHHHHHHH
Confidence 2222678899999999998 8777766554
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=183.21 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=119.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|||||||++++..+.+..... ++...........++..+.+++|||||++.+..++..+++++|+++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYD----PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFV 77 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccC----CcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEE
Confidence 589999999999999999999876544332 2222222223334566678899999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+..+..... ..+.|+++|+||+|+........ +......+
T Consensus 78 lv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~------------------ 134 (164)
T cd04175 78 LVYSITAQ-STFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGK--EQGQNLAR------------------ 134 (164)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCcchhccEEcH--HHHHHHHH------------------
Confidence 99999886 678888888888876432 26789999999999975432211 01111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|+++||++|. ++++++||.+.+
T Consensus 135 --------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 135 --------------QWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred --------------HhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 123479999999999 999999998865
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=184.31 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=119.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+|++++|.+|+|||||+.++..+.|...+.+++.. .+ .....+++..+.+++|||+|+++++.+...+++++|++|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~---~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~i 77 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD---NF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 77 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCccee---ee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEE
Confidence 48999999999999999999999886655555422 22 222344677789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH--------HHHHHHHHHHHHHHhhhhcc
Q 024474 145 FVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE--------FIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~--------~~~~~l~~~~~~~~~~~~~~ 215 (267)
+|||.++. .+++.+ ..|+..+.... .+.|+++|+||+||.+..... ...+...+
T Consensus 78 lvyd~~~~-~Sf~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~------------ 140 (176)
T cd04133 78 LAFSLISR-ASYENVLKKWVPELRHYA----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE------------ 140 (176)
T ss_pred EEEEcCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH------------
Confidence 99999997 789887 67888876542 579999999999996532100 00001111
Q ss_pred ccccccccccCCCCCCCccccccccee-EEEEeeeccCc-chhHHHHHHhh
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+.+ ..+. .|+||||++|+ ++++++.+.+.
T Consensus 141 -------------------~a~-~~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 141 -------------------LRK-QIGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred -------------------HHH-HcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 111 1223 59999999999 99999988875
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=184.63 Aligned_cols=163 Identities=21% Similarity=0.368 Sum_probs=120.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+||+++|++|+|||||++++..+.+. ...+++.. . .... ....+.+++|||||+..++..+..+++++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~---~--~~~~--~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad 82 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGF---N--VETV--TYKNISFTVWDVGGQDKIRPLWRHYYTNTQ 82 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCcccc---c--eEEE--EECCEEEEEEECCCChhhHHHHHHHhCCCC
Confidence 45689999999999999999999876652 22222211 1 1111 123478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+|+++. .+++....++..++..... .+.|+++|+||+|+......+++.+.+.. ..
T Consensus 83 ~ii~v~D~t~~-~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~-------------- 143 (175)
T smart00177 83 GLIFVVDSNDR-DRIDEAREELHRMLNEDEL--RDAVILVFANKQDLPDAMKAAEITEKLGL--HS-------------- 143 (175)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHhhCHhh--cCCcEEEEEeCcCcccCCCHHHHHHHhCc--cc--------------
Confidence 99999999987 6788888898888764321 46899999999999765444333222110 00
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
. ....+.++++||++|+ ++++++||.+++.
T Consensus 144 -------------~--~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 144 -------------I--RDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred -------------c--CCCcEEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 0 0234568899999999 9999999998764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-27 Score=182.57 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=119.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+...+.++. +.++.......++..+.+++|||||++++...+..+++++|+++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l 78 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV---GIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---eeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEE
Confidence 589999999999999999999988754443333 22233333333555678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||.++. .+++.+..|+..+.... ....|+++|+||+|+....... .+...+..+
T Consensus 79 ~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~------------------ 134 (165)
T cd01865 79 LMYDITNE-ESFNAVQDWSTQIKTYS---WDNAQVILVGNKCDMEDERVVS--SERGRQLAD------------------ 134 (165)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCCEEEEEECcccCcccccC--HHHHHHHHH------------------
Confidence 99999987 78888999988876532 2578999999999997543221 011111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|. +++++++|.+.+
T Consensus 135 --------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 135 --------------QLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred --------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=181.80 Aligned_cols=157 Identities=20% Similarity=0.376 Sum_probs=114.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|.+|||||||++++..+.+.. ..++... . ... +....+.+++|||||++++...+..+++++|++|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~---~--~~~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i 72 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF---N--VET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 72 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCc---c--eEE--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 389999999999999999998776532 2222211 1 111 1223478999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
||+|+++. .++.....++..++.... ..+.|+++|+||+|+.......++.+.+. ++.
T Consensus 73 ~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~----------------- 130 (159)
T cd04150 73 FVVDSNDR-ERIGEAREELQRMLNEDE--LRDAVLLVFANKQDLPNAMSAAEVTDKLG--LHS----------------- 130 (159)
T ss_pred EEEeCCCH-HHHHHHHHHHHHHHhcHH--hcCCCEEEEEECCCCCCCCCHHHHHHHhC--ccc-----------------
Confidence 99999986 678888888888876432 14689999999999965433322222110 000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
. ....+.++++||++|+ ++++++||.+
T Consensus 131 ----------~--~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 131 ----------L--RNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred ----------c--CCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 0 0234578899999999 9999999976
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=182.36 Aligned_cols=157 Identities=15% Similarity=0.209 Sum_probs=117.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||+++++.+.+.....++.... +.......++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE---VHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAI 77 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeE---EEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEE
Confidence 489999999999999999999877654444433221 21111222455678999999999998888889999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+..+.... .++|+++|+||+|+.......+.. + +..
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~piiiv~nK~Dl~~~~~~~~~~----~-~~~----------------- 130 (166)
T cd00877 78 IMFDVTSR-VTYKNVPNWHRDLVRVC----GNIPIVLCGNKVDIKDRKVKAKQI----T-FHR----------------- 130 (166)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC----CCCcEEEEEEchhcccccCCHHHH----H-HHH-----------------
Confidence 99999987 78888888988887653 379999999999997332211110 0 000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|+ ++++++||.+.+
T Consensus 131 --------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 131 --------------KKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred --------------HcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 234579999999999 999999998764
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=186.10 Aligned_cols=172 Identities=13% Similarity=0.186 Sum_probs=120.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|+.|||||||++++..+.+...+.+++.. .+. ....+++..+.+++|||+|+++++.++..+++++|++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~---~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ 78 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD---NYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVF 78 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe---eeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEE
Confidence 469999999999999999999998876555444421 222 2233467778999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 144 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
|+|||+++. .+++.+. .|+..+... ..+.|+++|+||.||.......+ .+.+ . ....++..+..
T Consensus 79 ilvydit~~-~Sf~~~~~~w~~~i~~~----~~~~piilvgNK~DL~~~~~~~~---~~~~----~--~~~~v~~~~~~- 143 (191)
T cd01875 79 IICFSIASP-SSYENVRHKWHPEVCHH----CPNVPILLVGTKKDLRNDADTLK---KLKE----Q--GQAPITPQQGG- 143 (191)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEEeChhhhcChhhHH---HHhh----c--cCCCCCHHHHH-
Confidence 999999997 7888886 466655543 25799999999999965432111 0000 0 00000000000
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+....+.+.|+++||++|+ +++++++|.+.+
T Consensus 144 -----------~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 144 -----------ALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred -----------HHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 01111223579999999999 999999998753
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=180.23 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=119.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
++|+++|++|+|||||++++.++.+.....++.. .++......+++..+.+++|||+|++++...+..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 77 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG---VDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIF 77 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee---eEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEE
Confidence 4899999999999999999999887544433332 2232233334555678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||+++. .+++.+..|+.++.... ..+.|+++|+||.|+....... +....+.+
T Consensus 78 ~v~d~~~~-~sf~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-------------------- 133 (161)
T cd04117 78 LVYDISSE-RSYQHIMKWVSDVDEYA---PEGVQKILIGNKADEEQKRQVGDEQGNKLAK-------------------- 133 (161)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCCCHHHHHHHHH--------------------
Confidence 99999987 78999999988876542 2578999999999997544321 11111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+..|+++||++|. ++++++||.+.
T Consensus 134 ---------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 134 ---------------EYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ---------------HcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 122468999999999 99999999864
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=183.20 Aligned_cols=162 Identities=15% Similarity=0.219 Sum_probs=120.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|.+|||||||++++.++.+...+.++.. .++......+++..+.+++|||||++++...+..+++++|++++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~---~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il 78 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG---VDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIII 78 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee---eEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEE
Confidence 799999999999999999999887655444432 23333333445666889999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|||+++. .++.....|+..+.+... ....|+++|+||+|+..........+.......
T Consensus 79 v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~------------------- 136 (170)
T cd04108 79 VFDLTDV-ASLEHTRQWLEDALKEND--PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA------------------- 136 (170)
T ss_pred EEECcCH-HHHHHHHHHHHHHHHhcC--CCCCeEEEEEEChhcCccccccccHHHHHHHHH-------------------
Confidence 9999886 678888899988876432 245789999999998644321111111111111
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 137 -------------~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 137 -------------EMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred -------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999987753
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-27 Score=184.36 Aligned_cols=164 Identities=22% Similarity=0.381 Sum_probs=119.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.++.+||+++|++|||||||++++..+.+.. ..++. + ..... ++...+.+++|||||++.++..+..+++++
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~----~-~~~~~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~a 85 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTI----G-FNVET--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNT 85 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCcc----c-cceEE--EEECCEEEEEEECCCCHhHHHHHHHHhcCC
Confidence 4566899999999999999999998776532 22222 1 11111 223447899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|+|+|+++. .++.....++.+++.... ..+.|+++|+||.|+.......++.+.+.. ..
T Consensus 86 d~iI~v~D~t~~-~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~l~~--~~------------- 147 (182)
T PTZ00133 86 NGLIFVVDSNDR-ERIGDAREELERMLSEDE--LRDAVLLVFANKQDLPNAMSTTEVTEKLGL--HS------------- 147 (182)
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHhCHh--hcCCCEEEEEeCCCCCCCCCHHHHHHHhCC--Cc-------------
Confidence 999999999986 678888888888765422 146899999999999765444332221110 00
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. ..++.++++||++|+ ++++++||.+.+.
T Consensus 148 --------------~~--~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 148 --------------VR--QRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred --------------cc--CCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 00 234567899999999 9999999998754
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-27 Score=181.38 Aligned_cols=161 Identities=17% Similarity=0.285 Sum_probs=121.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|+|||||++++.++.+.....++. +.++.......++..+.+++|||||++.+...+..+++.+|++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~---~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~ 79 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI---GIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc---cceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence 4699999999999999999999988755444333 2233333334456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+....... .+.......
T Consensus 80 i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~----------------- 136 (167)
T cd01867 80 ILVYDITDE-KSFENIRNWMRNIEEHA---SEDVERMLVGNKCDMEEKRVVS--KEEGEALAD----------------- 136 (167)
T ss_pred EEEEECcCH-HHHHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCC--HHHHHHHHH-----------------
Confidence 999999987 78889999988887642 3678999999999997543211 011111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ +++++++|.+.+
T Consensus 137 ---------------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 137 ---------------EYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred ---------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=184.52 Aligned_cols=162 Identities=22% Similarity=0.396 Sum_probs=120.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..||+++|.+|||||||++++..+.+.. ..++. + ..... ++...+.+++|||||++.++.++..+++++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~----g-~~~~~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~ 86 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI----G-FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCc----c-eeEEE--EEECCEEEEEEECCCCHHHHHHHHHHhccCC
Confidence 456899999999999999999998766532 22222 1 11111 2234478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+|+++. +++.....++.+++.... ..+.|+++|+||+|+......+++.+.+.
T Consensus 87 ~iI~V~D~s~~-~s~~~~~~~l~~~l~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~l~------------------- 144 (181)
T PLN00223 87 GLIFVVDSNDR-DRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLG------------------- 144 (181)
T ss_pred EEEEEEeCCcH-HHHHHHHHHHHHHhcCHh--hCCCCEEEEEECCCCCCCCCHHHHHHHhC-------------------
Confidence 99999999987 678888888888775432 25789999999999976654433332221
Q ss_pred ccccCCCCCCCcccccc-cceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+... ...+.++++||++|+ ++++++||.+.+.
T Consensus 145 -------------l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 145 -------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred -------------ccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 0000 234467799999999 9999999988753
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=179.95 Aligned_cols=162 Identities=14% Similarity=0.234 Sum_probs=120.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|+|||||++++.++.+... ..++..........+++..+.+++|||||+.++..++..+++.+|++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 77 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD----YDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGF 77 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcc----cCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEE
Confidence 46999999999999999999998765332 23333322233334466667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+........ +...+...
T Consensus 78 ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~Dl~~~~~~~~--~~~~~~~~----------------- 135 (164)
T cd04145 78 LLVFSVTDR-GSFEEVDKFHTQILRVKD--RDEFPMILVGNKADLEHQRKVSR--EEGQELAR----------------- 135 (164)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhC--CCCCCEEEEeeCccccccceecH--HHHHHHHH-----------------
Confidence 999999987 678888888888776422 25789999999999975432110 11111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.++
T Consensus 136 ---------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 164 (164)
T cd04145 136 ---------------KLKIPYIETSAKDRLNVDKAFHDLVRVIR 164 (164)
T ss_pred ---------------HcCCcEEEeeCCCCCCHHHHHHHHHHhhC
Confidence 123468999999999 9999999988753
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=180.24 Aligned_cols=163 Identities=16% Similarity=0.252 Sum_probs=120.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|+|||||++++..+.+.....++. +.++......+++..+.+++|||||++.+...+..+++.+|+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 78 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTI---GVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANG 78 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCcc---ceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCE
Confidence 34799999999999999999999877644332222 222333334445555789999999999999889999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+....... .+......+.
T Consensus 79 ~llv~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~--------------- 137 (165)
T cd01864 79 AIIAYDITRR-SSFESVPHWIEEVEKYG---ASNVVLLLIGNKCDLEEQREVL--FEEACTLAEK--------------- 137 (165)
T ss_pred EEEEEECcCH-HHHHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccccC--HHHHHHHHHH---------------
Confidence 9999999987 67888888988887642 3678999999999997543211 0111111110
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|. +++++++|.+.+
T Consensus 138 ----------------~~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 138 ----------------NGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred ----------------cCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 122468999999999 999999998754
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-27 Score=183.83 Aligned_cols=164 Identities=18% Similarity=0.215 Sum_probs=119.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|+.|+|||||++++.++.+...+.++.. .++......+++..+.+++|||+|++.+...+..+++++|+++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g---~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ii 77 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLG---VNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAIL 77 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc---eEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEE
Confidence 4899999999999999999999887654444432 2333333445666789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+.++.... ....| ++|+||+|+........... +.+....+
T Consensus 78 lv~D~t~~-~s~~~i~~~~~~~~~~~---~~~~p-ilVgnK~Dl~~~~~~~~~~~-~~~~~~~~---------------- 135 (182)
T cd04128 78 FMFDLTRK-STLNSIKEWYRQARGFN---KTAIP-ILVGTKYDLFADLPPEEQEE-ITKQARKY---------------- 135 (182)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhC---CCCCE-EEEEEchhccccccchhhhh-hHHHHHHH----------------
Confidence 99999997 78999999998887642 24466 68899999964322111111 11111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+ ..+..++++||++|+ +++++++|.+.+
T Consensus 136 -----------a~-~~~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 136 -----------AK-AMKAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred -----------HH-HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 123578999999999 999999998753
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=182.78 Aligned_cols=161 Identities=15% Similarity=0.188 Sum_probs=119.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|.+|+|||||++++..+.+.....++. .........+++..+.+++|||||+.+++.++..+++.+|++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ 77 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI----EDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGF 77 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcc----cceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEE
Confidence 3699999999999999999999988754433333 222222234466667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|+|||+++. .+++.+..|...+.+... ..++|+++|+||+|+........ +...+..+
T Consensus 78 ilv~d~~~~-~Sf~~~~~~~~~i~~~~~--~~~~piilvgNK~Dl~~~~~v~~--~~~~~~a~----------------- 135 (172)
T cd04141 78 IICYSVTDR-HSFQEASEFKKLITRVRL--TEDIPLVLVGNKVDLESQRQVTT--EEGRNLAR----------------- 135 (172)
T ss_pred EEEEECCch-hHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhhhhcCccCH--HHHHHHHH-----------------
Confidence 999999997 788888877665544321 25799999999999865432211 01111001
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|++|||++|. ++++++||...+
T Consensus 136 ---------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 136 ---------------EFNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ---------------HhCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 224579999999999 999999998764
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-27 Score=189.74 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=121.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|.+|||||||++++..+.+.....+++.. ++.......++..+.+.+|||||++++...+..+++.+|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 87 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccce---eEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHccccc
Confidence 46679999999999999999999988775544443322 222222223445579999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|||+++. .+++.+..|+..+.... .++|+++|+||+|+....... +.+ + +..
T Consensus 88 ~~ilvfD~~~~-~s~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~---~~~-~-~~~-------------- 143 (219)
T PLN03071 88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKA---KQV-T-FHR-------------- 143 (219)
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhC----CCCcEEEEEEchhhhhccCCH---HHH-H-HHH--------------
Confidence 99999999997 78999999998887642 579999999999986432111 111 0 000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|. ++++++||.+.+
T Consensus 144 -----------------~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 144 -----------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred -----------------hcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 223578999999999 999999998765
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-27 Score=180.62 Aligned_cols=161 Identities=14% Similarity=0.222 Sum_probs=119.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.++.+.....++ ..+........++..+.+.+|||||++++...+..+++.+|+++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i 76 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPT----IEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFL 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCc----hhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEE
Confidence 48999999999999999999988765433222 22222233334566678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .+++.+..|...+.+... ..+.|+++|+||+|+........ +......+
T Consensus 77 ~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~pii~v~nK~Dl~~~~~~~~--~~~~~~~~------------------ 133 (164)
T smart00173 77 LVYSITDR-QSFEEIKKFREQILRVKD--RDDVPIVLVGNKCDLESERVVST--EEGKELAR------------------ 133 (164)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceEcH--HHHHHHHH------------------
Confidence 99999987 678888888777765432 25789999999999975432110 11111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+.+++++||++|+ +++++++|.+.++
T Consensus 134 --------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 134 --------------QWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred --------------HcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 112578999999999 9999999998765
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=180.83 Aligned_cols=159 Identities=15% Similarity=0.220 Sum_probs=120.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|+|||||++++..+.+.....++ ...+......+++..+.+++|||||++++..++..+++++|+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 77 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPT----IEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 77 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----hhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence 58999999999999999999998775443332 22333334444666678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH-HHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||+++. .++..+..|+..+..... ..++|+++|+||+|+........ ....+. .
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piviv~nK~Dl~~~~~~~~~~~~~~~---~----------------- 134 (163)
T cd04176 78 VVYSLVNQ-QTFQDIKPMRDQIVRVKG--YEKVPIILVGNKVDLESEREVSSAEGRALA---E----------------- 134 (163)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcCccCHHHHHHHH---H-----------------
Confidence 99999997 678888888888776432 26799999999999864332111 111111 0
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+.++++||++|. ++++++||.+.+
T Consensus 135 ---------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 135 ---------------EWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ---------------HhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 112478999999999 999999998865
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=180.81 Aligned_cols=160 Identities=19% Similarity=0.329 Sum_probs=120.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.....++. +.++.......++..+.+++|||||++++...+..+++.+|++|
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii 79 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI---GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 79 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence 699999999999999999999887654333322 22333333444566678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. +++..+..|+..+.... ..+.|+++|+||+|+........ +.......
T Consensus 80 ~v~d~~~~-~s~~~l~~~~~~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~--~~~~~~~~------------------ 135 (166)
T cd01869 80 IVYDVTDQ-ESFNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTDKRVVDY--SEAQEFAD------------------ 135 (166)
T ss_pred EEEECcCH-HHHHhHHHHHHHHHHhC---CCCCcEEEEEEChhcccccCCCH--HHHHHHHH------------------
Confidence 99999987 68999999988876542 25789999999999865432210 11111011
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 136 --------------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 136 --------------ELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred --------------HcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 224579999999999 999999998765
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=177.56 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=129.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+|++++|+.|+|||+|+.+++...|......|+ +.++......++++.+++++|||+|++.|++....||+.+.+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~Ti---Gvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTI---GVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccccee---eeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 45799999999999999999999999876665555 556667777788999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH-HHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+|+|||++.. +++.++..||.++.++. ..+..+++++||+||...+.+.. --+.
T Consensus 82 alLVydit~r-~sF~hL~~wL~D~rq~~---~~NmvImLiGNKsDL~~rR~Vs~EEGea--------------------- 136 (216)
T KOG0098|consen 82 ALLVYDITRR-ESFNHLTSWLEDARQHS---NENMVIMLIGNKSDLEARREVSKEEGEA--------------------- 136 (216)
T ss_pred eEEEEEccch-hhHHHHHHHHHHHHHhc---CCCcEEEEEcchhhhhccccccHHHHHH---------------------
Confidence 9999999998 89999999999999874 37889999999999987654321 1111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHH
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 261 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l 261 (267)
|.. .....|.++||++++ +++.+.-.
T Consensus 137 -------------FA~-ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 137 -------------FAR-EHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred -------------HHH-HcCceeehhhhhhhhhHHHHHHHH
Confidence 111 345678899999999 88876443
|
|
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=179.85 Aligned_cols=164 Identities=14% Similarity=0.190 Sum_probs=121.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
...||+++|++|+|||||++++.++.+.....++. +.++.......++..+.+++|||||+++++.++..+++.+|+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 80 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI---GVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDC 80 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCce---eeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCE
Confidence 45799999999999999999999887754433332 222222333446667889999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCC-CCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVV-KKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|||+++. .+++.+..|..++....... ..++|+++|+||+|+.... ..++..+..+ .
T Consensus 81 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 142 (170)
T cd04116 81 CLLTFAVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----E------------- 142 (170)
T ss_pred EEEEEECCCH-HHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----H-------------
Confidence 9999999987 67888888888776643211 2578999999999986322 2222222111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|+ +.++++++.+.+
T Consensus 143 ------------------~~~~~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 143 ------------------NGDYPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred ------------------CCCCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 122368999999999 999999988653
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=179.57 Aligned_cols=161 Identities=20% Similarity=0.310 Sum_probs=120.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|+|||||+++++++.+.....++. +.++.......++..+.+++|||||++.+...+..+++.+|++|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTI---GIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVL 77 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc---ceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEE
Confidence 489999999999999999999988755433333 22233333344566689999999999999989999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCC--CCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTV--VKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|+++. .+++....|+..+...... ...+.|+++|+||+|+.... ..++..+...
T Consensus 78 lv~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------------------ 138 (168)
T cd04119 78 LVYDVTDR-QSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE------------------ 138 (168)
T ss_pred EEEECCCH-HHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH------------------
Confidence 99999987 6788888898888764320 01468999999999996422 2222111111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 139 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 ------------------SKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 122568999999999 999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=179.25 Aligned_cols=158 Identities=23% Similarity=0.356 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc-ccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGST-HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+|+++|++|||||||+++|.+..+ .....++. + +.... .....+.+++|||||+.++...+..+++.+|++|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~----g-~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 73 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTV----G-FNVES--FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGII 73 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCcc----c-cceEE--EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEE
Confidence 589999999999999999998753 22222222 2 11111 1223468999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .++.....|+..++........++|+++|+||+|+.......++.+.+..
T Consensus 74 ~v~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~--------------------- 131 (162)
T cd04157 74 FVIDSSDR-LRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGL--------------------- 131 (162)
T ss_pred EEEeCCcH-HHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCC---------------------
Confidence 99999986 56777778887776643222357999999999999765443322221110
Q ss_pred cCCCCCCCccccc-ccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 225 TLGIPGQAFSFSQ-CHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.. ....+.++++||++|+ ++++++||.+
T Consensus 132 -----------~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 132 -----------ENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred -----------ccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 00 0234578999999999 9999999975
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=178.92 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=116.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++++++.+.....++... ........+...+.+++|||||++++..+...+++.+|++|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~----~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED----TYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 77 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh----eEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE
Confidence 58999999999999999999998875544443321 11222223445578999999999999998889999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+..+.........+.|+++|+||+|+........ +.......
T Consensus 78 lv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~------------------ 136 (165)
T cd04140 78 LVYSVTSK-QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS--NEGAACAT------------------ 136 (165)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH--HHHHHHHH------------------
Confidence 99999987 6788887776655442111125789999999999965332211 00010000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ ++++++||.+.-
T Consensus 137 --------------~~~~~~~e~SA~~g~~v~~~f~~l~~~~ 164 (165)
T cd04140 137 --------------EWNCAFMETSAKTNHNVQELFQELLNLE 164 (165)
T ss_pred --------------HhCCcEEEeecCCCCCHHHHHHHHHhcc
Confidence 123478999999999 999999998753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=184.44 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=121.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||++++.+..+...+.++. +.++......+++..+.+.+|||||++.++..+..+++.+|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI---GVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccc---cceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 46799999999999999999999987654333333 223333333345666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|||+++. .+++.+..|+..+.... ...|+++|+||+|+........ +...+...
T Consensus 82 iilv~D~~~~-~s~~~~~~~~~~i~~~~----~~~piivVgNK~Dl~~~~~~~~--~~~~~~~~---------------- 138 (199)
T cd04110 82 VIVVYDVTNG-ESFVNVKRWLQEIEQNC----DDVCKVLVGNKNDDPERKVVET--EDAYKFAG---------------- 138 (199)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccccCH--HHHHHHHH----------------
Confidence 9999999987 78888999988876542 5789999999999975433210 11111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|. ++++++||.+.+
T Consensus 139 ----------------~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 139 ----------------QMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred ----------------HcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-27 Score=169.97 Aligned_cols=158 Identities=19% Similarity=0.324 Sum_probs=133.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
++.+|+|++|+|||||+.++..+.|...+++++ +.++.+....++|..++++||||+|++.|+.+...|+++.++++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTi---GvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTI---GVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEe---eeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 367899999999999999999999988888877 77888888888999999999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||.++. .++.....|+.++..++ ...|-++|+||.|....+.+..-. ...
T Consensus 86 vVYDVTn~-ESF~Nv~rWLeei~~nc----dsv~~vLVGNK~d~~~RrvV~t~d--Ar~--------------------- 137 (198)
T KOG0079|consen 86 VVYDVTNG-ESFNNVKRWLEEIRNNC----DSVPKVLVGNKNDDPERRVVDTED--ARA--------------------- 137 (198)
T ss_pred EEEECcch-hhhHhHHHHHHHHHhcC----ccccceecccCCCCccceeeehHH--HHH---------------------
Confidence 99999998 78999999999999876 478889999999997665432111 000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
|.. ..++++||+||+..+ +++.+..|.+.
T Consensus 138 ----------~A~-~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 138 ----------FAL-QMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ----------HHH-hcCchheehhhhhcccchHHHHHHHHH
Confidence 110 456789999999999 99988877654
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=186.60 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=119.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC-CccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+||+++|++|||||||+++|.++.+...+.++.. .++......++ +..+.+++|||||+..+...+..+++.+|++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~---~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~i 77 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIG---LDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAV 77 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee---EEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEE
Confidence 4899999999999999999998877554433332 22322233332 3457899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|+|||+++. .+++.+..|+..+.........+.|+++|+||+|+...+... .+......+
T Consensus 78 ilV~D~t~~-~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~~----------------- 137 (215)
T cd04109 78 FLVYDVTNS-QSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK--DDKHARFAQ----------------- 137 (215)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC--HHHHHHHHH-----------------
Confidence 999999987 788888888888776432112457899999999996433211 111111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 138 ---------------~~~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 138 ---------------ANGMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred ---------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=182.60 Aligned_cols=162 Identities=13% Similarity=0.175 Sum_probs=120.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|+|||||++++.++.+.....++. .........+++..+.+++|||||++++..++..+++.+|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ 79 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI----EDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQG 79 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch----hhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCE
Confidence 46799999999999999999999987654333322 22222233345666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|||+++. .+++....|+..+..... ..+.|+++|+||+|+........ +...+...
T Consensus 80 iilv~D~s~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~i~~--~~~~~~~~---------------- 138 (189)
T PTZ00369 80 FLCVYSITSR-SSFEEIASFREQILRVKD--KDRVPMILVGNKCDLDSERQVST--GEGQELAK---------------- 138 (189)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCH--HHHHHHHH----------------
Confidence 9999999997 678888888888776422 25789999999999865432211 01111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ ++++++||.+.+
T Consensus 139 ----------------~~~~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 139 ----------------SFGIPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred ----------------HhCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 113468999999999 999999998764
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=179.33 Aligned_cols=158 Identities=23% Similarity=0.363 Sum_probs=117.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|||||||++++.+..+.. ..++... .... ++...+.+++|||||+.+++..+..+++.+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~-----~~~~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 72 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGF-----NVET--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVF 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCce-----eEEE--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEE
Confidence 68999999999999999999876532 2222211 1111 22344789999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|+++. .++.....|+.++++.... .+.|+++|+||+|+......++..+.+.
T Consensus 73 V~D~s~~-~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~----------------------- 126 (169)
T cd04158 73 VVDSSHR-DRVSEAHSELAKLLTEKEL--RDALLLIFANKQDVAGALSVEEMTELLS----------------------- 126 (169)
T ss_pred EEeCCcH-HHHHHHHHHHHHHhcChhh--CCCCEEEEEeCcCcccCCCHHHHHHHhC-----------------------
Confidence 9999987 6788999999998865321 4689999999999975544443332221
Q ss_pred CCCCCCCccccc--ccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 226 LGIPGQAFSFSQ--CHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 226 ~~~~~~~~~~~~--~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
... ....+.++++||++|. ++++++||.+.+.
T Consensus 127 ---------~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 127 ---------LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred ---------CccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 000 0224578899999999 9999999987653
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=183.90 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|.+|||||||+++|..+.+.....++ ..........+++..+.+++|||||++++...+..+++.+|++|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t----~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPT----IEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFIL 76 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCc----hHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEE
Confidence 5899999999999999999988765433322 222222223345666789999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|||+++. .+++.+..|+..+.........+.|+++|+||+|+........ +...+...
T Consensus 77 v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~------------------- 134 (190)
T cd04144 77 VYSITSR-STFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST--EEGAALAR------------------- 134 (190)
T ss_pred EEECCCH-HHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH--HHHHHHHH-------------------
Confidence 9999987 6788888888777653221125789999999999965332211 01111111
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ ++++++||.+.+
T Consensus 135 -------------~~~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 135 -------------RLGCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred -------------HhCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999999998754
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-27 Score=171.84 Aligned_cols=162 Identities=22% Similarity=0.269 Sum_probs=128.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|.+|+|||||+-++..+.|.+...+++ +.++.+....++++.+++.+|||+|+++|+.+.+.|++++.+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tI---GvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTI---GVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCcee---eeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 34799999999999999999999998876655556 678899999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|||++.. +++..+..|+.++-...- ..++-.++|+||+|....+.+.. ++=-
T Consensus 87 iIlVYDVT~R-dtf~kLd~W~~Eld~Yst--n~diikmlVgNKiDkes~R~V~r--eEG~-------------------- 141 (209)
T KOG0080|consen 87 IILVYDVTSR-DTFVKLDIWLKELDLYST--NPDIIKMLVGNKIDKESERVVDR--EEGL-------------------- 141 (209)
T ss_pred eEEEEEccch-hhHHhHHHHHHHHHhhcC--CccHhHhhhcccccchhcccccH--HHHH--------------------
Confidence 9999999987 789999999988866432 36777899999999764332211 0000
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.|.. ....-|+||||++.+ +..-++-|.++
T Consensus 142 -----------kfAr-~h~~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 142 -----------KFAR-KHRCLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred -----------HHHH-hhCcEEEEcchhhhccHHHHHHHHHHH
Confidence 0111 345579999999999 76666655554
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=178.64 Aligned_cols=161 Identities=31% Similarity=0.472 Sum_probs=127.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+..+|+++|+.||||||+++++..+.... ..|+.+ +....... ..+.+.+||.+|+..+++.|+.|++.+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g-~~~~~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~ 82 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIG-FNIEEIKY--KGYSLTIWDLGGQESFRPLWKSYFQNA 82 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESS-EEEEEEEE--TTEEEEEEEESSSGGGGGGGGGGHTTE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccc-cccceeee--CcEEEEEEeccccccccccceeecccc
Confidence 4788999999999999999999998765322 222222 22222222 346899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|||+|+++. +.+.+....+.+++..... .++|+++++||+|+......+++.+.+.-
T Consensus 83 ~~iIfVvDssd~-~~l~e~~~~L~~ll~~~~~--~~~piLIl~NK~D~~~~~~~~~i~~~l~l----------------- 142 (175)
T PF00025_consen 83 DGIIFVVDSSDP-ERLQEAKEELKELLNDPEL--KDIPILILANKQDLPDAMSEEEIKEYLGL----------------- 142 (175)
T ss_dssp SEEEEEEETTGG-GGHHHHHHHHHHHHTSGGG--TTSEEEEEEESTTSTTSSTHHHHHHHTTG-----------------
T ss_pred ceeEEEEecccc-eeecccccchhhhcchhhc--ccceEEEEeccccccCcchhhHHHhhhhh-----------------
Confidence 999999999986 6789999999999986543 68999999999999887777665544331
Q ss_pred cccccCCCCCCCcccccc--cceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 221 TNDFTLGIPGQAFSFSQC--HNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+ ...+.+++|||.+|+ +.+.++||.+.
T Consensus 143 ---------------~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 143 ---------------EKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ---------------GGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ---------------hhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 111 467789999999999 99999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=176.53 Aligned_cols=159 Identities=15% Similarity=0.218 Sum_probs=118.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.+..+.....++. +.++.......++..+.+++|||||+..+...+..+++.+|+++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii 77 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATI---GIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCce---eeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 489999999999999999999887643222211 22333333334555578999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|+|++++ .+++.+..|+..+.... ..+.|+++|+||+|+..... ..+....+. .
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iilv~nK~D~~~~~~~~~~~~~~~~---~----------------- 133 (161)
T cd01861 78 VVYDITNR-QSFDNTDKWIDDVRDER---GNDVIIVLVGNKTDLSDKRQVSTEEGEKKA---K----------------- 133 (161)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhC---CCCCEEEEEEEChhccccCccCHHHHHHHH---H-----------------
Confidence 99999987 67888889988877642 23699999999999953321 111111111 1
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 134 ---------------~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 134 ---------------ELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred ---------------HhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 123578999999999 999999998764
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-26 Score=178.92 Aligned_cols=160 Identities=22% Similarity=0.354 Sum_probs=117.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||++++..+.+.. ..++...+.. .. ......+.+|||||+..+...+..+++++|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-----~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 84 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-----EI--VYKNIRFLMWDIGGQESLRSSWNTYYTNTD 84 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-----EE--EECCeEEEEEECCCCHHHHHHHHHHhhcCC
Confidence 457899999999999999999999877543 2222222111 11 122468999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....++.+++.... ..++|+++++||+|+......+++.+.+.. ..
T Consensus 85 ~vi~V~D~s~~-~~~~~~~~~l~~~~~~~~--~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~--~~-------------- 145 (174)
T cd04153 85 AVILVIDSTDR-ERLPLTKEELYKMLAHED--LRKAVLLVLANKQDLKGAMTPAEISESLGL--TS-------------- 145 (174)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHhchh--hcCCCEEEEEECCCCCCCCCHHHHHHHhCc--cc--------------
Confidence 99999999986 567777788888876432 156899999999999764444333222110 00
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.. ..++.++++||++|+ ++++++||..
T Consensus 146 -------------~~--~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 146 -------------IR--DHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred -------------cc--CCceEEEecccCCCCCHHHHHHHHhc
Confidence 00 234578999999999 9999999975
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=177.80 Aligned_cols=161 Identities=20% Similarity=0.298 Sum_probs=120.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|||||||++++.++.+.....++. +.++.......++..+.+++|||||+..+...+..+++.++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTI---GVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGA 79 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc---ceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEE
Confidence 3699999999999999999999887643333222 2233333333456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+....... .+...+...
T Consensus 80 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~pi~vv~nK~Dl~~~~~~~--~~~~~~~~~----------------- 136 (165)
T cd01868 80 LLVYDITKK-QTFENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVP--TEEAKAFAE----------------- 136 (165)
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECccccccccCC--HHHHHHHHH-----------------
Confidence 999999986 67888889988877653 2468999999999987543211 111111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+++
T Consensus 137 ---------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 137 ---------------KNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ---------------HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 123578999999999 999999998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=180.76 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=119.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecc-------cCCCccccEEEEeCCCCCCchhhHHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-------STKGKIKPVHLVDVPGHSRLRPKLDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~DtpG~~~~~~~~~~~ 136 (267)
..||+++|++|||||||++++.++.+.....++............. ...+..+.+.+|||||++++...+..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 4699999999999999999999988765544433211111111110 012345789999999999999999999
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
++++|++++|||+++. .++..+..|+..+..... ..+.|+++|+||+|+........ +...+..+
T Consensus 84 ~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~v~~--~~~~~~~~---------- 148 (180)
T cd04127 84 FRDAMGFLLIFDLTNE-QSFLNVRNWMSQLQTHAY--CENPDIVLCGNKADLEDQRQVSE--EQAKALAD---------- 148 (180)
T ss_pred hCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEeCccchhcCccCH--HHHHHHHH----------
Confidence 9999999999999986 789999999988766432 25789999999999975432211 11111111
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 149 ----------------------~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 149 ----------------------KYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred ----------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998653
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=176.42 Aligned_cols=158 Identities=21% Similarity=0.273 Sum_probs=118.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++|.++.+.....++.. ..+......+++..+.+++|||||++++...+..+++.+|+++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i 77 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG---VEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee---eeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE
Confidence 4899999999999999999998876443333221 2222222333556678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++......
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-------------------- 133 (161)
T cd04113 78 LVYDITNR-TSFEALPTWLSDARALA---SPNIVVILVGNKSDLADQREVTFLEASRFAQ-------------------- 133 (161)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEEchhcchhccCCHHHHHHHHH--------------------
Confidence 99999997 67888888888775432 36889999999999975322 111111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++++.+.+
T Consensus 134 ----------------~~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 134 ----------------ENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred ----------------HcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 122579999999999 999999998754
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=179.35 Aligned_cols=161 Identities=22% Similarity=0.340 Sum_probs=117.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||++++.+..+. . +.++.+ +......++ .+.+++|||||+..++..+..+++.+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~----~~~t~g-~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-T----ISPTLG-FQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFEST 82 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-C----cCCccc-cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 456789999999999999999999987542 1 222221 112222222 36899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.++. .
T Consensus 83 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~------------ 143 (173)
T cd04154 83 DALIWVVDSSDR-LRLDDCKRELKELLQEER--LAGATLLILANKQDLPGALSEEEIREALEL----D------------ 143 (173)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECcccccCCCHHHHHHHhCc----c------------
Confidence 999999999986 578888888888765322 267999999999999765443333222210 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
......++++++||++|+ ++++++||.+
T Consensus 144 ---------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 144 ---------------KISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ---------------ccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 000235689999999999 9999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=179.71 Aligned_cols=120 Identities=17% Similarity=0.152 Sum_probs=97.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|+|||||++++..+.+...+.+++.. .+ .....+++..+.+++|||+|+++|..+...+++++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~---~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad 78 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE---NY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 78 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceee---ee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCC
Confidence 35679999999999999999999998876655444422 22 223345677789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 142 GIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
++|+|||+++. .+++.+ ..|+..+.... .+.|+++|+||+||..
T Consensus 79 ~~ilvyDit~~-~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 123 (182)
T cd04172 79 AVLICFDISRP-ETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 123 (182)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHHC----CCCCEEEEeEChhhhc
Confidence 99999999997 788887 68887776542 5789999999999854
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=176.04 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=115.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|.+|||||||++++..+.+.....++... +.......+++..+.+++|||||++.+..++..+++.+|++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYAL---TLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACI 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceee---EEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEE
Confidence 48999999999999999999988775443333322 122222334566688999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .++.....|+..+... ..+.|+++|+||+|+... . .+.......
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~i~~~----~~~~p~ivv~nK~Dl~~~--~---~~~~~~~~~------------------ 129 (161)
T cd04124 78 LVFDVTRK-ITYKNLSKWYEELREY----RPEIPCIVVANKIDLDPS--V---TQKKFNFAE------------------ 129 (161)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHh----CCCCcEEEEEECccCchh--H---HHHHHHHHH------------------
Confidence 99999986 6778888888877653 257899999999998421 1 111110000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|. ++++++.+.+.+
T Consensus 130 --------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 130 --------------KHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred --------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999998887653
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=179.26 Aligned_cols=169 Identities=16% Similarity=0.149 Sum_probs=117.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+...+.+++. ..+ .....+++..+.+++|||+|++.+......+++++|++|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~---~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i 77 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVF---ENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL 77 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceE---EEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEE
Confidence 5899999999999999999999887655444432 222 223344677789999999999999998999999999999
Q ss_pred EEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||+++. .+++.+ ..|+..+.+.. .+.|+++|+||+||..... ...+ + ... ....++.++..
T Consensus 78 lvfdit~~-~Sf~~~~~~w~~~i~~~~----~~~~iilVgnK~DL~~~~~--~~~~-~----~~~--~~~~v~~~e~~-- 141 (178)
T cd04131 78 ICFDISRP-ETLDSVLKKWRGEIQEFC----PNTKVLLVGCKTDLRTDLS--TLME-L----SHQ--RQAPVSYEQGC-- 141 (178)
T ss_pred EEEECCCh-hhHHHHHHHHHHHHHHHC----CCCCEEEEEEChhhhcChh--HHHH-H----Hhc--CCCCCCHHHHH--
Confidence 99999987 788885 78887776642 5789999999999964211 1100 0 000 00001111100
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc--chhHHHHHHh
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIRE 263 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~ 263 (267)
.+....+...|+|+||++|+ ++++++.+.+
T Consensus 142 ----------~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 142 ----------AIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred ----------HHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 01111222379999999996 9999887765
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=181.93 Aligned_cols=171 Identities=14% Similarity=0.097 Sum_probs=118.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|+|||||++++.++.+...+.++. ..........++..+.+++|||+|++++...+..+++.+|+++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~----~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~i 76 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV----FENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIM 76 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcc----eeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEE
Confidence 389999999999999999999988755433332 2122222333566678999999999999888889999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||+++. .+++.+. .|+..+... ..+.|+++|+||+|+............... ..++.++.
T Consensus 77 lv~dv~~~-~sf~~~~~~~~~~i~~~----~~~~piilvgNK~Dl~~~~~~~~~~~~~~~---------~~v~~~~~--- 139 (189)
T cd04134 77 LCFSVDSP-DSLENVESKWLGEIREH----CPGVKLVLVALKCDLREARNERDDLQRYGK---------HTISYEEG--- 139 (189)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhccChhhHHHHhhccC---------CCCCHHHH---
Confidence 99999997 6787775 577777653 257899999999999765433222111000 00000000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+....+.+.|+++||++|+ ++++++||.+.+
T Consensus 140 ---------~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 140 ---------LAVAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred ---------HHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 001111233679999999999 999999998653
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-26 Score=176.83 Aligned_cols=159 Identities=21% Similarity=0.317 Sum_probs=117.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
+|+++|++|||||||++++.+. +...+.++...+. ... ....+.+++|||||+..++..+..|++++|++|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-----~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~ 72 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-----TKL--RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVF 72 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-----EEE--EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEE
Confidence 4899999999999999999976 3333333332221 111 1234689999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|||+++. .++.....|+..++.... ..++|+++|+||+|+.......++.+.+. ++.+
T Consensus 73 V~D~s~~-~s~~~~~~~l~~l~~~~~--~~~~piliv~NK~Dl~~~~~~~~i~~~~~--l~~~----------------- 130 (167)
T cd04161 73 VVDSSDD-DRVQEVKEILRELLQHPR--VSGKPILVLANKQDKKNALLGADVIEYLS--LEKL----------------- 130 (167)
T ss_pred EEECCch-hHHHHHHHHHHHHHcCcc--ccCCcEEEEEeCCCCcCCCCHHHHHHhcC--cccc-----------------
Confidence 9999987 578888999998886532 25789999999999987766555443321 0000
Q ss_pred CCCCCCCcccccccceeEEEEeeeccC------c-chhHHHHHHh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTG------E-ISQVEQFIRE 263 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g------~-i~~l~~~l~~ 263 (267)
.++....+.+++|||++| + +.+.++||.+
T Consensus 131 ---------~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 131 ---------VNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred ---------cCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 011133567899999998 6 9999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=178.00 Aligned_cols=163 Identities=18% Similarity=0.297 Sum_probs=120.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-hhHHhhhccCCE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-PKLDEFLPQAAG 142 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~~~~~~d~ 142 (267)
.+||+++|++|+|||||++++..+.+.....++. +.++......+++..+.+++|||||+++++ ..+..+++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~ 78 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI---GVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHA 78 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccce---eEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCE
Confidence 4699999999999999999999887654433332 122333333445666889999999999886 468889999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|||++++ .++..+..|+..+..... ..++|+++|+||+|+...... ....+.+.+
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------------------ 137 (170)
T cd04115 79 VVFVYDVTNM-ASFHSLPSWIEECEQHSL--PNEVPRILVGNKCDLREQIQVPTDLAQRFAD------------------ 137 (170)
T ss_pred EEEEEECCCH-HHHHhHHHHHHHHHHhcC--CCCCCEEEEEECccchhhcCCCHHHHHHHHH------------------
Confidence 9999999987 788889898887776432 267999999999998654321 111111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeecc---Cc-chhHHHHHHhhcCC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLT---GE-ISQVEQFIREQVKP 267 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---g~-i~~l~~~l~~~~~p 267 (267)
..++.|+++||++ ++ +++++.+|.+.+++
T Consensus 138 -----------------~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~~ 170 (170)
T cd04115 138 -----------------AHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170 (170)
T ss_pred -----------------HcCCcEEEEeccCCcCCCCHHHHHHHHHHHhhC
Confidence 2235799999999 66 99999999887764
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=175.36 Aligned_cols=158 Identities=11% Similarity=0.183 Sum_probs=116.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC--CccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK--GKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
.||+++|++|+|||||++++.++.+.....++.. .++......+. +..+.+++|||||++++...+..+++.+|+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 77 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG---VDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQA 77 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEE---EEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCE
Confidence 3899999999999999999999876543333332 22222222222 455789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .++..+..|+..+.... .++|+++|+||+|+........ +...+..+
T Consensus 78 ~v~v~d~~~~-~s~~~l~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~~---------------- 134 (162)
T cd04106 78 CILVFSTTDR-ESFEAIESWKEKVEAEC----GDIPMVLVQTKIDLLDQAVITN--EEAEALAK---------------- 134 (162)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEEChhcccccCCCH--HHHHHHHH----------------
Confidence 9999999987 67888888888776532 5799999999999975432211 11111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++++||++|. ++++++||.+.
T Consensus 135 ----------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 135 ----------------RLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred ----------------HcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 123478999999999 99999999865
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-26 Score=178.55 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=117.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|+|||||++++..+.+...+.+++. ..+.. ...+++..+.+++|||+|++++...+..+++.+|++|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~---~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~i 77 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF---DNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 77 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee---eeeEE-EEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEE
Confidence 5899999999999999999999887555444442 12221 2234566688999999999999988889999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||.++. .+++.+. .|+..+... ..+.|+++|+||+|+..... ..+.+... ....++.++...
T Consensus 78 lv~d~~~~-~s~~~~~~~w~~~i~~~----~~~~piilvgnK~Dl~~~~~---~~~~l~~~------~~~~v~~~~~~~- 142 (175)
T cd01874 78 VCFSVVSP-SSFENVKEKWVPEITHH----CPKTPFLLVGTQIDLRDDPS---TIEKLAKN------KQKPITPETGEK- 142 (175)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEECHhhhhChh---hHHHhhhc------cCCCcCHHHHHH-
Confidence 99999987 7788886 476666543 25789999999999864321 11111100 000111110000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+....+.+.|++|||++|+ ++++++.+.++
T Consensus 143 -----------~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 143 -----------LARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred -----------HHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 1111234689999999999 99999888765
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=179.05 Aligned_cols=164 Identities=20% Similarity=0.342 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+|+++|++|+|||||+++|.+....... ...+.++.. ....... .....+++|||||+..+...+..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~-~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVG-LNIGTIE--VGNARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccc-cceEEEE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 5899999999999999999864321100 011111111 1111111 2246899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. .++.....++..+++... ..+.|+++|+||+|+......++..+.+......+
T Consensus 78 v~vvd~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~--------------- 139 (167)
T cd04160 78 IYVIDSTDR-ERFEESKSALEKVLRNEA--LEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEI--------------- 139 (167)
T ss_pred EEEEECchH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEEccccccCCCHHHHHHHhccccccc---------------
Confidence 999999886 567778888888776432 25799999999999976555444433333211100
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
-...++++++||++|+ ++++++||.++
T Consensus 140 --------------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 140 --------------GRRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred --------------cCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence 0234689999999999 99999999763
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-26 Score=177.23 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=116.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+|++++|.+|||||||+.++..+.+...+.++... .......+++..+.+++|||||++.+...+..+++++|++|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~----~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD----NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 77 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee----eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEE
Confidence 58999999999999999999998875544444321 11112234666788999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|||+++. ++++.+. .|+..+... ..+.|+++|+||+|+..... .+...+. ....++..+..+
T Consensus 78 lv~d~~~~-~sf~~~~~~~~~~~~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~----------~~~~v~~~~~~~ 142 (174)
T cd01871 78 ICFSLVSP-ASFENVRAKWYPEVRHH----CPNTPIILVGTKLDLRDDKDTIEKLKEK----------KLTPITYPQGLA 142 (174)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEeeChhhccChhhHHHHhhc----------cCCCCCHHHHHH
Confidence 99999997 7888885 466655443 25799999999999964321 1111000 000011100000
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+....+...|+||||++|+ ++++++.+.+.
T Consensus 143 ------------~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 143 ------------MAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ------------HHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 1111223579999999999 99999998764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-26 Score=178.27 Aligned_cols=169 Identities=21% Similarity=0.300 Sum_probs=121.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|||||||++++.++.+.. ..++..++.. .... .++.+.+|||||+..++..+..+++.+|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~-----~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad 86 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSE-----ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVN 86 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceE-----EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 567899999999999999999999876532 2222222211 1111 2368999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....++.++++... ..++|+++|+||+|+....+.+++.+.+.- .+. ..+.
T Consensus 87 ~ii~vvD~~~~-~~~~~~~~~l~~l~~~~~--~~~~piliv~NK~Dl~~~~~~~~i~~~l~l--~~~--~~~~------- 152 (184)
T smart00178 87 GIVYLVDAYDK-ERFAESKRELDALLSDEE--LATVPFLILGNKIDAPYAASEDELRYALGL--TNT--TGSK------- 152 (184)
T ss_pred EEEEEEECCcH-HHHHHHHHHHHHHHcChh--hcCCCEEEEEeCccccCCCCHHHHHHHcCC--Ccc--cccc-------
Confidence 99999999986 667888888888776432 257899999999999766566554443320 000 0000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
-+.-...+.+++|||++|+ ++++.+||.+++
T Consensus 153 -------------~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 153 -------------GKVGVRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred -------------cccCCceeEEEEeecccCCChHHHHHHHHhhC
Confidence 0001246679999999999 999999998763
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=176.20 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=119.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|+|||||++++.+..+.....++. +.++.......++....+.+|||||++++......+++.+|++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3699999999999999999999887533322222 2223223333455567899999999999988899999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+++. .++..+..|+.++.... ..+.|+++|+||+|+..... .++.... ..
T Consensus 81 l~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~----~~--------------- 137 (168)
T cd01866 81 LLVYDITRR-ETFNHLTSWLEDARQHS---NSNMTIMLIGNKCDLESRREVSYEEGEAF----AK--------------- 137 (168)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCCHHHHHHH----HH---------------
Confidence 999999986 78899999998886642 26799999999999974322 2221111 11
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ ++++++++.+.+
T Consensus 138 -----------------~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 138 -----------------EHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-26 Score=179.51 Aligned_cols=160 Identities=19% Similarity=0.308 Sum_probs=118.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccc-eeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG-TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+||+++|++|||||||++++.++.+... ..++. +.++......+++..+.+++|||||+.++...+..+++.+|++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 77 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATV---GIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHAL 77 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcc---cceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEE
Confidence 4899999999999999999998876432 22222 2223322334456668899999999999988889999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+....... .+...+...
T Consensus 78 i~v~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~~~--~~~~~~l~~----------------- 134 (191)
T cd04112 78 LLLYDITNK-ASFDNIRAWLTEIKEYA---QEDVVIMLLGNKADMSGERVVK--REDGERLAK----------------- 134 (191)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEEcccchhccccC--HHHHHHHHH-----------------
Confidence 999999987 67888888888877642 2578999999999996432211 011111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....|+++||++|+ +++++++|.+.+
T Consensus 135 ---------------~~~~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 135 ---------------EYGVPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred ---------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112479999999999 999999998764
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=167.72 Aligned_cols=158 Identities=20% Similarity=0.306 Sum_probs=129.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
-+||+++|..|+|||+|+.+++.+-|+.+.-.++ +.++.+..+.+++..+++++|||+|+++|++....|++.++++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgati---gvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI---GVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCcee---eeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 3699999999999999999999999987766666 6778888889999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
|+|||++.. .+++-+.+|+.++-+.++ .+.--|+|+||+|+.+.+. ++.+.+.+.+.
T Consensus 84 ilvydiscq-psfdclpewlreie~yan---~kvlkilvgnk~d~~drrevp~qigeefs~~------------------ 141 (213)
T KOG0095|consen 84 ILVYDISCQ-PSFDCLPEWLREIEQYAN---NKVLKILVGNKIDLADRREVPQQIGEEFSEA------------------ 141 (213)
T ss_pred EEEEecccC-cchhhhHHHHHHHHHHhh---cceEEEeeccccchhhhhhhhHHHHHHHHHh------------------
Confidence 999999986 689999999999987643 5566799999999976643 23333333321
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...-|+|+||+..+ ++.|+.-+.-
T Consensus 142 -----------------qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 142 -----------------QDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred -----------------hhhhhhhhcccchhhHHHHHHHHHH
Confidence 22347889999888 8888765543
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=176.76 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=129.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++++|||-|+.++..+.|.-...+++ +.++......++++.++.+||||+|+++|+.....|++++.+
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTI---Gvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTI---GVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccce---eEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 45799999999999999999999999866655556 566777777889999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|||++.. .+++.+..|+.++..+.. .++++++|+||+||...+.+. +..+.+.+
T Consensus 90 AllVYDITr~-~Tfenv~rWL~ELRdhad---~nivimLvGNK~DL~~lraV~te~~k~~Ae------------------ 147 (222)
T KOG0087|consen 90 ALLVYDITRR-QTFENVERWLKELRDHAD---SNIVIMLVGNKSDLNHLRAVPTEDGKAFAE------------------ 147 (222)
T ss_pred eEEEEechhH-HHHHHHHHHHHHHHhcCC---CCeEEEEeecchhhhhccccchhhhHhHHH------------------
Confidence 9999999987 789999999999999864 799999999999997644321 11111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHH
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 261 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l 261 (267)
.+...|+++||..+. +++.++-+
T Consensus 148 -----------------~~~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 148 -----------------KEGLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred -----------------hcCceEEEecccccccHHHHHHHH
Confidence 345679999999998 77766544
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=185.28 Aligned_cols=163 Identities=17% Similarity=0.238 Sum_probs=120.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|+|||||+++++++.+...+.+++ .++......+++..+.++||||+|++.+..+...++..+|++|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi----~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iI 76 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI----EDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFI 76 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh----hHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 489999999999999999999888755433333 3333334445677789999999999999888888899999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCC------CCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNST------VVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
+|||+++. .+++.+..|+.++..... ....+.|+++|+||+|+...... ..+.+.+.+..
T Consensus 77 lVfdv~~~-~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~~~----------- 142 (247)
T cd04143 77 LVFSLDNR-ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLVGG----------- 142 (247)
T ss_pred EEEeCCCH-HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc--CHHHHHHHHHh-----------
Confidence 99999987 789988888888865311 01257899999999999742221 11112211110
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+..
T Consensus 143 --------------------~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 143 --------------------DENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred --------------------cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 124579999999999 999999998753
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=181.51 Aligned_cols=161 Identities=14% Similarity=0.243 Sum_probs=119.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-CCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
.+||+++|++|+|||||+++|.++.+.....++. +.++......+ ++..+.+++|||||++.+...+..+++.+|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti---~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTV---GVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVG 78 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcee---ceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcE
Confidence 4699999999999999999999987654433332 22222222222 3555789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|||+++. .+++.+..|+.++..... ....|+++|+||+|+...... .+..+.+. .
T Consensus 79 iilv~D~~~~-~Sf~~l~~~~~~i~~~~~--~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~---~--------------- 137 (211)
T cd04111 79 VLLVFDITNR-ESFEHVHDWLEEARSHIQ--PHRPVFILVGHKCDLESQRQVTREEAEKLA---K--------------- 137 (211)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCeEEEEEEccccccccccCHHHHHHHH---H---------------
Confidence 9999999997 789999999998876532 246788999999999753321 11111111 1
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ +++++++|.+.+
T Consensus 138 -----------------~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 138 -----------------DLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred -----------------HhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998754
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=181.19 Aligned_cols=152 Identities=15% Similarity=0.230 Sum_probs=115.7
Q ss_pred EcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeC
Q 024474 70 AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA 149 (267)
Q Consensus 70 ~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~ 149 (267)
+|.+|||||||+++++.+.+...+.+++. .++......+++..+.+.+|||+|+++++.++..+++++|++|+|||+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig---~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~ 77 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLG---VEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 77 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCcee---EEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEEC
Confidence 59999999999999998876544444332 223222333456678999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCC
Q 024474 150 LEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIP 229 (267)
Q Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (267)
++. .++..+..|+.++.+.. .++|+++|+||+|+....... +.+ + +..
T Consensus 78 t~~-~S~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~---~~~-~-~~~---------------------- 125 (200)
T smart00176 78 TAR-VTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDVKDRKVKA---KSI-T-FHR---------------------- 125 (200)
T ss_pred CCh-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCH---HHH-H-HHH----------------------
Confidence 997 78899989998887642 579999999999985422111 111 0 000
Q ss_pred CCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 230 GQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|++|||++|+ |+++++||.+.+
T Consensus 126 ---------~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 126 ---------KKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred ---------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 234579999999999 999999998754
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=173.27 Aligned_cols=159 Identities=23% Similarity=0.321 Sum_probs=117.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+.+|||||+..+......+++.+|+++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 77 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATI---GVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVI 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcc---cceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEE
Confidence 489999999999999999999887543222222 22233333333555678999999999999888899999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|+|+++. .+++....|+..+..... ..+.|+++|+||+|+.... ..++..+.. .
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~~~~iv~nK~D~~~~~~~~~~~~~~~----~----------------- 133 (161)
T cd01863 78 LVYDVTRR-DTFTNLETWLNELETYST--NNDIVKMLVGNKIDKENREVTREEGLKFA----R----------------- 133 (161)
T ss_pred EEEECCCH-HHHHhHHHHHHHHHHhCC--CCCCcEEEEEECCcccccccCHHHHHHHH----H-----------------
Confidence 99999987 678888888877766532 3679999999999997332 222211111 1
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++++.+.+
T Consensus 134 ---------------~~~~~~~~~Sa~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 134 ---------------KHNMLFIETSAKTRDGVQQAFEELVEKI 161 (161)
T ss_pred ---------------HcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence 224579999999999 999999988753
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=182.44 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=97.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|||||||++++..+.|...+.+++. ..+.. ...+++..+.+++|||+|++.|..+...+++++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~---~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF---ENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCcee---eeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 467999999999999999999999888665555442 22322 23446777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 143 IVFVVDALEFLPNCSA-ASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+|+|||+++. .+++. ...|+.++.... .+.|+++|+||+||..
T Consensus 88 vIlVyDit~~-~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 131 (232)
T cd04174 88 VLLCFDISRP-ETVDSALKKWKAEIMDYC----PSTRILLIGCKTDLRT 131 (232)
T ss_pred EEEEEECCCh-HHHHHHHHHHHHHHHHhC----CCCCEEEEEECccccc
Confidence 9999999987 78887 478888776542 4689999999999854
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=173.23 Aligned_cols=159 Identities=19% Similarity=0.265 Sum_probs=120.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++++++.+.....++. +..+......+++..+.+.+|||||++++...+..+++.+|+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 78 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTI---GAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE
Confidence 589999999999999999999988644222222 22233333344566678999999999988888889999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+++. .++.....|+..+.... ..+.|+++|+||+|+.... ..++..+. ..
T Consensus 79 ~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~----~~---------------- 134 (163)
T cd01860 79 VVYDITSE-ESFEKAKSWVKELQRNA---SPNIIIALVGNKADLESKRQVSTEEAQEY----AD---------------- 134 (163)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECccccccCcCCHHHHHHH----HH----------------
Confidence 99999987 67888888888887653 2678999999999987432 22221111 11
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|. +++++++|.+.++
T Consensus 135 ----------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd01860 135 ----------------ENGLLFFETSAKTGENVNELFTEIAKKLP 163 (163)
T ss_pred ----------------HcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 112578999999999 9999999998763
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=178.15 Aligned_cols=159 Identities=18% Similarity=0.275 Sum_probs=119.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.++.+...+.++. +.++......+++..+.+++|||||++.+...+..+++.+|+++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii 77 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTI---GVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL 77 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---eeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE
Confidence 489999999999999999999988754333333 22333334444566688999999999999989999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||+++. .++..+..|+..+.... ....|+++|+||+|+....... +....+.+
T Consensus 78 lv~d~~~~-~s~~~i~~~~~~i~~~~---~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~-------------------- 133 (188)
T cd04125 78 LVYDVTDQ-ESFENLKFWINEINRYA---RENVIKVIVANKSDLVNNKVVDSNIAKSFCD-------------------- 133 (188)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECCCCcccccCCHHHHHHHHH--------------------
Confidence 99999987 78999999988877642 2468999999999987543211 11111110
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|. +++++++|.+.+
T Consensus 134 ---------------~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 134 ---------------SLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred ---------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999987754
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=174.18 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=118.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.....++. +.++......+.+..+.+++|||||+..+...+..+++++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 77 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI---GADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCV 77 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCcc---ceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEE
Confidence 489999999999999999999887643332222 22232233334556678899999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+|||++++ .+++....|...++..... ...++|+++|+||+|+..+. ..++....++ .
T Consensus 78 ~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~-------------- 138 (172)
T cd01862 78 LVYDVTNP-KSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----S-------------- 138 (172)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----H--------------
Confidence 99999986 5677777777766654321 12479999999999997422 2332222111 1
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+.++++||++|+ +++++++|.+.+
T Consensus 139 -----------------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 139 -----------------NGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred -----------------cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 223579999999999 999999998754
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=166.38 Aligned_cols=154 Identities=25% Similarity=0.381 Sum_probs=126.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
-+|++++|+.|+|||+|+++++..++.+....++ +.++....+.+.++.+++++|||+|+++|++..+.|++++.+.
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTi---GveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTI---GVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhccccccee---eeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 3599999999999999999999999877666666 4455566666788899999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|||++.. +++..+..|+.+....+ ..++.+++++||.||..++.+..... .+
T Consensus 86 lLVYD~Tsr-dsfnaLtnWL~DaR~lA---s~nIvviL~GnKkDL~~~R~VtflEA--s~-------------------- 139 (214)
T KOG0086|consen 86 LLVYDITSR-DSFNALTNWLTDARTLA---SPNIVVILCGNKKDLDPEREVTFLEA--SR-------------------- 139 (214)
T ss_pred EEEEeccch-hhHHHHHHHHHHHHhhC---CCcEEEEEeCChhhcChhhhhhHHHH--Hh--------------------
Confidence 999999998 89999999999987754 47888999999999987765532111 00
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHH
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVE 258 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~ 258 (267)
|.+ .+.+.+.|+||+||+ +++-+
T Consensus 140 -----------Faq-Enel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 140 -----------FAQ-ENELMFLETSALTGENVEEAF 163 (214)
T ss_pred -----------hhc-ccceeeeeecccccccHHHHH
Confidence 111 345678999999999 87654
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=176.30 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=113.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-CCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.||+++|++|+|||||++++.++.+...+.++.. ..+.. .... ++..+.+.+|||||++++...+..+++++|++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~---~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 76 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVF---ENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVL 76 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeee---eeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEE
Confidence 4899999999999999999999887554443332 12221 1222 25567899999999999999998999999999
Q ss_pred EEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH--HHHHHHHHHHHHHhhhhccccccc
Q 024474 144 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF--IRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++|||+++. .+++.+. .|+..+... ..+.|+++|+||+|+........ ..+..++....
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~------------- 138 (187)
T cd04132 77 LICYAVDNP-TSLDNVEDKWFPEVNHF----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK------------- 138 (187)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH-------------
Confidence 999999986 6788775 466655442 25789999999999965431100 01111111110
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...++++||++|+ ++++++++.+.+
T Consensus 139 ------------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 139 ------------------QGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred ------------------cCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 111268999999999 999998887653
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=181.61 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=91.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|.+|+|||||++++..+.+.. ..+++. ..+... ....+.+.+|||||++.+...+..+++.+|++|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig---~~~~~~----~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~I 72 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVG---GAFYLK----QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVI 72 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccc---eEEEEE----EeeEEEEEEEeCCCcccchhhHHHHhccCCEEE
Confidence 489999999999999999999988743 233222 222211 123467999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+|||+++. .+++.+..|+..+.+.. ..++|+++|+||+|+..
T Consensus 73 lV~Dvt~~-~Sf~~l~~~~~~l~~~~---~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 73 LTYDVSNV-QSLEELEDRFLGLTDTA---NEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECccccc
Confidence 99999997 78999988888877542 25789999999999965
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=172.53 Aligned_cols=159 Identities=18% Similarity=0.291 Sum_probs=119.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.+..+.....++. +.++.......++..+.+++||+||+..+......+++.+|+++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 77 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTI---GVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---eeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence 489999999999999999999887643322222 22222223333555578999999999998888999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|||+++. .+++.+..|+..+.... ..++|+++|+||+|+.... ..+...+.. .
T Consensus 78 lv~d~~~~-~s~~~~~~~l~~~~~~~---~~~~pivvv~nK~D~~~~~~~~~~~~~~~~----~---------------- 133 (164)
T smart00175 78 LVYDITNR-ESFENLKNWLKELREYA---DPNVVIMLVGNKSDLEDQRQVSREEAEAFA----E---------------- 133 (164)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEEchhcccccCCCHHHHHHHH----H----------------
Confidence 99999986 67888888888877653 2579999999999987532 222222111 1
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.+.
T Consensus 134 ----------------~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 134 ----------------EHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred ----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123469999999999 9999999998764
|
Rab GTPases are implicated in vesicle trafficking. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=181.06 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=122.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+++|||||++++...+..+++.+++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~---g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI---GVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---eEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 45799999999999999999999887643333322 223333344446666899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+|+|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+...... .+....+..
T Consensus 88 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~------------------ 145 (216)
T PLN03110 88 ALLVYDITKR-QTFDNVQRWLRELRDHA---DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE------------------ 145 (216)
T ss_pred EEEEEECCCh-HHHHHHHHHHHHHHHhC---CCCCeEEEEEEChhcccccCCCHHHHHHHHH------------------
Confidence 9999999987 67888889988776542 257999999999998654322 111111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+.|+++||++|+ +++++++|.+.+
T Consensus 146 -----------------~~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 146 -----------------KEGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224579999999999 999999997654
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=175.57 Aligned_cols=173 Identities=23% Similarity=0.364 Sum_probs=120.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..+|+++|++|||||||++++.++.+. ...++..++...+ .++ ...+.+|||||+..+...+..+++.+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i-----~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad 88 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEEL-----TIG--NIKFKTFDLGGHEQARRLWKDYFPEVD 88 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEE-----EEC--CEEEEEEECCCCHHHHHHHHHHhccCC
Confidence 46789999999999999999999987653 2333333322211 122 267899999999988888899999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....++.++++... ..+.|+++|+||+|+......+++.+.+.. .....+.
T Consensus 89 ~iilV~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~------- 154 (190)
T cd00879 89 GIVFLVDAADP-ERFQESKEELDSLLSDEE--LANVPFLILGNKIDLPGAVSEEELRQALGL----YGTTTGK------- 154 (190)
T ss_pred EEEEEEECCcH-HHHHHHHHHHHHHHcCcc--ccCCCEEEEEeCCCCCCCcCHHHHHHHhCc----ccccccc-------
Confidence 99999999986 567777888888876432 256899999999999765444433332221 0000000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.... -......+.+++|||++|+ ++++++||.+++
T Consensus 155 --------~~~~-~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 155 --------GVSL-KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred --------cccc-cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 0000 0001245679999999999 999999998764
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=177.83 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=112.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh--------HHhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------LDEF 136 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~~~~ 136 (267)
+||+++|.+|||||||++++.++.+...+.++.. ..........++..+.+++|||||...+... ...+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~---~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~ 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEH---RRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccc---cccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhh
Confidence 4899999999999999999999887554333321 1222222334566678999999997654221 2345
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
++.+|++|+|||++++ .+++.+..|+..+.........++|+++|+||+|+...+... .+.+++...+
T Consensus 78 ~~~ad~iilv~D~~~~-~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~~--------- 145 (198)
T cd04142 78 LRNSRAFILVYDICSP-DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVRK--------- 145 (198)
T ss_pred hccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc--HHHHHHHHHH---------
Confidence 7899999999999987 788888888887776421113679999999999996542211 1111111010
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..++.|+++||++|. ++++++.+.+.
T Consensus 146 ----------------------~~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 146 ----------------------SWKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred ----------------------hcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 124579999999999 99998877654
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=172.85 Aligned_cols=161 Identities=16% Similarity=0.211 Sum_probs=118.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.... .++...........++..+.+++|||||+.++..+++.+++.+++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~v 77 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESY----DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFL 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEE
Confidence 58999999999999999999988764332 23333222333334566678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|.++. .+++....|...+.+... ..+.|+++|+||+|+........ +......+.
T Consensus 78 lv~~~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~~----------------- 135 (168)
T cd04177 78 LVYSVTSE-ASLNELGELREQVLRIKD--SDNVPMVLVGNKADLEDDRQVSR--EDGVSLSQQ----------------- 135 (168)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhhC--CCCCCEEEEEEChhccccCccCH--HHHHHHHHH-----------------
Confidence 99999987 678888888777765321 36799999999999965432210 001110000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+.++++++||++|+ ++++++||.+++
T Consensus 136 --------------~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 136 --------------WGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred --------------cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=174.75 Aligned_cols=166 Identities=27% Similarity=0.381 Sum_probs=116.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|||||||++++..+.+... .++....... ......++..+.+.+|||||+++++..+..+++.+|++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~--~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEK--IKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeE--EEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEE
Confidence 46999999999999999999998765422 2222111111 11111134557899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. .++.....|+.++..... ..+.|+++|+||+|+......+++.+.+. ++.
T Consensus 80 i~v~D~~~~-~~~~~~~~~~~~i~~~~~--~~~~p~iiv~NK~D~~~~~~~~~~~~~~~--~~~---------------- 138 (183)
T cd04152 80 VFVVDSVDV-ERMEEAKTELHKITRFSE--NQGVPVLVLANKQDLPNALSVSEVEKLLA--LHE---------------- 138 (183)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHhhhh--cCCCcEEEEEECcCccccCCHHHHHHHhC--ccc----------------
Confidence 999999986 567777777777765422 25789999999999875433333221111 000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. ....+.++++||++|+ ++++++||.+.+
T Consensus 139 -----------~~-~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 139 -----------LS-ASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred -----------cC-CCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 00 0123568999999999 999999998764
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=172.03 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=112.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|+|||||++++..+.+.... .|+...+. ....+++..+.+.+|||+|++. ..+++.+|+++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~----~~~~~~~~-~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~i 70 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLE----SPEGGRFK-KEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVI 70 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCC----CCCccceE-EEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEE
Confidence 38999999999999999999988764432 22233332 3344567677899999999975 34678899999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||.++. .+++.+..|+.++..... ..+.|+++|+||.|+..........+..++ +.
T Consensus 71 lv~d~~~~-~sf~~~~~~~~~i~~~~~--~~~~piilvgnK~Dl~~~~~~~v~~~~~~~-~~------------------ 128 (158)
T cd04103 71 FVFSLENE-ASFQTVYNLYHQLSSYRN--ISEIPLILVGTQDAISESNPRVIDDARARQ-LC------------------ 128 (158)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEeeHHHhhhcCCcccCHHHHHH-HH------------------
Confidence 99999997 889999999988876532 256899999999998532111100111111 11
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.-..++.|+||||++|+ |+++++++.+.
T Consensus 129 ------------~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 129 ------------ADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred ------------HHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 00234679999999999 99999998765
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=172.64 Aligned_cols=156 Identities=22% Similarity=0.365 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|+|||||++++..+.+.. ..++...+ ... ++.....+++|||||+.+++..+..+++.+|++|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~-----~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 72 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFN-----VET--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIY 72 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcC-----eEE--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 68999999999999999998776532 22222111 111 12334689999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|+++. .++.....++..+++... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 73 v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~--~------------------- 128 (158)
T cd04151 73 VVDSTDR-DRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGALSEAEISEKLGL--S------------------- 128 (158)
T ss_pred EEECCCH-HHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCCCCHHHHHHHhCc--c-------------------
Confidence 9999886 456666677766655322 257899999999999755433222111100 0
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
. +. ..+.+++++||++|+ ++++++||.+
T Consensus 129 ------~--~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 129 ------E--LK--DRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred ------c--cC--CCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 0 00 224579999999999 9999999975
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=162.88 Aligned_cols=164 Identities=23% Similarity=0.378 Sum_probs=127.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
+.+..+|+++|..|+||||++++|.+... .++.|+ ..+..+... .+.+.+++||.+|+..+++.|..|+..+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt-~gf~Iktl~--~~~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-----DTISPT-LGFQIKTLE--YKGYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-----cccCCc-cceeeEEEE--ecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 45689999999999999999999998752 223332 223333333 3447899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|+|+|+++. ..+++....+.+++....+ .+.|+++++||.|+.++-..+.+...++- ..+
T Consensus 85 dglIwvvDssD~-~r~~e~~~~L~~lL~eerl--aG~~~Lvlank~dl~~~l~~~~i~~~~~L--~~l------------ 147 (185)
T KOG0073|consen 85 DGLIWVVDSSDR-MRMQECKQELTELLVEERL--AGAPLLVLANKQDLPGALSLEEISKALDL--EEL------------ 147 (185)
T ss_pred CeEEEEEECchH-HHHHHHHHHHHHHHhhhhh--cCCceEEEEecCcCccccCHHHHHHhhCH--HHh------------
Confidence 999999999987 6788888888888875543 77999999999999987777665543331 110
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+. ...++.+.|||.+|+ +.+-.+||...+
T Consensus 148 --------------~k--s~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 148 --------------AK--SHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred --------------cc--ccCceEEEEeccccccHHHHHHHHHHHH
Confidence 00 346789999999999 999999998764
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=172.63 Aligned_cols=155 Identities=23% Similarity=0.339 Sum_probs=114.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEE
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 146 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v 146 (267)
|+++|++|||||||++++.++.+.....++.... ...+++..+.+.+|||||+.+++..+..+++++|++|+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~-------~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V 74 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN-------SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc-------eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 7899999999999999999887644333333211 112344557899999999999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q 024474 147 VDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTL 226 (267)
Q Consensus 147 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (267)
||+++. .++.....|+.++.... .++|+++|+||+|+......+++.+.+.. ..
T Consensus 75 ~D~t~~-~s~~~~~~~l~~~~~~~----~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~------------------- 128 (164)
T cd04162 75 VDSADS-ERLPLARQELHQLLQHP----PDLPLVVLANKQDLPAARSVQEIHKELEL--EP------------------- 128 (164)
T ss_pred EECCCH-HHHHHHHHHHHHHHhCC----CCCcEEEEEeCcCCcCCCCHHHHHHHhCC--hh-------------------
Confidence 999986 56788888888887542 67999999999999876655443322210 00
Q ss_pred CCCCCCcccccccceeEEEEeeecc------Cc-chhHHHHHHh
Q 024474 227 GIPGQAFSFSQCHNKVSVAEASGLT------GE-ISQVEQFIRE 263 (267)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~Sa~~------g~-i~~l~~~l~~ 263 (267)
+.. ..++.++++||++ |+ +.++++.|.+
T Consensus 129 --------~~~-~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 129 --------IAR-GRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred --------hcC-CCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 100 2356678888887 88 9998887753
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=176.20 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=117.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccc-ceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQ-GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.||+++|++|+|||||+++++++.+.. .+.+++ +..+......+++..+.+++|||||++++..++..+++++|++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~i 77 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTI---GAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAA 77 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccce---eeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEE
Confidence 389999999999999999999987643 222222 2223333444566677899999999999988888999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHH-HHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFI-RKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|||+++. .+++....|+..+... ..+.|+++|+||+|+..... ...+ .+.+.+...
T Consensus 78 ilv~d~~~~-~s~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~--------------- 137 (193)
T cd04118 78 IVCYDLTDS-SSFERAKFWVKELQNL----EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD--------------- 137 (193)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHhc----CCCCCEEEEEEcccccccccccCccCHHHHHHHHH---------------
Confidence 999999987 6788888888777653 25789999999999864321 1000 011111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 138 -----------------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 138 -----------------EIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred -----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=171.02 Aligned_cols=158 Identities=14% Similarity=0.193 Sum_probs=114.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--CcccceeeeeccccceeEeecccC-CCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.||+++|++|||||||++++... .+.....++..+ ++......+ .+..+.+.+|||||+..+..++..+++++|
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 77 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGC---DFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPS 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEE---EEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCC
Confidence 38999999999999999999864 444333333322 222222222 355688999999999998889999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH-HHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++++|+|+++. .++.....|+..+.... .+.|+++|+||+|+........ ..+.+. .
T Consensus 78 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~-------------- 135 (164)
T cd04101 78 VFILVYDVSNK-ASFENCSRWVNKVRTAS----KHMPGVLVGNKMDLADKAEVTDAQAQAFA---Q-------------- 135 (164)
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCCHHHHHHHH---H--------------
Confidence 99999999986 67888888887776542 5689999999999965432211 111111 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|. +++++++|.+.+
T Consensus 136 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 136 ------------------ANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ------------------HcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 123468999999999 999999998753
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=169.35 Aligned_cols=157 Identities=26% Similarity=0.407 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|.+|||||||++++++..+. ...++...+. .... .....+.+|||||+..+...+..+++.+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~-----~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 72 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV-----ETVE--YKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIF 72 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce-----EEEE--ECCEEEEEEECCCChhhHHHHHHHhccCCEEEE
Confidence 6899999999999999999988632 2222222111 1111 123689999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|++++ .++.....++..+..... ..+.|+++|+||+|+......+++.+.+....
T Consensus 73 v~D~~~~-~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-------------------- 129 (158)
T cd00878 73 VVDSSDR-ERIEEAKEELHKLLNEEE--LKGVPLLIFANKQDLPGALSVSELIEKLGLEK-------------------- 129 (158)
T ss_pred EEECCCH-HHHHHHHHHHHHHHhCcc--cCCCcEEEEeeccCCccccCHHHHHHhhChhh--------------------
Confidence 9999986 678888888888877543 36899999999999986654444333222110
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.....++++++||++|. +++++++|.++
T Consensus 130 -----------~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 158 (158)
T cd00878 130 -----------ILGRRWHIQPCSAVTGDGLDEGLDWLLQQ 158 (158)
T ss_pred -----------ccCCcEEEEEeeCCCCCCHHHHHHHHhhC
Confidence 01346789999999999 99999999753
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-25 Score=177.90 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=94.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++..+.++..+.+++.. .+. ....+++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~---~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il 77 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFE---NYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL 77 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccc---ceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE
Confidence 58999999999999999999998876655555422 222 23344677789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
+|||+++. .+++.+. .|...+... ..+.|+++|+||+|+...
T Consensus 78 lvfdis~~-~Sf~~i~~~w~~~~~~~----~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 78 ICFDISRP-ETLDSVLKKWQGETQEF----CPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEEECcccccc
Confidence 99999997 7888885 455444332 267999999999999653
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=161.61 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=128.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
-.+|++++|+..+|||||+.++.+..|..+.+++. +.++....+.-+.+.+.+++|||+|++.++...-.|++++++
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv---GidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV---GIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeee---eeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 35699999999999999999999999987777766 455666666556777999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|||+++. +++..+..|..++.... ..+.|+|+|+||||+..++.... +.-....+
T Consensus 97 fiLmyDitNe-eSf~svqdw~tqIktys---w~naqvilvgnKCDmd~eRvis~--e~g~~l~~---------------- 154 (193)
T KOG0093|consen 97 FILMYDITNE-ESFNSVQDWITQIKTYS---WDNAQVILVGNKCDMDSERVISH--ERGRQLAD---------------- 154 (193)
T ss_pred EEEEEecCCH-HHHHHHHHHHHHheeee---ccCceEEEEecccCCccceeeeH--HHHHHHHH----------------
Confidence 9999999987 78999999999887763 37899999999999987764321 11111122
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
....+|||+|||.+- ++.+++.|..
T Consensus 155 ----------------~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 155 ----------------QLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred ----------------HhChHHhhhcccccccHHHHHHHHHH
Confidence 223478999999998 7777766543
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-25 Score=170.38 Aligned_cols=158 Identities=25% Similarity=0.404 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
+|+++|++|+|||||++++.++.+.. ..++.. +....... +..+.+.+|||||+..+...+..+++.+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~-----~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~ 73 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVG-----FNVEMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVY 73 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccC-----cceEEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999887532 122221 11121221 234689999999999998999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|+++. .++.....++.+++.... ..+.|+++|+||+|+.......++...+.. .
T Consensus 74 v~D~~~~-~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~--~------------------- 129 (160)
T cd04156 74 VVDSSDE-ARLDESQKELKHILKNEH--IKGVPVVLLANKQDLPGALTAEEITRRFKL--K------------------- 129 (160)
T ss_pred EEECCcH-HHHHHHHHHHHHHHhchh--hcCCCEEEEEECcccccCcCHHHHHHHcCC--c-------------------
Confidence 9999986 567888888888876432 257999999999999654333322211110 0
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
. +.. ..++.+++|||++|+ +++++++|.+
T Consensus 130 ------~--~~~-~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 130 ------K--YCS-DRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ------c--cCC-CCcEEEEecccccCCChHHHHHHHhc
Confidence 0 000 234679999999999 9999999865
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=168.42 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=116.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.....++. ............+..+.+.+|||||+..+...+..+++.+|+++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 77 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTT---QASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAI 77 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc---ceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEE
Confidence 489999999999999999999887643322222 12222222223455568999999999988889999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .+++....|+.++.... ..+.|+++|+||+|+........ +.+.+...
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~------------------ 133 (162)
T cd04123 78 LVYDITDA-DSFQKVKKWIKELKQMR---GNNISLVIVGNKIDLERQRVVSK--SEAEEYAK------------------ 133 (162)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCCCH--HHHHHHHH------------------
Confidence 99999987 67888888877776542 24789999999999875432211 11111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ ++++++||.+.+
T Consensus 134 --------------~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 134 --------------SVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred --------------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 123467999999999 999999998764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-25 Score=172.23 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=114.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEE
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 146 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v 146 (267)
|+++|++|+|||||++++.++.+...+.++. .........+++..+.+.+|||||++++...+..+++.+|++|+|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 76 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTV----FENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLIC 76 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcE----EeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEE
Confidence 5899999999999999999988754433332 122222233456667899999999999999898999999999999
Q ss_pred EeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 147 VDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 147 ~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
||+++. .+++.+. .|+..+... ..+.|+++|+||+|+.......+ .+.+ .....++..+.
T Consensus 77 ~d~~~~-~s~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~~~---~~~~------~~~~~v~~~~~----- 137 (174)
T smart00174 77 FSVDSP-ASFENVKEKWYPEVKHF----CPNTPIILVGTKLDLREDKSTLR---ELSK------QKQEPVTYEQG----- 137 (174)
T ss_pred EECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEecChhhhhChhhhh---hhhc------ccCCCccHHHH-----
Confidence 999987 6788775 477766553 25799999999999975321100 0000 00000000000
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+....+...+++|||++|+ ++++++.|.+.
T Consensus 138 -------~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 138 -------EALAKRIGAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred -------HHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 001111223478999999999 99999988765
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=175.94 Aligned_cols=160 Identities=17% Similarity=0.200 Sum_probs=120.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|+|||||+++|++..+.....+++ +.++......+++..+.+++|||+|++.+...+..+++.+|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti---~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~ 81 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc---cceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 35799999999999999999999887644333222 223333333445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|+|+++. .+++.+..|+..+.... ....|+++|+||+|+..... .++..+.. +
T Consensus 82 ~vlv~D~~~~-~s~~~l~~~~~~~~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~-------------- 139 (210)
T PLN03108 82 ALLVYDITRR-ETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRRAVSTEEGEQFA----K-------------- 139 (210)
T ss_pred EEEEEECCcH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECccCccccCCCHHHHHHHH----H--------------
Confidence 9999999987 67888888888776542 25789999999999975432 22222111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++|+.+++
T Consensus 140 ------------------~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 140 ------------------EHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999998887654
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-25 Score=169.04 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=119.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++++...+.....++. ..........++..+.+.+|||||+.++......+++.+|+++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 76 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTK----ADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFL 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcc----hhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEE
Confidence 489999999999999999999887654333222 2222223334666678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|.++. .++.....|+..+..... ..++|+++|+||+|+.... ......+ ..+
T Consensus 77 ~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~D~~~~~~~~~~~~~~----~~~---------------- 133 (164)
T cd04139 77 LVFSITDM-ESFTATAEFREQILRVKD--DDNVPLLLVGNKCDLEDKRQVSSEEAAN----LAR---------------- 133 (164)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEccccccccccCHHHHHH----HHH----------------
Confidence 99999886 678888888888877532 2679999999999997522 1111111 111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 134 ----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 134 ----------------QWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred ----------------HhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 112478999999999 999999998765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-25 Score=171.69 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=115.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
++.+||+++|.+|||||||++++.++.+. ..+.++. +..+......+++..+.+.+||++|.+.+...+..+++++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~---~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~ 78 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTI---KPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAAC 78 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCcc---CcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcC
Confidence 46689999999999999999999998875 4333333 2233333344456667899999999999988888999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|+|++++ .+++.+..|+..+.. ..++|+++|+||+|+....... ...+.+.+ .
T Consensus 79 d~~llv~d~~~~-~s~~~~~~~~~~~~~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~---~------------ 137 (169)
T cd01892 79 DVACLVYDSSDP-KSFSYCAEVYKKYFM-----LGEIPCLFVAAKADLDEQQQRYEVQPDEFCR---K------------ 137 (169)
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHhcc-----CCCCeEEEEEEcccccccccccccCHHHHHH---H------------
Confidence 999999999886 677777777765422 2478999999999996432210 00011111 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...++++||++|+ ++++++.|.+.+
T Consensus 138 -------------------~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 -------------------LGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred -------------------cCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 011135899999999 999999887753
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-25 Score=167.34 Aligned_cols=166 Identities=25% Similarity=0.412 Sum_probs=134.9
Q ss_pred hhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhc
Q 024474 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLP 138 (267)
Q Consensus 59 ~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 138 (267)
....+..+|+++|..|+||||++++|..+++.. +++++..+..++. .+++++++||..|+..+++.|..|++
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-tvPTiGfnVE~v~-------ykn~~f~vWDvGGq~k~R~lW~~Y~~ 83 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TVPTIGFNVETVE-------YKNISFTVWDVGGQEKLRPLWKHYFQ 83 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCccc-CCCccccceeEEE-------EcceEEEEEecCCCcccccchhhhcc
Confidence 346788899999999999999999998877532 2444433322222 23478999999999999999999999
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
+.+++|||+|+++. ..+.+..+.+..++....+ .+.|+++++||.|+..+.+..++.+.+.-. .+
T Consensus 84 ~t~~lIfVvDS~Dr-~Ri~eak~eL~~~l~~~~l--~~~~llv~aNKqD~~~als~~ei~~~L~l~--~l---------- 148 (181)
T KOG0070|consen 84 NTQGLIFVVDSSDR-ERIEEAKEELHRMLAEPEL--RNAPLLVFANKQDLPGALSAAEITNKLGLH--SL---------- 148 (181)
T ss_pred CCcEEEEEEeCCcH-HHHHHHHHHHHHHHcCccc--CCceEEEEechhhccccCCHHHHHhHhhhh--cc----------
Confidence 99999999999997 6799999999999987653 789999999999999998887777665520 00
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...++.+..|+|.+|+ +.+.++||.+.++
T Consensus 149 -------------------~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 149 -------------------RSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred -------------------CCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1357788999999999 9999999998764
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=167.48 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|.+|||||||++++.++.+...... . ...+... ..+.+..+.+++|||||...+...+..+++.+|++++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~-~---~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPR-V---LPEITIP-ADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICL 76 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCC-c---ccceEee-eeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEE
Confidence 899999999999999999999887543211 1 1111111 1234556789999999999888888888999999999
Q ss_pred EEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 146 VVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 146 v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
|||++++ .+++.+. .|+..+... ..+.|+++|+||+|+.+........+.+......+
T Consensus 77 v~d~~~~-~s~~~~~~~~~~~i~~~----~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------- 135 (166)
T cd01893 77 VYSVDRP-STLERIRTKWLPLIRRL----GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEF---------------- 135 (166)
T ss_pred EEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHH----------------
Confidence 9999987 6777765 455544432 14789999999999976554322222222111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.....++++||++|. ++++++.+.+.
T Consensus 136 --------------~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 136 --------------REIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred --------------hcccEEEEeccccccCHHHHHHHHHHH
Confidence 111268999999999 99999888765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=174.34 Aligned_cols=162 Identities=14% Similarity=0.185 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|+|||||+++++++.+...+.++. .........+.+..+.+++|||||+..+..++..++..+|++|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vil 76 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTV----EEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFAL 76 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch----hhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEE
Confidence 68999999999999999999987644322222 22222223334555789999999999998888899999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|||+++. .+++....|+..+..... ..++|+++|+||+|+........... ..+...
T Consensus 77 v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~~v~~~~-~~~~~~------------------- 133 (198)
T cd04147 77 VYAVDDP-ESFEEVERLREEILEVKE--DKFVPIVVVGNKADSLEEERQVPAKD-ALSTVE------------------- 133 (198)
T ss_pred EEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEEccccccccccccHHH-HHHHHH-------------------
Confidence 9999986 678888888877776432 25799999999999865321111111 111000
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+..++++||++|. ++++++||.+.+.
T Consensus 134 ------------~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 134 ------------LDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ------------hhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 0123468999999999 9999999998754
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-25 Score=187.43 Aligned_cols=205 Identities=21% Similarity=0.254 Sum_probs=149.0
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhcCCchHH------HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHH
Q 024474 9 LPEGMEQWKKELEEWLNRGIEFINQIPPTQL------YIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFY 82 (267)
Q Consensus 9 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~ 82 (267)
+-+.+.+-+.++++++++.+||.++.-+... .+..+...+..++....+...-+++.+++++|.||+|||||+|
T Consensus 156 ~i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLN 235 (454)
T COG0486 156 LINELREALLELLAQVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLN 235 (454)
T ss_pred HHHHHHHHHHHHHHHheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHH
Confidence 3334444445579999999999777222111 1444455555566566666677899999999999999999999
Q ss_pred HHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHH--------hhhccCCEEEEEEeCCCCCC
Q 024474 83 QLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD--------EFLPQAAGIVFVVDALEFLP 154 (267)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~~ 154 (267)
.|++.+ .+.++.++.|++++......++| +++.++||+|.++..+..+ ..+.+||.++||+|++.+.+
T Consensus 236 aL~~~d--~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~ 311 (454)
T COG0486 236 ALLGRD--RAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLD 311 (454)
T ss_pred HHhcCC--ceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCc
Confidence 999986 56788899999888888777777 7899999999998766654 36788999999999998511
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcc
Q 024474 155 NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFS 234 (267)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (267)
.....+.+. ...+.|+++|.||+||.........
T Consensus 312 ---~~d~~~~~~------~~~~~~~i~v~NK~DL~~~~~~~~~------------------------------------- 345 (454)
T COG0486 312 ---KEDLALIEL------LPKKKPIIVVLNKADLVSKIELESE------------------------------------- 345 (454)
T ss_pred ---hhhHHHHHh------cccCCCEEEEEechhcccccccchh-------------------------------------
Confidence 222222221 2377899999999999865432110
Q ss_pred cccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 235 FSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 235 ~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+..++.+||++|+ ++.|.+.|.+.+
T Consensus 346 --~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 346 --KLANGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred --hccCCCceEEEEecCccCHHHHHHHHHHHH
Confidence 01223368999999999 999999998764
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=168.02 Aligned_cols=162 Identities=19% Similarity=0.275 Sum_probs=116.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++++++|++|+|||||++++.++.+.....++. +.++......+.+..+.+.+|||||+..+...+..+++.+|+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 82 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI---GVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA 82 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---eeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 45799999999999999999999776543322222 112223333345656789999999999999988999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .+++....|+..+.... ..+.|+++|+||+|+....... ..+.+.+.+
T Consensus 83 ~i~v~d~~~~-~s~~~~~~~~~~l~~~~---~~~~~~i~v~NK~D~~~~~~i~---~~~~~~~~~--------------- 140 (169)
T cd04114 83 LILTYDITCE-ESFRCLPEWLREIEQYA---NNKVITILVGNKIDLAERREVS---QQRAEEFSD--------------- 140 (169)
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccC---HHHHHHHHH---------------
Confidence 9999999886 66777777877665432 2578999999999986543321 111111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|+ +++++++|.+.+
T Consensus 141 ----------------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 141 ----------------AQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred ----------------HcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 112468999999999 999999998754
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=167.13 Aligned_cols=157 Identities=23% Similarity=0.314 Sum_probs=122.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|+|||||++++.++.++....++. +.+........++..+.+.+||++|++.+......+++++|++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii 77 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTI---GIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIII 77 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTS---SEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccc---ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988765544433 233333444456777899999999999999889999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|||.++. ++++.+..|+..+..... .+.|+++|+||.|+.... ..++..+...
T Consensus 78 ~fd~~~~-~S~~~~~~~~~~i~~~~~---~~~~iivvg~K~D~~~~~~v~~~~~~~~~~--------------------- 132 (162)
T PF00071_consen 78 VFDVTDE-ESFENLKKWLEEIQKYKP---EDIPIIVVGNKSDLSDEREVSVEEAQEFAK--------------------- 132 (162)
T ss_dssp EEETTBH-HHHHTHHHHHHHHHHHST---TTSEEEEEEETTTGGGGSSSCHHHHHHHHH---------------------
T ss_pred ccccccc-cccccccccccccccccc---ccccceeeeccccccccccchhhHHHHHHH---------------------
Confidence 9999987 789999999998887632 468999999999998633 2332222221
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..|+++||++|. +.+++..+.+.+
T Consensus 133 ---------------~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 133 ---------------ELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp ---------------HTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ---------------HhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123789999999999 999887776653
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=154.93 Aligned_cols=165 Identities=24% Similarity=0.408 Sum_probs=134.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+..+|+++|..++||||++.+|..+.. ...+++++ +.+..+. .+++.+++||.+|++..++.|++|+.++
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG-----FnvetVt--ykN~kfNvwdvGGqd~iRplWrhYy~gt 85 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG-----FNVETVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGT 85 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCC-cccccccc-----eeEEEEE--eeeeEEeeeeccCchhhhHHHHhhccCC
Confidence 46789999999999999999999998762 22333332 3333333 3447899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
.++|||+|+.+. +.+++....++.++..... ...|++|.+||.|+..+..+.++.+.++-.- +
T Consensus 86 qglIFV~Dsa~~-dr~eeAr~ELh~ii~~~em--~~~~~LvlANkQDlp~A~~pqei~d~leLe~--~------------ 148 (180)
T KOG0071|consen 86 QGLIFVVDSADR-DRIEEARNELHRIINDREM--RDAIILILANKQDLPDAMKPQEIQDKLELER--I------------ 148 (180)
T ss_pred ceEEEEEeccch-hhHHHHHHHHHHHhCCHhh--hcceEEEEecCcccccccCHHHHHHHhcccc--c------------
Confidence 999999999987 7899999999999987654 6889999999999999999988877665211 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
-..++-+.++||.+|+ +.+-+.||.+.+++
T Consensus 149 -----------------r~~~W~vqp~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 149 -----------------RDRNWYVQPSCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred -----------------cCCccEeeccccccchhHHHHHHHHHhhccC
Confidence 0457788999999999 99999999998764
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-25 Score=169.64 Aligned_cols=174 Identities=48% Similarity=0.691 Sum_probs=117.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHh---hhcc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDE---FLPQ 139 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---~~~~ 139 (267)
+...|+++|+.|+|||+|+.+|..+.. ..+.+++.++.. ... -......+.++|+|||.+.+..... +...
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~-~~T~tS~e~n~~---~~~--~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~ 75 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKT-VPTVTSMENNIA---YNV--NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSN 75 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS----B---SSEEEE---CCG--SSTCGTCECEEEETT-HCCCHHHHHHHHHHGG
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCc-CCeeccccCCce---EEe--ecCCCCEEEEEECCCcHHHHHHHHHhhhchhh
Confidence 345899999999999999999999864 334444533221 111 1233457999999999999886555 4888
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc-cc-
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV-SE- 217 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~- 217 (267)
+.+||||+|++.....+....++|++++..........|++|++||+|+..+.+...+++.++++++.++..+++. ..
T Consensus 76 ~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~lr~tr~~~l~~~ 155 (181)
T PF09439_consen 76 AKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDKLRKTRSKSLESV 155 (181)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred CCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999864356888999999998876555688999999999999999999999999999999999998873 22
Q ss_pred -ccccccccCCCCCCCccccccccee
Q 024474 218 -ADVTNDFTLGIPGQAFSFSQCHNKV 242 (267)
Q Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (267)
.+......++..+.+|.|++++++|
T Consensus 156 d~~~~~~~~lg~~g~~F~F~~L~~~V 181 (181)
T PF09439_consen 156 DEDDDENEFLGKEGEDFTFEQLENNV 181 (181)
T ss_dssp --------TTS-TTS---GGGSSS-E
T ss_pred ccccccccccCCCCCCcchhhccCCC
Confidence 2223446788889999999988764
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=172.79 Aligned_cols=164 Identities=20% Similarity=0.237 Sum_probs=116.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|+|||||+++|+++.+.. ..++. +.++......+++..+.+.+|||||++++..++..+++.+|
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTI---GVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCc---eeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 346799999999999999999999876532 11111 22333333344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|||+++. .++..+..++...+.... ...+.|+++|+||+|+....... .+.......
T Consensus 88 ~~vlv~D~~~~-~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~--~~~~~~~~~--------------- 148 (211)
T PLN03118 88 GIILVYDVTRR-ETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVS--REEGMALAK--------------- 148 (211)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccC--HHHHHHHHH---------------
Confidence 99999999987 677777664433333211 12568999999999997543321 011111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ +++++++|.+.+
T Consensus 149 -----------------~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 149 -----------------EHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-24 Score=163.81 Aligned_cols=156 Identities=24% Similarity=0.349 Sum_probs=115.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|+|||||++++.+..+.....++... ++.......++....+.+||+||+..+......+++++|+++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii 77 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGV---DFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAI 77 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceee---eeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEE
Confidence 48999999999999999999998765543333322 222222233445578999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+++. .+++....|+..+.... ..+.|+++|+||+|+.... ..++.. +...
T Consensus 78 ~v~d~~~~-~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~---------------- 133 (159)
T cd00154 78 LVYDITNR-ESFENLDKWLKELKEYA---PENIPIILVGNKIDLEDQRQVSTEEAQ----QFAK---------------- 133 (159)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEEcccccccccccHHHHH----HHHH----------------
Confidence 99999986 67888888888777643 1578999999999996222 222222 1111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
..++.++++||++|+ ++++++||.+
T Consensus 134 ----------------~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 134 ----------------ENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ----------------HcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 124579999999999 9999999863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=168.12 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=90.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+|++++|++|+|||||++++.++.+..... ++..+.......+++..+.+++|||||+.++...+..+++++|++|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i 76 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYV----PTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFL 76 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEE
Confidence 489999999999999999999877644333 2222222223344566678999999999999988888999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
+|||+++. .+++... .|+..+... ..+.|+++|+||+|+...
T Consensus 77 ~v~d~~~~-~sf~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 77 LCFSVVNP-SSFQNISEKWIPEIRKH----NPKAPIILVGTQADLRTD 119 (173)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhhccC
Confidence 99999987 6787775 566666542 256899999999998643
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=167.02 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=114.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.....++.. ........+++..+.+.+|||||+..+...+..+++.+|+++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 76 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF----DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 76 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee----eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEE
Confidence 4899999999999999999999887544433321 111122334566678999999999999888888999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|+|.++. .+++... .|+..+... ..+.|+++|+||+|+.+............. ..++..+..
T Consensus 77 lv~~~~~~-~s~~~~~~~~~~~l~~~----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---------~~v~~~~~~-- 140 (174)
T cd04135 77 ICFSVVNP-ASFQNVKEEWVPELKEY----APNVPYLLVGTQIDLRDDPKTLARLNDMKE---------KPVTVEQGQ-- 140 (174)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEeEchhhhcChhhHHHHhhccC---------CCCCHHHHH--
Confidence 99999987 6777775 455444432 368999999999998654322111100000 000000000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+....+...|++|||++|+ ++++++.+.+.+
T Consensus 141 ----------~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 141 ----------KLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ----------HHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 01111223468999999999 999999887654
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=167.44 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=114.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|||||||++++.++.+...+.++... .+ .....+++..+.+.+|||||++++...+..+++++|+++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~---~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE---NY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 77 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc---ce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEE
Confidence 58999999999999999999998875544333321 11 122334566678999999999998888878899999999
Q ss_pred EEEeCCCCCCchHHHHH-HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|+|+++. .+++.... |+..+... ..+.|+++|+||+|+........ .+.. . ....+...+.
T Consensus 78 ~v~~~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~---~i~~----~--~~~~v~~~~~--- 140 (175)
T cd01870 78 MCFSIDSP-DSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRR---ELAK----M--KQEPVKPEEG--- 140 (175)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhcccChhhhh---hhhh----c--cCCCccHHHH---
Confidence 99999986 56776654 55555432 25789999999999864322111 0100 0 0000000000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+....+...+++|||++|. +++++++|.+.+
T Consensus 141 ---------~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 141 ---------RDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ---------HHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 001111223479999999999 999999998754
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=166.76 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=111.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-chhhHHhhhccCCEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-LRPKLDEFLPQAAGIV 144 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-~~~~~~~~~~~~d~ii 144 (267)
||+++|++|+|||||+++++.+.+.....++ ..........+++..+.+++|||||+.. +......+++.+|++|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 76 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPN----LESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFV 76 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCC----hHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEE
Confidence 5899999999999999999987653332222 2111122233456667899999999985 3456778899999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .+++.+..|+..+..... ...+.|+++|+||+|+........ +...+...
T Consensus 77 ~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~------------------ 134 (165)
T cd04146 77 LVYSITDR-SSFDEISQLKQLIREIKK-RDREIPVILVGNKADLLHYRQVST--EEGEKLAS------------------ 134 (165)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHHhCccCH--HHHHHHHH------------------
Confidence 99999987 778888887766655321 125799999999999864332111 11111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccC-c-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTG-E-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g-~-i~~l~~~l~~~~ 265 (267)
..+..|+++||++| + +++++++|.+.+
T Consensus 135 --------------~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 135 --------------ELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred --------------HcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 11247999999999 5 999999998764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-24 Score=168.93 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=85.3
Q ss_pred CCEEEEEcCCCCCHHHHHH-HHHcCCcccc-eeeeeccccc---eeEee-------cccCCCccccEEEEeCCCCCCchh
Q 024474 64 STTIVLAGLSGSGKTVLFY-QLRDGSTHQG-TVTSMEPNED---TFVLH-------SESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~-~l~~~~~~~~-~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
.+||+++|.+|||||||+. ++.++.+... ....+.|+.. .+... ...+++..+.+++|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4699999999999999996 5655443211 1122333321 12111 113467778999999999875 3
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
....+++++|++|+|||+++. .+++.+. .|+..+.... .+.|+++|+||+||..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~-~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASP-NSLRNVKTMWYPEIRHFC----PRVPVILVGCKLDLRY 134 (195)
T ss_pred hhcccCCCCCEEEEEEECCCh-hHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhccc
Confidence 455688999999999999987 7888886 4777765532 4789999999999964
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=173.51 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=112.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc-cceeeeeccccc-eeEeecccCCCccccEEEEeCCCCCCchhhHHhhhc-cCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNED-TFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLP-QAA 141 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~-~~d 141 (267)
+||+++|++|+|||||++++..+.+. .. +.++.. ++......+++....+.+|||||++ ......+++ .+|
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~----~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad 74 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHA----YDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGD 74 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccC----cCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCC
Confidence 48999999999999999999887653 22 222221 2333334445666789999999988 233345566 899
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|||+++. .+++....|+..+..... ..+.|+++|+||+|+........ +...+...
T Consensus 75 ~iilV~d~td~-~S~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~~~v~~--~~~~~~a~--------------- 134 (221)
T cd04148 75 AFVVVYSVTDR-SSFERASELRIQLRRNRQ--LEDRPIILVGNKSDLARSREVSV--QEGRACAV--------------- 134 (221)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhccccceecH--HHHHHHHH---------------
Confidence 99999999997 678888888877766422 25799999999999965432211 00111000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..|+++||++|. ++++++||.+.+
T Consensus 135 -----------------~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 135 -----------------VFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred -----------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998765
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=166.54 Aligned_cols=163 Identities=20% Similarity=0.380 Sum_probs=116.4
Q ss_pred HhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhh
Q 024474 58 VFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFL 137 (267)
Q Consensus 58 ~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 137 (267)
.....+.++|+++|++|+|||||++++.+..+.. ..++.+ +.......+ +..+.+|||||+..+...+..++
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-----~~~t~g-~~~~~i~~~--~~~~~~~D~~G~~~~~~~~~~~~ 79 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASEDISH-----ITPTQG-FNIKTVQSD--GFKLNVWDIGGQRAIRPYWRNYF 79 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-----cCCCCC-cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHh
Confidence 3345668899999999999999999999875421 122211 111122222 35789999999998888888999
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
+.+|++++|+|+++. .++.....++..++.... ..++|+++++||+|+......+++.+.+.
T Consensus 80 ~~~~~ii~v~D~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~i~~~l~--------------- 141 (173)
T cd04155 80 ENTDCLIYVIDSADK-KRLEEAGAELVELLEEEK--LAGVPVLVFANKQDLATAAPAEEIAEALN--------------- 141 (173)
T ss_pred cCCCEEEEEEeCCCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECCCCccCCCHHHHHHHcC---------------
Confidence 999999999999985 567777777777765432 25799999999999976544433222111
Q ss_pred ccccccccCCCCCCCccccc-ccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 218 ADVTNDFTLGIPGQAFSFSQ-CHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
..+ ....+.++++||++|+ ++++++||.+
T Consensus 142 -----------------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 142 -----------------LHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred -----------------CcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 000 0234568899999999 9999999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=165.47 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=111.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++|+++.+.....++.. ..........+..+.+++|||||+.++......+++.+|+++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i 76 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF----DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFL 76 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee----eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEE
Confidence 4899999999999999999999876433333221 112222233466678999999999988777778889999999
Q ss_pred EEEeCCCCCCchHHHHH-HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH---------HHHHHHHHHHHHhhhhc
Q 024474 145 FVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI---------RKQMEKEIDKLRASRSA 214 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~---------~~~l~~~~~~~~~~~~~ 214 (267)
+|||+++. .++..... |+..+... ..+.|+++|+||+|+......... .+...+
T Consensus 77 ~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~----------- 140 (171)
T cd00157 77 ICFSVDSP-SSFENVKTKWIPEIRHY----CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEK----------- 140 (171)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHH-----------
Confidence 99999986 55665544 55444442 257999999999998765433211 000000
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
+....+...|+++||++|+ +++++++|.+
T Consensus 141 --------------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 141 --------------------LAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred --------------------HHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 1111233479999999999 9999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=161.64 Aligned_cols=156 Identities=27% Similarity=0.330 Sum_probs=113.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEE
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 146 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v 146 (267)
|+++|++|||||||+++|.+..+.....++...... ... ...+.+.+|||||+..++..+..+++.+|++++|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-----~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 74 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-----KVT--KGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYV 74 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-----EEE--ECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 789999999999999999998775544443322111 111 1226799999999999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q 024474 147 VDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTL 226 (267)
Q Consensus 147 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (267)
+|+++. .++.....++..+..... ..++|+++|+||+|+.......++.+.+.. .
T Consensus 75 ~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~--~-------------------- 129 (159)
T cd04159 75 VDAADR-TALEAAKNELHDLLEKPS--LEGIPLLVLGNKNDLPGALSVDELIEQMNL--K-------------------- 129 (159)
T ss_pred EECCCH-HHHHHHHHHHHHHHcChh--hcCCCEEEEEeCccccCCcCHHHHHHHhCc--c--------------------
Confidence 999986 556677777777765432 257899999999998765443222111100 0
Q ss_pred CCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 227 GIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
......+.++++||++|. ++++++||.+
T Consensus 130 ---------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 130 ---------SITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ---------cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 000234678999999999 9999999975
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=163.69 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=105.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC--c-----ccceeeeecc---ccceeEe-----ecccCCCccccEEEEeCCCCCCc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS--T-----HQGTVTSMEP---NEDTFVL-----HSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~--~-----~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
++|+++|++|+|||||+++|++.. + ......+... .+.++.. .....++..+.+++|||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999998732 1 1111111100 0111111 11111445678999999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 209 (267)
...+..+++.+|++|+|+|++++ .+......|. .... .++|+++|+||+|+.... .....+.+.+.+.
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~-~~~~~~~~~~-~~~~------~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~--- 148 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQG-VEAQTLANFY-LALE------NNLEIIPVINKIDLPSAD-PERVKQQIEDVLG--- 148 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCC-ccHhhHHHHH-HHHH------cCCCEEEEEECCCCCcCC-HHHHHHHHHHHhC---
Confidence 99999999999999999999875 3333333332 2222 568999999999986432 2222222211100
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|+ +++|+++|.+.+++
T Consensus 149 -----------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 149 -----------------------------LDPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred -----------------------------CCcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 011248999999999 99999999998764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-24 Score=162.74 Aligned_cols=159 Identities=16% Similarity=0.258 Sum_probs=116.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|||||||++++++..+.....+ +...........++..+.+++||+||+..+......+++.+|++++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 76 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDP----TIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFIL 76 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCC----ChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence 689999999999999999998765433322 2222222233334556789999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|+++. .++.....++..+..... ..+.|+++|+||+|+....... .+.......
T Consensus 77 v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~------------------- 132 (160)
T cd00876 77 VYSITDR-ESFEEIKGYREQILRVKD--DEDIPIVLVGNKCDLENERQVS--KEEGKALAK------------------- 132 (160)
T ss_pred EEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECCcccccceec--HHHHHHHHH-------------------
Confidence 9999986 678888888877776432 1579999999999987632211 111111111
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+++++||++|+ +++++++|.+++
T Consensus 133 -------------~~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 133 -------------EWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred -------------HcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 112468999999999 999999998764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=165.28 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=116.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|+|||||++++.+..+.....++... ........++..+.+++|||||+.++...+..++..+|+++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 77 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIEN----TFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI 77 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhh----hEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE
Confidence 58999999999999999999987764333332211 11122233445578899999999999988999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|.++. .+++....++..+++... ..+.|+++|+||+|+........ +......+
T Consensus 78 ~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~--~~~~~~~~------------------ 134 (180)
T cd04137 78 LVYSVTSR-KSFEVVKVIYDKILDMLG--KESVPIVLVGNKSDLHTQRQVST--EEGKELAE------------------ 134 (180)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEchhhhhcCccCH--HHHHHHHH------------------
Confidence 99999987 678888888888776432 25789999999999864321110 11111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ ++++++||.+.+
T Consensus 135 --------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 135 --------------SWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred --------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998754
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=184.21 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=109.6
Q ss_pred cchhhhHHH---HHHHHHHHHHhhhcCCchHHH---HHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHH
Q 024474 11 EGMEQWKKE---LEEWLNRGIEFINQIPPTQLY---IACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQL 84 (267)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l 84 (267)
.....|++. +.+.+++.+||.++..+.... +..+...+..++... +....+++++|+++|++|+|||||+|+|
T Consensus 145 ~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L 223 (442)
T TIGR00450 145 QKIEAIRKSLLQLLAQVEVNIDYEEDDDEQDSLNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNAL 223 (442)
T ss_pred HHHHHHHHHHHHHHHHeeEECCcCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHH
Confidence 344445544 577778888888764332221 333344444444444 3344567899999999999999999999
Q ss_pred HcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhH--------HhhhccCCEEEEEEeCCCCCCch
Q 024474 85 RDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL--------DEFLPQAAGIVFVVDALEFLPNC 156 (267)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~~~~ 156 (267)
++... ..++.+++++.++......+++ ..+++|||||+.++.... ..+++.+|++++|+|++++ .+.
T Consensus 224 ~~~~~--aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~-~s~ 298 (442)
T TIGR00450 224 LKQDR--AIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQP-LTK 298 (442)
T ss_pred hCCCC--cccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCC-CCh
Confidence 98642 1233344444444333333344 578999999997655432 3578899999999999886 344
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 157 SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
+.. |+..+.. .++|+++|+||+|+...
T Consensus 299 ~~~--~l~~~~~------~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 299 DDF--LIIDLNK------SKKPFILVLNKIDLKIN 325 (442)
T ss_pred hHH--HHHHHhh------CCCCEEEEEECccCCCc
Confidence 433 5554432 57899999999999643
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-24 Score=154.75 Aligned_cols=164 Identities=25% Similarity=0.313 Sum_probs=131.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
..+..+.++|..++|||||+|.+..+.+.+..+++.+.+. ..+....+.+.+||.||+..|+.+|+.|++.++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm-------rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~ 90 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM-------RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVS 90 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhccccccee-------EEeccCceEEEEEecCCCccHHHHHHHHhhcCc
Confidence 3566899999999999999999988776555444443221 122334478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++||+|++++ +.++.....+..++....+ .++|++|.+||.|+.++.....+.+.+.- ++
T Consensus 91 aivY~VDaad~-~k~~~sr~EL~~LL~k~~l--~gip~LVLGnK~d~~~AL~~~~li~rmgL---------~s------- 151 (186)
T KOG0075|consen 91 AIVYVVDAADP-DKLEASRSELHDLLDKPSL--TGIPLLVLGNKIDLPGALSKIALIERMGL---------SS------- 151 (186)
T ss_pred EEEEEeecCCc-ccchhhHHHHHHHhcchhh--cCCcEEEecccccCcccccHHHHHHHhCc---------cc-------
Confidence 99999999996 7899999999999987754 89999999999999988777655544331 00
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
--...+-++.+|++... |+...+||.+|-+
T Consensus 152 ---------------itdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 152 ---------------ITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred ---------------cccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 01456788999999999 9999999999854
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=159.82 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=100.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch---------hhHHh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR---------PKLDE 135 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~---------~~~~~ 135 (267)
++|+++|++|+|||||+|+|.+..+... ..+.++........ ......+++|||||+.+.. .....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~---~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA---PYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC---CCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHH
Confidence 4899999999999999999999765321 11111222222222 2234689999999984311 01111
Q ss_pred hhccCCEEEEEEeCCCCCC-chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 136 FLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
....+|++|+|+|+++... +......|+..+... ..+.|+++|+||+|+.......+ .++. .
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~----~~~~-~-------- 138 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL----FKNKPVIVVLNKIDLLTFEDLSE----IEEE-E-------- 138 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh----cCcCCeEEEEEccccCchhhHHH----HHHh-h--------
Confidence 1223689999999987522 345555666665432 14789999999999975432221 1110 0
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ...+.++++||++|+ ++++++||.+.+
T Consensus 139 ----------------------~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 139 ----------------------E-LEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ----------------------h-hccCceEEEEecccCCHHHHHHHHHHHh
Confidence 0 224578999999999 999999998875
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=184.83 Aligned_cols=201 Identities=22% Similarity=0.257 Sum_probs=131.5
Q ss_pred CCcchhhhHHH---HHHHHHHHHHhhhcCCch--H----HHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHH
Q 024474 9 LPEGMEQWKKE---LEEWLNRGIEFINQIPPT--Q----LYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTV 79 (267)
Q Consensus 9 l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSs 79 (267)
|+.....|++. +.+.+++.+||.++..+. . ..+..+...+..+.....+..+.+.+++|+++|.+|+||||
T Consensus 151 l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSS 230 (449)
T PRK05291 151 LSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSS 230 (449)
T ss_pred HHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHH
Confidence 45566667665 456666778886654211 1 11444455555555444444455678999999999999999
Q ss_pred HHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhH--------HhhhccCCEEEEEEeCCC
Q 024474 80 LFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL--------DEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 80 Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--------~~~~~~~d~ii~v~d~~~ 151 (267)
|+|+|++... ..++...+++.++......+++ ..+.+|||||+.++.... ..+++.+|++++|+|+++
T Consensus 231 Lln~L~~~~~--a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~ 306 (449)
T PRK05291 231 LLNALLGEER--AIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE 306 (449)
T ss_pred HHHHHhCCCC--cccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC
Confidence 9999998653 1223333334433333333333 578999999987654432 246789999999999988
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCC
Q 024474 152 FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQ 231 (267)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (267)
+ .+.+.... +.. ..+.|+++|+||+|+....... .
T Consensus 307 ~-~s~~~~~~-l~~--------~~~~piiiV~NK~DL~~~~~~~----------~------------------------- 341 (449)
T PRK05291 307 P-LTEEDDEI-LEE--------LKDKPVIVVLNKADLTGEIDLE----------E------------------------- 341 (449)
T ss_pred C-CChhHHHH-HHh--------cCCCCcEEEEEhhhccccchhh----------h-------------------------
Confidence 6 34443222 222 1578999999999996432211 0
Q ss_pred CcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 232 AFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 232 ~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|+ +++|+++|.+.+
T Consensus 342 -------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 342 -------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred -------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 112358999999999 999999998865
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=150.90 Aligned_cols=152 Identities=20% Similarity=0.273 Sum_probs=120.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
-.+|.+++|+.|+|||+|+++++..+|......++. ..+......+.+..+++++|||+|+++|+...+.|++++.+
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtig---vefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG---VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccc---eecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 346899999999999999999999888655555553 33444444557888999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
.++|+|++.. +...++..|+.+..... .++..+++++||.||...+++ ++.++
T Consensus 87 almvyditrr-stynhlsswl~dar~lt---npnt~i~lignkadle~qrdv~yeeak~--------------------- 141 (215)
T KOG0097|consen 87 ALMVYDITRR-STYNHLSSWLTDARNLT---NPNTVIFLIGNKADLESQRDVTYEEAKE--------------------- 141 (215)
T ss_pred eeEEEEehhh-hhhhhHHHHHhhhhccC---CCceEEEEecchhhhhhcccCcHHHHHH---------------------
Confidence 9999999987 77899999998876543 377889999999999876543 22221
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhH
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQV 257 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l 257 (267)
|.+ .+...|+++||++|+ +++.
T Consensus 142 --------------fae-engl~fle~saktg~nveda 164 (215)
T KOG0097|consen 142 --------------FAE-ENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred --------------HHh-hcCeEEEEecccccCcHHHH
Confidence 111 456789999999999 7654
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-23 Score=157.95 Aligned_cols=158 Identities=21% Similarity=0.183 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc---ccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGST---HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
.|+++|++|+|||||+++|++... ......+. +............ ...+++|||||++++......+++.+|+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~---t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ 77 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGI---TIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDL 77 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCc---eEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence 689999999999999999986431 11100000 1111111112221 3589999999999887777788899999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. ........+.. +.. ....|+++|+||+|+..........+.+.+.+...
T Consensus 78 ii~V~d~~~~--~~~~~~~~~~~-~~~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------------- 136 (164)
T cd04171 78 VLLVVAADEG--IMPQTREHLEI-LEL----LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT-------------- 136 (164)
T ss_pred EEEEEECCCC--ccHhHHHHHHH-HHH----hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--------------
Confidence 9999999873 12222222222 221 12248999999999975321122222222222110
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
. ....+++++||++|+ +++++++|.+
T Consensus 137 --------------~-~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 137 --------------F-LADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred --------------C-cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 0 123578999999999 9999998865
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-23 Score=162.11 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=111.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.|++++|++|+|||||++++..+.+.....+ +...........++....+.+|||+|+..+......+++.+|+++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~l 77 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHP----TVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVIL 77 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC----cccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEE
Confidence 4899999999999999999987765432222 222222222233555577899999999888776667889999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH---HHHH-HHHHHHHHhhhhcccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI---RKQM-EKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~---~~~l-~~~~~~~~~~~~~~~~~~ 219 (267)
+|+|.++. ++++.+. .|+..+.... .++|+++|+||+|+.......+. .... ......
T Consensus 78 lv~~i~~~-~s~~~~~~~~~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~------------ 140 (187)
T cd04129 78 IGFAVDTP-DSLENVRTKWIEEVRRYC----PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKR------------ 140 (187)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHH------------
Confidence 99999886 6788776 4666665432 56999999999998543211000 0000 000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+....+...|++|||++|+ ++++++++.+.+
T Consensus 141 ---------------~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 141 ---------------VAKEIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred ---------------HHHHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 0000122368999999999 999999998653
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=164.85 Aligned_cols=172 Identities=20% Similarity=0.206 Sum_probs=132.3
Q ss_pred chhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCccc
Q 024474 12 GMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ 91 (267)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~ 91 (267)
...+..+-.|++++|..+++.+..++..++..++..++.++.+ +...+.|+|+|.||||||||++.+++.+.
T Consensus 122 ~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~I------dp~~pTivVaG~PNVGKSSlv~~lT~Akp-- 193 (346)
T COG1084 122 DPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAI------DPDLPTIVVAGYPNVGKSSLVRKLTTAKP-- 193 (346)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC------CCCCCeEEEecCCCCcHHHHHHHHhcCCC--
Confidence 3455556668999999999999999999999999999999976 77899999999999999999999999764
Q ss_pred ceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-----HH----hhhc-cCCEEEEEEeCCCCC-CchHHHH
Q 024474 92 GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-----LD----EFLP-QAAGIVFVVDALEFL-PNCSAAS 160 (267)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-----~~----~~~~-~~d~ii~v~d~~~~~-~~~~~~~ 160 (267)
.+.+++.|+....+... +....+++++||||.-+ +++ .+ ..++ -.++|+|++|++..+ -+.+.+.
T Consensus 194 -EvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLD-RPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~ 269 (346)
T COG1084 194 -EVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLD-RPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQI 269 (346)
T ss_pred -ccCCCCccccceeEeee--ecCCceEEEecCCcccC-CChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHH
Confidence 56667776665554433 44446899999999765 222 11 1222 368999999998742 3678888
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHH
Q 024474 161 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ 200 (267)
Q Consensus 161 ~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 200 (267)
..+.++... .+.|+++|+||+|..+....+++...
T Consensus 270 ~L~~eIk~~-----f~~p~v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 270 SLLEEIKEL-----FKAPIVVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred HHHHHHHHh-----cCCCeEEEEecccccchhHHHHHHHH
Confidence 888888764 55899999999999866555444433
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=164.33 Aligned_cols=161 Identities=13% Similarity=0.144 Sum_probs=119.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....+|++++|++|||||||+++++.+.+...+.++... .+.......++..+.+++|||+|+.++...+..+++.+
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGV---EVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce---EEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 346689999999999999999988877765444444432 22222222355668999999999999988888999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++++|+|+++. .++..+..|+..+.... .+.|+++|+||+|+.......+..+ ...
T Consensus 83 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~~i~lv~nK~Dl~~~~~~~~~~~----~~~-------------- 139 (215)
T PTZ00132 83 QCAIIMFDVTSR-ITYKNVPNWHRDIVRVC----ENIPIVLVGNKVDVKDRQVKARQIT----FHR-------------- 139 (215)
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECccCccccCCHHHHH----HHH--------------
Confidence 999999999987 67888888888876542 5689999999999864322111110 000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|. +++.+.||.+.+
T Consensus 140 ------------------~~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 140 ------------------KKNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999999887654
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-24 Score=155.22 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=127.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.-.+|++++|..-+|||||+-+++.++|.....++.... +......+.+....+.||||+|+++|..+-+-|+++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQAS---F~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQAS---FQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHH---HhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 345799999999999999999999999988777766433 44444555667778999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|||+++. ++|+..+.|..++..-. ...+.+++|+||+||...+.+... ..+...+
T Consensus 88 GalLVyDITDr-dSFqKVKnWV~Elr~ml---Gnei~l~IVGNKiDLEeeR~Vt~q--eAe~YAe--------------- 146 (218)
T KOG0088|consen 88 GALLVYDITDR-DSFQKVKNWVLELRTML---GNEIELLIVGNKIDLEEERQVTRQ--EAEAYAE--------------- 146 (218)
T ss_pred ceEEEEeccch-HHHHHHHHHHHHHHHHh---CCeeEEEEecCcccHHHhhhhhHH--HHHHHHH---------------
Confidence 99999999998 89999999999987742 367889999999999765543211 1111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
-....|.++||+.+. |.+|++.|...
T Consensus 147 -----------------svGA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 147 -----------------SVGALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred -----------------hhchhheecccccccCHHHHHHHHHHH
Confidence 113368999999999 99999888654
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=156.40 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=105.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC-CccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+.|+++|++|+|||||+++|....+......+. +........... +....+.+|||||+..+...+..++..+|++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~i 77 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGI---TQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIA 77 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCe---EEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEE
Confidence 369999999999999999999877543211111 111111111111 1346899999999999888888899999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. . .......+..+ . ..++|+++|+||+|+.... .+...+.+. .+....
T Consensus 78 l~v~d~~~~-~-~~~~~~~~~~~-~-----~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~----~~~~~~----------- 133 (168)
T cd01887 78 ILVVAADDG-V-MPQTIEAIKLA-K-----AANVPFIVALNKIDKPNAN-PERVKNELS----ELGLQG----------- 133 (168)
T ss_pred EEEEECCCC-c-cHHHHHHHHHH-H-----HcCCCEEEEEEceeccccc-HHHHHHHHH----Hhhccc-----------
Confidence 999999875 2 22222222222 2 1578999999999986432 222222221 110000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.......+.++++||++|+ ++++++||.++.+
T Consensus 134 -----------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 134 -----------EDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred -----------cccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 0001234579999999999 9999999988653
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-23 Score=151.10 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=122.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-CCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
.++++++|++-+|||||+..++.+++..-..+++ +.++....... .|..+++++|||+|+++|++....|++++-+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptv---gvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTV---GVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCcc---chHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 4689999999999999999999998865433333 33333222222 6777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|||.++. .++++...|+.+...+.. .+.++-+.+|++|+||...+.+. .++.++...
T Consensus 85 vllvyditnr-~sfehv~~w~~ea~m~~q-~P~k~VFlLVGhKsDL~SqRqVt--~EEaEklAa---------------- 144 (213)
T KOG0091|consen 85 VLLVYDITNR-ESFEHVENWVKEAAMATQ-GPDKVVFLLVGHKSDLQSQRQVT--AEEAEKLAA---------------- 144 (213)
T ss_pred eEEEEeccch-hhHHHHHHHHHHHHHhcC-CCCeeEEEEeccccchhhhcccc--HHHHHHHHH----------------
Confidence 9999999998 799999999999876543 13455678999999998655432 111111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
..+..|+|+||++|. +++-+.-|.+
T Consensus 145 ----------------~hgM~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 145 ----------------SHGMAFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred ----------------hcCceEEEecccCCCcHHHHHHHHHH
Confidence 445689999999999 8887766654
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=168.09 Aligned_cols=155 Identities=21% Similarity=0.299 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh--------hHHhhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP--------KLDEFL 137 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--------~~~~~~ 137 (267)
+|+++|.||||||||+|+|++.++. .++..+.++.. ........+ ...+.+|||||+.+... ....++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~--~vs~~~~TTr~-~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS--ITSPKAQTTRN-RISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe--ecCCCCCcccC-cEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHH
Confidence 6999999999999999999997642 12222222222 222111122 24799999999864321 133567
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
..+|++++|+|+++. .+.. .++...+.. .+.|+++|+||+|+... ....+.+......
T Consensus 78 ~~aDvvl~VvD~~~~-~~~~---~~i~~~l~~-----~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~---------- 135 (270)
T TIGR00436 78 GGVDLILFVVDSDQW-NGDG---EFVLTKLQN-----LKRPVVLTRNKLDNKFK---DKLLPLIDKYAIL---------- 135 (270)
T ss_pred hhCCEEEEEEECCCC-CchH---HHHHHHHHh-----cCCCEEEEEECeeCCCH---HHHHHHHHHHHhh----------
Confidence 899999999999885 3332 333333332 57899999999999632 2222111111000
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|+ +++|+++|.+.++|
T Consensus 136 ---------------------~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 136 ---------------------EDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred ---------------------cCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 111158999999999 99999999998864
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=158.92 Aligned_cols=176 Identities=21% Similarity=0.236 Sum_probs=112.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeec-----------cccceeEeecccCCCccccEEEEeCCCCCCchhhHH
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSME-----------PNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD 134 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 134 (267)
+|+++|.+|+|||||+|+|++............ ..+.+..............+.+|||||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999988765332211110 000111111111122235799999999998888899
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.+++.+|++++|+|+.++. . .....++..... .+.|+++|+||+|+..........+.+.+.++........
T Consensus 81 ~~~~~~d~~i~v~d~~~~~-~-~~~~~~~~~~~~------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 81 RGLSVSDGAILVVDANEGV-Q-PQTREHLRIARE------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHhcCEEEEEEECCCCC-c-HHHHHHHHHHHH------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh
Confidence 9999999999999998752 1 222233333222 5789999999999986444444444444433322100000
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
...+ + ......++++||++|. +++++++|.+.++|
T Consensus 153 ---------------~~~~-~--~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 153 ---------------EEGT-R--NGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred ---------------hhhc-c--cCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 0000 0 0235679999999999 99999999999876
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=170.47 Aligned_cols=155 Identities=21% Similarity=0.216 Sum_probs=98.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC-C-chhhHH------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS-R-LRPKLD------ 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~-~-~~~~~~------ 134 (267)
..++|+++|.+|+|||||+|+|++..+ .+.....++.+.......+.+ +..+.+|||||+. + .....+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~---~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV---YAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce---eeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH
Confidence 558999999999999999999998753 112222222222222222222 2479999999982 2 111112
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
..+..+|++++|+|++++ .+......+. .++.... ..++|+++|+||+|+..... + .. ..
T Consensus 264 e~~~~ADlil~VvD~s~~-~~~~~~~~~~-~~L~~l~--~~~~piIlV~NK~Dl~~~~~---v----~~-~~-------- 323 (351)
T TIGR03156 264 EEVREADLLLHVVDASDP-DREEQIEAVE-KVLEELG--AEDIPQLLVYNKIDLLDEPR---I----ER-LE-------- 323 (351)
T ss_pred HHHHhCCEEEEEEECCCC-chHHHHHHHH-HHHHHhc--cCCCCEEEEEEeecCCChHh---H----HH-HH--------
Confidence 247789999999999986 4444443332 3333211 14789999999999964211 1 00 00
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|+ +++|+++|.+++
T Consensus 324 ------------------------~~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 324 ------------------------EGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred ------------------------hCCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 001247899999999 999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=159.60 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC----ccccee-----eeeccccceeEeecc-------cCCCccccEEEEeCCCCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS----THQGTV-----TSMEPNEDTFVLHSE-------STKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~----~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~l~DtpG~~~ 128 (267)
.+|+++|++|+|||||+++|++.. +..... .+.......+.+... ...+..+.+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 479999999999999999998731 111110 111111111111100 0123357899999999876
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
+..........+|++++|+|++++. .......+ . +... .+.|+++|+||+|+......+...+.+.+.+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~-~~~~~~~~-~-~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGI-QTQTAECL-V-IGEI-----LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCc-cHHHHHHH-H-HHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 5444445566789999999998752 22221111 1 1221 4579999999999975433333333343333221
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.... -..+++++++||++|+ +++|+++|.+.++|
T Consensus 153 ~~~~-------------------------~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 153 LEKT-------------------------RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHhc-------------------------CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 0000 0124579999999999 99999999998775
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=154.32 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=100.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----chhhHH---hhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----LRPKLD---EFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----~~~~~~---~~~~ 138 (267)
+|+++|.+|||||||+|+|.+.... +...+.++..........++ ...+.+|||||+.+ .+.... ..+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~---v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK---IADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc---ccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHH
Confidence 6899999999999999999976531 11111111111111111122 13799999999742 112222 3345
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
.+|++++|+|+++..++++....|...+..... ...++|+++|+||+|+.+.....+. +......
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~---~~~~~~~----------- 142 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNP-ELLEKPRIVVLNKIDLLDEEELFEL---LKELLKE----------- 142 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCc-cccccccEEEEEchhcCCchhhHHH---HHHHHhh-----------
Confidence 699999999999752356666677666654321 1247899999999999765433221 1111110
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|. ++++++||.+.+
T Consensus 143 --------------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 143 --------------------LWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred --------------------CCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 013468999999999 999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=158.38 Aligned_cols=119 Identities=23% Similarity=0.304 Sum_probs=82.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc--CCccccee-----eee---c-cccceeEeecccCCCccccEEEEeCCCCCCchhhH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD--GSTHQGTV-----TSM---E-PNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL 133 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~--~~~~~~~~-----~~~---~-~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 133 (267)
++|+++|.+|+|||||+++|+. +.+..... .+. . ..+.++......+..+...+++|||||+.+|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999987 44332211 000 0 01111222222233445789999999999999999
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..+++.+|++++|+|+++. .......++..... .++|+++|+||+|+...
T Consensus 83 ~~~~~~~d~~ilV~d~~~~--~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG--PMPQTRFVLKKALE------LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHhcCEEEEEEECCCC--ccHHHHHHHHHHHH------cCCCEEEEEECCCCCCC
Confidence 9999999999999999874 22333333433322 57899999999999753
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=163.17 Aligned_cols=159 Identities=25% Similarity=0.340 Sum_probs=114.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHH--------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD-------- 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-------- 134 (267)
+.-.|+++|.||+|||||+|+|++.+. .++|..++++...+......+ ...+.++||||....+....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki---sIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI---SIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce---EeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 344699999999999999999999876 566666766665555444433 46899999999775544333
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHhhhh
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~ 213 (267)
..+..+|+++||+|+++. +..-.+++.+.+.. .+.|+++++||+|....... ....+.+..
T Consensus 81 ~sl~dvDlilfvvd~~~~---~~~~d~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~---------- 142 (298)
T COG1159 81 SALKDVDLILFVVDADEG---WGPGDEFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---------- 142 (298)
T ss_pred HHhccCcEEEEEEecccc---CCccHHHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHh----------
Confidence 356789999999999985 33345555555542 46899999999998866542 111111111
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
......++++||++|. ++.|.+.|.+++++
T Consensus 143 ------------------------~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 143 ------------------------LLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ------------------------hCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 0222378999999999 99999999999864
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=170.13 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc-hhh-------H
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL-RPK-------L 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~-~~~-------~ 133 (267)
.+..+|+++|.+|||||||+|+|++..+. .++....++..........++ ..+.+|||||+.+. ..+ .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~--ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS--IVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee--eccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence 35569999999999999999999987652 111111112222222222233 57899999998542 221 1
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..++..+|++++|+|+.+. +.....++.+.+.. .+.|+++|+||+|+... ...+ +.+.+...
T Consensus 126 ~~~l~~aDvil~VvD~~~s---~~~~~~~il~~l~~-----~~~p~IlViNKiDl~~~-~~~~----~~~~l~~~----- 187 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKS---FDDITHNILDKLRS-----LNIVPIFLLNKIDIESK-YLND----IKAFLTEN----- 187 (339)
T ss_pred HHHhhhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEEhhcCccc-cHHH----HHHHHHhc-----
Confidence 1347799999999998764 44444444443332 45678899999998642 2211 11111110
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|+ ++++++||.+++++
T Consensus 188 -------------------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 188 -------------------------HPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred -------------------------CCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 112468999999999 99999999998874
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=153.66 Aligned_cols=147 Identities=27% Similarity=0.316 Sum_probs=99.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh------HHhhh-
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK------LDEFL- 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------~~~~~- 137 (267)
++|+++|.||+|||||+|+|++.+. .+...+.++.+.........+ ..+.++|+||.-+..+. ...++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~---~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ---KVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE---EEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---eecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHh
Confidence 4899999999999999999999874 556666666655544444334 58999999996544322 33444
Q ss_pred -ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 138 -PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 138 -~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
...|++++|+|++. ++.....+.++++ .++|+++|+||+|+..........+.+.+
T Consensus 76 ~~~~D~ii~VvDa~~----l~r~l~l~~ql~e------~g~P~vvvlN~~D~a~~~g~~id~~~Ls~------------- 132 (156)
T PF02421_consen 76 SEKPDLIIVVVDATN----LERNLYLTLQLLE------LGIPVVVVLNKMDEAERKGIEIDAEKLSE------------- 132 (156)
T ss_dssp HTSSSEEEEEEEGGG----HHHHHHHHHHHHH------TTSSEEEEEETHHHHHHTTEEE-HHHHHH-------------
T ss_pred hcCCCEEEEECCCCC----HHHHHHHHHHHHH------cCCCEEEEEeCHHHHHHcCCEECHHHHHH-------------
Confidence 57999999999987 3444445555554 78999999999998654432222233332
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHH
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 261 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l 261 (267)
..+++++++||++|+ +++|++.|
T Consensus 133 ----------------------~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 133 ----------------------RLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ----------------------HHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred ----------------------HhCCCEEEEEeCCCcCHHHHHhhC
Confidence 234579999999999 99998865
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-22 Score=157.14 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=97.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeeccc-----CCCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-----TKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
.||+++|.+|+|||||++++.++.+.....+++.. ++...... .++..+.+++|||+|+++++.++..++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~---~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ 77 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGC---SVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQ 77 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceee---eEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCc
Confidence 48999999999999999999998876554444432 22222111 23456789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCC----------------CCCCCCcEEEEEecCCCCCC
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNST----------------VVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~pvivv~nK~Dl~~~ 191 (267)
+|++|+|||+++. .+++.+..|+.++..... ....++|+++|+||+|+...
T Consensus 78 ad~iIlVyDvtn~-~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 78 VNGIILVHDLTNR-KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred CCEEEEEEECcCh-HHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 9999999999998 889999999999876321 11247899999999999754
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=154.12 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=99.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh--hH----
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP--KL---- 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~---- 133 (267)
+..++|+++|++|||||||+|++++..+... ..++..+.. ......+. ..+.+|||||+.+... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~-----~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~ 112 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT-----RRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFR 112 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee-----EEEEecCC-ceEEEeCCCccccCCCHHHHHHHH
Confidence 4568999999999999999999998763211 112222211 11112222 3799999999843211 11
Q ss_pred --HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 134 --DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 134 --~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
...+..+|++++|+|++++ .+......+.. .+.... ..+.|+++|+||+|+....... ...
T Consensus 113 ~~~~~~~~~d~ii~v~D~~~~-~~~~~~~~~~~-~l~~~~--~~~~~viiV~NK~Dl~~~~~~~----------~~~--- 175 (204)
T cd01878 113 STLEEVAEADLLLHVVDASDP-DYEEQIETVEK-VLKELG--AEDIPMILVLNKIDLLDDEELE----------ERL--- 175 (204)
T ss_pred HHHHHHhcCCeEEEEEECCCC-ChhhHHHHHHH-HHHHcC--cCCCCEEEEEEccccCChHHHH----------HHh---
Confidence 1235689999999999886 34444433333 232211 2568999999999996543211 000
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ....+++++||++|. ++++++||.+++
T Consensus 176 ------------------------~--~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 176 ------------------------E--AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ------------------------h--cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 0 223468999999999 999999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-23 Score=151.48 Aligned_cols=161 Identities=21% Similarity=0.341 Sum_probs=120.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccc--cceeEeecccC----CCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN--EDTFVLHSEST----KGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
|++.+|++|+||||++.+++.+.|....++++... .....++..-. .+..+.+++|||+|+++|+++.-.+++.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRD 90 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRD 90 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHh
Confidence 67889999999999999999999987777765332 22222222222 2344789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
+-+++++||+++. .++-....|+-++..++.. .+.-+++++||+||.+.+.+.+.. ......
T Consensus 91 AMGFlLiFDlT~e-qSFLnvrnWlSQL~~hAYc--E~PDivlcGNK~DL~~~R~Vs~~q--a~~La~------------- 152 (219)
T KOG0081|consen 91 AMGFLLIFDLTSE-QSFLNVRNWLSQLQTHAYC--ENPDIVLCGNKADLEDQRVVSEDQ--AAALAD------------- 152 (219)
T ss_pred hccceEEEeccch-HHHHHHHHHHHHHHHhhcc--CCCCEEEEcCccchhhhhhhhHHH--HHHHHH-------------
Confidence 9999999999986 7899999999999887653 556689999999998665443211 111111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++|||+||-+|. +++-.+.|..
T Consensus 153 -------------------kyglPYfETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 153 -------------------KYGLPYFETSACTGTNVEKAVELLLD 178 (219)
T ss_pred -------------------HhCCCeeeeccccCcCHHHHHHHHHH
Confidence 335689999999998 6665555443
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-23 Score=152.34 Aligned_cols=179 Identities=19% Similarity=0.296 Sum_probs=132.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCc---ccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGST---HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 52 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
...++........+.++|+|+.++|||||+.++-.... .......+.++ ...+...+.-....+.+||..|++.
T Consensus 5 ~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~t---vgLnig~i~v~~~~l~fwdlgGQe~ 81 (197)
T KOG0076|consen 5 MSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPT---VGLNIGTIEVCNAPLSFWDLGGQES 81 (197)
T ss_pred HHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecc---cceeecceeeccceeEEEEcCChHH
Confidence 34456666677889999999999999999998754321 11111112221 1222222222235799999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
.+++|..||..+|++||+||+++. +.++.....+..+..+..+ .+.|+++.+||.|+.+.....++...+.. ....
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~-eR~~~~~t~~~~v~~~E~l--eg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~ 157 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDR-ERFEESKTAFEKVVENEKL--EGAPVLVLANKQDLQNAMEAAELDGVFGL-AELI 157 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCH-HHHHHHHHHHHHHHHHHHh--cCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhc
Confidence 999999999999999999999997 6788888888888876543 78999999999999888777776665553 1111
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
-.....|.++||.+|+ |++-.+|+.++++
T Consensus 158 -----------------------------~~rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 158 -----------------------------PRRDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred -----------------------------CCccCccccchhhhcccHHHHHHHHHHHHh
Confidence 0344578999999999 9999999988764
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=155.59 Aligned_cols=168 Identities=24% Similarity=0.254 Sum_probs=106.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccce--e-------eeec----cccceeEeecccC--CCccccEEEEeCCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--V-------TSME----PNEDTFVLHSEST--KGKIKPVHLVDVPGHS 127 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~-------~~~~----~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~ 127 (267)
+.++|+++|+.++|||||+++|+........ . .... ....+........ ......++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4568999999999999999999854311000 0 0000 0000010111111 2444689999999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
+|.......++.+|++|+|+|+.++ ......+.+..+.. .++|+++|+||+|+. .....+..++....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g--~~~~~~~~l~~~~~------~~~p~ivvlNK~D~~----~~~~~~~~~~~~~~ 149 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDG--IQPQTEEHLKILRE------LGIPIIVVLNKMDLI----EKELEEIIEEIKEK 149 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTB--STHHHHHHHHHHHH------TT-SEEEEEETCTSS----HHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeecccc--cccccccccccccc------cccceEEeeeeccch----hhhHHHHHHHHHHH
Confidence 9998888999999999999999986 12233333433333 788999999999998 22222222222212
Q ss_pred HHhhhhccccccccccccCCCCCCCccccccc--ceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCH--NKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+..... .. ..++++++||++|. +++|+++|.+++|
T Consensus 150 l~~~~~------------------------~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 150 LLKEYG------------------------ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHTT------------------------STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred hccccc------------------------cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 200000 01 25789999999999 9999999999987
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=165.05 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-------chhhHHhhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-------LRPKLDEFL 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-------~~~~~~~~~ 137 (267)
..|+++|.||||||||+|+|++... .+..++.++.........+. ....+.+|||||+.+ ....+.+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~---~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhi 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP---KIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHI 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC---ccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence 4799999999999999999998642 22222222222222222221 224699999999753 223344567
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
++++++++|+|+++. ++++....|..++..... ...++|+++|+||+|+....... .+..+....
T Consensus 235 e~a~vlI~ViD~s~~-~s~e~~~~~~~EL~~~~~-~L~~kp~IIV~NKiDL~~~~~~~--~~~~~~~~~----------- 299 (335)
T PRK12299 235 ERTRLLLHLVDIEAV-DPVEDYKTIRNELEKYSP-ELADKPRILVLNKIDLLDEEEER--EKRAALELA----------- 299 (335)
T ss_pred hhcCEEEEEEcCCCC-CCHHHHHHHHHHHHHhhh-hcccCCeEEEEECcccCCchhHH--HHHHHHHHH-----------
Confidence 789999999999976 467777777776655321 11468999999999997543221 111111111
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 300 ---------------------~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 300 ---------------------ALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred ---------------------hcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998865
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-21 Score=146.75 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=107.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|+|||||++++.+..+.....++. +.+........++..+.+.+|||||+.++...+..+.+.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGT---TRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCc---eeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEE
Confidence 699999999999999999999887433322211 22222222233444468999999999999988888889999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+++|....-.++.... .+...+.... ..+.|+++|+||+|+..... .+...+.+..
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~---------------- 135 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHA---ESNVPIILVGNKIDLRDAKL----KTHVAFLFAK---------------- 135 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhc---ccCCcEEEEEEcccCCcchh----hHHHHHHHhh----------------
Confidence 9999876422333333 5555554432 13789999999999975441 1222222221
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
.....++++||++|+ ++++++||.
T Consensus 136 ---------------~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 136 ---------------LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred ---------------ccCCceEEeecCCCCCHHHHHHHhh
Confidence 122358999999999 999999986
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-21 Score=163.60 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=103.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc-------hhhHHhhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL-------RPKLDEFL 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~-------~~~~~~~~ 137 (267)
..|+++|.||||||||+|+|++... .+..++.++.........+++ ...+++|||||+.+. ...+.+++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~---~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhi 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP---KIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHI 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc---cccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHH
Confidence 4799999999999999999998653 222222222222222222222 257999999998532 22334556
Q ss_pred ccCCEEEEEEeCCCCC--CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 138 PQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.++|++++|+|+++.. +.++....|..++..... ...+.|+++|+||+|+......++..+. +.+
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-~l~~kp~IIV~NK~DL~~~~~~~~~~~~----l~~-------- 300 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-ELAEKPRIVVLNKIDLLDEEELAELLKE----LKK-------- 300 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-hhccCCEEEEEeCccCCChHHHHHHHHH----HHH--------
Confidence 6899999999998641 345555566555543211 1257899999999999754222111111 110
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+..++++||++|+ +++++++|.+.++
T Consensus 301 -----------------------~~~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 301 -----------------------ALGKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred -----------------------HcCCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 112368999999999 9999999998763
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-21 Score=151.43 Aligned_cols=161 Identities=22% Similarity=0.289 Sum_probs=102.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----------ch
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----------LR 130 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----------~~ 130 (267)
....++|+++|++|+|||||+|+|++..+......+. +.+........ ...+.+|||||+.. +.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~---~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP---GRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC---CceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 4577899999999999999999999875322221111 11111111111 25799999999642 23
Q ss_pred hhHHhhhccC---CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 131 PKLDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 131 ~~~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
.....+++.+ +++++|+|.+.+ ......++...+.. .+.|+++++||+|+......+...+.+.+.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~ 166 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHP---LKELDLQMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF 166 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCC---CCHHHHHHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh
Confidence 3344555544 678899998764 22222223333332 578999999999997543333333333322221
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
....++++||++|+ +++++++|.+.++|
T Consensus 167 --------------------------------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 167 --------------------------------GDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred --------------------------------cCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 13468899999999 99999999999986
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=147.04 Aligned_cols=148 Identities=22% Similarity=0.226 Sum_probs=95.2
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh--------hHHhhhcc
Q 024474 68 VLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP--------KLDEFLPQ 139 (267)
Q Consensus 68 ~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--------~~~~~~~~ 139 (267)
+++|.+|+|||||+|+|.+.... ......+++........... +..+.+|||||+.++.. ....+++.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~--~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA--IVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE--eecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHh
Confidence 47999999999999999986421 11122222222222222222 35799999999988654 34456788
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
+|++++|+|+.+.... ...++.+.+.. .+.|+++|+||+|+...... .+. +..
T Consensus 77 ~d~ii~v~d~~~~~~~---~~~~~~~~~~~-----~~~piiiv~nK~D~~~~~~~---~~~----~~~------------ 129 (157)
T cd01894 77 ADVILFVVDGREGLTP---ADEEIAKYLRK-----SKKPVILVVNKVDNIKEEDE---AAE----FYS------------ 129 (157)
T ss_pred CCEEEEEEeccccCCc---cHHHHHHHHHh-----cCCCEEEEEECcccCChHHH---HHH----HHh------------
Confidence 9999999999864221 12233333332 46899999999999754221 110 110
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...++++||++|+ +++++++|.+++
T Consensus 130 -------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 130 -------------------LGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred -------------------cCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 011147899999999 999999998764
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=146.78 Aligned_cols=147 Identities=26% Similarity=0.313 Sum_probs=95.8
Q ss_pred EEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh------hHHhhhc--cC
Q 024474 69 LAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP------KLDEFLP--QA 140 (267)
Q Consensus 69 i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~------~~~~~~~--~~ 140 (267)
++|.+|+|||||+|++.+..+.... ...++.........+++ ..+.+|||||+.++.. ....++. .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGN---WPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccC---CCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCC
Confidence 5899999999999999987532211 11112222222222233 4789999999987654 2455664 89
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .. ...++..+.. .++|+++|+||+|+..........+.+.+
T Consensus 76 d~vi~v~d~~~~-~~---~~~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~----------------- 128 (158)
T cd01879 76 DLIVNVVDATNL-ER---NLYLTLQLLE------LGLPVVVALNMIDEAEKRGIKIDLDKLSE----------------- 128 (158)
T ss_pred cEEEEEeeCCcc-hh---HHHHHHHHHH------cCCCEEEEEehhhhcccccchhhHHHHHH-----------------
Confidence 999999999875 22 2233333332 56899999999999765432211111111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+..
T Consensus 129 ------------------~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 129 ------------------LLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ------------------hhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 113468999999999 999999998754
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=150.49 Aligned_cols=168 Identities=19% Similarity=0.177 Sum_probs=100.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccc--ceee---eeccccceeEee--------------------cccCC--C----
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVT---SMEPNEDTFVLH--------------------SESTK--G---- 113 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~--~~~~---~~~~~~~~~~~~--------------------~~~~~--~---- 113 (267)
.+|+++|+.|+|||||+..|.+..... .... ++......+... ..... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 379999999999999999997642111 1110 111100000000 00000 1
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
....+.+|||||+.++.......+..+|++++|+|++++.. .......+..+ .. ....|+++|+||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~-~~~t~~~l~~~-~~----~~~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCP-QPQTSEHLAAL-EI----MGLKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCC-CcchHHHHHHH-HH----cCCCcEEEEEEchhccCHHH
Confidence 11579999999999888877788888999999999987311 11112222222 11 12347999999999964322
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 194 KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....+.+++.+... ....+.++++||++|+ +++|+++|.+++++
T Consensus 155 ~~~~~~~i~~~~~~~-----------------------------~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 155 ALENYEQIKKFVKGT-----------------------------IAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHHhcc-----------------------------ccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 222222222222110 0124568999999999 99999999998763
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-21 Score=151.13 Aligned_cols=159 Identities=16% Similarity=0.243 Sum_probs=124.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+|++++|.+|+|||+|+.++..+.|...+ .|+..+.......+++..+.+.|+||+|+.++..+.+.+++.+|+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y----~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~g 77 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDY----DPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDG 77 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccccc----CCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcE
Confidence 4579999999999999999999999876554 444445555666667888899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH-HHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI-RKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++||++++. .+++.+..+..++++... ...+|+++|+||+|+...+.+..- -+.+. .
T Consensus 78 F~lVysitd~-~SF~~~~~l~~~I~r~~~--~~~~PivlVGNK~Dl~~~R~V~~eeg~~la---~--------------- 136 (196)
T KOG0395|consen 78 FLLVYSITDR-SSFEEAKQLREQILRVKG--RDDVPIILVGNKCDLERERQVSEEEGKALA---R--------------- 136 (196)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhhC--cCCCCEEEEEEcccchhccccCHHHHHHHH---H---------------
Confidence 9999999998 889999999988865432 356899999999999875432111 11110 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...+.|+|+||+... +++++.-|..
T Consensus 137 -----------------~~~~~f~E~Sak~~~~v~~~F~~L~r 162 (196)
T KOG0395|consen 137 -----------------SWGCAFIETSAKLNYNVDEVFYELVR 162 (196)
T ss_pred -----------------hcCCcEEEeeccCCcCHHHHHHHHHH
Confidence 223459999999998 8888776654
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-21 Score=159.27 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=97.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-------------CCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-------------KGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~DtpG~~~ 128 (267)
...+||+++|..|||||||++++.++.+.....+++.. ++......+ ++..+.++||||+|++.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~---d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGC---TVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceee---eEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 45679999999999999999999998775544444432 222221111 12457899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCC---------CCCCcEEEEEecCCCCCC
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV---------KKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~pvivv~nK~Dl~~~ 191 (267)
|+.++..|++++|++|+|||+++. .+++.+..|+.++....... ..++|+++|+||+||...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr-~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQR-RTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999997 78999999999887642100 135899999999999654
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-21 Score=143.72 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC-----CchhhHHhhhccC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS-----RLRPKLDEFLPQA 140 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~-----~~~~~~~~~~~~~ 140 (267)
||+++|++|+|||||+|+|.+..+. ..++ .... +.-.+|||||+. .++... ..++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t-~~~~----------~~~~~iDt~G~~~~~~~~~~~~~-~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKT-QAVE----------YNDGAIDTPGEYVENRRLYSALI-VTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------cccc-eeEE----------EcCeeecCchhhhhhHHHHHHHH-HHhhcC
Confidence 8999999999999999999987642 1111 1111 112689999973 222222 357899
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|++++ .++.. ..|. +. ...|+++|+||+|+...... .+..++..+.
T Consensus 64 d~vilv~d~~~~-~s~~~-~~~~-~~--------~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~------------- 116 (142)
T TIGR02528 64 DVIALVQSATDP-ESRFP-PGFA-SI--------FVKPVIGLVTKIDLAEADVD---IERAKELLET------------- 116 (142)
T ss_pred CEEEEEecCCCC-CcCCC-hhHH-Hh--------ccCCeEEEEEeeccCCcccC---HHHHHHHHHH-------------
Confidence 999999999987 33322 2222 21 12499999999999642211 1111111111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
.+..+++++||++|+ +++++++|.
T Consensus 117 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 117 ------------------AGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ------------------cCCCcEEEEecCCCCCHHHHHHHHh
Confidence 111258999999999 999999985
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=157.15 Aligned_cols=160 Identities=23% Similarity=0.316 Sum_probs=102.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh--------hHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP--------KLD 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--------~~~ 134 (267)
+...|+++|+||||||||+|+|++..+. ..+..++++........ ......+.+|||||..+... ...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~---~vs~~~~tt~~~i~~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKIS---IVSPKPQTTRHRIRGIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCcee---ecCCCCCcccccEEEEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 3457999999999999999999987642 22222222222221111 11226899999999865432 223
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
..+..+|++++|+|+++. +.....++.+.+.. .+.|+++|+||+|+... ...... .+..+..
T Consensus 80 ~~~~~~D~il~vvd~~~~---~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~--~~~l~~----~~~~l~~---- 141 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEK---IGPGDEFILEKLKK-----VKTPVILVLNKIDLVKD--KEELLP----LLEELSE---- 141 (292)
T ss_pred HHHhcCCEEEEEEeCCCC---CChhHHHHHHHHhh-----cCCCEEEEEECCcCCCC--HHHHHH----HHHHHHh----
Confidence 467789999999999873 22333444444432 46899999999999732 122222 2222110
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
......++++||++|+ +++|+++|.+++++
T Consensus 142 -----------------------~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 142 -----------------------LMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred -----------------------hCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 0123468999999999 99999999998764
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-22 Score=144.76 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=120.0
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcccce-eeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEE
Q 024474 68 VLAGLSGSGKTVLFYQLRDGSTHQGT-VTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 146 (267)
Q Consensus 68 ~i~G~~~~GKSsLl~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v 146 (267)
+++|.+++|||+|+-++..+.|-.+. ++++ +.++.-.....++..+++++|||+|+++|++....|++.+|+++++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistv---gid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allll 77 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTV---GIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLL 77 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeee---eeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeee
Confidence 36899999999999988777664332 3333 4455555666688889999999999999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 147 VDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 147 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
||+.+. .+++....|+.++.+.. +....+++++||+|+..++.+. +--+.+.+
T Consensus 78 ydiank-asfdn~~~wlsei~ey~---k~~v~l~llgnk~d~a~er~v~~ddg~kla~---------------------- 131 (192)
T KOG0083|consen 78 YDIANK-ASFDNCQAWLSEIHEYA---KEAVALMLLGNKCDLAHERAVKRDDGEKLAE---------------------- 131 (192)
T ss_pred eecccc-hhHHHHHHHHHHHHHHH---HhhHhHhhhccccccchhhccccchHHHHHH----------------------
Confidence 999997 78999999999988764 3677889999999997654321 11111111
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...++|.|+||+||- ++--+-.|.+.+
T Consensus 132 -------------~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 132 -------------AYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred -------------HHCCCceeccccccccHhHHHHHHHHHH
Confidence 345689999999998 776666666543
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=171.36 Aligned_cols=163 Identities=21% Similarity=0.292 Sum_probs=107.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC-------cccceeeee---ccccceeEeecc-----cCCCccccEEEEeCCCCCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGS-------THQGTVTSM---EPNEDTFVLHSE-----STKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~-------~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~l~DtpG~~~ 128 (267)
.++++++|++++|||||+++|+... +......+. ...+.++..... ..++..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111111100 000111211111 1145557899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
|...+..+++.+|++|+|+|++++ .+.+....|.. ... .+.|+++|+||+|+.... .+...+.+.+.+.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g-~~~qt~~~~~~-~~~------~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg-- 151 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQG-IEAQTLANVYL-ALE------NDLEIIPVINKIDLPSAD-PERVKKEIEEVIG-- 151 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCC-CCHhHHHHHHH-HHH------cCCCEEEEEECcCCCccC-HHHHHHHHHHHhC--
Confidence 999999999999999999999986 33444333332 222 567999999999986432 2222222222110
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|. +++|+++|.+.++|
T Consensus 152 ------------------------------~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 152 ------------------------------LDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ------------------------------CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 001147999999999 99999999988764
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-21 Score=137.95 Aligned_cols=166 Identities=23% Similarity=0.394 Sum_probs=128.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.++.++|+++|..++||||++..|.+.... . +.|+.+ |.......++ .+++++||.+|+...++.|..|+.+.
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~-h----ltpT~G-Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenv 86 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPR-H----LTPTNG-FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENV 86 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChh-h----ccccCC-cceEEEeecC-cEEEEEEecCCccccchhhhhhhhcc
Confidence 467889999999999999999999887532 1 222222 2222333233 26899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|||+|+++. ..++++...+.+++....+ ...|+++..||.|+..+...+++...++-..-+
T Consensus 87 d~lIyVIDS~D~-krfeE~~~el~ELleeeKl--~~vpvlIfankQdlltaa~~eeia~klnl~~lr------------- 150 (185)
T KOG0074|consen 87 DGLIYVIDSTDE-KRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTAAKVEEIALKLNLAGLR------------- 150 (185)
T ss_pred ceEEEEEeCCch-HhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhhcchHHHHHhcchhhhh-------------
Confidence 999999998886 6788888888888876543 789999999999999887777665544321111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
...+.+.+|||.+++ +..-.+|+.....|
T Consensus 151 ------------------dRswhIq~csals~eg~~dg~~wv~sn~~~ 180 (185)
T KOG0074|consen 151 ------------------DRSWHIQECSALSLEGSTDGSDWVQSNPET 180 (185)
T ss_pred ------------------hceEEeeeCccccccCccCcchhhhcCCCC
Confidence 346788999999999 88889999887764
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=162.35 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=96.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--chhhHH------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--LRPKLD------ 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--~~~~~~------ 134 (267)
..++|+++|.+|||||||+|+|++..+. +.....++.+.......+.+. ..+.+|||||+.+ ....++
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~---v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl 271 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY---AADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATL 271 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee---eccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHH
Confidence 3479999999999999999999987542 111212222222222222221 2688999999843 222333
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
..++.+|++|+|+|++++ ........+ ..++.... ..++|+++|+||+|+...... .+.. .. .
T Consensus 272 ~~~~~ADlIL~VvDaS~~-~~~e~l~~v-~~iL~el~--~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~-----~- 334 (426)
T PRK11058 272 QETRQATLLLHVVDAADV-RVQENIEAV-NTVLEEID--AHEIPTLLVMNKIDMLDDFEP-----RIDR--DE-----E- 334 (426)
T ss_pred HHhhcCCEEEEEEeCCCc-cHHHHHHHH-HHHHHHhc--cCCCCEEEEEEcccCCCchhH-----HHHH--Hh-----c-
Confidence 346789999999999986 434443222 22222211 247899999999999643111 0000 00 0
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
... .++++||++|+ +++|+++|.+.+.
T Consensus 335 ------------------------~~~-~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 335 ------------------------NKP-IRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ------------------------CCC-ceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 000 24789999999 9999999998763
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=149.07 Aligned_cols=163 Identities=21% Similarity=0.360 Sum_probs=96.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC-----------CCch
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH-----------SRLR 130 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~-----------~~~~ 130 (267)
...++|+++|.+|+|||||+|+|.+..+..... + +.++..... ... .+++|||||. +.++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~----~-~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~ 77 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKR----P-GVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIK 77 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCC----C-ceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHH
Confidence 456799999999999999999999876432211 1 111111111 111 5899999994 3444
Q ss_pred hhHHhhhc----cCCEEEEEEeCCCCCCchH--------HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHH
Q 024474 131 PKLDEFLP----QAAGIVFVVDALEFLPNCS--------AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIR 198 (267)
Q Consensus 131 ~~~~~~~~----~~d~ii~v~d~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~ 198 (267)
..+..++. .++++++|+|++....... .....+...+.. .++|+++|+||+|+.... .+..
T Consensus 78 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~--~~~~ 150 (201)
T PRK04213 78 DEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNR--DEVL 150 (201)
T ss_pred HHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcH--HHHH
Confidence 45555543 4578999999865311100 111222333322 578999999999996543 1111
Q ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCcchhHHHHHHhhcC
Q 024474 199 KQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQVK 266 (267)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~~ 266 (267)
+.+.+ .+... . . +. .....++++||++|.++++++||.+.+.
T Consensus 151 ~~~~~---~~~~~-----~--------------~--~~--~~~~~~~~~SA~~ggi~~l~~~l~~~~~ 192 (201)
T PRK04213 151 DEIAE---RLGLY-----P--------------P--WR--QWQDIIAPISAKKGGIEELKEAIRKRLH 192 (201)
T ss_pred HHHHH---HhcCC-----c--------------c--cc--ccCCcEEEEecccCCHHHHHHHHHHhhc
Confidence 12211 11000 0 0 00 0012589999999999999999998765
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=167.39 Aligned_cols=183 Identities=19% Similarity=0.281 Sum_probs=107.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-------------CCccccEEEEeCCCCCCc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-------------KGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~DtpG~~~~ 129 (267)
+.+.|+++|++|+|||||+|+|.+..+.......+..+.+......... ......+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 4568999999999999999999987654322111111111111111100 111124899999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--------------HH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------KE 195 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~~ 195 (267)
..++..+++.+|++++|+|++++. . ......+ ..+. ..+.|+++++||+|+..... ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~-~-~qt~e~i-~~l~-----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGF-K-PQTQEAL-NILR-----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCC-C-HhHHHHH-HHHH-----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 999999999999999999998741 1 1111222 2222 15789999999999964211 11
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 196 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.+.+.+.+.+..+.. .+...+...+.. ....+...+++++++||++|+ +++|.+||..
T Consensus 155 ~v~~~~~~~~~~lv~---~l~~~G~~~e~~-------~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 155 QVQQNLDTKVYNLVI---KLHEEGFEAERF-------DRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHH---HHHhcCccHHhh-------hhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 111222221111110 011111100000 001233567899999999999 9999998864
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=147.46 Aligned_cols=151 Identities=24% Similarity=0.317 Sum_probs=92.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----------ch
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----------LR 130 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----------~~ 130 (267)
+.+.++|+++|++|+|||||+|+|++..+.... ....+++. .......++ .+.+|||||+.. +.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~-~~~~~~t~--~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLART-SKTPGRTQ--LINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccc-cCCCCcce--EEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 467889999999999999999999987532111 11111111 111111122 689999999642 22
Q ss_pred hhHHhhhcc---CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 131 PKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 131 ~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
.....+++. +|++++|+|++.+ +......+...+.. .+.|+++|+||+|+..........+.+++.+..
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~---~~~~~~~~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHP---LKELDLEMLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK 160 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCC---CCHHHHHHHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence 233445543 5799999999874 22222233334432 578999999999997543333333444433332
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-ch
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS 255 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~ 255 (267)
. ..++.++++||++|+ ++
T Consensus 161 ~------------------------------~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 161 D------------------------------ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred c------------------------------cCCCceEEEECCCCCCCC
Confidence 1 123468999999998 63
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-21 Score=137.27 Aligned_cols=163 Identities=25% Similarity=0.437 Sum_probs=126.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..+++++|..|+|||+++.++.-++. ++ ..|+.+ ++...+..++.++++||..|+...++.|+.|+.+.|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgev----vt-tkPtig---fnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~ 87 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEV----VT-TKPTIG---FNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTD 87 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcc----cc-cCCCCC---cCccccccccccceeeEccCcccccHHHHHHhcccc
Confidence 3778999999999999999998876653 12 222222 223333446689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|||+|.++. +.+......+..+++...+ .+..+++++||+|........+....+.- ..+.
T Consensus 88 avIyVVDssd~-dris~a~~el~~mL~E~eL--q~a~llv~anKqD~~~~~t~~E~~~~L~l--~~Lk------------ 150 (182)
T KOG0072|consen 88 AVIYVVDSSDR-DRISIAGVELYSMLQEEEL--QHAKLLVFANKQDYSGALTRSEVLKMLGL--QKLK------------ 150 (182)
T ss_pred eEEEEEeccch-hhhhhhHHHHHHHhccHhh--cCceEEEEeccccchhhhhHHHHHHHhCh--HHHh------------
Confidence 99999999997 6677888888888887765 45779999999998876666555544431 1110
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+.+++.||.+|+ +++..+||.+-++
T Consensus 151 -----------------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 151 -----------------DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred -----------------hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 345789999999999 9999999988664
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=142.00 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=98.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh--------HHh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------LDE 135 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~~~ 135 (267)
+.+|+++|++|+|||||++++.+.... ......+++........... ...+.+|||||+.++... ...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 76 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRA--IVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERARE 76 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceE--eccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHH
Confidence 358999999999999999999987531 11112222222222122222 357899999998765432 224
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
++..+|++++|+|+++. .+......+.. ..+.|+++|+||+|+...... .
T Consensus 77 ~~~~~~~~v~v~d~~~~-~~~~~~~~~~~---------~~~~~vi~v~nK~D~~~~~~~-----------~--------- 126 (157)
T cd04164 77 AIEEADLVLFVIDASRG-LDEEDLEILEL---------PADKPIIVVLNKSDLLPDSEL-----------L--------- 126 (157)
T ss_pred HHhhCCEEEEEEECCCC-CCHHHHHHHHh---------hcCCCEEEEEEchhcCCcccc-----------c---------
Confidence 67789999999999975 22333222111 267899999999999754322 0
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
......+++++||++|. +++|.++|.+.++
T Consensus 127 ---------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 157 (157)
T cd04164 127 ---------------------SLLAGKPIIAISAKTGEGLDELKEALLELAG 157 (157)
T ss_pred ---------------------cccCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 00224578999999999 9999999998764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=166.95 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=108.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|.+..+.......+..+...+.. ..++. ..+++|||||+.+|..++.+++..+|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v---~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aD 160 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHV---ENEDG-KMITFLDTPGHEAFTSMRARGAKVTD 160 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEE---EECCC-cEEEEEECCCCcchhhHHHhhhccCC
Confidence 466899999999999999999999877644322222222221211 11221 27899999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|++++ ......+.+.... ..++|+++++||+|+... ..+.+.+.+.+ ....
T Consensus 161 iaILVVda~dg--v~~qT~e~i~~~~------~~~vPiIVviNKiDl~~~-~~e~v~~~L~~----~g~~---------- 217 (587)
T TIGR00487 161 IVVLVVAADDG--VMPQTIEAISHAK------AANVPIIVAINKIDKPEA-NPDRVKQELSE----YGLV---------- 217 (587)
T ss_pred EEEEEEECCCC--CCHhHHHHHHHHH------HcCCCEEEEEECcccccC-CHHHHHHHHHH----hhhh----------
Confidence 99999999875 1233333333222 267899999999999643 33333332221 1000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.......+.++++||++|+ +++|+++|..
T Consensus 218 -------------~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 218 -------------PEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred -------------HHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 0011234579999999999 9999999854
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-20 Score=143.57 Aligned_cols=158 Identities=21% Similarity=0.210 Sum_probs=97.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-----------h
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-----------K 132 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-----------~ 132 (267)
.++|+++|.+|+|||||+|+|++..... ......++..........++ ..+.+|||||+.+... .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~ 77 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI--VSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLR 77 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee--ccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHH
Confidence 4689999999999999999999865311 11111111111111111122 4688999999764311 1
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~ 210 (267)
...++..+|++++|+|+.++ .+... ...+..... .+.|+++|+||+|+.... ..+.+.+.+.+.+..
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~-~~~~~-~~~~~~~~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 146 (174)
T cd01895 78 TLKAIERADVVLLVIDATEG-ITEQD-LRIAGLILE------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPF--- 146 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCC-cchhH-HHHHHHHHh------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccc---
Confidence 12356789999999999886 22222 222222222 568999999999997653 222222222221110
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
....+++++||++|+ ++++++++.++
T Consensus 147 ----------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 147 ----------------------------LDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ----------------------------ccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 123478999999999 99999999875
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=166.42 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=99.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKL 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~ 133 (267)
...++|+++|.+|||||||+|+|++.... .+......+.+........++ ..+.+|||||+.. +....
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~--~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~ 111 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREA--VVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQA 111 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcc--cccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHH
Confidence 45679999999999999999999987531 111122222222222222233 4689999999863 23345
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..+++.+|++|+|+|++++. +.. ...+.+.++. .++|+++|+||+|+...... . .+ ...
T Consensus 112 ~~~~~~aD~il~VvD~~~~~-s~~--~~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~--~----~~-~~~------ 170 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGA-TAT--DEAVARVLRR-----SGKPVILAANKVDDERGEAD--A----AA-LWS------ 170 (472)
T ss_pred HHHHHhCCEEEEEEECCCCC-CHH--HHHHHHHHHH-----cCCCEEEEEECccCCccchh--h----HH-HHh------
Confidence 56788999999999999862 221 2233333332 67899999999998642110 0 00 000
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.... ..+++||++|. +++|+++|.+.++
T Consensus 171 ------------------------~g~~-~~~~iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 171 ------------------------LGLG-EPHPVSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred ------------------------cCCC-CeEEEEcCCCCCcHHHHHHHHhhcc
Confidence 0001 24689999999 9999999988764
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-21 Score=150.12 Aligned_cols=173 Identities=17% Similarity=0.229 Sum_probs=123.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-CCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...|++++|+.++|||+|+..+..+.|+..+++++-.+ + .....+ +++.+.+.+|||+|+++|..++.-.+.++|
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdn---y-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~td 78 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDN---Y-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTD 78 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEcc---c-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCC
Confidence 35699999999999999999999999988888776422 2 223444 488899999999999999887777889999
Q ss_pred EEEEEEeCCCCCCchHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSA-ASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++++|++.++ .++++ ..+|+.++...+ ++.|+|+|++|.||..+. .. .+.+.+. ..+.++....
T Consensus 79 vfl~cfsv~~p-~S~~nv~~kW~pEi~~~c----p~vpiiLVGtk~DLr~d~--~~-~~~l~~~------~~~~Vt~~~g 144 (198)
T KOG0393|consen 79 VFLLCFSVVSP-ESFENVKSKWIPEIKHHC----PNVPIILVGTKADLRDDP--ST-LEKLQRQ------GLEPVTYEQG 144 (198)
T ss_pred EEEEEEEcCCh-hhHHHHHhhhhHHHHhhC----CCCCEEEEeehHHhhhCH--HH-HHHHHhc------cCCcccHHHH
Confidence 99999999998 67776 578888888764 789999999999998432 11 1111110 1111221111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHH-HHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVE-QFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~-~~l~~~~ 265 (267)
.. ....-+.+.|+||||++.+ +.+.+ +.+...+
T Consensus 145 ~~------------lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 145 LE------------LAKEIGAVKYLECSALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred HH------------HHHHhCcceeeeehhhhhCCcHHHHHHHHHHHh
Confidence 11 1122345789999999999 87775 4444333
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=166.16 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----------chhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----------LRPK 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----------~~~~ 132 (267)
..++|+++|.+|+|||||+|+|++.... .+....+++.+........++ ..+.+|||||+.+ +...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~--~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS--VVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc--cccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHH
Confidence 4689999999999999999999987632 122233333333222222334 4578999999642 1111
Q ss_pred -HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 133 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 133 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
...+++.+|++++|+|++++ .+.... .++..+.. .++|+++|+||+|+..........+.+.+.+.
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~-~s~~~~-~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~----- 352 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEP-ISEQDQ-RVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDRELA----- 352 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCC-CCHHHH-HHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhcc-----
Confidence 12467899999999999986 344443 33433332 67899999999999753222111111111100
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ....+++++||++|. ++++++.+.+.+
T Consensus 353 -------------------------~-~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 353 -------------------------Q-VPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred -------------------------c-CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 112367899999999 999998887643
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=165.30 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=99.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh----------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK---------- 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---------- 132 (267)
...+++++|.+|+|||||+|+|++.... .+....+++.+........++ ..+.+|||||+.+....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~--~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERV--IVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCee--ecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHH
Confidence 4579999999999999999999986521 111122222222111112233 47899999998654322
Q ss_pred -HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 133 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 133 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
...+++.+|++|+|+|++++ .+... ...+..+.. .++|+++|+||+|+.. .. +..+.+.+.+...
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~-~~~~~-~~~~~~~~~------~~~~iiiv~NK~Dl~~--~~-~~~~~~~~~~~~~--- 312 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEG-ITEQD-LRIAGLILE------AGKALVIVVNKWDLVK--DE-KTREEFKKELRRK--- 312 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCC-ccHHH-HHHHHHHHH------cCCcEEEEEECcccCC--CH-HHHHHHHHHHHHh---
Confidence 12467899999999999986 22222 223333322 5789999999999972 11 1122222222211
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+.. ...++++++||++|. ++++++++.+.
T Consensus 313 -----------------------~~~-~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 313 -----------------------LPF-LDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred -----------------------ccc-CCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 000 123578999999999 99999888664
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-20 Score=145.41 Aligned_cols=169 Identities=16% Similarity=0.174 Sum_probs=104.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccc------e-eeee----ccccceeEeecccCCCccccEEEEeCCCCCCchhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQG------T-VTSM----EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK 132 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~------~-~~~~----~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 132 (267)
..+|+++|++++|||||+++|+......+ . .... ...+.+.......+......+.++||||+.+|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 35899999999999999999976411000 0 0000 00111222222222334467999999999988887
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~ 210 (267)
....+..+|++++|+|+..+ .......+...+.. .++| +++|+||+|+..... .+.+.+++.+.+..+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g---~~~~~~~~~~~~~~-----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g- 152 (195)
T cd01884 82 MITGAAQMDGAILVVSATDG---PMPQTREHLLLARQ-----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG- 152 (195)
T ss_pred HHHHhhhCCEEEEEEECCCC---CcHHHHHHHHHHHH-----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc-
Confidence 88888999999999999875 22222223333332 5566 789999999863221 1223333444333321
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-c----------hhHHHHHHhhcCC
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-I----------SQVEQFIREQVKP 267 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i----------~~l~~~l~~~~~p 267 (267)
+. ..+++++++||++|. + ..|++.|...++|
T Consensus 153 ------------------------~~--~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 153 ------------------------FD--GDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred ------------------------cc--ccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCC
Confidence 00 235789999999998 5 3677888776543
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=144.93 Aligned_cols=157 Identities=22% Similarity=0.213 Sum_probs=98.7
Q ss_pred EEcCCCCCHHHHHHHHHcCCcc--cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----hh---hHHhhhcc
Q 024474 69 LAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----RP---KLDEFLPQ 139 (267)
Q Consensus 69 i~G~~~~GKSsLl~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----~~---~~~~~~~~ 139 (267)
++|++|||||||+|+|.+.... ....++..+... ...+. ....+.+|||||+.+. +. ....+++.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~-----~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLG-----VVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcce-----EEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhc
Confidence 5899999999999999987531 111122222211 11122 1357899999997431 11 22345778
Q ss_pred CCEEEEEEeCCCCC-----CchHHHHHHHHHHHhcCCC----CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 140 AAGIVFVVDALEFL-----PNCSAASEYLYDILTNSTV----VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 140 ~d~ii~v~d~~~~~-----~~~~~~~~~l~~~~~~~~~----~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
+|++++|+|+++.. ........+...+...... ...+.|+++|+||+|+.......... .. ..
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~--~~--- 146 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VR--EL--- 146 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HH--HH---
Confidence 99999999998862 3456666666666543110 01478999999999997543322211 00 00
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.......++++||++|. +++++++|.+.+
T Consensus 147 --------------------------~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 147 --------------------------ALEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred --------------------------hcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 00223468999999999 999999997653
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=140.61 Aligned_cols=157 Identities=24% Similarity=0.302 Sum_probs=98.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh--------HHh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------LDE 135 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~~~ 135 (267)
..+|+++|++|+|||||+|++.+..... ......++...... ........+.+|||||....... ...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRNRIRG--IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe--ccCCCCceeceEEE--EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 4589999999999999999999875321 11111111111111 11223357899999998754432 234
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.+..+|++++|+|+++. ......++.+.+.. .+.|+++|+||+|+... ...+.+.+.. +..
T Consensus 79 ~~~~~d~i~~v~d~~~~---~~~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~--~~~~~~~~~~-~~~-------- 139 (168)
T cd04163 79 ALKDVDLVLFVVDASEP---IGEGDEFILELLKK-----SKTPVILVLNKIDLVKD--KEDLLPLLEK-LKE-------- 139 (168)
T ss_pred HHHhCCEEEEEEECCCc---cCchHHHHHHHHHH-----hCCCEEEEEEchhcccc--HHHHHHHHHH-HHh--------
Confidence 57889999999999875 22223333333332 46899999999998732 1122221111 110
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....+++++|+++|+ +++++++|.+++
T Consensus 140 ----------------------~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 140 ----------------------LGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred ----------------------ccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 0113468999999999 999999998764
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=168.26 Aligned_cols=166 Identities=17% Similarity=0.254 Sum_probs=110.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|....+.......+......+.... ..++....++||||||+..|..++.++++.+|
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~-~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEF-EYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEE-EecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 56789999999999999999999987654322222222122222221 11234478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+|++++. .....+.+..+ . ..++|+++|+||+|+... ..+.+.+.+.. ... +
T Consensus 321 iaILVVDA~dGv--~~QT~E~I~~~-k-----~~~iPiIVViNKiDl~~~-~~e~v~~eL~~----~~l----l------ 377 (742)
T CHL00189 321 IAILIIAADDGV--KPQTIEAINYI-Q-----AANVPIIVAINKIDKANA-NTERIKQQLAK----YNL----I------ 377 (742)
T ss_pred EEEEEEECcCCC--ChhhHHHHHHH-H-----hcCceEEEEEECCCcccc-CHHHHHHHHHH----hcc----c------
Confidence 999999998751 12222222222 2 267899999999999753 22233322221 100 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.......++++++||++|+ +++|+++|...
T Consensus 378 -------------~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 378 -------------PEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred -------------hHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 0001234689999999999 99999998754
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=168.61 Aligned_cols=162 Identities=18% Similarity=0.248 Sum_probs=108.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+.|+++|+.++|||||+++|.+..+.......+....+.+.+ .++ +..++||||||+..|..++.++++.+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v---~~~--~~~ItfiDTPGhe~F~~m~~rga~~a 361 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQV---ETN--GGKITFLDTPGHEAFTAMRARGAQVT 361 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEE---EEC--CEEEEEEECCCCccchhHHHhhhhhC
Confidence 3577899999999999999999998876543322222111222222 112 25799999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|+|||++++ ........+.... ..++|+++|+||+|+... ..+.+...+.. .. ..
T Consensus 362 DiaILVVdAddG--v~~qT~e~i~~a~------~~~vPiIVviNKiDl~~a-~~e~V~~eL~~----~~-----~~---- 419 (787)
T PRK05306 362 DIVVLVVAADDG--VMPQTIEAINHAK------AAGVPIIVAINKIDKPGA-NPDRVKQELSE----YG-----LV---- 419 (787)
T ss_pred CEEEEEEECCCC--CCHhHHHHHHHHH------hcCCcEEEEEECcccccc-CHHHHHHHHHH----hc-----cc----
Confidence 999999999875 1222222232221 267899999999999653 23333332221 10 00
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
-.+....+.++++||++|+ +++|+++|..
T Consensus 420 --------------~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 420 --------------PEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred --------------HHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 0011334689999999999 9999999863
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-20 Score=161.84 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=100.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----h---hhHHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----R---PKLDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----~---~~~~~~ 136 (267)
...|+++|.||||||||+|+|++... .+..++.++...........+ ..+.+|||||+.+. . ....++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akp---kIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrh 233 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKP---KIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRH 233 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCc---cccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHH
Confidence 34899999999999999999998643 233333333322222222222 57999999997432 1 123346
Q ss_pred hccCCEEEEEEeCCCCC---CchHHHHHHHHHHHhcCC--------CCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 137 LPQAAGIVFVVDALEFL---PNCSAASEYLYDILTNST--------VVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~---~~~~~~~~~l~~~~~~~~--------~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
+..+|++|+|+|+++.. +.+.....+..++..... ....++|+++|+||+|+..... ..+.+...+
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~~~l 310 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE---LAEFVRPEL 310 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH---HHHHHHHHH
Confidence 77899999999997521 223333333333322110 0115689999999999964321 222222211
Q ss_pred HHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 206 DKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ...+.++++||++|+ +++|++||.+.+
T Consensus 311 ~--------------------------------~~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 311 E--------------------------------ARGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred H--------------------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 113468999999999 999999998765
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=147.40 Aligned_cols=124 Identities=22% Similarity=0.282 Sum_probs=94.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||+++|.++.+.....++.. ..+...........+.+.+|||+|+++++..+..|+.++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG---NLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee---eeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 7999999999999999999999887654443321 1122222222222567999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 194 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 194 (267)
+|+|........+....|...+.... ..+.|+++|+||+|+......
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~---~~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELA---PDDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhC---CCCceEEEEecccccccchhH
Confidence 99999985456666777777766642 146899999999999876543
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=137.08 Aligned_cols=155 Identities=25% Similarity=0.333 Sum_probs=104.2
Q ss_pred EEcCCCCCHHHHHHHHHcCCc-ccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEE
Q 024474 69 LAGLSGSGKTVLFYQLRDGST-HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVV 147 (267)
Q Consensus 69 i~G~~~~GKSsLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~ 147 (267)
++|++|+|||||++++.+... .....++. . ...............+.+||+||+..+......+++.+|++++|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 76 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-I---DFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVY 76 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-h---heeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999998764 12111111 1 111111112233568999999999988888888999999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q 024474 148 DALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLG 227 (267)
Q Consensus 148 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (267)
|+++. .+......+........ ...+.|+++|+||+|+.......... ......
T Consensus 77 d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~--------------------- 130 (157)
T cd00882 77 DVTDR-ESFENVKEWLLLILINK--EGENIPIILVGNKIDLPEERVVSEEE--LAEQLA--------------------- 130 (157)
T ss_pred ECcCH-HHHHHHHHHHHHHHHhh--ccCCCcEEEEEeccccccccchHHHH--HHHHHH---------------------
Confidence 99986 45555555522222211 23789999999999997654433221 000000
Q ss_pred CCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 228 IPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.....+++++|+.+|. ++++++||.+
T Consensus 131 ----------~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 131 ----------KELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred ----------hhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 0335679999999999 9999999863
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=140.91 Aligned_cols=188 Identities=21% Similarity=0.326 Sum_probs=117.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCc--ccc---eee-------------eeccccceeEeecc---cCCCccccEEEEeC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGST--HQG---TVT-------------SMEPNEDTFVLHSE---STKGKIKPVHLVDV 123 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~--~~~---~~~-------------~~~~~~~~~~~~~~---~~~~~~~~~~l~Dt 123 (267)
++|+++|+.++|||||+.+|+...- ... ... ++......+.+... ..++..+.+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999975321 000 000 01000001111110 11244678999999
Q ss_pred CCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---CCCHHHHHHH
Q 024474 124 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIRKQ 200 (267)
Q Consensus 124 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~~~~~~~~~~ 200 (267)
||+.+|......+++.+|++++|+|+.++ . .......+..... .++|+++|+||+|+.. ..++++..+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g-~-~~~t~~~l~~~~~------~~~p~ilviNKiD~~~~e~~~~~~~~~~~ 152 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEG-V-CVQTETVLRQALK------ERVKPVLVINKIDRLILELKLSPEEAYQR 152 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCC-C-CHHHHHHHHHHHH------cCCCEEEEEECCCcchhhhcCCHHHHHHH
Confidence 99999999999999999999999999986 2 2223333333332 5679999999999863 2356677777
Q ss_pred HHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC---------cchhHHHHHHhhcCC
Q 024474 201 MEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG---------EISQVEQFIREQVKP 267 (267)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---------~i~~l~~~l~~~~~p 267 (267)
+.+.+.+++........++..+. +...+.|+...+++ +.+||+.| .+..+++.+.+++||
T Consensus 153 ~~~ii~~~n~~i~~~~~~~~~~~-----~~~~~~~~p~~gnv--~f~S~~~gw~f~~~~f~~~~~~~~~~~~~~~~ 221 (222)
T cd01885 153 LARIIEQVNAIIGTYADEEFKEK-----DDEKWYFSPQKGNV--AFGSALHGWGFTIIKFARIYAVLEMVVKHLPS 221 (222)
T ss_pred HHHHHHHHhHHHHhccccccccc-----CcCCcEEeeCCCcE--EEEecccCEEeccccccchHHHHHHHHhhCCC
Confidence 77777777665554432211100 01112344334444 44788866 166778888888875
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=139.36 Aligned_cols=139 Identities=20% Similarity=0.222 Sum_probs=90.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhH----HhhhccCC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL----DEFLPQAA 141 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~~~~~~d 141 (267)
+|+++|.+|+|||||+|+|.+.... ...+....+. .. .+|||||+......+ ...++.+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-------~~~~~~v~~~-----~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-------ARKTQAVEFN-----DK----GDIDTPGEYFSHPRWYHALITTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-------CccceEEEEC-----CC----CcccCCccccCCHHHHHHHHHHHhcCC
Confidence 7999999999999999998865311 0111111111 11 269999974332222 23478999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .+. ...|+..+ ..++|+++++||+|+... ..+. +.+.+...
T Consensus 67 ~il~v~d~~~~-~s~--~~~~~~~~-------~~~~~ii~v~nK~Dl~~~-~~~~----~~~~~~~~------------- 118 (158)
T PRK15467 67 MLIYVHGANDP-ESR--LPAGLLDI-------GVSKRQIAVISKTDMPDA-DVAA----TRKLLLET------------- 118 (158)
T ss_pred EEEEEEeCCCc-ccc--cCHHHHhc-------cCCCCeEEEEEccccCcc-cHHH----HHHHHHHc-------------
Confidence 99999999976 222 22344332 146789999999998542 2222 12211111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+++++||++|+ +++|+++|.+.+
T Consensus 119 -----------------~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 119 -----------------GFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred -----------------CCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 112479999999999 999999998865
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=156.61 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-------hhHHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-------PKLDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-------~~~~~~~~ 138 (267)
.|+++|.||||||||+|+|++.+. .++.++.++............ ...+.++||||+.+-. ....+++.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ 236 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLE 236 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence 799999999999999999998653 334344433333333332221 2359999999986421 12335688
Q ss_pred cCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 139 QAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 139 ~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
.+|++++|+|++.. .+..+....++.++..... ...+.|+++|+||+|+.... ++.+.+++....+
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~-~L~~kP~IlVlNKiDl~~~~---el~~~l~~l~~~~-------- 304 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP-KLAEKPRWLVFNKIDLLDEE---EAEERAKAIVEAL-------- 304 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh-hhcCCCEEEEEeCCccCChH---HHHHHHHHHHHHh--------
Confidence 99999999998721 1345555566655554211 11468999999999986432 2222222211110
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ +++|+++|.+.++
T Consensus 305 ----------------------~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 305 ----------------------GWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred ----------------------CCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 111247899999999 9999999988764
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=155.07 Aligned_cols=151 Identities=22% Similarity=0.250 Sum_probs=109.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch---------hhHHh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR---------PKLDE 135 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~---------~~~~~ 135 (267)
+.|+++|.||||||||+|+|++... +.+...+..+++..+....+.+ ..+.++||+|.+... .....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHH
Confidence 5799999999999999999999863 4566676667776666665555 469999999988433 12345
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.+..||++|||+|...+ .....+.+.+++.. .++|+++|+||+|-..... ....+.
T Consensus 80 Ai~eADvilfvVD~~~G---it~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~e~---~~~efy------------- 135 (444)
T COG1160 80 AIEEADVILFVVDGREG---ITPADEEIAKILRR-----SKKPVILVVNKIDNLKAEE---LAYEFY------------- 135 (444)
T ss_pred HHHhCCEEEEEEeCCCC---CCHHHHHHHHHHHh-----cCCCEEEEEEcccCchhhh---hHHHHH-------------
Confidence 77899999999999886 34444444555442 6799999999999652211 111111
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. -+--+++++||..|. +.+|.+++.+.+
T Consensus 136 ---------------------s-lG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 136 ---------------------S-LGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ---------------------h-cCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 0 122257899999999 999999999886
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=156.23 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----hhh---HHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----RPK---LDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----~~~---~~~~~~ 138 (267)
.|+++|.||||||||+|+|++... .+..++.++.........+. ....+.+|||||+.+. ..+ ..+++.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~---kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP---KIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC---ccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 799999999999999999998652 22222222222222222222 1357999999997531 122 334566
Q ss_pred cCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 139 QAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 139 ~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+++++++|+|+++. .+.++....|..++..... ...++|+++|+||+|+... .+ .+++..+.+
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~-~L~~kP~IVV~NK~DL~~~--~e----~l~~l~~~l-------- 300 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP-RLLERPQIVVANKMDLPEA--EE----NLEEFKEKL-------- 300 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch-hccCCcEEEEEeCCCCcCC--HH----HHHHHHHHh--------
Confidence 79999999999753 1345555555555444211 1257899999999998422 11 111111110
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ..++++||++|+ +++|+++|.+.+
T Consensus 301 ----------------------~--~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 301 ----------------------G--PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred ----------------------C--CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 358999999999 999999998765
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=164.84 Aligned_cols=162 Identities=20% Similarity=0.219 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
.|+++|++|+|||||+++|++..............+.+........++ ..+.+|||||+++|......++.++|++++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 689999999999999999997431110000000011112222222223 689999999999998888888999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
|+|++++. .....+.+. ++.. .++| +++|+||+|+.+....+...+.+.+.+....
T Consensus 80 VVDa~~G~--~~qT~ehl~-il~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~--------------- 136 (581)
T TIGR00475 80 VVDADEGV--MTQTGEHLA-VLDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI--------------- 136 (581)
T ss_pred EEECCCCC--cHHHHHHHH-HHHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC---------------
Confidence 99999851 223333332 2322 4677 9999999999754333333333333322210
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+ ..+++++++||++|+ +++++++|.+.+
T Consensus 137 ----------~---~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 137 ----------F---LKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred ----------C---CCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 0 124579999999999 999999887653
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=162.57 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=106.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--ccc----cee-eeec---ccccee-----EeecccCCCccccEEEEeCCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQ----GTV-TSME---PNEDTF-----VLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~----~~~-~~~~---~~~~~~-----~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
+.++++++|+.++|||||+.+|+... +.. ... .+.+ ..+.++ .......++..+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45699999999999999999997531 111 000 0000 001111 11111124556789999999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
+|...+.++++.+|++|+|+|++++ ...+....|. .... .+.|+++|+||+|+.... .+...+.+.+.+.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~g-v~~qt~~~~~-~~~~------~~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg- 155 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVY-LALE------NDLEIIPVLNKIDLPAAD-PERVKQEIEDVIG- 155 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHH-HHHH------CCCCEEEEEECCCCCccc-HHHHHHHHHHHhC-
Confidence 9999999999999999999999986 2233333332 2222 578999999999986532 2222222222110
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|+ +++|+++|.+.++|
T Consensus 156 -------------------------------~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 156 -------------------------------IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred -------------------------------CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 001247999999999 99999999988764
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=159.67 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhHHhhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKLDEFL 137 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~~~~~ 137 (267)
+|+++|.+|||||||+|+|++... ..+...++.+.+........++ ..+.+|||||+.. +......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD--AIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc--ceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 589999999999999999998752 1222233333333333333333 4799999999743 333455678
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
+.+|++++|+|+.++ .......+...++. .++|+++|+||+|+....... .. +..
T Consensus 77 ~~ad~vl~vvD~~~~---~~~~d~~i~~~l~~-----~~~piilVvNK~D~~~~~~~~---~~----~~~---------- 131 (429)
T TIGR03594 77 EEADVILFVVDGREG---LTPEDEEIAKWLRK-----SGKPVILVANKIDGKKEDAVA---AE----FYS---------- 131 (429)
T ss_pred hhCCEEEEEEeCCCC---CCHHHHHHHHHHHH-----hCCCEEEEEECccCCcccccH---HH----HHh----------
Confidence 899999999999875 22222333334432 578999999999986543210 00 000
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+...++++||++|. ++++++++.+.++
T Consensus 132 ---------------------lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 132 ---------------------LGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred ---------------------cCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 111247999999999 9999999988764
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=140.40 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=94.7
Q ss_pred eEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 024474 104 FVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183 (267)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~ 183 (267)
+......+++..+.+.||||||++.++..+..+++++|++|+|||+++. .+++.+..|+..++... ..+.|+++|+
T Consensus 17 ~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~-~sf~~~~~w~~~i~~~~---~~~~piilVg 92 (176)
T PTZ00099 17 FLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNR-QSFENTTKWIQDILNER---GKDVIIALVG 92 (176)
T ss_pred EEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEE
Confidence 3333344567778999999999999999999999999999999999987 67999999999887643 2568999999
Q ss_pred ecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHH
Q 024474 184 NKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQF 260 (267)
Q Consensus 184 nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~ 260 (267)
||+|+..... .++.. .... ..+..|+++||++|+ ++++++|
T Consensus 93 NK~DL~~~~~v~~~e~~----~~~~--------------------------------~~~~~~~e~SAk~g~nV~~lf~~ 136 (176)
T PTZ00099 93 NKTDLGDLRKVTYEEGM----QKAQ--------------------------------EYNTMFHETSAKAGHNIKVLFKK 136 (176)
T ss_pred ECcccccccCCCHHHHH----HHHH--------------------------------HcCCEEEEEECCCCCCHHHHHHH
Confidence 9999964322 11111 1000 123468999999999 9999999
Q ss_pred HHhhcC
Q 024474 261 IREQVK 266 (267)
Q Consensus 261 l~~~~~ 266 (267)
|.+.++
T Consensus 137 l~~~l~ 142 (176)
T PTZ00099 137 IAAKLP 142 (176)
T ss_pred HHHHHH
Confidence 998763
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=158.75 Aligned_cols=149 Identities=22% Similarity=0.249 Sum_probs=97.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhHHhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKLDEF 136 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~~~~ 136 (267)
++|+++|.+|||||||+|+|.+.... .+....+.+.+.......+++ ..+.+|||||+.. +......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~--~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA--IVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce--eeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 58999999999999999999987531 122233333333333333334 6899999999987 23334567
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+..+|++|+|+|+.++. .....++.+.++. .+.|+++|+||+|+.... .. ..+ +..
T Consensus 78 ~~~ad~il~vvd~~~~~---~~~~~~~~~~l~~-----~~~piilv~NK~D~~~~~--~~----~~~-~~~--------- 133 (435)
T PRK00093 78 IEEADVILFVVDGRAGL---TPADEEIAKILRK-----SNKPVILVVNKVDGPDEE--AD----AYE-FYS--------- 133 (435)
T ss_pred HHhCCEEEEEEECCCCC---CHHHHHHHHHHHH-----cCCcEEEEEECccCccch--hh----HHH-HHh---------
Confidence 88999999999998752 2222233333332 478999999999965311 11 110 000
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.+.-.++++||++|. +++++++|.+
T Consensus 134 ----------------------lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 134 ----------------------LGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ----------------------cCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 001136899999999 9999999876
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=158.89 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=99.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh---------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------- 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------- 132 (267)
...++|+++|.+|+|||||+|+|++.... .+....+++.+........+ +..+.+|||||+.+....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~--~~~~~~gtt~~~~~~~~~~~--~~~~~lvDT~G~~~~~~~~~~~e~~~~ 246 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERV--IVSDIAGTTRDSIDTPFERD--GQKYTLIDTAGIRRKGKVTEGVEKYSV 246 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCceEEEEEEEEEEC--CeeEEEEECCCCCCCcchhhHHHHHHH
Confidence 35689999999999999999999986521 12222222222221111122 356899999997543221
Q ss_pred --HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 133 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 133 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
...+++.+|++|+|+|++++ .+... ...+..+.. .+.|+++|+||+|+.......++.+.+...+..
T Consensus 247 ~~~~~~~~~ad~~ilViD~~~~-~~~~~-~~i~~~~~~------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~--- 315 (435)
T PRK00093 247 IRTLKAIERADVVLLVIDATEG-ITEQD-LRIAGLALE------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPF--- 315 (435)
T ss_pred HHHHHHHHHCCEEEEEEeCCCC-CCHHH-HHHHHHHHH------cCCcEEEEEECccCCCHHHHHHHHHHHHHhccc---
Confidence 22467889999999999986 22222 222222222 578999999999997332222222222211110
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++++++||++|. ++++++++.+
T Consensus 316 ----------------------------~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 316 ----------------------------LDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred ----------------------------ccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 123578999999999 9999888765
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-19 Score=144.28 Aligned_cols=189 Identities=22% Similarity=0.276 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc--------cc-eeeeecc----ccceeEeecccCCCccccEEEEeCCCCCCchhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTH--------QG-TVTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK 132 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~--------~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 132 (267)
+|+++|++|+|||||+++|+...-. .. ...+..+ .+.+.......+..+..++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999763210 00 0000000 011111222222344578999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
+..+++.+|++++|+|++++. ......+.+.+.. .++|+++|+||+|+.... .....+.+++.+.. ..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~---~~~~~~~~~~~~~-----~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~---~~ 148 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGV---QAQTRILWRLLRK-----LNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSS---DI 148 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCC---CHHHHHHHHHHHH-----cCCCEEEEEECccccCCC-HHHHHHHHHHHHCC---Ce
Confidence 999999999999999999862 2222223333332 578999999999998653 34444444443321 11
Q ss_pred hcccc----------c-----------ccccc-ccCCCCCCCcccccc----------cceeEEEEeeeccCc-chhHHH
Q 024474 213 SAVSE----------A-----------DVTND-FTLGIPGQAFSFSQC----------HNKVSVAEASGLTGE-ISQVEQ 259 (267)
Q Consensus 213 ~~~~~----------~-----------~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~-i~~l~~ 259 (267)
-.+.. . +.+++ .+....+.+++-+++ ..-++++..||.++. +..|++
T Consensus 149 ~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~ 228 (237)
T cd04168 149 VPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLE 228 (237)
T ss_pred EEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHH
Confidence 11100 0 00000 000001122222221 245678888999999 999999
Q ss_pred HHHhhcC
Q 024474 260 FIREQVK 266 (267)
Q Consensus 260 ~l~~~~~ 266 (267)
.|.+++|
T Consensus 229 ~~~~~~p 235 (237)
T cd04168 229 GITKLFP 235 (237)
T ss_pred HHHHhcC
Confidence 9999886
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=133.33 Aligned_cols=116 Identities=28% Similarity=0.390 Sum_probs=81.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+|+|++|||||||+++|++..+...... ......++.............+.+||++|++.+...+..++..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVP-EETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS---------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccc-cccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence 799999999999999999999876411111 1111223333333334444469999999999888877777999999999
Q ss_pred EEeCCCCCCchHHHH---HHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 146 VVDALEFLPNCSAAS---EYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 146 v~d~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
|||+++. .++..+. .|+..+... ..++|+++|+||.|
T Consensus 80 v~D~s~~-~s~~~~~~~~~~l~~~~~~----~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDP-ESLEYLSQLLKWLKNIRKR----DKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGH-HHHHHHHHHHHHHHHHHHH----SSCSEEEEEEE-TC
T ss_pred EEcCCCh-HHHHHHHHHHHHHHHHHcc----CCCCCEEEEEeccC
Confidence 9999986 5677764 445555432 25699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-19 Score=159.53 Aligned_cols=183 Identities=20% Similarity=0.287 Sum_probs=105.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC---CCcc----------ccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST---KGKI----------KPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~~l~DtpG~~~ 128 (267)
.+.+.|+++|++|+|||||+++|.+..+.......+..+.+....+.... .+.. -.+++|||||+++
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 46678999999999999999999876542222111111111111111000 0100 1278999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--------------H
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------K 194 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~ 194 (267)
|..++...++.+|++++|+|++++. .......+. .+. ..++|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~--~~qt~e~i~-~~~-----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGF--QPQTIEAIN-ILK-----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCC--CHhHHHHHH-HHH-----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 9999888899999999999998741 111222222 222 25789999999999853211 1
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 195 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
..+.+.+.+.+..+... +...+...+.. ....+....+.++++||++|+ +++|.+.+.
T Consensus 156 ~~v~~~f~~~l~ev~~~---L~~~g~~~e~~-------~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 156 QRVQQELEEKLYELIGQ---LSELGFSADRF-------DRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred HHHHHHHHHHHHHHHHH---HHhcCCChhhh-------hhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 11222222222222111 11111111000 001223567889999999999 988887765
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=160.41 Aligned_cols=169 Identities=20% Similarity=0.264 Sum_probs=113.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc--CCcccceeee-----e----ccccceeEeecccCCCccccEEEEeCCCCCCchhhH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD--GSTHQGTVTS-----M----EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL 133 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~--~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 133 (267)
++|+++|+.++|||||+++|+. +.+....... . ...+.+.......+.++.+.+++|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 4899999999999999999985 2222111000 0 001222222223334455789999999999999999
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..+++.+|++++|+|+.++ .......++..+.. .++|+++|+||+|+.... ..++.+.+...+..+...
T Consensus 82 ~~~l~~aD~alLVVDa~~G--~~~qT~~~l~~a~~------~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~g~~-- 150 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG--PMPQTRFVLKKALE------LGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAELGAD-- 150 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC--CcHHHHHHHHHHHH------CCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhhccc--
Confidence 9999999999999999875 24455556655544 678999999999986543 333444444444332100
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccC----------c-chhHHHHHHhhcCC
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----------E-ISQVEQFIREQVKP 267 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----------~-i~~l~~~l~~~~~p 267 (267)
+-...++++++||++| + ++.|++.|.+++++
T Consensus 151 -----------------------~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 151 -----------------------DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred -----------------------cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 0012356899999999 3 88999999988864
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=130.51 Aligned_cols=161 Identities=26% Similarity=0.318 Sum_probs=114.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc--ceeeee--cc---ccceeEeecccCCCccccEEEEeCCCCCCchhhHH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSM--EP---NEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD 134 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~--~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 134 (267)
....||+++|+.++||||++.++....... ...++. .. ++....+.....++ ...+.++|||||.+|.-+|+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHH
Confidence 456799999999999999999998765311 011111 11 11112222222222 25799999999999999999
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
-+.+++.++|+++|.+.+ ..+ ....+.+++.. ...+|++|++||.||.+..+++.+++.+...+
T Consensus 87 ~l~~ga~gaivlVDss~~-~~~--~a~~ii~f~~~----~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~--------- 150 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRP-ITF--HAEEIIDFLTS----RNPIPVVVAINKQDLFDALPPEKIREALKLEL--------- 150 (187)
T ss_pred HHhCCcceEEEEEecCCC-cch--HHHHHHHHHhh----ccCCCEEEEeeccccCCCCCHHHHHHHHHhcc---------
Confidence 999999999999999987 333 33444455543 13399999999999999999998888777522
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++.+|..++ ..+.++.|..+
T Consensus 151 -------------------------~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 -------------------------LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred -------------------------CCCceeeeecccchhHHHHHHHHHhh
Confidence 24578999999999 66666666554
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-19 Score=141.34 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccc--e--------------------eeeec----cccceeEeecccCCCccccEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQG--T--------------------VTSME----PNEDTFVLHSESTKGKIKPVH 119 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~--~--------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~ 119 (267)
+|+++|++|+|||||+++|+...-.-. . ..... ..+.+.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975321000 0 00000 001111111112223346899
Q ss_pred EEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCC-CcEEEEEecCCCCC
Q 024474 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK-IPVLICCNKTDKVT 190 (267)
Q Consensus 120 l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~pvivv~nK~Dl~~ 190 (267)
+|||||+.+|.......++.+|++|+|+|++++. ..... ....++.. .+ .++++|+||+|+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~--~~~~~-~~~~~~~~-----~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV--LEQTR-RHSYILSL-----LGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc--cHhHH-HHHHHHHH-----cCCCcEEEEEEchhccc
Confidence 9999999888777777889999999999998752 11121 22222221 23 45788999999864
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=132.98 Aligned_cols=155 Identities=25% Similarity=0.252 Sum_probs=98.0
Q ss_pred EEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHHhhhccCC
Q 024474 69 LAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLDEFLPQAA 141 (267)
Q Consensus 69 i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~~~~~~~d 141 (267)
++|++|+|||||++++++..... .....+.+......... ......+.+|||||+.++.. ....+++.+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--VSPVPGTTTDPVEYVWE-LGPLGPVVLIDTPGIDEAGGLGREREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--cCCCCCcEECCeEEEEE-ecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence 58999999999999999865421 11111111111111111 11135899999999876543 3445788999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+... ....... +..... ..+.|+++|+||+|+..........+....
T Consensus 78 ~il~v~~~~~~-~~~~~~~-~~~~~~------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~------------------ 131 (163)
T cd00880 78 LILFVVDADLR-ADEEEEK-LLELLR------ERGKPVLLVLNKIDLLPEEEEEELLELRLL------------------ 131 (163)
T ss_pred EEEEEEeCCCC-CCHHHHH-HHHHHH------hcCCeEEEEEEccccCChhhHHHHHHHHHh------------------
Confidence 99999999986 3333322 233332 268899999999999765433322210000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
........+++++||++|. +++++++|.+.+
T Consensus 132 -------------~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 132 -------------ILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred -------------hcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 0011345679999999999 999999998763
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-19 Score=129.65 Aligned_cols=136 Identities=24% Similarity=0.268 Sum_probs=90.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC----CchhhHHhhhccC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS----RLRPKLDEFLPQA 140 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~----~~~~~~~~~~~~~ 140 (267)
.||+++|+.|+|||||+++|.+.......+.. ..+ .=.++||||-- .+..-......+|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~-------i~~----------~~~~IDTPGEyiE~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQA-------IEY----------YDNTIDTPGEYIENPRFYHALIVTAQDA 64 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccce-------eEe----------cccEEECChhheeCHHHHHHHHHHHhhC
Confidence 48999999999999999999987642211111 111 12369999931 2223333445689
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT-AHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|+|++|.|++++...+..-.. . -.++|+|=|+||+|+.. +.+.+..++.++.
T Consensus 65 d~V~ll~dat~~~~~~pP~fa---~--------~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~---------------- 117 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPGFA---S--------MFNKPVIGVITKIDLPSDDANIERAKKWLKN---------------- 117 (143)
T ss_pred CEEEEEecCCCCCccCCchhh---c--------ccCCCEEEEEECccCccchhhHHHHHHHHHH----------------
Confidence 999999999986333332221 1 15689999999999983 3333333333332
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.+.-.+|++|+.+|+ +++|.++|.+
T Consensus 118 -------------------aG~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 118 -------------------AGVKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred -------------------cCCCCeEEEECCCCcCHHHHHHHHhC
Confidence 112246999999999 9999999975
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=157.02 Aligned_cols=171 Identities=19% Similarity=0.244 Sum_probs=112.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc--CCccccee-----eeec----cccceeEeecccCCCccccEEEEeCCCCCCchh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQGTV-----TSME----PNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
+.++|+++|+.++|||||+++|+. +.+..... .... ..+.++......+..+.+.+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456999999999999999999986 33322110 0000 112223333333445568999999999999999
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
.+..+++.+|++|+|+|+.++. .......+..... .++|+++|+||+|+..+... ...+.+...+..+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~--~~qt~~~l~~a~~------~gip~IVviNKiD~~~a~~~-~vl~ei~~l~~~l--- 151 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGP--MPQTRFVTKKAFA------YGLKPIVVINKVDRPGARPD-WVVDQVFDLFVNL--- 151 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCc--cHHHHHHHHHHHH------cCCCEEEEEECcCCCCCchh-HHHHHHHHHHhcc---
Confidence 9999999999999999998751 2233333433333 67899999999998765433 2333333332211
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-----------chhHHHHHHhhcCC
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVKP 267 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~p 267 (267)
... .....++++++||++|. +..|++.|.++++|
T Consensus 152 ----~~~------------------~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 152 ----DAT------------------DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred ----Ccc------------------ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 000 00224678999999995 56788888888874
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=140.66 Aligned_cols=184 Identities=19% Similarity=0.211 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeec---------ccccee---------Ee-----ec----------ccCC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSME---------PNEDTF---------VL-----HS----------ESTK 112 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~---------~~~~~~---------~~-----~~----------~~~~ 112 (267)
||+++|+.++|||||+++|..+.+..+.-.... ..+.+. .. +. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997665332111000 000000 00 00 0011
Q ss_pred CccccEEEEeCCCCCCchhhHHhhhc--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 113 GKIKPVHLVDVPGHSRLRPKLDEFLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
..+..++++||||+.+|.......+. .+|++++|+|+..+. ......+...+.. .++|+++|+||+|+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~---~~~d~~~l~~l~~-----~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI---IGMTKEHLGLALA-----LNIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC---cHHHHHHHHHHHH-----cCCCEEEEEECccccC
Confidence 22357999999999988766555554 689999999998752 2222222233322 6789999999999865
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 191 AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
........+.+.+.+........+.-.....+.. ....... ....+++|.+||.+|+ +++|.++|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~---~~~~~~~---~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVV---LAASNFS---SERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeeccccee---ehhhcCC---ccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 4334444444444433211111111000000000 0001111 1345589999999999 9999999875
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-18 Score=135.98 Aligned_cols=180 Identities=20% Similarity=0.252 Sum_probs=109.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccce-------eeee-------ccccceeEeecc-----cCCCccccEEEEeCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT-------VTSM-------EPNEDTFVLHSE-----STKGKIKPVHLVDVPG 125 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-------~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~l~DtpG 125 (267)
++|+++|++|+|||||+++|+........ .... ...+.++..... ..++..+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 37999999999999999999874422110 0000 000111111111 1134457899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC---CCHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRKQME 202 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~---~~~~~~~~~l~ 202 (267)
+.++......++..+|++++|+|+++. .+. ....++..... .+.|+++|+||+|+... ....+..+.+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~-~~~-~~~~~~~~~~~------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~ 152 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEG-VTS-NTERLIRHAIL------EGLPIVLVINKIDRLILELKLPPNDAYFKLR 152 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCC-CCH-HHHHHHHHHHH------cCCCEEEEEECcccCcccccCCHHHHHHHHH
Confidence 999988888999999999999999876 222 22333333322 45899999999998632 12344445566
Q ss_pred HHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-ch--------hHHHHHHhhcC
Q 024474 203 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS--------QVEQFIREQVK 266 (267)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~--------~l~~~l~~~~~ 266 (267)
+.++.++.......... +..|... +..++++||+.|- +. +|++.|.++++
T Consensus 153 ~~i~~~n~~~~~~~~~~------------~~~~~p~--~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 153 HIIDEVNNIIASFSTTL------------SFLFSPE--NGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHHHHHhcCCC------------ceEeccC--CCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 55555544433322111 0112211 2346678998885 55 77888777765
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=148.80 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=112.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh----------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK---------- 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---------- 132 (267)
...+|+++|.||+|||||+|+|++.+ +..+.....++.+........++ ..+.++||+|...-...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgee--R~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~ 252 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEE--RVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVA 252 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCc--eEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeeh
Confidence 46899999999999999999999976 33444555555554444433344 47899999997642222
Q ss_pred -HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC--CCHHHHHHHHHHHHHHHH
Q 024474 133 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 133 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~l~~~~~~~~ 209 (267)
....+..+|++++|+|++.+ +.+....+..+... .+.++++|+||+|+... ...++.++.+.+.+..
T Consensus 253 rt~~aI~~a~vvllviDa~~~---~~~qD~~ia~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~-- 322 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEG---ISEQDLRIAGLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPF-- 322 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCC---chHHHHHHHHHHHH-----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcc--
Confidence 22467789999999999987 55555555554443 78899999999999875 3344455555554332
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
-...+++.+||++|. ++++++++.+-
T Consensus 323 -----------------------------l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 323 -----------------------------LDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred -----------------------------ccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 223468889999999 99998887653
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=158.97 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=101.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
-|+++|++++|||||+++|++..............+....+..... ..+..+.+|||||+++|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~-~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ-PDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec-CCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 5899999999999999999874321100000000011111111111 122358999999999987777788899999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
|+|++++. .....+.+ .++.. .++| +++|+||+|+.+....+...+.+.+.+....
T Consensus 81 VVda~eg~--~~qT~ehl-~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~--------------- 137 (614)
T PRK10512 81 VVACDDGV--MAQTREHL-AILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYG--------------- 137 (614)
T ss_pred EEECCCCC--cHHHHHHH-HHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcC---------------
Confidence 99998751 22222332 33332 3455 5799999999753333333333333222110
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
..+.+++++||++|+ +++|+++|.+...|
T Consensus 138 --------------~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 138 --------------FAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred --------------CCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 113568999999999 99999999876543
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=161.77 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=99.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKL 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~ 133 (267)
...++|+++|.+|+|||||+|+|++... ..+...+..+.+........+ +..+.+|||||+.. +....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~ 348 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDAEWA--GTDFKLVDTGGWEADVEGIDSAIASQA 348 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEEEEC--CEEEEEEeCCCcCCCCccHHHHHHHHH
Confidence 3457899999999999999999998653 112222222222222222222 35799999999763 23344
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..+++.+|++|+|+|++++ +......+.+.++. .++|+++|+||+|+..... . ... ...
T Consensus 349 ~~~~~~aD~iL~VvDa~~~---~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~--~----~~~-~~~------ 407 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVG---LTSTDERIVRMLRR-----AGKPVVLAVNKIDDQASEY--D----AAE-FWK------ 407 (712)
T ss_pred HHHHHhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEECcccccchh--h----HHH-HHH------
Confidence 5678899999999999875 23333333334432 6789999999999853211 0 000 000
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+... ..+++||++|. +++|+++|.+.++
T Consensus 408 ------------------------lg~~-~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 408 ------------------------LGLG-EPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred ------------------------cCCC-CeEEEECCCCCCchHHHHHHHHhcc
Confidence 0111 24689999999 9999999988764
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=162.21 Aligned_cols=152 Identities=22% Similarity=0.216 Sum_probs=100.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh----------H
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK----------L 133 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----------~ 133 (267)
..+|+++|+||+|||||+|+|++... .+.+.+.++.+ .....+......+++|||||+.++... .
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~---~vgn~pGvTve--~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~ 77 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ---RVGNWAGVTVE--RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCceEe--eEEEEEEcCceEEEEEECCCccccccccccccHHHHHH
Confidence 46899999999999999999998654 22222222222 222223344468999999998776431 2
Q ss_pred Hhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 134 DEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 134 ~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
..++ ..+|++++|+|+++.+. ...+..++.+ .+.|+++|+||+|+.+........+.+++
T Consensus 78 ~~~l~~~~aD~vI~VvDat~ler----~l~l~~ql~e------~giPvIvVlNK~Dl~~~~~i~id~~~L~~-------- 139 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLER----NLYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIDIDALSA-------- 139 (772)
T ss_pred HHHHhccCCCEEEEEecCCcchh----hHHHHHHHHH------cCCCEEEEEEchhhhhccCcHHHHHHHHH--------
Confidence 2343 47999999999987522 2233344433 67899999999998754433222222222
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ ++++.+.+.+..
T Consensus 140 ---------------------------~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 ---------------------------RLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ---------------------------HhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 123468999999999 999999987753
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-20 Score=137.17 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=105.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+|++|+|..++||||++.+++.+-|...+..++ +.++......+++..+++.+|||+|+++|......|++++.+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktI---gvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI---GVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccccccccccc---chhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 45699999999999999999999888766555555 455666666667777889999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
.++||+-++. .+++...+|...+.... ..+|.++|-||+|+....
T Consensus 96 ~vLVFSTTDr-~SFea~~~w~~kv~~e~----~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 96 SVLVFSTTDR-YSFEATLEWYNKVQKET----ERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred eEEEEecccH-HHHHHHHHHHHHHHHHh----ccCCeEEeeccchhhHhh
Confidence 9999999997 78999999999988764 789999999999998654
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=152.74 Aligned_cols=170 Identities=19% Similarity=0.175 Sum_probs=103.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccee-----eeeccccceeE------------eecccC-CC------cccc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV-----TSMEPNEDTFV------------LHSEST-KG------KIKP 117 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~-~~------~~~~ 117 (267)
.+..+|+++|++++|||||+++|.+........ .++......+. +..... +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356799999999999999999997642211000 00100000000 000000 11 1357
Q ss_pred EEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH
Q 024474 118 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 197 (267)
Q Consensus 118 ~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 197 (267)
+++|||||+++|...+...+..+|++++|+|++++. ......+.+..+ .. ....|+++|+||+|+.......+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~~qt~e~l~~l-~~----~gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-PQPQTKEHLMAL-EI----IGIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-cccchHHHHHHH-HH----cCCCeEEEEEEccccCCHHHHHHH
Confidence 999999999999888888888999999999999741 012222333322 21 123468999999999753222222
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 198 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+.+.+.+... ...+++++++||++|+ +++|+++|.+.++
T Consensus 156 ~~~i~~~l~~~-----------------------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKGT-----------------------------VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhhc-----------------------------ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22222211100 0224579999999999 9999999998754
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=154.51 Aligned_cols=172 Identities=19% Similarity=0.179 Sum_probs=102.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccce--------------------eee----eccccceeEeecccCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VTS----MEPNEDTFVLHSESTKGK 114 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~--------------------~~~----~~~~~~~~~~~~~~~~~~ 114 (267)
..+..+|+++|+.++|||||+++|+.. .+.... ... -...+.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 356679999999999999999999852 211100 000 000112222222223444
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS-AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
.+.+++|||||+++|.......+..+|++++|+|++++..... ....++ .+.... ...|+++|+||+|+.....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~----~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL----GINQLIVAINKMDSVNYDE 158 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc----CCCeEEEEEEChhccCccH
Confidence 5789999999999887777777889999999999988621111 111111 122211 2357999999999974221
Q ss_pred --HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chh------------HH
Q 024474 194 --KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ------------VE 258 (267)
Q Consensus 194 --~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~------------l~ 258 (267)
.+...+.+++.+.... +. ...+.++++||++|+ +++ |+
T Consensus 159 ~~~~~~~~ei~~~~~~~g-------------------------~~--~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~ 211 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVG-------------------------YN--PDTVPFIPISAWNGDNVIKKSENTPWYKGKTLL 211 (426)
T ss_pred HHHHHHHHHHHHHHHHcC-------------------------CC--cccceEEEeeccccccccccccCCccccchHHH
Confidence 1122233333222110 00 134689999999999 764 77
Q ss_pred HHHHhh
Q 024474 259 QFIREQ 264 (267)
Q Consensus 259 ~~l~~~ 264 (267)
+.|.+.
T Consensus 212 ~~l~~~ 217 (426)
T TIGR00483 212 EALDAL 217 (426)
T ss_pred HHHhcC
Confidence 888653
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=159.48 Aligned_cols=144 Identities=22% Similarity=0.298 Sum_probs=93.9
Q ss_pred cCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh------HHhhh--ccCCE
Q 024474 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK------LDEFL--PQAAG 142 (267)
Q Consensus 71 G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------~~~~~--~~~d~ 142 (267)
|++|+|||||+|++++.... +...+..+.+........++ ..+++|||||+.++... ...++ +.+|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~---v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDv 75 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT---VGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDL 75 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe---ecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCE
Confidence 89999999999999987642 22222222222222222233 46899999999876543 33343 37899
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. +....+..++.+ .++|+++|+||+|+..........+.+.+
T Consensus 76 vI~VvDat~l----er~l~l~~ql~~------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~------------------- 126 (591)
T TIGR00437 76 VVNVVDASNL----ERNLYLTLQLLE------LGIPMILALNLVDEAEKKGIRIDEEKLEE------------------- 126 (591)
T ss_pred EEEEecCCcc----hhhHHHHHHHHh------cCCCEEEEEehhHHHHhCCChhhHHHHHH-------------------
Confidence 9999999874 222333333333 57899999999998654332211122221
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++++||++|+ ++++++++.+.
T Consensus 127 ----------------~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 127 ----------------RLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred ----------------HcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 123578999999999 99999999764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=161.43 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=100.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----------hhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----------RPK 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----------~~~ 132 (267)
..++|+++|.+|||||||+|+|++.... .+....+++.+.......+++ ..+.+|||||+.+. ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~--~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERA--VVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc--ccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHH
Confidence 4589999999999999999999987631 122233333332222222333 36789999996421 111
Q ss_pred -HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 133 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 133 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
...+++.+|++++|+|++++ .+.... .++..+.. .++|+++|+||+|+......+ .+++.+...
T Consensus 525 r~~~~i~~advvilViDat~~-~s~~~~-~i~~~~~~------~~~piIiV~NK~DL~~~~~~~----~~~~~~~~~--- 589 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQP-ISEQDL-KVMSMAVD------AGRALVLVFNKWDLMDEFRRQ----RLERLWKTE--- 589 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCC-CCHHHH-HHHHHHHH------cCCCEEEEEEchhcCChhHHH----HHHHHHHHh---
Confidence 12357889999999999986 334333 23333332 578999999999997532222 222222210
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.. ....+++++||++|+ ++++++.+.+.+
T Consensus 590 -----------------------l~~-~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 590 -----------------------FDR-VTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred -----------------------ccC-CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 000 112356889999999 999998887653
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-18 Score=151.56 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--ccc-------------e-------eee----eccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQG-------------T-------VTS----MEPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~~-------------~-------~~~----~~~~~~~~~~~~~~~~~~~ 115 (267)
.+..+|+++|++++|||||+++|+...- ... . ... -...+.+.......+..+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4567999999999999999999984321 100 0 000 0011222222222233445
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+.+.+|||||+++|.......++.+|++++|+|+++. ........+...+.... ...|+++|+||+|+..
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~-~~~~~~~~~~~~~~~~~----~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA-GGVMPQTREHVFLARTL----GINQLIVAINKMDAVN 153 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC-CCCCcchHHHHHHHHHc----CCCeEEEEEEcccccc
Confidence 7899999999998877666677899999999999872 11222222222222221 2246999999999975
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=138.13 Aligned_cols=121 Identities=21% Similarity=0.146 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--cccc-------------e-------eeeec----cccceeEeecccCCCccccEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGS--THQG-------------T-------VTSME----PNEDTFVLHSESTKGKIKPVH 119 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~--~~~~-------------~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~ 119 (267)
+|+++|++++|||||+.+|+... ..+. . ..... ..+.+.......+...+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999986321 1000 0 00000 001111111112233457899
Q ss_pred EEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCC----ch-HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP----NC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 120 l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~----~~-~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
+|||||+.++.......++.+|++|+|+|+++... .. ......+ ..... ....|+++|+||+|+...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART----LGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH----cCCCeEEEEEEccccccc
Confidence 99999998887777778889999999999987410 01 1122222 12221 133689999999999743
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=128.71 Aligned_cols=156 Identities=23% Similarity=0.317 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----------hhhHHh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----------RPKLDE 135 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----------~~~~~~ 135 (267)
.|+++|++|+|||||+|.+.+..+......+. +.+........++ .+.+|||||+... ......
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~---~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 74 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTP---GKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEE 74 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCC---CcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHH
Confidence 37999999999999999999644322111111 1112222222222 7899999997542 233344
Q ss_pred hhc---cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 136 FLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 136 ~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
++. ..+++++++|...... .....+...+.. .+.|+++|+||+|+............+...+..
T Consensus 75 ~~~~~~~~~~~~~v~d~~~~~~---~~~~~~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~----- 141 (170)
T cd01876 75 YLENRENLKGVVLLIDSRHGPT---EIDLEMLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKL----- 141 (170)
T ss_pred HHHhChhhhEEEEEEEcCcCCC---HhHHHHHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh-----
Confidence 444 3578999999876421 111222222321 458999999999986443333333333322221
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
......++++||++|. ++++.++|.+++
T Consensus 142 -------------------------~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 142 -------------------------FEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred -------------------------ccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 0223468899999999 999999998864
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-18 Score=148.57 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=105.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-------eee----eccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-------VTS----MEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.++..+|+++|++++|||||+++|++.....+. ... -...+.+.......+......+.++||||+.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 456789999999999999999999863210000 000 001122222222223334457899999999988
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCCH-HHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTK-EFIRKQMEKEIDK 207 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~-~~~~~~l~~~~~~ 207 (267)
.......+..+|++++|+|+.++. .....+.+..+.. .++| +++|+||+|+...... +.+.+.+++.+..
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~--~~~t~~~~~~~~~------~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~ 160 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ------VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 777777778899999999998751 2223333333322 5677 6789999998643221 1122233333322
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC--------c-chhHHHHHHhhcC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG--------E-ISQVEQFIREQVK 266 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g--------~-i~~l~~~l~~~~~ 266 (267)
+. +. ..+++++++||++| . +.+|++.|.++++
T Consensus 161 ~~-------------------------~~--~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 161 YD-------------------------FP--GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred hC-------------------------CC--cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 10 00 12468999999998 2 6788888888765
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-18 Score=147.60 Aligned_cols=172 Identities=18% Similarity=0.205 Sum_probs=104.1
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc--e-----e----eeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--T-----V----TSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
+.++..+|+++|++++|||||+++|++...... . . ..-...+.+.......+......+.++||||+.+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 346678999999999999999999986210000 0 0 0000112222222222233345789999999988
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCCCCC-HHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVTAHT-KEFIRKQMEKEID 206 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~-~~~~~~~l~~~~~ 206 (267)
|.......+..+|++++|+|+.++. .....+.+..+.. .++|.+ +++||+|+..... .+.+.+.+++.+.
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~--~~qt~e~l~~~~~------~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 8777777788999999999998751 2223333333222 567855 5799999974211 1222223333222
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC----------c-chhHHHHHHhhcC
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----------E-ISQVEQFIREQVK 266 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----------~-i~~l~~~l~~~~~ 266 (267)
.+. + ...+++++++||++| + +.+|++.|.+.++
T Consensus 160 ~~~-------------------------~--~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYD-------------------------F--PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcC-------------------------C--CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 210 0 012468999999998 3 6788888887664
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-18 Score=148.31 Aligned_cols=172 Identities=20% Similarity=0.196 Sum_probs=101.7
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-----eeeeccccceeEe------------ecc-cCC------Ccc
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-----VTSMEPNEDTFVL------------HSE-STK------GKI 115 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-----~~~~~~~~~~~~~------------~~~-~~~------~~~ 115 (267)
+..+.++|+++|+.++|||||+.+|.+....... -.|+......+.. ... ..+ ...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4567789999999999999999999653211100 0111111000000 000 000 012
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 195 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 195 (267)
..+++|||||+.+|..........+|++++|+|++++. ........+. .+.. ....|+++|+||+|+.......
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~-~~~~t~~~l~-~l~~----~~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC-PQPQTKEHLM-ALDI----IGIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-CChhHHHHHH-HHHH----cCCCcEEEEEEeeccccchhHH
Confidence 57999999999888766666667789999999999741 0112222222 2221 1224689999999997543222
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 196 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+.+.+.+... ...+++++++||++|+ +++|+++|.+.++
T Consensus 159 ~~~~~i~~~l~~~-----------------------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 159 ENYEQIKEFVKGT-----------------------------VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHhccc-----------------------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 1122222211100 0224578999999999 9999999998765
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=143.21 Aligned_cols=164 Identities=18% Similarity=0.273 Sum_probs=116.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+-|.++|+...|||||+..+.+..........+....+.+.+..... ....+.|+|||||+.|..+..+-..-+|
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~--~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI--KIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC--CCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence 46678999999999999999999987765444333433334444433211 2246999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+.++ -..+..+-+. .++ ..+.|++|++||+|.... ++..+..++++.
T Consensus 81 IaILVVa~dDG--v~pQTiEAI~-hak-----~a~vP~iVAiNKiDk~~~-np~~v~~el~~~----------------- 134 (509)
T COG0532 81 IAILVVAADDG--VMPQTIEAIN-HAK-----AAGVPIVVAINKIDKPEA-NPDKVKQELQEY----------------- 134 (509)
T ss_pred EEEEEEEccCC--cchhHHHHHH-HHH-----HCCCCEEEEEecccCCCC-CHHHHHHHHHHc-----------------
Confidence 99999999986 2233333333 333 288999999999999844 444444444431
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
++.-+...+.+.++++||++|+ +++|++.|.-
T Consensus 135 ----------gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 135 ----------GLVPEEWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred ----------CCCHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 1222233566899999999999 9999987753
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=135.10 Aligned_cols=82 Identities=24% Similarity=0.271 Sum_probs=54.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-------hhHHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-------PKLDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-------~~~~~~~~ 138 (267)
+++++|++|+|||||+|+|++.... +...+.++.+.......++ +..+++|||||+.+.. .....+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~---v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~ 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE---VAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVAR 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc---ccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhc
Confidence 7899999999999999999986531 1112211111111111112 3579999999985432 22345789
Q ss_pred cCCEEEEEEeCCCC
Q 024474 139 QAAGIVFVVDALEF 152 (267)
Q Consensus 139 ~~d~ii~v~d~~~~ 152 (267)
.+|++++|+|+++.
T Consensus 77 ~ad~il~V~D~t~~ 90 (233)
T cd01896 77 TADLILMVLDATKP 90 (233)
T ss_pred cCCEEEEEecCCcc
Confidence 99999999999875
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=137.67 Aligned_cols=122 Identities=18% Similarity=0.218 Sum_probs=81.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC--cccc-e----------eeeecc----ccceeEeecccCCCccccEEEEeCCCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGS--THQG-T----------VTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~-~----------~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
.++|+++|++|+|||||+++|+... ..+. . +....+ .+.++......+...++.+++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 3589999999999999999997521 1110 0 000000 011122222233455678999999999
Q ss_pred CCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 127 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
.+|......+++.+|++|+|+|++++ .+.....+.+... ..++|+++++||+|+.....
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g---~~~~~~~i~~~~~-----~~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKG---VEPQTRKLFEVCR-----LRGIPIITFINKLDREGRDP 140 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCC---ccHHHHHHHHHHH-----hcCCCEEEEEECCccCCCCH
Confidence 99888888889999999999999875 2222222333333 25789999999999876543
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=145.28 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=78.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc--ce--e-eee------ccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GT--V-TSM------EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~--~~--~-~~~------~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
..+..+|+++|++++|||||+++|++..... .. . ... ...+.+.......+..+...+.++||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4566899999999999999999998642100 00 0 000 00111111111122234457899999999988
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVT 190 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~ 190 (267)
.......+..+|++++|+|+..+. .....+.+. ++.. .++| +++++||+|+..
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~-~~~~-----~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGP--MPQTKEHIL-LAKQ-----VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHH-HHHH-----cCCCEEEEEEEccCCCC
Confidence 777778888999999999998751 222333333 3321 5678 778999999975
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=123.97 Aligned_cols=163 Identities=22% Similarity=0.317 Sum_probs=102.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----------h
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----------R 130 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----------~ 130 (267)
....+-|+++|.+|||||||+|+|++++-- +.++.. .+.|...+...+++ .+.++|.||.... .
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L-ArtSkt--PGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNL-ARTSKT--PGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcce-eecCCC--CCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHH
Confidence 346778999999999999999999996521 112212 24445555555554 3889999997632 2
Q ss_pred hhHHhhhcc---CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 131 PKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 131 ~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
.+..+|++. ..++++++|+..+ .......+.+.+.. .++|+++|+||+|.............+.+.+..
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~---~~~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHP---PKDLDREMIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCC---CcHHHHHHHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 334556643 4689999999886 33333344444443 789999999999987654333222222221110
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. .....++..|+.++. +++|.+.|.+++.
T Consensus 167 ----------------------------~~-~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 167 ----------------------------PP-PDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ----------------------------CC-CccceEEEEecccccCHHHHHHHHHHHhh
Confidence 00 111015566777777 9999999888764
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-17 Score=135.68 Aligned_cols=130 Identities=23% Similarity=0.243 Sum_probs=81.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeee---------ccc----cceeEeecccCCCccccEEEEeCCCCCCchhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM---------EPN----EDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK 132 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 132 (267)
+|+++|++|+|||||+++|+..........+. .+. ..+.......+....+.+++|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532110000001 000 00011111112233468999999999988888
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
+..+++.+|++++|+|++.+ ... .....+.. +. ..++|+++|+||+|+... ......+.+++.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g-~~~-~~~~~~~~-~~-----~~~~p~iivvNK~D~~~~-~~~~~~~~l~~~ 143 (268)
T cd04170 81 TRAALRAADAALVVVSAQSG-VEV-GTEKLWEF-AD-----EAGIPRIIFINKMDRERA-DFDKTLAALQEA 143 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCC-CCH-HHHHHHHH-HH-----HcCCCEEEEEECCccCCC-CHHHHHHHHHHH
Confidence 88999999999999999886 222 22222222 22 267899999999998765 333444444443
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=133.63 Aligned_cols=187 Identities=21% Similarity=0.236 Sum_probs=106.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh----------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---------- 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---------- 131 (267)
.+...|+++|.||+|||||.|.+++.+.. ..+-...+++.........+ ...+.|+||||.-.-..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~---~vS~K~~TTr~~ilgi~ts~-eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVS---AVSRKVHTTRHRILGIITSG-ETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccc---cccccccceeeeeeEEEecC-ceEEEEecCCcccccchhhhHHHHHHh
Confidence 45678999999999999999999998752 22333333333332222223 35899999999653211
Q ss_pred --hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHH-HHHHH
Q 024474 132 --KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQME-KEIDK 207 (267)
Q Consensus 132 --~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~-~~~~~ 207 (267)
...+.+..||++++|+|+++....+.. ..+..+.. ...+|-++|.||+|....... -.....+. ..+..
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~-----ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~ 218 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHP--RVLHMLEE-----YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK 218 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHH-----HhcCCceeeccchhcchhhhHHhhhHHhccccccch
Confidence 122466789999999999963122211 11111111 167889999999998765432 11111111 11111
Q ss_pred HHh-hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 208 LRA-SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 208 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
... ..++..... +..+......+++ --++|.+||++|+ |++|.+||....+|
T Consensus 219 ~kl~v~~~f~~~p-----~~~~~~~~~gwsh---fe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 219 LKLEVQEKFTDVP-----SDEKWRTICGWSH---FERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhhhHHHHhccCC-----cccccccccCccc---ceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 000 000000000 0000000111222 2258999999999 99999999998876
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-17 Score=140.71 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=114.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--ccc-----c----------eeeeeccccceeEeecccCCCccccEEEEeCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ-----G----------TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVP 124 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dtp 124 (267)
.+.+++.|+.+...|||||..+|+... .+. . .--|+..++....+. +++.+.++++|||
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~----~~~~ylLNLIDTP 133 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYK----DGQSYLLNLIDTP 133 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEE----cCCceEEEeecCC
Confidence 466799999999999999999985421 000 0 001233333332222 3677899999999
Q ss_pred CCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 125 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
||-+|+....+.+.-||++|+|+|++.+ -..+.... ++..++ .+..+|.|+||+|+..+ .++.+...+.+.
T Consensus 134 GHvDFs~EVsRslaac~G~lLvVDA~qG-vqAQT~an-f~lAfe------~~L~iIpVlNKIDlp~a-dpe~V~~q~~~l 204 (650)
T KOG0462|consen 134 GHVDFSGEVSRSLAACDGALLVVDASQG-VQAQTVAN-FYLAFE------AGLAIIPVLNKIDLPSA-DPERVENQLFEL 204 (650)
T ss_pred CcccccceehehhhhcCceEEEEEcCcC-chHHHHHH-HHHHHH------cCCeEEEeeeccCCCCC-CHHHHHHHHHHH
Confidence 9999999999999999999999999987 22222333 333333 67789999999999866 445555544443
Q ss_pred HHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 205 IDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
+. ..+-+++-+|||+|- ++++++.|.++++|
T Consensus 205 F~--------------------------------~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 205 FD--------------------------------IPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred hc--------------------------------CCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 32 112267889999999 99999999999998
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=147.80 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc--CCcccc-ee----------eeecc----ccceeEeecccCCCccccEEEEeCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-TV----------TSMEP----NEDTFVLHSESTKGKIKPVHLVDVPG 125 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG 125 (267)
+.++|+|+|++|+|||||+++|+. +..... .+ ....+ .+.++......+..+++.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 567999999999999999999963 211110 00 00000 01112222222344557899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
+.+|......+++.+|++|+|+|++++ .+.....+..... ..++|+++++||+|+.... ..++.+.+++.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~g---v~~~t~~l~~~~~-----~~~iPiiv~iNK~D~~~a~-~~~~l~~i~~~ 158 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKG---VEPQTRKLMEVCR-----LRDTPIFTFINKLDRDGRE-PLELLDEIEEV 158 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCC---CCHHHHHHHHHHH-----hcCCCEEEEEECCcccccC-HHHHHHHHHHH
Confidence 999998888899999999999999875 2222222333333 2689999999999987654 33334444443
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-17 Score=140.51 Aligned_cols=161 Identities=24% Similarity=0.339 Sum_probs=119.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++.+-|-|+|+...|||||+..|.+..+.......+....+.|.+... +| -+++|.|||||..|..+..+-.+.+|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p--~G--~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP--SG--KSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC--CC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence 577889999999999999999999877644433334333444554433 34 58999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+.+.++ -..+..+-+.... ..+.|+++.+||+|.+.+. ++.+.+.+-.
T Consensus 227 IvVLVVAadDG--VmpQT~EaIkhAk------~A~VpiVvAinKiDkp~a~-pekv~~eL~~------------------ 279 (683)
T KOG1145|consen 227 IVVLVVAADDG--VMPQTLEAIKHAK------SANVPIVVAINKIDKPGAN-PEKVKRELLS------------------ 279 (683)
T ss_pred EEEEEEEccCC--ccHhHHHHHHHHH------hcCCCEEEEEeccCCCCCC-HHHHHHHHHH------------------
Confidence 99999999986 2333333333332 2789999999999987554 4333333321
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
.+...+++.++++++++||++|+ ++.|.+.+.
T Consensus 280 ---------~gi~~E~~GGdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 280 ---------QGIVVEDLGGDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred ---------cCccHHHcCCceeEEEeecccCCChHHHHHHHH
Confidence 22335566899999999999999 999988764
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.2e-17 Score=145.01 Aligned_cols=135 Identities=18% Similarity=0.223 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--CCcccc-ee----------eeecc----ccceeEeecccCCCccccEEEEeCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-TV----------TSMEP----NEDTFVLHSESTKGKIKPVHLVDVP 124 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~l~Dtp 124 (267)
.+.++|+++|++|+|||||+++|+. +..... .+ ....+ .+.++......++...+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4667999999999999999999853 221110 00 00000 0111222223334556789999999
Q ss_pred CCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 125 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
|+.+|......+++.+|++|+|+|++++ .......+.+.... .++|+++++||+|+... ...++.+.++..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g---v~~~t~~l~~~~~~-----~~~PiivviNKiD~~~~-~~~~ll~~i~~~ 159 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG---VETRTRKLMEVTRL-----RDTPIFTFMNKLDRDIR-DPLELLDEVENE 159 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEECccccCC-CHHHHHHHHHHH
Confidence 9999888888899999999999999875 33333333344432 67899999999998644 344555555544
Q ss_pred H
Q 024474 205 I 205 (267)
Q Consensus 205 ~ 205 (267)
+
T Consensus 160 l 160 (527)
T TIGR00503 160 L 160 (527)
T ss_pred h
Confidence 4
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-17 Score=141.90 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=77.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-------eee----eccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-------VTS----MEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.++..+|+++|+.++|||||+++|++.....+. ... -...+.+.......+...+..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 356678999999999999999999743100000 000 000112222222223334467999999999988
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCC
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVT 190 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvi-vv~nK~Dl~~ 190 (267)
.......+..+|++++|+|+.++. .....+.+..+.. .++|.+ +|+||+|+.+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~--~~qt~e~l~~~~~------~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEEEecccCC
Confidence 777777778899999999998751 2222333333322 467755 6899999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-17 Score=140.33 Aligned_cols=201 Identities=14% Similarity=0.177 Sum_probs=145.8
Q ss_pred cchhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcc
Q 024474 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTH 90 (267)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~ 90 (267)
.......+..++.+++...++....+...++.+.+..+..++.+ .....+++++|.||+|||||+|.++....
T Consensus 121 dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~rlPsI------Dp~trTlllcG~PNVGKSSf~~~vtradv- 193 (620)
T KOG1490|consen 121 DSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSRLPAI------DPNTRTLLVCGYPNVGKSSFNNKVTRADD- 193 (620)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC------CCCcCeEEEecCCCCCcHhhccccccccc-
Confidence 45677778889999999999999999999999998888888765 78899999999999999999999887654
Q ss_pred cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh----HHh----hh-ccCCEEEEEEeCCCCC-CchHHHH
Q 024474 91 QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK----LDE----FL-PQAAGIVFVVDALEFL-PNCSAAS 160 (267)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~~~----~~-~~~d~ii~v~d~~~~~-~~~~~~~ 160 (267)
.+..+..++..+. ...++.+..+++++||||..+.... .+. .+ .--.+|+|++|++..+ .+..+..
T Consensus 194 --evqpYaFTTksL~--vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qv 269 (620)
T KOG1490|consen 194 --EVQPYAFTTKLLL--VGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQV 269 (620)
T ss_pred --ccCCcccccchhh--hhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHH
Confidence 3344444444333 3333555578999999997653211 111 11 1235799999998742 4677777
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccc
Q 024474 161 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHN 240 (267)
Q Consensus 161 ~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (267)
..+..+... ..+.|+|+|+||+|+.+..+..+-.+.+-+.+.. .+
T Consensus 270 kLfhsIKpL----FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~-------------------------------~~ 314 (620)
T KOG1490|consen 270 KLYHSIKPL----FANKVTILVLNKIDAMRPEDLDQKNQELLQTIID-------------------------------DG 314 (620)
T ss_pred HHHHHhHHH----hcCCceEEEeecccccCccccCHHHHHHHHHHHh-------------------------------cc
Confidence 777666542 3789999999999998887766555444443332 45
Q ss_pred eeEEEEeeeccCc-chhH
Q 024474 241 KVSVAEASGLTGE-ISQV 257 (267)
Q Consensus 241 ~~~~~~~Sa~~g~-i~~l 257 (267)
++.+++.|..+.+ +-++
T Consensus 315 ~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 315 NVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred CceEEEecccchhceeeH
Confidence 6789999999888 5443
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=126.04 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=67.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhh-----hcc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEF-----LPQ 139 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-----~~~ 139 (267)
.+|+++|.+|+|||||+|.|++................+....... ......+.+|||||..+.....+.| +.+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYP-HPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeee-cCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 5899999999999999999998654321111111000000000000 1112368999999987543333333 567
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+|+++++.|. . +......+.+.+.. .+.|+++|+||+|+..
T Consensus 81 ~d~~l~v~~~-~----~~~~d~~~~~~l~~-----~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 81 YDFFIIISST-R----FSSNDVKLAKAIQC-----MGKKFYFVRTKVDRDL 121 (197)
T ss_pred cCEEEEEeCC-C----CCHHHHHHHHHHHH-----hCCCEEEEEecccchh
Confidence 8998887442 2 33333333333332 4679999999999853
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=137.16 Aligned_cols=175 Identities=19% Similarity=0.162 Sum_probs=110.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCCchHHHHHHH----HH---HHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHH
Q 024474 13 MEQWKKELEEWLNRGIEFINQIPPTQLYIACA----VL---LLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
|+.....+.+.+++.++|.+..+....+.... .. .+...+.......+-+.+..|+|+|+||+|||||+|.|.
T Consensus 210 ~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~ 289 (531)
T KOG1191|consen 210 WRKILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALS 289 (531)
T ss_pred HHHHHHHHHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHh
Confidence 45555667888888899977766554442222 22 222222222223344678999999999999999999999
Q ss_pred cCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-chhh--------HHhhhccCCEEEEEEeCCCCC-Cc
Q 024474 86 DGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-LRPK--------LDEFLPQAAGIVFVVDALEFL-PN 155 (267)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-~~~~--------~~~~~~~~d~ii~v~d~~~~~-~~ 155 (267)
+.+ ...++..+.++.+.....+.++| +++.+.||+|..+ -... ....+..+|++++|+|+.... .+
T Consensus 290 ~~d--rsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~s 365 (531)
T KOG1191|consen 290 RED--RSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTES 365 (531)
T ss_pred cCC--ceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccccc
Confidence 976 34566666666665555555555 7899999999876 2111 234678899999999994320 22
Q ss_pred hHHHHHHHHHHHhcCC---CCCCCCcEEEEEecCCCCCC
Q 024474 156 CSAASEYLYDILTNST---VVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 156 ~~~~~~~l~~~~~~~~---~~~~~~pvivv~nK~Dl~~~ 191 (267)
...+.+.+...-.-.. ......|++++.||.|+...
T Consensus 366 d~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 366 DLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred chHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 2233333333222100 01145789999999999754
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-17 Score=134.19 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=81.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--ccc-ce------eeeecc----ccceeEeecccCCCccccEEEEeCCCCCCchhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGS--THQ-GT------VTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK 132 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~--~~~-~~------~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 132 (267)
+|+++|++|+|||||+++|+... ... +. +....+ .+.+.......+......++++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996421 110 00 000001 011111111112234468999999999999888
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
+..+++.+|++|+|+|+.++. ......+..... ..++|+++++||+|+.+. ..+...+.+++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~---~~~t~~~~~~~~-----~~~~p~ivviNK~D~~~a-~~~~~~~~l~~ 142 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGV---EPQTETVWRQAD-----RYNVPRIAFVNKMDRTGA-DFFRVVEQIRE 142 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCC---CHHHHHHHHHHH-----HcCCCEEEEEECCCCCCC-CHHHHHHHHHH
Confidence 999999999999999998752 222222222332 267899999999998754 33333444443
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=139.59 Aligned_cols=172 Identities=19% Similarity=0.205 Sum_probs=102.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-------eee----eccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-------VTS----MEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.++..+|+++|++++|||||+++|++....... ... -...+.+.......+..+...+.++||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 456789999999999999999999863110000 000 001111222222222333457899999999888
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
.......+..+|++++|+|+..+. .......+ .++.. .++|.+ +++||+|+... ++..+.+.+.+..+
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~--~~qt~~~~-~~~~~-----~g~p~iiVvvNK~D~~~~---~~~~~~~~~~i~~~ 157 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGP--MPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDD---EELLELVEMEVREL 157 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCC--chHHHHHH-HHHHH-----cCCCEEEEEEeecCCcch---HHHHHHHHHHHHHH
Confidence 777777888999999999998751 22222333 23322 567876 58999999642 22222233222222
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-----------chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~ 266 (267)
-.... +. ..+++++++||++|. +.+|++.|.+.++
T Consensus 158 l~~~~---------------------~~--~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 158 LSKYD---------------------FP--GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHhcC---------------------CC--ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 10000 00 234678999999863 4678888887654
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=141.70 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=79.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc------ccce-e----eeeccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST------HQGT-V----TSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~------~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.++..+|+++|++++|||||+++|+.... .... . ..-...+.+.......+..+...+.++||||+.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45678999999999999999999985211 0000 0 00000111111111112233458999999999998
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVT 190 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~ 190 (267)
.......+..+|++++|+|+.++. .....+++..+.. .++| +++++||+|+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~--~~qt~e~~~~~~~------~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGP--MPQTKEHILLAKQ------VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCeEEEEEecccccC
Confidence 888788888999999999999762 2333344433322 5677 788999999965
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-17 Score=119.02 Aligned_cols=174 Identities=21% Similarity=0.305 Sum_probs=123.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.-|++++|..|+|||||++.|.++.. ...+++..|+..... +. +++++-+|.+|+..-+..|..|+..+|
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~-----Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~ 89 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELS-----IG--GMTFTTFDLGGHLQARRVWKDYFPQVD 89 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHhe-----ec--CceEEEEccccHHHHHHHHHHHHhhhc
Confidence 4667999999999999999999988764 334555555433322 22 368999999999998999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++.+|+.+. ..+.+....+..++....+ ...|+++.+||+|...+...++.+..+. -.....+. +.
T Consensus 90 ~iv~lvda~d~-er~~es~~eld~ll~~e~l--a~vp~lilgnKId~p~a~se~~l~~~l~----l~~~t~~~----~~- 157 (193)
T KOG0077|consen 90 AIVYLVDAYDQ-ERFAESKKELDALLSDESL--ATVPFLILGNKIDIPYAASEDELRFHLG----LSNFTTGK----GK- 157 (193)
T ss_pred eeEeeeehhhH-HHhHHHHHHHHHHHhHHHH--hcCcceeecccccCCCcccHHHHHHHHH----HHHHhccc----cc-
Confidence 99999999987 6688888888777765432 7899999999999988775544433322 11111110 00
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+ ...-...+.++.||...+. .-+.+.|+..++
T Consensus 158 --v~~--------~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 158 --VNL--------TDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred --ccc--------cCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 000 0011356778889999888 777888887765
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=129.43 Aligned_cols=159 Identities=20% Similarity=0.271 Sum_probs=101.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcc--cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHH
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLD 134 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~ 134 (267)
...+.++|.||+|||||+|+|...+.. ....+|..|+.++.. +++. ..+.+-|.||..+-.. ..-
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~-----yddf-~q~tVADiPGiI~GAh~nkGlG~~FL 269 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVN-----YDDF-SQITVADIPGIIEGAHMNKGLGYKFL 269 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceee-----cccc-ceeEeccCccccccccccCcccHHHH
Confidence 447889999999999999999986531 122344555544322 2222 2499999999764332 244
Q ss_pred hhhccCCEEEEEEeCCCCC--CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 135 EFLPQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
+++.+|+.++||+|++.+. +.++.......++ +.......+.|.++|+||+|+..+. .+.+++...++
T Consensus 270 rHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~EL-e~yek~L~~rp~liVaNKiD~~eae-----~~~l~~L~~~l---- 339 (366)
T KOG1489|consen 270 RHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEEL-ELYEKGLADRPALIVANKIDLPEAE-----KNLLSSLAKRL---- 339 (366)
T ss_pred HHHHhhceEEEEEECCCcccCCHHHHHHHHHHHH-HHHhhhhccCceEEEEeccCchhHH-----HHHHHHHHHHc----
Confidence 6788899999999998751 1233333322222 2111123788999999999986221 11122222221
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+..++++||++|+ +++|++.|++.+
T Consensus 340 ---------------------------q~~~V~pvsA~~~egl~~ll~~lr~~~ 366 (366)
T KOG1489|consen 340 ---------------------------QNPHVVPVSAKSGEGLEELLNGLRELL 366 (366)
T ss_pred ---------------------------CCCcEEEeeeccccchHHHHHHHhhcC
Confidence 12258999999999 999999998753
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=139.18 Aligned_cols=170 Identities=19% Similarity=0.201 Sum_probs=103.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccce--------------------eeee----ccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VTSM----EPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~--------------------~~~~----~~~~~~~~~~~~~~~~~~ 115 (267)
.+..+|+++|+.++|||||+.+|+.. ...... .... ...+.+............
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45678999999999999999998651 111000 0000 001112222222234455
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCC--ch---HHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP--NC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~---~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
..++|+||||+.+|.......+..+|++++|+|+..+.- .+ ....+.+. ++.. .++| +|+++||+|..
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~-----~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT-----LGVKQMIVCINKMDDK 158 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH-----cCCCeEEEEEEccccc
Confidence 789999999999998888888999999999999987510 00 12333333 2221 5665 67999999954
Q ss_pred CCC----CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-ch---------
Q 024474 190 TAH----TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS--------- 255 (267)
Q Consensus 190 ~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~--------- 255 (267)
... ..+++.+.+...+..+. +. ..+++++++||.+|+ +.
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g-------------------------~~--~~~~~~ipiSa~~g~ni~~~~~~~~Wy 211 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVG-------------------------YN--PEKVPFIPISGWQGDNMIEKSDNMPWY 211 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcC-------------------------CC--cccceEEEeecccCCCcccCCCCCccc
Confidence 321 12223333333222210 00 135789999999999 75
Q ss_pred ---hHHHHHHhh
Q 024474 256 ---QVEQFIREQ 264 (267)
Q Consensus 256 ---~l~~~l~~~ 264 (267)
.|++.|.+.
T Consensus 212 ~G~tL~~~l~~~ 223 (446)
T PTZ00141 212 KGPTLLEALDTL 223 (446)
T ss_pred chHHHHHHHhCC
Confidence 388887664
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=140.78 Aligned_cols=119 Identities=19% Similarity=0.158 Sum_probs=72.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC--ccc-------------ce---------eeeecc----ccceeEeecccCCCccc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS--THQ-------------GT---------VTSMEP----NEDTFVLHSESTKGKIK 116 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~--~~~-------------~~---------~~~~~~----~~~~~~~~~~~~~~~~~ 116 (267)
.+|+++|++++|||||+++|+... ... +. .....+ .+.+.............
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 379999999999999999986432 110 00 000000 01111111112233446
Q ss_pred cEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 117 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
++.++||||+.+|.......+..+|++++|+|+..+.. ....+ ...+.... ...++++|+||+|+..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~--~qt~~-~~~~~~~~----~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL--EQTRR-HSYIASLL----GIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc--cccHH-HHHHHHHc----CCCcEEEEEEeccccc
Confidence 89999999999987777778889999999999987521 11111 12222211 2236899999999974
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=139.82 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=77.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc----cccee---ee----eccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST----HQGTV---TS----MEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~----~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.++..+|+++|++++|||||+++|.+... ..... .. -...+.+.......+......+.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 45678999999999999999999973210 00000 00 000122222222223334467999999999988
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVT 190 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~ 190 (267)
.......+..+|++++|+|+.++. .....+.+. ++.. .++| +++++||+|+..
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~-~~~~-----~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGP--MPQTKEHIL-LARQ-----VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHH-HHHH-----cCCCeEEEEEEeeccCC
Confidence 777767777899999999998751 222223232 3322 5678 578999999974
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.2e-16 Score=137.65 Aligned_cols=123 Identities=17% Similarity=0.146 Sum_probs=75.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC--ccc-------------cee---------eeec----cccceeEeecccCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ-------------GTV---------TSME----PNEDTFVLHSESTK 112 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~-------------~~~---------~~~~----~~~~~~~~~~~~~~ 112 (267)
.+...+|+++|++++|||||+++|+... ... +.. .... ..+.+.........
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4677899999999999999999987532 111 000 0000 00111112112223
Q ss_pred CccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 113 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.....+.++||||+.+|.......+..+|++++|+|+..+... ..... ..+.... ...|+++|+||+|+..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~--qt~~~-~~l~~~l----g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD--QTRRH-SFIATLL----GIKHLVVAVNKMDLVD 174 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc--cchHH-HHHHHHh----CCCceEEEEEeecccc
Confidence 3446899999999998876666678999999999999875211 11111 1122110 2247899999999974
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=147.34 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeec-------------cccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSME-------------PNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+|+|++|+|||||+++|+...-......... ..+.+.......+...+..+++|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 3567999999999999999999974221000000000 011111111122223346899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
+......+++.+|++++|+|+.++ ...+ ....+. .+. ..++|+++|+||+|+..+. .....+.+.+
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g-~~~~-~~~~~~-~~~-----~~~~p~ivviNK~D~~~~~-~~~~~~~i~~ 153 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGG-VQPQ-SETVWR-QAN-----RYEVPRIAFVNKMDKTGAN-FLRVVNQIKQ 153 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCC-CChh-HHHHHH-HHH-----HcCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 888888999999999999999875 2222 222222 222 2578999999999998643 3344444443
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-16 Score=138.41 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=105.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc-------ceeeeeccccce------------e-Eeeccc-----C--CC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-------GTVTSMEPNEDT------------F-VLHSES-----T--KG 113 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~-------~~~~~~~~~~~~------------~-~~~~~~-----~--~~ 113 (267)
+....+|+++|+...|||||+.+|++....+ +.+......... + ...... . .+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 4677899999999999999999999743211 111011000000 0 000000 0 00
Q ss_pred ----ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 114 ----KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 114 ----~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
....+.++||||+++|.......+..+|++++|+|+.++ .......+.+. ++... .-.|+++|+||+|+.
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g-~~~~qT~ehl~-i~~~l----gi~~iIVvlNKiDlv 184 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES-CPQPQTSEHLA-AVEIM----KLKHIIILQNKIDLV 184 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC-ccchhhHHHHH-HHHHc----CCCcEEEEEeccccc
Confidence 013689999999998877777778899999999999874 11122223332 22211 224689999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
+.....+..+.+.+.+... ....++++++||++|+ +++|+++|.++++|
T Consensus 185 ~~~~~~~~~~ei~~~l~~~-----------------------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGT-----------------------------IADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred CHHHHHHHHHHHHHHHHhh-----------------------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 5333333333333322210 0234579999999999 99999999987764
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-16 Score=137.86 Aligned_cols=121 Identities=20% Similarity=0.181 Sum_probs=79.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC--cccce--------------------eeee----ccccceeEeecccCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT--------------------VTSM----EPNEDTFVLHSESTKGK 114 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~~--------------------~~~~----~~~~~~~~~~~~~~~~~ 114 (267)
.++..+|+++|+.++|||||+.+|+... ..+.. .... ...+.+...........
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3456789999999999999999886421 11000 0000 00122222222223445
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCch-------HHHHHHHHHHHhcCCCCCCCC-cEEEEEecC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNC-------SAASEYLYDILTNSTVVKKKI-PVLICCNKT 186 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~-pvivv~nK~ 186 (267)
...++++||||+.+|.......+..+|++|+|+|+.++ .+ ....+.+.. .. ..++ ++++++||+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G--~~e~g~~~~~qT~eh~~~-~~-----~~gi~~iIV~vNKm 155 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG--GFEAGISKDGQTREHALL-AF-----TLGVKQMICCCNKM 155 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC--ceecccCCCchHHHHHHH-HH-----HcCCCcEEEEEEcc
Confidence 57899999999999999999999999999999999874 22 233333322 22 1456 478899999
Q ss_pred CCC
Q 024474 187 DKV 189 (267)
Q Consensus 187 Dl~ 189 (267)
|+.
T Consensus 156 D~~ 158 (447)
T PLN00043 156 DAT 158 (447)
T ss_pred cCC
Confidence 986
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=127.80 Aligned_cols=156 Identities=23% Similarity=0.315 Sum_probs=105.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc--cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc---------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL--------- 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~--------- 129 (267)
...-+.|.++|..|+|||||+|+|++.... +.-..|..|++....... +..+.+-||-|+-+-
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~------g~~vlLtDTVGFI~~LP~~LV~AF 262 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD------GRKVLLTDTVGFIRDLPHPLVEAF 262 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC------CceEEEecCccCcccCChHHHHHH
Confidence 356789999999999999999999976542 122345666655544331 357999999997542
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 209 (267)
++..+ -...+|+++.|+|++++ . ......-..+++..... ..+|+|+|.||+|+...... ...+. .
T Consensus 263 ksTLE-E~~~aDlllhVVDaSdp-~-~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~~~~~---~~~~~----~-- 328 (411)
T COG2262 263 KSTLE-EVKEADLLLHVVDASDP-E-ILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLEDEEI---LAELE----R-- 328 (411)
T ss_pred HHHHH-HhhcCCEEEEEeecCCh-h-HHHHHHHHHHHHHHcCC--CCCCEEEEEecccccCchhh---hhhhh----h--
Confidence 22222 23579999999999997 3 44444444555554332 56899999999998754330 00000 0
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+ ..+.+||++|+ ++.|++.|.+.++
T Consensus 329 -----------------------------~~~-~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 329 -----------------------------GSP-NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred -----------------------------cCC-CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 111 46889999999 9999999988764
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-16 Score=145.13 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=75.7
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCc--ccc------------ee--eeec------------cccceeEeecccC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGST--HQG------------TV--TSME------------PNEDTFVLHSEST 111 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~~------------~~--~~~~------------~~~~~~~~~~~~~ 111 (267)
..++..+|+++|++++|||||+++|+...- ... .. .++. ..+.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345678999999999999999999986421 100 00 0000 0011111111122
Q ss_pred CCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 112 KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 112 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
......+.++||||+.+|.......+..+|++++|+|+..+.. ....+.+. ++.. ....|+++|+||+|+..
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~--~~t~e~~~-~~~~----~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL--TQTRRHSF-IASL----LGIRHVVLAVNKMDLVD 171 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc--ccCHHHHH-HHHH----hCCCeEEEEEEeccccc
Confidence 2334578999999998877666667889999999999987521 11111111 1221 12357889999999964
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=147.08 Aligned_cols=134 Identities=25% Similarity=0.264 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cc------c-eeeeecc----ccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQ------G-TVTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~------~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+++|+.|+|||||+++|+...- .. . ...+..+ .+.+..............+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 3567999999999999999999975321 00 0 0000000 01111111112233457899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
|...+..+++.+|++++|+|++++ ..... ...+..+ . ..++|+++|+||+|+... ......+.++..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~-~~~~~-~~~~~~~-~-----~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~ 152 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTG-VQPQT-ETVWRQA-D-----RYGIPRLIFINKMDRVGA-DLFKVLEDIEER 152 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCC-CCHHH-HHHHHHH-H-----hcCCCEEEEEECCCCCCC-CHHHHHHHHHHH
Confidence 999999999999999999999886 23332 2222222 2 257899999999999865 333333444433
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-16 Score=139.53 Aligned_cols=152 Identities=25% Similarity=0.274 Sum_probs=107.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh------hHHhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP------KLDEF 136 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~------~~~~~ 136 (267)
+..+++++|+||+|||||+|+|++.+. .+...+..+.+...... ..++..++++|.||.-+..+ ..++|
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q---~VgNwpGvTVEkkeg~~--~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ 76 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ---KVGNWPGVTVEKKEGKL--KYKGHEIEIVDLPGTYSLTAYSEDEKVARDF 76 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc---eecCCCCeeEEEEEEEE--EecCceEEEEeCCCcCCCCCCCchHHHHHHH
Confidence 345799999999999999999999765 44444433333333333 33335799999999654432 24445
Q ss_pred hc--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 137 LP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 137 ~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
+. ..|+++-|+|+++- +.......++++ .+.|++++.|++|........--.+.+++
T Consensus 77 ll~~~~D~ivnVvDAtnL----eRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~----------- 135 (653)
T COG0370 77 LLEGKPDLIVNVVDATNL----ERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSK----------- 135 (653)
T ss_pred HhcCCCCEEEEEcccchH----HHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHH-----------
Confidence 43 47999999999984 444444445554 78999999999998766554444444444
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++++||++|+ ++++++.+.+.
T Consensus 136 ------------------------~LGvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 136 ------------------------LLGVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred ------------------------HhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 345689999999999 99999888764
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=123.34 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-----hHHhhhccC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-----KLDEFLPQA 140 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-----~~~~~~~~~ 140 (267)
||+++|+.++||||+.+.+..+-.+.. +....+|.. ....... ......+++||+||+..+-. ..+..++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~-ve~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTID-VEKSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----S-EEEEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCC-ceEEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 799999999999999999887653322 222333322 1111111 12336899999999976543 356788999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|||+|+... .......++...+.......+++.+.|+++|+|+..+....+..+...+.+.+.-....
T Consensus 78 ~~LIyV~D~qs~--~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~------- 148 (232)
T PF04670_consen 78 GVLIYVFDAQSD--DYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG------- 148 (232)
T ss_dssp SEEEEEEETT-S--TCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred CEEEEEEEcccc--cHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc-------
Confidence 999999999853 24444444444443322234789999999999998765555555555555443321100
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCcchhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~ 265 (267)
...+.|+.+|-.+..+-+-..-+...+
T Consensus 149 ------------------~~~~~~~~TSI~D~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 149 ------------------IEDITFFLTSIWDESLYEAWSKIVQKL 175 (232)
T ss_dssp -------------------TSEEEEEE-TTSTHHHHHHHHHHHTT
T ss_pred ------------------ccceEEEeccCcCcHHHHHHHHHHHHH
Confidence 114678889988876433333333333
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.4e-16 Score=131.80 Aligned_cols=163 Identities=20% Similarity=0.286 Sum_probs=115.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cc-----ccee----------eeeccccceeEeecccCCCccccEEEEeCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--TH-----QGTV----------TSMEPNEDTFVLHSESTKGKIKPVHLVDVP 124 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~-----~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dtp 124 (267)
.+.+++.|+.+-..|||||..||+... .. .... -|+..+.....+. .-+++.+.++++|||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk--~~~g~~Y~lnlIDTP 84 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYK--AKDGETYVLNLIDTP 84 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEE--eCCCCEEEEEEcCCC
Confidence 345689999999999999999986421 00 0000 1233333322222 225677999999999
Q ss_pred CCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 125 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
||-+|.-...+.+.-|.+.++|+|++.+ -..+.+...+. .+. .+..++-|+||+||+.+ +++.++++++..
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQG-veAQTlAN~Yl-Ale------~~LeIiPViNKIDLP~A-dpervk~eIe~~ 155 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYL-ALE------NNLEIIPVLNKIDLPAA-DPERVKQEIEDI 155 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccc-hHHHHHHHHHH-HHH------cCcEEEEeeecccCCCC-CHHHHHHHHHHH
Confidence 9999999999999999999999999987 22333333332 222 56779999999999754 566666666654
Q ss_pred HHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 205 IDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
+. -..-..+.||||+|. |+++++.|.+++||
T Consensus 156 iG--------------------------------id~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 156 IG--------------------------------IDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred hC--------------------------------CCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 33 112246789999999 99999999999987
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-15 Score=108.39 Aligned_cols=129 Identities=21% Similarity=0.322 Sum_probs=89.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccce-eEeecccCCCccccEEEEeCCCCCCc-hhhHHhhhc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDT-FVLHSESTKGKIKPVHLVDVPGHSRL-RPKLDEFLP 138 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~DtpG~~~~-~~~~~~~~~ 138 (267)
-.+..|++++|.-++|||+++.+|..++... -+...|+..+ +........+..-.+.++||+|.... ..+-.+|++
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~--~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVP--GTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCC--CCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 3567899999999999999999998765322 1223333333 33333333454457999999998877 455667888
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 194 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 194 (267)
-+|++++|||..+. .+++.....-.++-+.. .+..+||++.+||+|+..+...
T Consensus 84 ~aDafVLVYs~~d~-eSf~rv~llKk~Idk~K--dKKEvpiVVLaN~rdr~~p~~v 136 (198)
T KOG3883|consen 84 FADAFVLVYSPMDP-ESFQRVELLKKEIDKHK--DKKEVPIVVLANKRDRAEPREV 136 (198)
T ss_pred cCceEEEEecCCCH-HHHHHHHHHHHHHhhcc--ccccccEEEEechhhcccchhc
Confidence 99999999999987 56665433333332222 2478999999999999755443
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=109.99 Aligned_cols=107 Identities=23% Similarity=0.314 Sum_probs=68.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh---------hHHhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---------KLDEF 136 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---------~~~~~ 136 (267)
+|+++|.+|+|||||+|+|++... ..+....+++..........++ ..+.++||||..+... .....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~--~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL--AKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQ 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS--SEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccc--ccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHH
Confidence 689999999999999999998542 1233333333333332222333 4678999999865311 12334
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
+..+|++++|+|+.+. .......+.+.++ .+.|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~---~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNP---ITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSH---SHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCC---CCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 5789999999997663 2222222222222 67899999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=128.28 Aligned_cols=85 Identities=26% Similarity=0.360 Sum_probs=55.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeec----------------ccCCC-ccccEEEEeCCCC-
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHS----------------ESTKG-KIKPVHLVDVPGH- 126 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~l~DtpG~- 126 (267)
|+++|.||+|||||+|+|++.....+. -+++.|+.+...... ...++ ..+.+++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642111 133344433222211 00122 3367999999998
Q ss_pred ---CCchhhHHh---hhccCCEEEEEEeCCC
Q 024474 127 ---SRLRPKLDE---FLPQAAGIVFVVDALE 151 (267)
Q Consensus 127 ---~~~~~~~~~---~~~~~d~ii~v~d~~~ 151 (267)
.++..+... +++.+|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 344444344 5899999999999974
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-16 Score=112.75 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=121.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
-..||.++|++..|||||+-.+.++.+.+....+. +..+......+.+..+.+.+||..|++++..+.+-...++-+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~---GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTL---GVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHh---CccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 45699999999999999999999988654444333 334455555566777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
++|+||.+.+ +.+....+|+.+..... +..+| |+|++|-|+.-..+++... .+.+....+-.
T Consensus 96 IlFmFDLt~r-~TLnSi~~WY~QAr~~N---ktAiP-ilvGTKyD~fi~lp~e~Q~-~I~~qar~YAk------------ 157 (205)
T KOG1673|consen 96 ILFMFDLTRR-STLNSIKEWYRQARGLN---KTAIP-ILVGTKYDLFIDLPPELQE-TISRQARKYAK------------ 157 (205)
T ss_pred EEEEEecCch-HHHHHHHHHHHHHhccC---Cccce-EEeccchHhhhcCCHHHHH-HHHHHHHHHHH------------
Confidence 9999999997 78999999999887753 35666 6899999987665554332 22222222110
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+...+.||+...- +..++..+-.+
T Consensus 158 ----------------~mnAsL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 158 ----------------VMNASLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred ----------------HhCCcEEEeeccccccHHHHHHHHHHH
Confidence 223456778887776 88877765443
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=141.32 Aligned_cols=135 Identities=20% Similarity=0.217 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cccc-e------eeeec----cccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQG-T------VTSME----PNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~-~------~~~~~----~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+|+|++++|||||+++|+... .... . ..+.. ..+.+...........+..++++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 456799999999999999999997421 1000 0 00000 001111111111222346899999999998
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
+...+...++.+|++|+|+|+.++ .......+...+. ..++|+++++||+|+.... .....+.+++.+
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g---~~~qt~~i~~~~~-----~~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l 153 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSG---VEPQSETVWRQAD-----KYGVPRIVFVNKMDRIGAD-FFRSVEQIKDRL 153 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCC---CCHHHHHHHHHHH-----HcCCCEEEEEECCCCCCCC-HHHHHHHHHHHh
Confidence 888888999999999999999876 2222223333332 2678999999999998643 334444444433
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=123.45 Aligned_cols=208 Identities=20% Similarity=0.185 Sum_probs=119.5
Q ss_pred cchhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCc-
Q 024474 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGST- 89 (267)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~- 89 (267)
+..+..+..-+..++++++.+++..+..... +..++..+.. ...+...|.|.|+||+|||||++.|...-.
T Consensus 11 ~l~~~~~~g~~~a~a~~it~~e~~~~~~~~~--~~~l~~~~~~------~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 11 ELVEGVLAGDRAALARAITLVESTRPDHRAL--AQELLDALLP------HTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCchhhHH--HHHHHHHHhh------cCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344444445788999999999987753211 1122222211 134667899999999999999998643110
Q ss_pred --ccceeeeeccccc---------------------eeEeecc-----------------cCCCccccEEEEeCCCCCCc
Q 024474 90 --HQGTVTSMEPNED---------------------TFVLHSE-----------------STKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 90 --~~~~~~~~~~~~~---------------------~~~~~~~-----------------~~~~~~~~~~l~DtpG~~~~ 129 (267)
..-.+.+.+|... .+..... ..+..++.+.|+||+|...-
T Consensus 83 ~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs 162 (332)
T PRK09435 83 QGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQS 162 (332)
T ss_pred CCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccc
Confidence 0111112222111 0111100 01223478999999998743
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 209 (267)
... ....+|.++++.++..+ +.+.....- ++. +.-++|+||+|+............+.+.+....
T Consensus 163 ~~~---i~~~aD~vlvv~~p~~g-d~iq~~k~g---i~E--------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~ 227 (332)
T PRK09435 163 ETA---VAGMVDFFLLLQLPGAG-DELQGIKKG---IME--------LADLIVINKADGDNKTAARRAAAEYRSALRLLR 227 (332)
T ss_pred hhH---HHHhCCEEEEEecCCch-HHHHHHHhh---hhh--------hhheEEeehhcccchhHHHHHHHHHHHHHhccc
Confidence 222 45679999999875544 334333321 222 123899999999865544444444444333210
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. .-....+++.+||++|+ +++|.++|.++++
T Consensus 228 ~~-------------------------~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 228 PK-------------------------DPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred cc-------------------------ccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00 00112368899999999 9999999998753
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-15 Score=117.94 Aligned_cols=126 Identities=19% Similarity=0.219 Sum_probs=77.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHH---
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLD--- 134 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~--- 134 (267)
.+|+++|.+|+|||||+|.|++......... ..+.+..........++ ..+.++||||..+... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~-~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS-ASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC-CCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 3799999999999999999998764221110 11112211111111223 5799999999876421 111
Q ss_pred -hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH
Q 024474 135 -EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 197 (267)
Q Consensus 135 -~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 197 (267)
....+.|++|+|+|+...........+++.+++.. ..-.++++|+|+.|.......++.
T Consensus 78 ~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~----~~~~~~ivv~T~~d~l~~~~~~~~ 137 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE----KVLDHTIVLFTRGDDLEGGTLEDY 137 (196)
T ss_pred HhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh----HhHhcEEEEEECccccCCCcHHHH
Confidence 12357899999999887433444555555555432 123578999999997765544443
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-15 Score=126.21 Aligned_cols=171 Identities=20% Similarity=0.278 Sum_probs=118.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--cccce-ee--ee------ccccceeEeecccCCCccccEEEEeCCCCCCchh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT-VT--SM------EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~~-~~--~~------~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
+-++|+|+.+...|||||+..|+.+. |.... +. -+ ...+-+...+...+.++.++++++|||||.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45689999999999999999998643 21111 00 01 1113334444455566778999999999999999
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
..++.+.-.|++++++|+.++ .+.+..-.+...+. .+.+.|||+||+|...+++.+.+.+.+. .+..+...
T Consensus 84 EVERvl~MVDgvlLlVDA~EG--pMPQTrFVlkKAl~------~gL~PIVVvNKiDrp~Arp~~Vvd~vfD-Lf~~L~A~ 154 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG--PMPQTRFVLKKALA------LGLKPIVVINKIDRPDARPDEVVDEVFD-LFVELGAT 154 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC--CCCchhhhHHHHHH------cCCCcEEEEeCCCCCCCCHHHHHHHHHH-HHHHhCCC
Confidence 999999999999999999986 25555555555554 5677799999999988766544443333 33332211
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccC----------c-chhHHHHHHhhcCC
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----------E-ISQVEQFIREQVKP 267 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----------~-i~~l~~~l~~~~~p 267 (267)
.. ....+++-.||+.| + +..|++.|.+|+++
T Consensus 155 de-------------------------QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 155 DE-------------------------QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred hh-------------------------hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 11 22335666788765 2 88999999999875
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-16 Score=117.55 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=118.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++++++|..|.||||++++...+.|...+..+.+.. ..-.....+...+++..|||+|++.+......|+-+..+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~---~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qc 85 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVE---VHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQC 85 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeE---EeeeeeecccCcEEEEeeecccceeecccccccEEecce
Confidence 46799999999999999999999998865554444221 111111112234799999999999999999999989999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
.+++||++.. -.+.....|-+++.+.+ .++|+++++||.|.......
T Consensus 86 AiimFdVtsr-~t~~n~~rwhrd~~rv~----~NiPiv~cGNKvDi~~r~~k---------------------------- 132 (216)
T KOG0096|consen 86 AIIMFDVTSR-FTYKNVPRWHRDLVRVR----ENIPIVLCGNKVDIKARKVK---------------------------- 132 (216)
T ss_pred eEEEeeeeeh-hhhhcchHHHHHHHHHh----cCCCeeeeccceeccccccc----------------------------
Confidence 9999999876 56788889999888754 67999999999997643211
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...|-. ..+..+++.||++.- .+.=+-||..++
T Consensus 133 -------~k~v~~~r-kknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 133 -------AKPVSFHR-KKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred -------cccceeee-cccceeEEeecccccccccchHHHhhhh
Confidence 00111111 457789999999887 887788887654
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=140.25 Aligned_cols=135 Identities=21% Similarity=0.246 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--CCcccc-eee------ee----ccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-TVT------SM----EPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-~~~------~~----~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+++|++|+|||||+++|+. +..... .+. +. ...+.+...........+..++++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3456999999999999999999973 111000 000 00 0001111111111222346899999999998
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
|.......++.+|++|+|+|+..+ .......+...+. ..++|+++++||+|+..+. .....+.+++.+
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g---~~~qt~~~~~~~~-----~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l 155 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGG---VEPQSETVWRQAD-----KYKVPRIAFVNKMDRTGAD-FYRVVEQIKDRL 155 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCC---cchhhHHHHHHHH-----HcCCCEEEEEECCCCCCCC-HHHHHHHHHHHh
Confidence 877788889999999999999876 2222222333332 2678999999999998644 334444444433
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-14 Score=125.01 Aligned_cols=114 Identities=18% Similarity=0.304 Sum_probs=72.5
Q ss_pred ccEEEEeCCCCCCc-----hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 116 KPVHLVDVPGHSRL-----RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 116 ~~~~l~DtpG~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
..+.++||||.... .......+..+|+|+||+|+... .......+.+.+... ..+.|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~---~s~~DeeIlk~Lkk~---~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL---KSISDEEVREAILAV---GQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC---CChhHHHHHHHHHhc---CCCCCEEEEEEcccCCC
Confidence 46889999998642 22344578999999999999874 112222333433321 12359999999999864
Q ss_pred CCC--HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 191 AHT--KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 191 ~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
... .+.+.+.+...+... ......++++||++|. ++.|++.|.++
T Consensus 304 reeddkE~Lle~V~~~L~q~-----------------------------~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKG-----------------------------CITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cccchHHHHHHHHHHHHHhc-----------------------------CCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 322 333333333222210 0123368999999999 99999999875
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-15 Score=129.09 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..+|+++|+.|+|||||+-.|+...++++..... ..+.++ ..+....+...++||+...+-+.....-++++|
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl----~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL----PRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccC----CccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcC
Confidence 456799999999999999999999998765432222 222222 222333467899999877776677788899999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 194 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 194 (267)
++.+||+.++. .+++.+...+..++++..-...++|||+|+||+|.......
T Consensus 82 vi~lvyavd~~-~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 82 VICLVYAVDDE-STVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred EEEEEEecCCh-HHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 99999999986 56766654444444433223478999999999999766543
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=120.88 Aligned_cols=135 Identities=14% Similarity=0.276 Sum_probs=81.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceee------eeccccceeEe--ecccCCCccccEEEEeCCCCCCchhh---
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT------SMEPNEDTFVL--HSESTKGKIKPVHLVDVPGHSRLRPK--- 132 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~--- 132 (267)
.++|+++|.+|+|||||+|+|++..+...... ...++ ..... .....++..+.+++|||||+.+....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T-~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKT-VEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCc-eEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 46899999999999999999998875332110 01111 11111 11122455578999999997654221
Q ss_pred H-----------H------------hhhc--cCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 133 L-----------D------------EFLP--QAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 133 ~-----------~------------~~~~--~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
+ . ..+. ++|+++|+++.+.. .+... ...+..+ . ..+|+++|+||+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~--~l~~~D~~~lk~l-~------~~v~vi~VinK~ 153 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH--GLKPLDIEFMKRL-S------KRVNIIPVIAKA 153 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC--CCCHHHHHHHHHH-h------ccCCEEEEEECC
Confidence 1 0 1111 47889999998752 23333 2223322 2 358999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 024474 187 DKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 187 Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
|+..........+.+.+.+...
T Consensus 154 D~l~~~e~~~~k~~i~~~l~~~ 175 (276)
T cd01850 154 DTLTPEELKEFKQRIMEDIEEH 175 (276)
T ss_pred CcCCHHHHHHHHHHHHHHHHHc
Confidence 9976444445555555555544
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.6e-14 Score=114.32 Aligned_cols=96 Identities=21% Similarity=0.215 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-------hhHHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-------PKLDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-------~~~~~~ 136 (267)
...++++|+|++|||||+++|++... .+.+++.++.+.. ......++..+++.|+||.-.-. ...-..
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~V--PG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPV--PGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccc--cceEeecCceEEEEcCcccccCcccCCCCcceeeee
Confidence 35899999999999999999998653 2333433322211 12224455789999999965322 223456
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHH
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLY 164 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~ 164 (267)
.+.||++++|+|+.......+.+...++
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe 165 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELE 165 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHH
Confidence 7899999999999875222333444333
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6e-14 Score=113.32 Aligned_cols=138 Identities=20% Similarity=0.357 Sum_probs=92.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-------chhhH
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-------LRPKL 133 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-------~~~~~ 133 (267)
.....+++++|..|+|||||+|+|..++..... .....+.........+++ -.+.+|||||.++ ++...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS--KVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee--ecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHH
Confidence 456778999999999999999999976543222 121111111122223344 3689999999876 56667
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC---------CCHHHHHHHHHHH
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---------HTKEFIRKQMEKE 204 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~---------~~~~~~~~~l~~~ 204 (267)
..++...|.+++++++.++ .+..-..++.++.... .+.|+++++|.+|.... .....+++.+++.
T Consensus 112 ~d~l~~~DLvL~l~~~~dr--aL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDR--ALGTDEDFLRDVIILG----LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred HHHhhhccEEEEeccCCCc--cccCCHHHHHHHHHhc----cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 7889999999999999885 2444455566666532 45899999999997644 2234455666655
Q ss_pred HHHH
Q 024474 205 IDKL 208 (267)
Q Consensus 205 ~~~~ 208 (267)
.+.+
T Consensus 186 ~~~~ 189 (296)
T COG3596 186 AEAL 189 (296)
T ss_pred HHHH
Confidence 5544
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=135.98 Aligned_cols=174 Identities=19% Similarity=0.188 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC-------------CccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 75 SGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-------------GKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 75 ~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++||||+.+|.+..........+....+.+.++..... .+.-.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 46999999999887655443333333333333221110 01124899999999999888888888999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-------HHHHHHHHHHHHHHHHhh---
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-------KEFIRKQMEKEIDKLRAS--- 211 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-------~~~~~~~l~~~~~~~~~~--- 211 (267)
++++|+|++++ +..........+.. .++|+++|+||+|+..... ...+..+.++.++.+...
T Consensus 552 ivlLVVDa~~G---i~~qT~e~I~~lk~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEG---FKPQTIEAINILRQ-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECccc---CCHhHHHHHHHHHH-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999874 12222222223332 5689999999999964321 011111111111111111
Q ss_pred -hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 212 -RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...+...+..... ....++....+.++++||+||+ |++|.++|..
T Consensus 624 v~~~L~~~G~~~e~-------~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 624 LIGKLYELGFDADR-------FDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HhhHHHhcCcchhh-------hhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 0011111111000 0112334678899999999999 9999999864
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=117.45 Aligned_cols=138 Identities=22% Similarity=0.261 Sum_probs=75.9
Q ss_pred cEEEEeCCCCCCc---hhhHHh---hhcc--CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 117 PVHLVDVPGHSRL---RPKLDE---FLPQ--AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 117 ~~~l~DtpG~~~~---~~~~~~---~~~~--~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+|||||+.++ +..... ++.. ++++++|+|++...+.......++...... ...++|+++|+||+|+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~---~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ---LRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH---HHcCCCEEEEEEhHhh
Confidence 6899999998663 333333 2333 899999999976422222222222221111 0267899999999999
Q ss_pred CCCCCHHHHHHHHHH---HHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 189 VTAHTKEFIRKQMEK---EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 189 ~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
......+...+.+.. .+..+....... ......+ .-...+.....+++++||++|+ +++|.+||.++
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--~~~~~~~-------~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQ--GLLSLEL-------LRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchH--HHHHHHH-------HHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 876555444443331 111111100000 0000000 0001111223578999999999 99999999998
Q ss_pred cC
Q 024474 265 VK 266 (267)
Q Consensus 265 ~~ 266 (267)
++
T Consensus 246 l~ 247 (253)
T PRK13768 246 FC 247 (253)
T ss_pred cC
Confidence 74
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=119.04 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~~~~~ 138 (267)
-|.++|.||+|||||++.+...+. .+..++.|+-.-..-.+.+. ..-.+.+-|.||.-+-.+ ..-+++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 578999999999999999988653 33333333222222222221 223699999999764322 3556788
Q ss_pred cCCEEEEEEeCCCCC--CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 139 QAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
++.++++|+|++... +-.+.......++.... ..-.++|.++|+||+|+..+
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~-~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS-PKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhh-HHhccCceEEEEeccCCCcC
Confidence 999999999998641 12333333333332221 12368899999999996543
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-14 Score=118.69 Aligned_cols=162 Identities=22% Similarity=0.211 Sum_probs=97.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccce--------------------ee----eeccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VT----SMEPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~--------------------~~----~~~~~~~~~~~~~~~~~~~~ 115 (267)
.+..+++++|+.++|||||+-+|+.. .++... +. +-...+.+.......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 56679999999999999999998542 111100 00 00111223333333344455
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC--Cc---hHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PN---CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+.++++|+||+.+|-.....-..+||+.|+|+|+..++ .. .....+.+.-.... .-..+||++||+|+..
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKMD~v~ 159 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKMDLVS 159 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcccccc
Confidence 68999999999999888888889999999999998751 01 11122222111111 2345899999999986
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc
Q 024474 191 AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 253 (267)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 253 (267)
-. ++..+++...+..+..... |. ..++.|+++||.+|+
T Consensus 160 wd--e~rf~ei~~~v~~l~k~~G---------------------~~--~~~v~FIPiSg~~G~ 197 (428)
T COG5256 160 WD--EERFEEIVSEVSKLLKMVG---------------------YN--PKDVPFIPISGFKGD 197 (428)
T ss_pred cC--HHHHHHHHHHHHHHHHHcC---------------------CC--ccCCeEEecccccCC
Confidence 32 2222333333333221111 11 236789999999998
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=115.80 Aligned_cols=193 Identities=19% Similarity=0.217 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc---eeeee
Q 024474 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG---TVTSM 97 (267)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~---~~~~~ 97 (267)
+..++++++.+++..+. +...+..+.. .......|+|+|++|+|||||++.+...-...+ .+...
T Consensus 3 ~~~~~~~~~~~e~~~~~------~~~~~~~~~~------~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~ 70 (300)
T TIGR00750 3 RRALARAITLVENRHPE------AKQLLDRIMP------YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAV 70 (300)
T ss_pred HHHHHHHHHHHhCCChH------HHHHHHhCCc------ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 45789999999988765 2222333221 135678899999999999999998754210000 00001
Q ss_pred cccc---------------------ceeEeecc-----------------cCCCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 98 EPNE---------------------DTFVLHSE-----------------STKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 98 ~~~~---------------------~~~~~~~~-----------------~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
++.. ..+..... ..+..++.+.|+||+|.... ....+..
T Consensus 71 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~---e~~i~~~ 147 (300)
T TIGR00750 71 DPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQS---EVDIANM 147 (300)
T ss_pred CCCCCcchhhhcccchhhhhcccCCCceeeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchh---hhHHHHh
Confidence 1000 00000000 01223578999999996532 2235667
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
+|.++++.+...+ .++......+ .++|.++|+||+|+............+...+..+. .
T Consensus 148 aD~i~vv~~~~~~----~el~~~~~~l--------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~-------~-- 206 (300)
T TIGR00750 148 ADTFVVVTIPGTG----DDLQGIKAGL--------MEIADIYVVNKADGEGATNVTIARLMLALALEEIR-------R-- 206 (300)
T ss_pred hceEEEEecCCcc----HHHHHHHHHH--------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhcc-------c--
Confidence 8888888654433 2332222222 34677999999999755432222222221111110 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
... ....+++++||++|+ +++|.++|.++.
T Consensus 207 ---------~~~-------~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 207 ---------RED-------GWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred ---------ccc-------CCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 000 011258999999999 999999998763
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=112.86 Aligned_cols=192 Identities=20% Similarity=0.266 Sum_probs=114.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc---CCcccceeeeeccccceeEeecc----------------------------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD---GSTHQGTVTSMEPNEDTFVLHSE---------------------------- 109 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~---~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 109 (267)
..+...|+++|..|+||||++.+|.. .+..+.++...+|-....++...
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 45667899999999999999999854 22222333333332111111000
Q ss_pred -----------c-C--CCccccEEEEeCCCCCCch------hhHHhhh--ccCCEEEEEEeCCCCCC--chHHHHHHHHH
Q 024474 110 -----------S-T--KGKIKPVHLVDVPGHSRLR------PKLDEFL--PQAAGIVFVVDALEFLP--NCSAASEYLYD 165 (267)
Q Consensus 110 -----------~-~--~~~~~~~~l~DtpG~~~~~------~~~~~~~--~~~d~ii~v~d~~~~~~--~~~~~~~~l~~ 165 (267)
. + ........++||||+.+.- ..+-..+ ...-+++||+|.....+ .+-.---+...
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 0 0 1122468899999986521 1111222 23458899999765322 23222333344
Q ss_pred HHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEE
Q 024474 166 ILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVA 245 (267)
Q Consensus 166 ~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (267)
++- +...|.|+|.||+|+.+..-..++...++..-+.+....+..-. .-.....+.++++..+++.+
T Consensus 176 ily-----ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s--------~l~~SmSL~leeFY~~lrtv 242 (366)
T KOG1532|consen 176 ILY-----KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMS--------NLTRSMSLMLEEFYRSLRTV 242 (366)
T ss_pred HHH-----hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhH--------HhhhhHHHHHHHHHhhCceE
Confidence 443 47899999999999998877777777766655555431111000 00112234566778889999
Q ss_pred EeeeccCc-chhHHHHHHhhc
Q 024474 246 EASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 246 ~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+||.+|+ +++++..+.+.+
T Consensus 243 ~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 243 GVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred EEecccCCcHHHHHHHHHHHH
Confidence 99999999 999988876643
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=131.54 Aligned_cols=125 Identities=23% Similarity=0.254 Sum_probs=77.6
Q ss_pred EcCCCCCHHHHHHHHHcCCcc--c-c------eeeeecc----ccceeEeecccCCCccccEEEEeCCCCCCchhhHHhh
Q 024474 70 AGLSGSGKTVLFYQLRDGSTH--Q-G------TVTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEF 136 (267)
Q Consensus 70 ~G~~~~GKSsLl~~l~~~~~~--~-~------~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 136 (267)
+|++|+|||||+++|+...-. . . ....... .+.+...........++.+++|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999643210 0 0 0000000 0111111111222344789999999999888888899
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
++.+|++++|+|++.+ ... .....+..+.. .++|+++|+||+|+.... .....+.+++
T Consensus 81 l~~aD~vllvvd~~~~-~~~-~~~~~~~~~~~------~~~p~iiv~NK~D~~~~~-~~~~~~~l~~ 138 (668)
T PRK12740 81 LRVLDGAVVVVCAVGG-VEP-QTETVWRQAEK------YGVPRIIFVNKMDRAGAD-FFRVLAQLQE 138 (668)
T ss_pred HHHhCeEEEEEeCCCC-cCH-HHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 9999999999999875 222 22222333222 578999999999987643 3334444444
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=127.24 Aligned_cols=137 Identities=22% Similarity=0.333 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--ccc---c--eeee-----------eccccceeEeecccCCCccccEEEEeC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ---G--TVTS-----------MEPNEDTFVLHSESTKGKIKPVHLVDV 123 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~---~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt 123 (267)
.+.++|+++|+.++|||||+.+|+... ... + ...+ +......+.+ ..++..+.++++||
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~---~~~~~~~~i~liDt 94 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVH---EYEGKEYLINLIDT 94 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEE---EecCCcEEEEEEcC
Confidence 456789999999999999999997532 100 0 0000 1000111111 11334578999999
Q ss_pred CCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC---CCHHHHHHH
Q 024474 124 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRKQ 200 (267)
Q Consensus 124 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~---~~~~~~~~~ 200 (267)
||+.+|.......++.+|++|+|+|+..+. .......+..... .+.|+++++||+|+... ...+++.+.
T Consensus 95 PG~~df~~~~~~~l~~~D~avlVvda~~g~--~~~t~~~~~~~~~------~~~~~iv~iNK~D~~~~~~~~~~~~~~~~ 166 (731)
T PRK07560 95 PGHVDFGGDVTRAMRAVDGAIVVVDAVEGV--MPQTETVLRQALR------ERVKPVLFINKVDRLIKELKLTPQEMQQR 166 (731)
T ss_pred CCccChHHHHHHHHHhcCEEEEEEECCCCC--CccHHHHHHHHHH------cCCCeEEEEECchhhcccccCCHHHHHHH
Confidence 999999888999999999999999998752 1222233333232 45688999999998643 245566666
Q ss_pred HHHHHHHHH
Q 024474 201 MEKEIDKLR 209 (267)
Q Consensus 201 l~~~~~~~~ 209 (267)
+.+.+..+.
T Consensus 167 ~~~~~~e~~ 175 (731)
T PRK07560 167 LLKIIKDVN 175 (731)
T ss_pred HHHHHHHHH
Confidence 665555444
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=119.55 Aligned_cols=86 Identities=29% Similarity=0.362 Sum_probs=56.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeecc----------------cCC-CccccEEEEeCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSE----------------STK-GKIKPVHLVDVPG 125 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~----------------~~~-~~~~~~~l~DtpG 125 (267)
++|+++|.||+|||||+|+|++.....+. -+++.|+.+....... ..+ .....+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999987653211 1233444333221110 011 1225789999999
Q ss_pred CCC----chhhHHh---hhccCCEEEEEEeCC
Q 024474 126 HSR----LRPKLDE---FLPQAAGIVFVVDAL 150 (267)
Q Consensus 126 ~~~----~~~~~~~---~~~~~d~ii~v~d~~ 150 (267)
... ...+... .++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 642 2333334 488999999999997
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.7e-13 Score=110.19 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=73.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHH------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD------ 134 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~------ 134 (267)
..+..+|+++|.+|+||||++|+|++..... ++...+.+.+........+ +..+++|||||..+......
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~--vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIAT--VSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCccc--ccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHH
Confidence 4577899999999999999999999876321 1111111111111111123 36899999999886532222
Q ss_pred -hhh--ccCCEEEEEEeCCC--CCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 135 -EFL--PQAAGIVFVVDALE--FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 135 -~~~--~~~d~ii~v~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
.++ ...|+++||...+. .......+.+.+.+++.. ..-.+.|+|+|+.|..+.
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~----~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK----DIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh----hhhccEEEEEECCccCCC
Confidence 122 25899999965543 211223344444444432 123468999999997643
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=111.56 Aligned_cols=209 Identities=21% Similarity=0.257 Sum_probs=130.9
Q ss_pred cCCcchhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 8 KLPEGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 8 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++++..+..+..-|..++|+++.+++..+....+ +..++..+.. ...+...|.|.|.||+|||||+..|...
T Consensus 3 ~~~~l~e~l~~GdrrAlARaITlvEs~~~~h~~~--a~~ll~~l~p------~tG~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 3 TVDELIERLLAGDRRALARAITLVESRRPDHRAL--ARELLRALYP------RTGNAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHhcCCchhhhH--HHHHHHHHhh------cCCCCcEEEecCCCCCchHHHHHHHHHH
Confidence 3455567777778999999999999998875543 3344444332 1456679999999999999999988543
Q ss_pred Ccccce---eeeeccc----ccee-----------------Eeecc-----------------cCCCccccEEEEeCCCC
Q 024474 88 STHQGT---VTSMEPN----EDTF-----------------VLHSE-----------------STKGKIKPVHLVDVPGH 126 (267)
Q Consensus 88 ~~~~~~---~~~~~~~----~~~~-----------------~~~~~-----------------~~~~~~~~~~l~DtpG~ 126 (267)
-..++. +-.++|+ ++.+ ..+.. .++..++.+.|+.|.|.
T Consensus 75 l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGv 154 (323)
T COG1703 75 LRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGV 154 (323)
T ss_pred HHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 222211 2222221 1110 00000 01334567889999886
Q ss_pred CCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 024474 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 127 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~ 206 (267)
..-.. ....-+|.+++|.-+..+ +..+..+.-+.++-. ++|+||.|+..+ +.....+...++
T Consensus 155 GQsev---~I~~~aDt~~~v~~pg~G-D~~Q~iK~GimEiaD-----------i~vINKaD~~~A---~~a~r~l~~al~ 216 (323)
T COG1703 155 GQSEV---DIANMADTFLVVMIPGAG-DDLQGIKAGIMEIAD-----------IIVINKADRKGA---EKAARELRSALD 216 (323)
T ss_pred Ccchh---HHhhhcceEEEEecCCCC-cHHHHHHhhhhhhhh-----------eeeEeccChhhH---HHHHHHHHHHHH
Confidence 64322 233458999999887776 678888888877654 899999995433 233333333333
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..... +.+..-.-+++.+||.+|+ +++|.+.+.+|.
T Consensus 217 ~~~~~-----------------------~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 217 LLREV-----------------------WRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred hhccc-----------------------ccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 22100 1111223368999999999 999999998874
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=129.90 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=96.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc--cc---ce-e-e-----------eeccccceeEeecc---------cCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST--HQ---GT-V-T-----------SMEPNEDTFVLHSE---------STKG 113 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~---~~-~-~-----------~~~~~~~~~~~~~~---------~~~~ 113 (267)
..+.++|+|+|+.++|||||+++|+...- .. +. . . ++......+.+... ...+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 34667999999999999999999975321 00 00 0 0 11111111111100 0122
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC--
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA-- 191 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~-- 191 (267)
..+.++++||||+.+|.......++.+|++|+|+|+..+-. ......+..... .++|+++++||+|+...
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~--~~t~~~~~~~~~------~~~p~i~~iNK~D~~~~~~ 167 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--VQTETVLRQALG------ERIRPVLTVNKMDRCFLEL 167 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc--ccHHHHHHHHHH------CCCCEEEEEECCcccchhh
Confidence 35688999999999999999999999999999999988621 222333333332 67899999999998632
Q ss_pred -CCHHHHHHHHHHHHHHHHhhhhc
Q 024474 192 -HTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 192 -~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.+.++....+.+.+++++...+.
T Consensus 168 ~~~~~~~~~~~~~vi~~in~~~~~ 191 (843)
T PLN00116 168 QVDGEEAYQTFSRVIENANVIMAT 191 (843)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHh
Confidence 24566777788888887754444
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=123.40 Aligned_cols=189 Identities=17% Similarity=0.269 Sum_probs=117.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC---------CC----ccccEEEEeCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST---------KG----KIKPVHLVDVPGHS 127 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~l~DtpG~~ 127 (267)
.-+.+-++|+|+..+|||-|+..+.+.++..+....+..+.+...++...+ +. +.--+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 346678999999999999999999987765554444333333222222211 11 11237899999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC------CCH-HHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA------HTK-EFIRKQ 200 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~------~~~-~~~~~~ 200 (267)
.|..+..+....||.+|+|+|+..+ ++...-.-..+++ ..++|+||.+||+|..-. .+. +.+.++
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhG---lepqtiESi~lLR-----~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ 623 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHG---LEPQTIESINLLR-----MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQ 623 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhcc---CCcchhHHHHHHH-----hcCCCeEEeehhhhhhcccccCCCchHHHHHHHh
Confidence 9999999999999999999999876 3322222223333 278999999999996422 111 111111
Q ss_pred HHHHHHHH----HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 201 MEKEIDKL----RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 201 l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
-....+.+ ......+...+.+..++.. -.+....+.++|+||.+|+ |.+|+-||.+.
T Consensus 624 ~k~v~~EF~~R~~~ii~efaEQgLN~~Lyyk-------Nk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 624 KKDVQNEFKERLNNIIVEFAEQGLNAELYYK-------NKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccchhheee-------cccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 11111211 1122222233333333222 1233456788999999999 99999998765
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=111.16 Aligned_cols=172 Identities=17% Similarity=0.209 Sum_probs=104.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC----cccceeeeeccccceeEe-------ecccCCCccccEEEEeCCCCCCch
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS----THQGTVTSMEPNEDTFVL-------HSESTKGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~DtpG~~~~~ 130 (267)
+...++.++|+..+|||||..+|..-. |+....++....+-+..+ ......+....+.++|+||+....
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345799999999999999999986422 111111111111111111 111224556788999999987655
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
........-.|..++|+|+..+.+.-....-.+.+++ ....+||+||+|...+.......+.+.+.+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--------c~klvvvinkid~lpE~qr~ski~k~~kk~~K--- 153 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--------CKKLVVVINKIDVLPENQRASKIEKSAKKVRK--- 153 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh--------ccceEEEEeccccccchhhhhHHHHHHHHHHH---
Confidence 4444455567999999999876332222222333332 34578999999987765443333333322221
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC----c-chhHHHHHHhhc
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----E-ISQVEQFIREQV 265 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----~-i~~l~~~l~~~~ 265 (267)
...+ ...+++.+++++||..| + |.+|.+.|.+.+
T Consensus 154 tLe~---------------------t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 154 TLES---------------------TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHHh---------------------cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 1111 11266789999999999 6 999999998763
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-15 Score=114.95 Aligned_cols=164 Identities=18% Similarity=0.240 Sum_probs=118.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCC-ccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG-KIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+++.|+|.-|+|||+++.+.....+...+..++ +.++.......+. ..+++++||.+|+++|..+..-|++.+++.
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtI---gvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATI---GVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHH---hHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 489999999999999999998877654444444 3344444444433 346899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCC-CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVV-KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
.+|||.+.. ..++....|..++.....+. ....|+++..||||+......+ ....+.+
T Consensus 103 ~iVfdvt~s-~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~-~~~~~d~------------------- 161 (229)
T KOG4423|consen 103 FIVFDVTRS-LTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE-ATRQFDN------------------- 161 (229)
T ss_pred EEEEEcccc-ccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhh-hHHHHHH-------------------
Confidence 999999986 67889999998887654432 3567789999999986432211 1111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
|....+-...+++|+|.+. +++..+.|.++
T Consensus 162 ------------f~kengf~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 162 ------------FKKENGFEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred ------------HHhccCccceeeeccccccChhHHHHHHHHH
Confidence 1111333457899999988 88888777765
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=129.37 Aligned_cols=140 Identities=21% Similarity=0.261 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cc---cc--eeeeecc----ccceeEee----cccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--TH---QG--TVTSMEP----NEDTFVLH----SESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~---~~--~~~~~~~----~~~~~~~~----~~~~~~~~~~~~l~DtpG~ 126 (267)
...++|+++|+.++|||||+++|+... .. .+ ...+..+ .+.+.... ....++..+.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456799999999999999999997421 00 00 0000100 00011100 0113455678999999999
Q ss_pred CCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC---CCHHHHHHHHHH
Q 024474 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRKQMEK 203 (267)
Q Consensus 127 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~---~~~~~~~~~l~~ 203 (267)
.+|.......++.+|++|+|+|+.++.. ......+..... .+.|+++|+||+|.... ...+++++.+..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~--~~t~~~~~~~~~------~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~ 168 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVM--PQTETVLRQALK------ENVKPVLFINKVDRLINELKLTPQELQERFIK 168 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCC--ccHHHHHHHHHH------cCCCEEEEEEChhcccchhcCCHHHHHHHHhh
Confidence 9998888999999999999999987521 111222222222 56788999999998754 245566666665
Q ss_pred HHHHHH
Q 024474 204 EIDKLR 209 (267)
Q Consensus 204 ~~~~~~ 209 (267)
.+..+.
T Consensus 169 ~~~~v~ 174 (720)
T TIGR00490 169 IITEVN 174 (720)
T ss_pred hhHHHH
Confidence 554443
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=105.86 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
..+..|+++|++|+|||||++.+.+... ....... .+++... .....++.++||||.. .......+.+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~-~~~~~~~---~g~i~i~----~~~~~~i~~vDtPg~~---~~~l~~ak~aD 105 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYT-KQNISDI---KGPITVV----TGKKRRLTFIECPNDI---NAMIDIAKVAD 105 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcc-cCccccc---cccEEEE----ecCCceEEEEeCCchH---HHHHHHHHhcC
Confidence 5667899999999999999999987521 1111111 1212111 1233578999999853 23334567899
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcE-EEEEecCCCCCC
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCNKTDKVTA 191 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pv-ivv~nK~Dl~~~ 191 (267)
++++|+|++.+ .......+...+.. .+.|. ++|+||+|+...
T Consensus 106 vVllviDa~~~---~~~~~~~i~~~l~~-----~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 106 LVLLLIDASFG---FEMETFEFLNILQV-----HGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred EEEEEEecCcC---CCHHHHHHHHHHHH-----cCCCeEEEEEeccccCCc
Confidence 99999999875 22222333333332 45674 559999998743
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=128.04 Aligned_cols=145 Identities=19% Similarity=0.262 Sum_probs=95.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cc---cee--e-----------eeccccceeEeecc---cCCCccccEEE
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQ---GTV--T-----------SMEPNEDTFVLHSE---STKGKIKPVHL 120 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~---~~~--~-----------~~~~~~~~~~~~~~---~~~~~~~~~~l 120 (267)
.+.++|+++|+.++|||||+++|+...- .. +.. . ++......+.+... ..++..+.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4566999999999999999999976321 00 000 0 00000011111100 00122467999
Q ss_pred EeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---CCCHHHH
Q 024474 121 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFI 197 (267)
Q Consensus 121 ~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~~~~~~~ 197 (267)
+||||+.+|.......++.+|++|+|+|+.++.. ......+..+.. .++|+++++||+|+.- ..++++.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~--~~t~~~~~~~~~------~~~p~iv~iNK~D~~~~~~~~~~~~~ 168 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC--VQTETVLRQALQ------ERIRPVLFINKVDRAILELQLDPEEI 168 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC--ccHHHHHHHHHH------cCCCEEEEEEChhhhhhhcCCCHHHH
Confidence 9999999998888899999999999999988522 222233333332 5689999999999863 3467777
Q ss_pred HHHHHHHHHHHHhhhhc
Q 024474 198 RKQMEKEIDKLRASRSA 214 (267)
Q Consensus 198 ~~~l~~~~~~~~~~~~~ 214 (267)
...+.+.+++++.....
T Consensus 169 ~~~~~~ii~~in~~l~~ 185 (836)
T PTZ00416 169 YQNFVKTIENVNVIIAT 185 (836)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888887765543
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=96.62 Aligned_cols=138 Identities=19% Similarity=0.226 Sum_probs=92.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC----CchhhHHhhhccC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS----RLRPKLDEFLPQA 140 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~----~~~~~~~~~~~~~ 140 (267)
.|++++|..|+|||||.++|.+.......+.. . .++.. -.+||||-- .+..-.......+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQA-------v-----e~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~da 65 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQA-------V-----EFNDK----GDIDTPGEYFEHPRWYHALITTLQDA 65 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccce-------e-----eccCc----cccCCchhhhhhhHHHHHHHHHhhcc
Confidence 48999999999999999999987532211111 1 11111 258999933 2222233445789
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|-.++++.+.+..... .....|+|-|++|+||....+.+..++.+.+
T Consensus 66 dvi~~v~~and~~s~f~p~f~-----------~~~~k~vIgvVTK~DLaed~dI~~~~~~L~e----------------- 117 (148)
T COG4917 66 DVIIYVHAANDPESRFPPGFL-----------DIGVKKVIGVVTKADLAEDADISLVKRWLRE----------------- 117 (148)
T ss_pred ceeeeeecccCccccCCcccc-----------cccccceEEEEecccccchHhHHHHHHHHHH-----------------
Confidence 999999998887443332211 1255679999999999865555555544443
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.+.-++|++|+.+.. +++|+++|...
T Consensus 118 ------------------aGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 118 ------------------AGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred ------------------cCCcceEEEeccCcccHHHHHHHHHhh
Confidence 234468999999999 99999998753
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-14 Score=112.82 Aligned_cols=186 Identities=20% Similarity=0.263 Sum_probs=105.4
Q ss_pred HHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---cceeeeeccc
Q 024474 24 LNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTVTSMEPN 100 (267)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~~~~~~~ 100 (267)
++++++.+++..+. +..++..+.. ...+.+.|.|.|+||+|||||++.|...-.. .-.+-.++|+
T Consensus 1 LAraITlvE~~~~~------~~~ll~~l~~------~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS 68 (266)
T PF03308_consen 1 LARAITLVENRRPE------ARELLKRLYP------HTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS 68 (266)
T ss_dssp HHHHHHHHH-SSHH------HHHHHHHHGG------GTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG
T ss_pred CHHHHHHHhCCCHH------HHHHHHHHHh------hcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC
Confidence 46888999988773 2333333321 1346789999999999999999988532111 1122223332
Q ss_pred c----ce-----------------eEeeccc-----------------CCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 101 E----DT-----------------FVLHSES-----------------TKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 101 ~----~~-----------------~~~~~~~-----------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
. +. |...... .+..++.+.|+.|.|...-.- ....-+|.
T Consensus 69 Sp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~ 145 (266)
T PF03308_consen 69 SPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADT 145 (266)
T ss_dssp GGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSE
T ss_pred CCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCe
Confidence 1 10 1100000 122346788899988654222 23456899
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|.-+..+ +.++.++.-+.++.. ++|+||.|+..+ +.....++..+.... .
T Consensus 146 ~v~v~~Pg~G-D~iQ~~KaGimEiaD-----------i~vVNKaD~~gA---~~~~~~l~~~l~l~~---~--------- 198 (266)
T PF03308_consen 146 VVLVLVPGLG-DEIQAIKAGIMEIAD-----------IFVVNKADRPGA---DRTVRDLRSMLHLLR---E--------- 198 (266)
T ss_dssp EEEEEESSTC-CCCCTB-TTHHHH-S-----------EEEEE--SHHHH---HHHHHHHHHHHHHCS---T---------
T ss_pred EEEEecCCCc-cHHHHHhhhhhhhcc-----------EEEEeCCChHHH---HHHHHHHHHHHhhcc---c---------
Confidence 9999999877 678888887777744 899999995432 222333333332110 0
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
... .-..+++.+||.+|+ +++|.+.|.+|
T Consensus 199 ------~~~-------~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 199 ------RED-------GWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp ------SCT-------SB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ------ccc-------CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 000 113479999999999 99999999886
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=110.54 Aligned_cols=135 Identities=20% Similarity=0.266 Sum_probs=95.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH--cCCcccceee-e-------------ec-cccceeEeecccCCCccccEEEEeCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR--DGSTHQGTVT-S-------------ME-PNEDTFVLHSESTKGKIKPVHLVDVPG 125 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~--~~~~~~~~~~-~-------------~~-~~~~~~~~~~~~~~~~~~~~~l~DtpG 125 (267)
+++..+|+-+|.+|||||..+|+ ++.+..+... . +. ..+-.........+..++.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 45589999999999999999874 3322111110 0 00 012223333334456668899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
|++|..-..+-+.-+|.+++|+|+..+ ++.....|.++.+. .++||+-++||.|... +.+-++..++++.+
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG---iE~qT~KLfeVcrl-----R~iPI~TFiNKlDR~~-rdP~ELLdEiE~~L 161 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG---IEPQTLKLFEVCRL-----RDIPIFTFINKLDREG-RDPLELLDEIEEEL 161 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC---ccHHHHHHHHHHhh-----cCCceEEEeecccccc-CChHHHHHHHHHHh
Confidence 999999888888899999999999987 66666667777664 8999999999999864 44555555555544
Q ss_pred H
Q 024474 206 D 206 (267)
Q Consensus 206 ~ 206 (267)
.
T Consensus 162 ~ 162 (528)
T COG4108 162 G 162 (528)
T ss_pred C
Confidence 3
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=101.79 Aligned_cols=124 Identities=11% Similarity=0.084 Sum_probs=75.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh---h-----
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---K----- 132 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~----- 132 (267)
.....+|+++|.+|+|||||+|+|++.... .+....+.+..........+ +..+++|||||..+... .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~--~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKA--ATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcchhhHHHHHHHH
Confidence 457789999999999999999999997632 12222222222222222223 35799999999886521 1
Q ss_pred --HHhhhc--cCCEEEEEEeCCCCC--CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 133 --LDEFLP--QAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 133 --~~~~~~--~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
...++. ..|+++||..++... .....+.+.+.+.+.. ..-.++++|.||+|...+.
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~----~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP----SIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh----hhHhCEEEEEeCCccCCCC
Confidence 223443 578899987665421 1122344444444331 1225699999999987554
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-12 Score=107.89 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=56.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeeccc-------CCC---ccccEEEEeCCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES-------TKG---KIKPVHLVDVPGHSR 128 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~l~DtpG~~~ 128 (267)
.....+|+++|.||+|||||+|+|++.....+ .-+|..|+.+...+.... .+. ....+.++||||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 35778999999999999999999987653211 112223333332222110 000 123689999999753
Q ss_pred ch----h---hHHhhhccCCEEEEEEeCC
Q 024474 129 LR----P---KLDEFLPQAAGIVFVVDAL 150 (267)
Q Consensus 129 ~~----~---~~~~~~~~~d~ii~v~d~~ 150 (267)
-. . ..-..++.+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 21 1 2334678899999999985
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=106.49 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=62.8
Q ss_pred cEEEEeCCCCCCchhhHHh------hhc--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 117 PVHLVDVPGHSRLRPKLDE------FLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~~~~~------~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.++|||||.++...+.. .+. ..-++++++|+....+........+...... .+.+.|.+.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~---~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM---LRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH---HHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH---hhCCCCEEEeeeccCc
Confidence 6899999999876544332 222 3458999999876423233333333332221 1267999999999999
Q ss_pred CCCCCHHHHHHHHH---HHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 189 VTAHTKEFIRKQME---KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 189 ~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.... .+...+.+. .....+......... .+... +++......++++|+++++ +++|...+.+.
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~-~i~~~-----------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNE-EIAEL-----------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHH-HHHHH-----------CCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHH-----------HhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 8744 332222221 110110000000000 00000 1111223379999999999 99999998875
Q ss_pred c
Q 024474 265 V 265 (267)
Q Consensus 265 ~ 265 (267)
+
T Consensus 236 ~ 236 (238)
T PF03029_consen 236 N 236 (238)
T ss_dssp H
T ss_pred h
Confidence 4
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=110.31 Aligned_cols=146 Identities=23% Similarity=0.318 Sum_probs=99.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceee-------------------eeccccceeEeecccCCCccccEEEEe
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT-------------------SMEPNEDTFVLHSESTKGKIKPVHLVD 122 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D 122 (267)
...++++++|+-++|||+|+..|..+..++.... ++..+..+... ....++.+.++++|
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l--~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVL--SDSKGKSYLMNILD 203 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEE--ecCcCceeeeeeec
Confidence 4567899999999999999999976543222110 11111111111 11256778899999
Q ss_pred CCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---CCCHHHHHH
Q 024474 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIRK 199 (267)
Q Consensus 123 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~~~~~~~~~ 199 (267)
|||+-+|.+.....++.+|++++|+|+.++ -.-.....+....+ .+.|+++|+||+|+.- ..++.....
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EG--VmlntEr~ikhaiq------~~~~i~vviNKiDRLilELkLPP~DAY~ 275 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEG--VMLNTERIIKHAIQ------NRLPIVVVINKVDRLILELKLPPMDAYY 275 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccC--ceeeHHHHHHHHHh------ccCcEEEEEehhHHHHHHhcCChHHHHH
Confidence 999999999999999999999999999986 22233444444443 6789999999999642 234555566
Q ss_pred HHHHHHHHHHhhhhcccc
Q 024474 200 QMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~ 217 (267)
.+.-.+..++...+..+.
T Consensus 276 KLrHii~~iN~~is~~s~ 293 (971)
T KOG0468|consen 276 KLRHIIDEINNLISTFSK 293 (971)
T ss_pred HHHHHHHHhcchhhhccc
Confidence 666666666655555544
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=105.17 Aligned_cols=112 Identities=19% Similarity=0.177 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--Ccccceeeeeccccce-eEeecccCCCccccEEEEeCCCCCCchhhHHhhh--
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDT-FVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFL-- 137 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~-- 137 (267)
...+|+|+|.+|+|||||+|.|.+- .-..+..+....++.. ..+.. .+.-.+.+||.||..........|+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~----p~~pnv~lWDlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH----PKFPNVTLWDLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-----SS-TTEEEEEE--GGGSS--HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC----CCCCCCeEEeCCCCCCCCCCHHHHHHH
Confidence 5569999999999999999999752 2111122111111111 11221 2223699999999765444444554
Q ss_pred ---ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 138 ---PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 138 ---~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
..-|.+|++.+ +. +....-++...++. .++|+.+|-||+|.
T Consensus 110 ~~~~~yD~fiii~s-~r----f~~ndv~La~~i~~-----~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 110 VKFYRYDFFIIISS-ER----FTENDVQLAKEIQR-----MGKKFYFVRTKVDS 153 (376)
T ss_dssp TTGGG-SEEEEEES-SS------HHHHHHHHHHHH-----TT-EEEEEE--HHH
T ss_pred ccccccCEEEEEeC-CC----CchhhHHHHHHHHH-----cCCcEEEEEecccc
Confidence 45687777644 33 44444444444442 78999999999995
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=98.67 Aligned_cols=123 Identities=18% Similarity=0.248 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------HHh---
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-------LDE--- 135 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-------~~~--- 135 (267)
+|+++|..|+||||++|.+++......... ..+.+..........++ ..+.++||||..+.... ...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~-~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSS-AKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TT-TSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccc-cCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 799999999999999999998775332211 11112222222223344 67999999997643221 111
Q ss_pred -hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH
Q 024474 136 -FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 195 (267)
Q Consensus 136 -~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 195 (267)
...+.|++|+|++............+++..++... .-..++||+|..|.......+
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~----~~k~~ivvfT~~d~~~~~~~~ 135 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE----IWKHTIVVFTHADELEDDSLE 135 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG----GGGGEEEEEEEGGGGTTTTHH
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH----HHhHhhHHhhhccccccccHH
Confidence 23568999999999865344556667777776532 224589999999877666543
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=103.08 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cccee------e--------------------eeccccceeEeecccCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTV------T--------------------SMEPNEDTFVLHSESTKG 113 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~~~~------~--------------------~~~~~~~~~~~~~~~~~~ 113 (267)
+...+++-+|...-|||||+-+|+.+.- .+... + .-..++-+..+....+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4556899999999999999999875421 00000 0 001122223333333344
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHH--HHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS--EYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
...+|.+.|||||+.|....-.-...||+.|+++|+..+ -+++.. .++..++ .=..+++.+||+||.+.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLL-------GIrhvvvAVNKmDLvdy 154 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLL-------GIRHVVVAVNKMDLVDY 154 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHh-------CCcEEEEEEeeeccccc
Confidence 456899999999999877777777889999999999875 233222 2333333 23458999999999876
Q ss_pred C
Q 024474 192 H 192 (267)
Q Consensus 192 ~ 192 (267)
.
T Consensus 155 ~ 155 (431)
T COG2895 155 S 155 (431)
T ss_pred C
Confidence 4
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-11 Score=101.93 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=61.5
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC---------CchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
.+.+.+||++|+...+..|.+++.++++++||+|+++.. +.+.+....+..++.+... .++|+++++||
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~--~~~pill~~NK 237 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF--ANTSIILFLNK 237 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc--cCCCEEEEccC
Confidence 467889999999999999999999999999999998741 3466777788888776543 68999999999
Q ss_pred CCCC
Q 024474 186 TDKV 189 (267)
Q Consensus 186 ~Dl~ 189 (267)
.|+.
T Consensus 238 ~D~f 241 (317)
T cd00066 238 KDLF 241 (317)
T ss_pred hHHH
Confidence 9965
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=114.08 Aligned_cols=122 Identities=23% Similarity=0.245 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--ccc-ceee------eecc----ccceeEeecccCCCc-cccEEEEeCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ-GTVT------SMEP----NEDTFVLHSESTKGK-IKPVHLVDVPGHS 127 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~-~~~~------~~~~----~~~~~~~~~~~~~~~-~~~~~l~DtpG~~ 127 (267)
.+.++|.|+|+.++|||||..+|+... ... +.+. ...+ .+-+..........+ .+.++++|||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 466799999999999999999986321 111 0110 0000 111222222222333 4799999999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
+|.....+.++-+|++++|+|+..+ .+.. ...+++.. +.++|.++++||+|.....
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveG---V~~QTEtv~rqa~------~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEG---VEPQTETVWRQAD------KYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCC---eeecHHHHHHHHh------hcCCCeEEEEECccccccC
Confidence 9999999999999999999999986 3333 33333333 3789999999999987654
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.4e-11 Score=93.47 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=61.6
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcE--EEEEecCCCCCC--
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV--LICCNKTDKVTA-- 191 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pv--ivv~nK~Dl~~~-- 191 (267)
....+++|.|..-.... ...+ +|.+|.|+|+.+. .... .... .++.. ++++||+|+.+.
T Consensus 92 ~D~iiIEt~G~~l~~~~-~~~l--~~~~i~vvD~~~~-~~~~--~~~~-----------~qi~~ad~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATF-SPEL--ADLTIFVIDVAAG-DKIP--RKGG-----------PGITRSDLLVINKIDLAPMVG 154 (199)
T ss_pred CCEEEEECCCCCccccc-chhh--hCcEEEEEEcchh-hhhh--hhhH-----------hHhhhccEEEEEhhhcccccc
Confidence 46678888884321111 1222 6889999999876 2211 1111 12223 899999999853
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 192 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+.. .+.+..+ ....+++++||++|+ +++|++||.+++.
T Consensus 155 ~~~~~~----~~~~~~~------------------------------~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ADLGVM----ERDAKKM------------------------------RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ccHHHH----HHHHHHh------------------------------CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 223222 2223222 224578999999999 9999999998864
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=106.34 Aligned_cols=160 Identities=24% Similarity=0.264 Sum_probs=100.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Cccc------------------ce--ee----eeccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQ------------------GT--VT----SMEPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~------------------~~--~~----~~~~~~~~~~~~~~~~~~~~ 115 (267)
.....++++|+.++|||||+-+|+.. .+.. .+ +. .-...+.+..+....++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 35678999999999999999887431 1100 00 00 00111222333333345556
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHH------HHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSA------ASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
..++|+|+||+.+|.+........+|+.++|+|++.. .|+. .......+++.- .-..++|++||+|+.
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~--~FE~gfd~~gQtrEha~llr~L----gi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG--EFESGFDPGGQTREHALLLRSL----GISQLIVAINKMDLV 328 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcc--hhhhccCCCCchHHHHHHHHHc----CcceEEEEeeccccc
Confidence 7899999999999999888888899999999999863 2221 222233333321 234689999999998
Q ss_pred CCC--CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc
Q 024474 190 TAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 253 (267)
Q Consensus 190 ~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 253 (267)
.=. -.+++...+...+.+. . . |. ..++.|+|||+.+|+
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~----~------------------g--f~--es~v~FIPiSGl~Ge 368 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKES----C------------------G--FK--ESSVKFIPISGLSGE 368 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHh----c------------------C--cc--cCCcceEecccccCC
Confidence 643 2344555555444221 0 0 11 346789999999998
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=99.70 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=61.2
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC---------CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
..+.+||.+|+...+..|.+++.+++++|||+|+++.. +.+.+....+..++....+ .++|+++++||.
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~--~~~piil~~NK~ 261 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF--ANTSIILFLNKI 261 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc--cCCcEEEEEecH
Confidence 56789999999999999999999999999999999731 3577777888888876543 789999999999
Q ss_pred CCC
Q 024474 187 DKV 189 (267)
Q Consensus 187 Dl~ 189 (267)
|+.
T Consensus 262 D~~ 264 (342)
T smart00275 262 DLF 264 (342)
T ss_pred HhH
Confidence 975
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.7e-11 Score=101.55 Aligned_cols=159 Identities=23% Similarity=0.183 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
.|+..|+...|||||+..+.+..... .+...-.+.+..............+.++|.||++++-...-..+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~--l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDR--LPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhccccccc--chhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 47889999999999999998865321 1111112222333333333333489999999999988877778888999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|++++ +.....+...++..- .-...++|+||+|+.+.... .+.+++.+....
T Consensus 80 vV~~deG---l~~qtgEhL~iLdll----gi~~giivltk~D~~d~~r~---e~~i~~Il~~l~---------------- 133 (447)
T COG3276 80 VVAADEG---LMAQTGEHLLILDLL----GIKNGIIVLTKADRVDEARI---EQKIKQILADLS---------------- 133 (447)
T ss_pred EEeCccC---cchhhHHHHHHHHhc----CCCceEEEEeccccccHHHH---HHHHHHHHhhcc----------------
Confidence 9999875 222222222333321 22345999999999865422 222333222211
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
-.+..++.+|+++|+ |++|.+.|.+..
T Consensus 134 -------------l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -------------LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -------------cccccccccccccCCCHHHHHHHHHHhh
Confidence 123456999999999 999999988754
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-11 Score=99.55 Aligned_cols=142 Identities=14% Similarity=0.226 Sum_probs=80.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceee---e--eccccceeEeecc--cCCCccccEEEEeCCCCCCchhh---H
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT---S--MEPNEDTFVLHSE--STKGKIKPVHLVDVPGHSRLRPK---L 133 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~---~--~~~~~~~~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~---~ 133 (267)
.++|+|+|.+|+|||||+|.|++......... . ....+........ .-++..+.++++||||+.+.... +
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 36899999999999999999998664322100 0 0000111111111 11455678999999997643211 1
Q ss_pred -----------Hhhh-------------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 134 -----------DEFL-------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 134 -----------~~~~-------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
..++ .+.|++||+++++.. .+....-....-+. ..+++|-|+.|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~--~L~~~Di~~mk~Ls------~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH--GLKPLDIEFMKRLS------KRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS--SS-HHHHHHHHHHT------TTSEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc--cchHHHHHHHHHhc------ccccEEeEEeccccc
Confidence 1111 246899999999863 34444433333333 567899999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 190 TAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
........++.+.+.+........
T Consensus 156 t~~el~~~k~~i~~~l~~~~I~~f 179 (281)
T PF00735_consen 156 TPEELQAFKQRIREDLEENNIKIF 179 (281)
T ss_dssp -HHHHHHHHHHHHHHHHHTT--S-
T ss_pred CHHHHHHHHHHHHHHHHHcCceee
Confidence 766666667777766665444333
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=98.21 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-------cceeeeeccccc------------eeEeec-cc-C---CCcccc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-------QGTVTSMEPNED------------TFVLHS-ES-T---KGKIKP 117 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~-------~~~~~~~~~~~~------------~~~~~~-~~-~---~~~~~~ 117 (267)
....+|.++|+...|||||..+|.+-... ++..-....... .+.... .. . ..-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 46779999999999999999999763211 110000000000 000000 00 0 011146
Q ss_pred EEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH
Q 024474 118 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 197 (267)
Q Consensus 118 ~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 197 (267)
+.|+|.|||+-.-...-.-..--|+.++|+.++.+. -..+..+.+..+-- . .-..+++|-||+||...+...+-
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc-PQPQT~EHl~AleI-i----gik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-PQPQTREHLMALEI-I----GIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC-CCCchHHHHHHHhh-h----ccceEEEEecccceecHHHHHHH
Confidence 899999998854443333333458999999998752 22233333332211 0 33468999999999865444333
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 198 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.+++.+.+. . ....+.+++++||..+- |+.|.++|.++++.
T Consensus 162 y~qIk~Fvk---G--------------------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 162 YEQIKEFVK---G--------------------------TVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHHhc---c--------------------------cccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 333333222 1 11456689999999999 99999999998863
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-10 Score=91.94 Aligned_cols=158 Identities=19% Similarity=0.169 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceee--------eecc-----ccce-eEeecc---------------cCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT--------SMEP-----NEDT-FVLHSE---------------STK 112 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~--------~~~~-----~~~~-~~~~~~---------------~~~ 112 (267)
...+.|+++|++|+|||||+++++........+. ..+. .+.. ...... ...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 4567899999999999999999875411000000 0000 0000 000000 001
Q ss_pred CccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 113 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
.....+.+++|.|.-.... .+....+..+.|+|..+... ...... .. ...|.++++||+|+....
T Consensus 100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~---~~~~~~-~~--------~~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDD---KPLKYP-GM--------FKEADLIVINKADLAEAV 164 (207)
T ss_pred cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccc---hhhhhH-hH--------HhhCCEEEEEHHHccccc
Confidence 1134677888888211111 11123456677888876421 111111 11 345679999999997532
Q ss_pred CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 193 TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. . ...+.+.++++ ....+++++||++|+ ++++++|+.++.+
T Consensus 165 ~~-~-~~~~~~~l~~~------------------------------~~~~~i~~~Sa~~g~gv~~l~~~i~~~~~ 207 (207)
T TIGR00073 165 GF-D-VEKMKADAKKI------------------------------NPEAEIILMSLKTGEGLDEWLEFLEGQVK 207 (207)
T ss_pred hh-h-HHHHHHHHHHh------------------------------CCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 21 1 11122222221 123468999999999 9999999998764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-10 Score=95.09 Aligned_cols=143 Identities=15% Similarity=0.263 Sum_probs=92.1
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-eeeeccc----cceeEeecccC--CCccccEEEEeCCCCCCchh-
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-VTSMEPN----EDTFVLHSEST--KGKIKPVHLVDVPGHSRLRP- 131 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-~~~~~~~----~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~- 131 (267)
+..-.++|+++|+.|.||||++|.|++....... .....+. +.........+ ++....++++||||+.++-.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 3466789999999999999999999987432221 0011111 11122222222 45557899999999875421
Q ss_pred --hHH-----------hhh--------------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 132 --KLD-----------EFL--------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 132 --~~~-----------~~~--------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
.|+ .|+ .+.|+++|.+.++.. .+..+.-.++.-+. ..+.+|-|+.
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh--~l~~~DIe~Mk~ls------~~vNlIPVI~ 170 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH--GLKPLDIEAMKRLS------KRVNLIPVIA 170 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC--CCCHHHHHHHHHHh------cccCeeeeee
Confidence 222 222 246899999998863 45555444433333 4567899999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 185 KTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 185 K~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
|+|..........++.+.+.+.....
T Consensus 171 KaD~lT~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 171 KADTLTDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhCC
Confidence 99998877777777777777765543
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.5e-11 Score=96.70 Aligned_cols=152 Identities=22% Similarity=0.274 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK------ 132 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------ 132 (267)
..+.+.|.++|..|+|||||+++|++....... ..+.+|+...-..+ ++ ..+-+.||-|+-.--+.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp----sg--~~vlltDTvGFisdLP~~LvaAF 248 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP----SG--NFVLLTDTVGFISDLPIQLVAAF 248 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC----CC--cEEEEeechhhhhhCcHHHHHHH
Confidence 356678999999999999999999965432211 22344433222211 23 46889999996532111
Q ss_pred --HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc----EEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 024474 133 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP----VLICCNKTDKVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 133 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p----vivv~nK~Dl~~~~~~~~~~~~l~~~~~ 206 (267)
.-..+..+|+++.|+|++.+ ..+....-....+....+ ...| ++=|-||+|........
T Consensus 249 ~ATLeeVaeadlllHvvDiShP--~ae~q~e~Vl~vL~~igv--~~~pkl~~mieVdnkiD~e~~~~e~----------- 313 (410)
T KOG0410|consen 249 QATLEEVAEADLLLHVVDISHP--NAEEQRETVLHVLNQIGV--PSEPKLQNMIEVDNKIDYEEDEVEE----------- 313 (410)
T ss_pred HHHHHHHhhcceEEEEeecCCc--cHHHHHHHHHHHHHhcCC--CcHHHHhHHHhhccccccccccCcc-----------
Confidence 11234579999999999997 355555555555554332 2223 45677888876443221
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+. .+++||++|+ ++++++.+...+.
T Consensus 314 --------------------------------E~n~-~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 --------------------------------EKNL-DVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred --------------------------------ccCC-ccccccccCccHHHHHHHHHHHhh
Confidence 1111 5778999999 9999999887653
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=89.83 Aligned_cols=64 Identities=31% Similarity=0.478 Sum_probs=44.8
Q ss_pred ccEEEEeCCCCCCc----hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 116 KPVHLVDVPGHSRL----RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 116 ~~~~l~DtpG~~~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
..+.|+||||..+. ...+..++..+|++|+|.+++.. ........+.+.... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~--~~~~~~~~l~~~~~~-----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD--LTESDMEFLKQMLDP-----DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST--GGGHHHHHHHHHHTT-----TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc--cchHHHHHHHHHhcC-----CCCeEEEEEcCC
Confidence 35899999997542 34577889999999999999885 222344555555543 344489999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=94.30 Aligned_cols=173 Identities=17% Similarity=0.176 Sum_probs=102.9
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCc------ccce-----eeeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGST------HQGT-----VTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
+..+..+|..+|+.+.|||||..+++.--. ...+ .+.-...+.+.......+......+-.+|+||+.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 456778999999999999999988753110 0000 01111112222222222233445788999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCC-cEEEEEecCCCCCCCCH-HHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-PVLICCNKTDKVTAHTK-EFIRKQMEKEID 206 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~ 206 (267)
|-.....-..+.|+.|+|+.++++. +....+.+.-..+ -+. .+++++||+|+.++... +.+.-++.+.+.
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGp--mPqTrEHiLlarq------vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ------VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCC--CCcchhhhhhhhh------cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 8777666667889999999999862 3344443322221 455 47888999999875332 333333444444
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeecc-------Cc--chhHHHHHHhhcCC
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT-------GE--ISQVEQFIREQVKP 267 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-------g~--i~~l~~~l~~~~~p 267 (267)
.+. |. ..+.+++..||.. ++ |.+|.+.+.+++++
T Consensus 160 ~y~-------------------------f~--gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 160 EYG-------------------------FP--GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HcC-------------------------CC--CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 321 10 2244566666652 12 78888888888764
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=90.66 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=26.5
Q ss_pred HHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 56 ~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+..+.......+.++|+||+|||||++++++.
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455678889999999999999999988764
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-10 Score=90.97 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=44.3
Q ss_pred ccEEEEeCCCCCCc-------------hhhHHhhhcc-CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEE
Q 024474 116 KPVHLVDVPGHSRL-------------RPKLDEFLPQ-AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181 (267)
Q Consensus 116 ~~~~l~DtpG~~~~-------------~~~~~~~~~~-~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pviv 181 (267)
..+.++||||.... ..+...|++. .+++++|+|+...... .........+ . +.+.|+++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~-~d~l~ia~~l-d-----~~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLAN-SDALKLAKEV-D-----PQGERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCc-hhHHHHHHHH-H-----HcCCcEEE
Confidence 47899999998531 1234567774 5699999998753121 1112222222 2 26789999
Q ss_pred EEecCCCCCC
Q 024474 182 CCNKTDKVTA 191 (267)
Q Consensus 182 v~nK~Dl~~~ 191 (267)
|+||+|....
T Consensus 198 ViTK~D~~~~ 207 (240)
T smart00053 198 VITKLDLMDE 207 (240)
T ss_pred EEECCCCCCc
Confidence 9999998754
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=92.71 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC----Ccccc---------eeeeecc---ccceeEe------ecccCCCccccEE
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG----STHQG---------TVTSMEP---NEDTFVL------HSESTKGKIKPVH 119 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~----~~~~~---------~~~~~~~---~~~~~~~------~~~~~~~~~~~~~ 119 (267)
.....|+++|+.++|||||+|+|.+. +.... -+++... ++++-.+ .....++-..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45678999999999999999999887 33210 1111111 1111111 1111244456899
Q ss_pred EEeCCCCCCchhh-----------------------------HHhhhc-cCCEEEEEE-eCC--C--CCCchHHHHHHHH
Q 024474 120 LVDVPGHSRLRPK-----------------------------LDEFLP-QAAGIVFVV-DAL--E--FLPNCSAASEYLY 164 (267)
Q Consensus 120 l~DtpG~~~~~~~-----------------------------~~~~~~-~~d~ii~v~-d~~--~--~~~~~~~~~~~l~ 164 (267)
++||+|...-..+ ....+. .+|..|+|. |.+ + +.+-.+.-..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999997532110 223455 789988888 774 1 1112333444555
Q ss_pred HHHhcCCCCCCCCcEEEEEecCCC
Q 024474 165 DILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 165 ~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
++.+ .++|+++|+||+|-
T Consensus 175 eLk~------~~kPfiivlN~~dp 192 (492)
T TIGR02836 175 ELKE------LNKPFIILLNSTHP 192 (492)
T ss_pred HHHh------cCCCEEEEEECcCC
Confidence 5443 78999999999994
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=91.80 Aligned_cols=146 Identities=14% Similarity=0.220 Sum_probs=92.9
Q ss_pred hhcCCCCEEEEEcCCCCCHHHHHHHHHcCCccccee----eeeccccceeEeecccC--CCccccEEEEeCCCCCCchh-
Q 024474 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV----TSMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRLRP- 131 (267)
Q Consensus 59 ~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~- 131 (267)
.++.-.++++++|+.|.|||||+|.|+...+..... ......+..+......+ ++-..+++++||||+.+...
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence 344566899999999999999999998875432210 01111122222222223 45567889999999875321
Q ss_pred -------------hHHhhh-------------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 132 -------------KLDEFL-------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 132 -------------~~~~~~-------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
..+.|+ .+.|+++|.+.++.. .+..+.-.+..-+. ..+.+|-|+-|
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh--gL~p~Di~~Mk~l~------~~vNiIPVI~K 167 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH--GLKPLDIEFMKKLS------KKVNLIPVIAK 167 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC--CCcHhhHHHHHHHh------ccccccceeec
Confidence 122232 157899999998863 35555444444333 56778999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 186 TDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 186 ~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
+|..........++.+.+.+.......
T Consensus 168 aD~lT~~El~~~K~~I~~~i~~~nI~v 194 (366)
T KOG2655|consen 168 ADTLTKDELNQFKKRIRQDIEEHNIKV 194 (366)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcce
Confidence 999887777667777666666544333
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.4e-10 Score=87.53 Aligned_cols=148 Identities=17% Similarity=0.247 Sum_probs=90.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeee--cc--ccceeEeecccC--CCccccEEEEeCCCCCCchh---
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM--EP--NEDTFVLHSEST--KGKIKPVHLVDVPGHSRLRP--- 131 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~--~~--~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~--- 131 (267)
..-.++|+++|.+|.|||||+|.|......+...... .+ .+.........+ ++-..+++++||||+.++..
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 4456899999999999999999997665433211111 11 122222222222 45456789999999875421
Q ss_pred hHH-----------hhhc--------------cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 132 KLD-----------EFLP--------------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 132 ~~~-----------~~~~--------------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
+|+ .|++ +.++++|.+.++.. ++..+.-.+..-+. .-..++-|+-|.
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh--sLrplDieflkrLt------~vvNvvPVIaka 194 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH--SLRPLDIEFLKRLT------EVVNVVPVIAKA 194 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC--ccCcccHHHHHHHh------hhheeeeeEeec
Confidence 222 2332 36899999998863 45544333332222 234578899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 187 DKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 187 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
|-..-+...+.++.+++.+........+..
T Consensus 195 DtlTleEr~~FkqrI~~el~~~~i~vYPq~ 224 (336)
T KOG1547|consen 195 DTLTLEERSAFKQRIRKELEKHGIDVYPQD 224 (336)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCccccccc
Confidence 987766677777777777766655555433
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.7e-10 Score=84.94 Aligned_cols=81 Identities=21% Similarity=0.134 Sum_probs=51.2
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+.-|+|+|.+.+++......-.+ .. -=++|+||.||.+.... -.+.+.+...++
T Consensus 119 ~~~v~VidvteGe~~P~K~gP~i-----------~~-aDllVInK~DLa~~v~~--dlevm~~da~~~------------ 172 (202)
T COG0378 119 HLRVVVIDVTEGEDIPRKGGPGI-----------FK-ADLLVINKTDLAPYVGA--DLEVMARDAKEV------------ 172 (202)
T ss_pred ceEEEEEECCCCCCCcccCCCce-----------eE-eeEEEEehHHhHHHhCc--cHHHHHHHHHHh------------
Confidence 47899999988733221100000 01 23799999999865432 112222222222
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+|+++|++||+ +++|.+|+....
T Consensus 173 ------------------np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 173 ------------------NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ------------------CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 456789999999999 999999998764
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=97.14 Aligned_cols=182 Identities=19% Similarity=0.238 Sum_probs=115.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--c---cceee----eeccccceeEeecccC--CCccccEEEEeCCCCCCch
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--H---QGTVT----SMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~---~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~ 130 (267)
...++++++.+...|||||...|...+- . .+.+. .-+.+++..+.+...+ --+.+.++++|+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 3456899999999999999999875431 0 00000 0111222222222222 2355789999999999999
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---CCCHHHHHHHHHHHHHH
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~~~~~~~~~~l~~~~~~ 207 (267)
+......+-+|+.++.+|+..+ -.......+++... .+..+++|+||+|... ...+.+....+.+.++.
T Consensus 87 sevssas~l~d~alvlvdvveg--v~~qt~~vlrq~~~------~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEG--VCSQTYAVLRQAWI------EGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccc--cchhHHHHHHHHHH------ccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 9999999999999999999886 23344455555433 5666799999999432 24667778888888888
Q ss_pred HHhhhhcccccccc-ccccCCCCCCCcccccccceeEEEEeeeccCc
Q 024474 208 LRASRSAVSEADVT-NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 253 (267)
Q Consensus 208 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 253 (267)
.+...+++-..-.. +.-.......+..|..-.+|+ +.+||..|-
T Consensus 159 vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNV--if~~A~~~~ 203 (887)
T KOG0467|consen 159 VNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNV--IFASALDGW 203 (887)
T ss_pred hhhHHHHhhcchhhccchhhhhhhcceeecCCCCcE--EEEEecccc
Confidence 87776654322110 000001113345566555554 458888875
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-10 Score=91.47 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=70.3
Q ss_pred CCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 024474 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 127 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~ 206 (267)
+++..+.+.+++++|++++|+|+.++..++..+..|+..+.. .++|+++|+||+||....... .+.. .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~------~~i~~vIV~NK~DL~~~~~~~--~~~~----~ 91 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA------QNIEPIIVLNKIDLLDDEDME--KEQL----D 91 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECcccCCCHHHH--HHHH----H
Confidence 456666777899999999999999874588888888865432 678999999999996432211 1111 1
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.+ . ..+..++++||++|+ +++|++.|.+.
T Consensus 92 ~~---------------------------~--~~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 92 IY---------------------------R--NIGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred HH---------------------------H--HCCCeEEEEecCCchhHHHHHhhhcCC
Confidence 11 0 123478999999999 99999988653
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.3e-09 Score=88.31 Aligned_cols=88 Identities=26% Similarity=0.398 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeecccC-------C----CccccEEEEeCCCCCC--
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSEST-------K----GKIKPVHLVDVPGHSR-- 128 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~l~DtpG~~~-- 128 (267)
..++.|+|.||+|||||+|.++......+ .-.|+.|+.+...+..... . .....+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 46899999999999999999998764222 2346777765554432211 1 1124689999999653
Q ss_pred -----chhhHHhhhccCCEEEEEEeCCC
Q 024474 129 -----LRPKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 129 -----~~~~~~~~~~~~d~ii~v~d~~~ 151 (267)
.....-..++.+|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 23335567889999999999874
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.5e-09 Score=94.30 Aligned_cols=120 Identities=14% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh------h----H
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP------K----L 133 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~------~----~ 133 (267)
..+|+++|.+|+||||++|.|++.... .+....+.++.........++ ..+.++||||..+... . .
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf--~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKF--STDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccc--cccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 468999999999999999999987532 122222222222111112233 5799999999876421 1 1
Q ss_pred Hhhhc--cCCEEEEEEeCCCCCCchH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 134 DEFLP--QAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 134 ~~~~~--~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..++. .+|++|||..+.......+ .+...+.+++... .-..+|||+|+.|..++
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~----Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS----IWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH----hHcCEEEEEeCCccCCC
Confidence 22433 4899999988764312112 2344444444421 22458999999998763
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=92.55 Aligned_cols=86 Identities=21% Similarity=0.315 Sum_probs=54.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeeccc-------CCC---ccccEEEEeCCCCCCch--
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES-------TKG---KIKPVHLVDVPGHSRLR-- 130 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~l~DtpG~~~~~-- 130 (267)
.+|+++|.||+|||||+|+|++.....+ .-+|+.|+.+...+.... .+. ....+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 5899999999999999999998763111 112233333333322210 000 11258999999975421
Q ss_pred --h---hHHhhhccCCEEEEEEeCC
Q 024474 131 --P---KLDEFLPQAAGIVFVVDAL 150 (267)
Q Consensus 131 --~---~~~~~~~~~d~ii~v~d~~ 150 (267)
. ..-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 2234578899999999985
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=85.47 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-----hHHhhhc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-----KLDEFLP 138 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-----~~~~~~~ 138 (267)
..||+++|.+|+||||+-..+..+...... ...++ +-++......+-|. ..+++||++|++.+-. .....++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~-~rlg~-tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDT-RRLGA-TIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhh-hccCC-cceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhhe
Confidence 458999999999999987766543321111 11111 11222222222222 5789999999985422 2345678
Q ss_pred cCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 139 QAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 139 ~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
..+++++|||+... +..+.....-+..++++ .+...+++..+|+|+......+.+-+.-...+..
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~----SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~ 147 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQN----SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRR 147 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhc----CCcceEEEEEeechhcccchHHHHHHHHHHHHHH
Confidence 89999999999763 12233344445555554 3677899999999998776665555444444443
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=90.69 Aligned_cols=84 Identities=25% Similarity=0.382 Sum_probs=52.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeecccC-------CCc---cccEEEEeCCCCCCch----
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSEST-------KGK---IKPVHLVDVPGHSRLR---- 130 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~l~DtpG~~~~~---- 130 (267)
|+++|.||+|||||+|+|++.....+ .-+|+.|..+...+..... +.. ...++++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999999764211 1122333333333221110 110 1259999999975421
Q ss_pred h---hHHhhhccCCEEEEEEeCC
Q 024474 131 P---KLDEFLPQAAGIVFVVDAL 150 (267)
Q Consensus 131 ~---~~~~~~~~~d~ii~v~d~~ 150 (267)
. ..-..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 2234567899999999975
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.6e-09 Score=88.24 Aligned_cols=185 Identities=19% Similarity=0.206 Sum_probs=109.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeee----------e-ccccceeEeec-----------cc---------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS----------M-EPNEDTFVLHS-----------ES--------- 110 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~----------~-~~~~~~~~~~~-----------~~--------- 110 (267)
+....+...|+.+.|||||+-.|..+...++.-.+ + ..-+.+..+.. ..
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 45678999999999999999888765543321100 0 00000000000 00
Q ss_pred -CCCccccEEEEeCCCCCCchhhHHh--hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 111 -TKGKIKPVHLVDVPGHSRLRPKLDE--FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 111 -~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
+.....-+.++||.|++.+-....+ .-++.|-.++++-++++. ....++.+--.+. ...|+++|+||+|
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~--~~~tkEHLgi~~a------~~lPviVvvTK~D 266 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV--TKMTKEHLGIALA------MELPVIVVVTKID 266 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc--chhhhHhhhhhhh------hcCCEEEEEEecc
Confidence 1111235889999999977554333 235689999999998862 2233444433333 6899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccccc-ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD-VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
+.++.....+.+.+...+.........+...+ .-..... ...-..-+++|.+|+.||+ ++-|.+++.
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a--------~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKA--------MKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhh--------hhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 99887777777777777766432222221111 1000000 0111346799999999999 776665554
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-09 Score=87.61 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=104.7
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCC-------ccc-cee---eeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGS-------THQ-GTV---TSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~-------~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
+..+..+|.-+|+...|||||-.+++.-- +.. ..+ +.-...+-+.....+.+......+-=.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 45677899999999999999988775311 000 000 0111112222222222223334566789999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDK 207 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~ 207 (267)
|......-..+-|+.|+|+.++++ .+.+..+.+.-..+- .=..+++++||.|+.++.. .+-+.=++++.+..
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG--~MPQTrEHlLLArQV-----GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDG--PMPQTREHLLLARQV-----GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCC--CCcchHHHHHHHHHc-----CCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 887777777788999999999996 355566655433331 2235889999999985433 33333344444443
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeec---cC------c--chhHHHHHHhhcC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGL---TG------E--ISQVEQFIREQVK 266 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~g------~--i~~l~~~l~~~~~ 266 (267)
+. |+ ..+.+++..||. .| . |.+|.+.+.++++
T Consensus 203 ~g-------------------------f~--Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 203 FG-------------------------FD--GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred cC-------------------------CC--CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 31 11 345667777765 33 2 7778888887764
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-09 Score=94.67 Aligned_cols=123 Identities=18% Similarity=0.200 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccc-------------cceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN-------------EDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
+.++|.+.-+-.+||||+-++.+...--...+...... +.+.........+..++++++|||||-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 45589999999999999999875421100011101000 11111111122344679999999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 194 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 194 (267)
.-..++.++-.|+.++|+|+..+ .+.. ....++.. +.+.|.+.++||+|...+...
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~G---VqsQt~tV~rQ~~------ry~vP~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAG---VESQTETVWRQMK------RYNVPRICFINKMDRMGASPF 174 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccc---eehhhHHHHHHHH------hcCCCeEEEEehhhhcCCChH
Confidence 99999999999999999999876 2222 23333333 278999999999998776543
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=84.82 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=60.1
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC---------CchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
...+.+.|.+||..-+..|.+++.++++||||+++++.. +.+.+....+..+..+.. -.++++|+++||
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~--F~~tsiiLFLNK 271 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW--FANTSIILFLNK 271 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc--cccCcEEEEeec
Confidence 367999999999988889999999999999999987531 235566677777776653 478999999999
Q ss_pred CCCCC
Q 024474 186 TDKVT 190 (267)
Q Consensus 186 ~Dl~~ 190 (267)
.||..
T Consensus 272 ~DLFe 276 (354)
T KOG0082|consen 272 KDLFE 276 (354)
T ss_pred HHHHH
Confidence 99863
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.4e-08 Score=76.41 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=78.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEee-----cccCCCccccEEEEeCCCCCCchh---hHHhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLH-----SESTKGKIKPVHLVDVPGHSRLRP---KLDEF 136 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~ 136 (267)
++|+++|...+||||+-.-...+ +.|+.+-+... ...+.+.-+.+++||.||+.++-. -.+..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk---------MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~i 98 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK---------MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMI 98 (347)
T ss_pred ceEEEEeecccCcchhhheeeec---------cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHH
Confidence 67999999999999987655443 22222222211 112233446899999999876532 25567
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
++++.++|||+|+.+. ..+....+......+....+++.+=|++.|.|-..+..
T Consensus 99 F~~~gALifvIDaQdd---y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 99 FRGVGALIFVIDAQDD---YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred HhccCeEEEEEechHH---HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 8899999999999874 44444455555555444568889999999999765543
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-08 Score=82.67 Aligned_cols=124 Identities=20% Similarity=0.286 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEee------------cccCC-----------------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLH------------SESTK----------------- 112 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~----------------- 112 (267)
...+-|+++|+-..||||+++.|+...++...+. ..|++..+..- ...++
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riG-pEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIG-PEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccC-CCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 3456899999999999999999999887643222 22222222210 00000
Q ss_pred ---------CccccEEEEeCCCCCC-----------chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCC
Q 024474 113 ---------GKIKPVHLVDVPGHSR-----------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTV 172 (267)
Q Consensus 113 ---------~~~~~~~l~DtpG~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~ 172 (267)
.---.++++||||.-+ |....+-+..++|.|+++||+..- +--.+....+..+..
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKL-DIsdEf~~vi~aLkG---- 209 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKL-DISDEFKRVIDALKG---- 209 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhc-cccHHHHHHHHHhhC----
Confidence 0012489999999653 344456688899999999998764 222333343444333
Q ss_pred CCCCCcEEEEEecCCCCCCCC
Q 024474 173 VKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 173 ~~~~~pvivv~nK~Dl~~~~~ 193 (267)
..-.+-||+||.|..+..+
T Consensus 210 --~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 210 --HEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred --CcceeEEEeccccccCHHH
Confidence 3445789999999876543
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-07 Score=77.62 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC--CCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
+.+.+|+++|..++|||||+.+|-+.+-.. +..+-.+.+-.+.- .....++.+|=.-|......+....+..
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~~K------kgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~a 123 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSETVK------KGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPA 123 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccccC------CCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccc
Confidence 577899999999999999999998865211 11122222222221 2223577788877877655665554433
Q ss_pred C----CEEEEEEeCCCCCCchHHHHHHH
Q 024474 140 A----AGIVFVVDALEFLPNCSAASEYL 163 (267)
Q Consensus 140 ~----d~ii~v~d~~~~~~~~~~~~~~l 163 (267)
. ..+|++.|.+++..-++.+..|.
T Consensus 124 ts~aetlviltasms~Pw~~lesLqkWa 151 (473)
T KOG3905|consen 124 TSLAETLVILTASMSNPWTLLESLQKWA 151 (473)
T ss_pred cCccceEEEEEEecCCcHHHHHHHHHHH
Confidence 2 36888899998755555555554
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=86.09 Aligned_cols=189 Identities=19% Similarity=0.220 Sum_probs=111.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccce------------------eeeeccccceeEe--eccc----------CCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT------------------VTSMEPNEDTFVL--HSES----------TKG 113 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~------------------~~~~~~~~~~~~~--~~~~----------~~~ 113 (267)
..+++++|...+|||||+--|+.+..+.+. .+++....-.+.. +.+. .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 468999999999999999888765543221 1111110000000 0000 122
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhcc--CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQ--AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
....++++|.+|+.+|.......+.+ .|..++|+++..+.. ....+.+.-+.. -++|++++++|+|+...
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~--~tTrEHLgl~~A------L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT--WTTREHLGLIAA------LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc--cccHHHHHHHHH------hCCCeEEEEEeeccccc
Confidence 33468999999999887664443332 578888888877521 122333333332 68999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 192 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
...+...+.+...+.+......+..-+.-++... .+++ ...++-+++|.+|+.+|+ ++-|..+| +++.|
T Consensus 319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~---Aaq~---~~s~nivPif~vSsVsGegl~ll~~fL-n~Lsp 388 (591)
T KOG1143|consen 319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVK---AAQE---LCSGNIVPIFAVSSVSGEGLRLLRTFL-NCLSP 388 (591)
T ss_pred hhHHHHHHHHHHHHhhcCccccceEeechHHHHH---HHHH---hccCCceeEEEEeecCccchhHHHHHH-hhcCC
Confidence 7777777777777776544433321111111100 0000 112566789999999999 77666555 34443
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.1e-09 Score=87.41 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=104.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccc------------------ceeeeeccccceeE---------------eeccc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ------------------GTVTSMEPNEDTFV---------------LHSES 110 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~------------------~~~~~~~~~~~~~~---------------~~~~~ 110 (267)
..+++++|...+|||||+-.|+.++... +..+++....-.|. ..+..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 4689999999999999997665443321 11111111000010 01111
Q ss_pred C-CCccccEEEEeCCCCCCchhhHHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 111 T-KGKIKPVHLVDVPGHSRLRPKLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 111 ~-~~~~~~~~l~DtpG~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
+ .....-++++|.+|++.|-...---+ .-.|..++++-++.+ -+...++.+--.+. -..|+++|.+|+|
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALa------L~VPVfvVVTKID 284 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALA------LHVPVFVVVTKID 284 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhh------hcCcEEEEEEeec
Confidence 1 12223589999999998755432222 236888888887764 23344454544443 6789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
+.++...++-.+.+.+.+.......-++--...++. .....+|.- ..-+++|.+|..+|+ ++-|+.||.
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDV---v~~A~NF~S---er~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDV---VHAAVNFPS---ERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccce---EEeeccCcc---ccccceEEeccccCCChHHHHHHHh
Confidence 998876666555555555432211111111111111 011112221 345678999999999 888877764
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=78.52 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=58.7
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 209 (267)
+.+.++.++++|++++|+|++++..... ..+...+. ..+.|+++|+||+|+.... ... .... +..
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~---~~l~~~~~-----~~~~p~iiv~NK~Dl~~~~---~~~-~~~~-~~~-- 67 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS---RKLERYVL-----ELGKKLLIVLNKADLVPKE---VLE-KWKS-IKE-- 67 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC---HHHHHHHH-----hCCCcEEEEEEhHHhCCHH---HHH-HHHH-HHH--
Confidence 4567778888999999999987522111 12222222 1568999999999985321 111 1110 000
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ +++|++.|.+.+
T Consensus 68 -----------------------------~~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 68 -----------------------------SEGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred -----------------------------hCCCcEEEEEccccccHHHHHHHHHHHH
Confidence 112357899999999 999999998764
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=72.63 Aligned_cols=91 Identities=12% Similarity=0.018 Sum_probs=61.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+|++++|..|+|||+|+.++....+..... + ++.. +......+.+.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~--~-~t~~--------------------------~~~~~~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPT--V-FTIG--------------------------IDVYDPTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCc--e-ehhh--------------------------hhhccccccCCCCEEE
Confidence 489999999999999999997766532111 0 0000 2222334567789999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.|++.... .+++.. |...++... +.+.|.++++||.|+..
T Consensus 52 ~v~~~~~~-~s~~~~--~~~~i~~~~---k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 52 QCWRVDDR-DSADNK--NVPEVLVGN---KSDLPILVGGNRDVLEE 91 (124)
T ss_pred EEEEccCH-HHHHHH--hHHHHHhcC---CCCCcEEEEeechhhHh
Confidence 99998875 455443 655554432 35688999999999843
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-08 Score=78.10 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=62.1
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
++..+..+++++|++++|+|+++...+... .+ ... ..+.|+++|+||+|+..........+.+.+... .
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~---~l---~~~----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-~ 92 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIP---RL---RLF----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA-A 92 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccch---hH---HHh----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH-H
Confidence 578888999999999999999875222211 11 111 256899999999999754322111111110000 0
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
... . .....++++||++|+ +++|+++|.+.+
T Consensus 93 --~~~-----------------------~-~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 93 --AGL-----------------------G-LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred --hhc-----------------------C-CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 000 0 011247899999999 999999998865
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.77 E-value=5e-08 Score=74.89 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=37.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
....+++++|.||+|||||+|+|.+... ..+..++.++... .....+. .+.++||||.
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~--~~~~~~~g~T~~~--~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKV--CKVAPIPGETKVW--QYITLMK---RIYLIDCPGV 157 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCc--eeeCCCCCeeEeE--EEEEcCC---CEEEEECcCC
Confidence 3467899999999999999999998653 1222232222222 2222222 4789999994
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-08 Score=86.60 Aligned_cols=143 Identities=18% Similarity=0.315 Sum_probs=96.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceee------------eeccccceeEeec------------------cc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT------------SMEPNEDTFVLHS------------------ES 110 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~------------~~~~~~~~~~~~~------------------~~ 110 (267)
.++.+++.++.+...|||||...|....- .++ .-+.+.+..++.. ..
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAg---Iis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAG---IISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhc---eeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 45677899999999999999998864321 111 0011111111111 01
Q ss_pred CCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC-
Q 024474 111 TKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV- 189 (267)
Q Consensus 111 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~- 189 (267)
.++..+.++++|.||+-+|.+..-..++-.|+.++|+|.-++ -.-+....+.+.+. ..+..++|.||+|..
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~G--vCVQTETVLrQA~~------ERIkPvlv~NK~DRAl 164 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG--VCVQTETVLRQAIA------ERIKPVLVMNKMDRAL 164 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCc--eEechHHHHHHHHH------hhccceEEeehhhHHH
Confidence 245567899999999999999999999999999999999875 23344455555554 344457899999953
Q ss_pred --CCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 190 --TAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 190 --~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
-..+.+++.+.+++..+.++...+.
T Consensus 165 LELq~~~EeLyqtf~R~VE~vNviisT 191 (842)
T KOG0469|consen 165 LELQLSQEELYQTFQRIVENVNVIIST 191 (842)
T ss_pred HhhcCCHHHHHHHHHHHHhcccEEEEe
Confidence 2446777888787777766554443
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-08 Score=76.50 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=38.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
....+++++|.||+|||||+|+|.+.... .+...+.++.. ......+ ..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~--~~~~~pg~T~~--~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRAC--NVGATPGVTKS--MQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccc--eecCCCCeEcc--eEEEEeC---CCEEEEECcCC
Confidence 44579999999999999999999986531 22222222222 2222222 26899999994
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-07 Score=80.46 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC--CCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
.....|+|+|..++|||||+.+|.+.+-+. . ..+-.|.+-.+.- .....++.+|-..|...+..++.-.+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~~---~---~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~ 96 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDPK---K---GLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTP 96 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCCC---C---CcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCc
Confidence 466799999999999999999997654211 1 1122233222211 1223468999888866666666544432
Q ss_pred C----CEEEEEEeCCCCCCchHHHHHHH
Q 024474 140 A----AGIVFVVDALEFLPNCSAASEYL 163 (267)
Q Consensus 140 ~----d~ii~v~d~~~~~~~~~~~~~~l 163 (267)
. -++|+|+|.+.+..-++.+..|+
T Consensus 97 ~~l~~t~vvIvlDlS~PW~~~esL~~W~ 124 (472)
T PF05783_consen 97 ENLPNTLVVIVLDLSKPWNIMESLEKWL 124 (472)
T ss_pred ccccceEEEEEecCCChHHHHHHHHHHH
Confidence 1 36888999998754444444443
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.4e-09 Score=89.14 Aligned_cols=121 Identities=26% Similarity=0.247 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--------Ccccce-eeee----ccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--------STHQGT-VTSM----EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--------~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
+.++|.++.+..+||||...+++.- .+.++. ++.. ...+-+.....+..++++++++++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 3458999999999999999987531 111111 1110 01122333444556888899999999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
+-..++.++-.|+++.|||++.+ -..+.+.-|- +. .+.++|-++++||+|...+
T Consensus 116 ~leverclrvldgavav~dasag-ve~qtltvwr-qa------dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAG-VEAQTLTVWR-QA------DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCC-cccceeeeeh-hc------cccCCchhhhhhhhhhhhh
Confidence 99999999999999999999886 2222233332 21 2478999999999998654
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.1e-08 Score=84.67 Aligned_cols=112 Identities=17% Similarity=0.255 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++.+-++++||||+|||||+..|...-. ..++....+..++ +.++..++++..+|. +...+ ......+|
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTv----vsgK~RRiTflEcp~--Dl~~m-iDvaKIaD 135 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITV----VSGKTRRITFLECPS--DLHQM-IDVAKIAD 135 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEE----eecceeEEEEEeChH--HHHHH-HhHHHhhh
Confidence 4566777999999999999999876431 1122211222222 246667899999993 33333 34556799
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCC
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAH 192 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~ 192 (267)
.+++++|.+-+ ++.....+..++.. .+.| ++-|+|+.|+....
T Consensus 136 LVlLlIdgnfG---fEMETmEFLnil~~-----HGmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 136 LVLLLIDGNFG---FEMETMEFLNILIS-----HGMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred eeEEEeccccC---ceehHHHHHHHHhh-----cCCCceEEEEeecccccCh
Confidence 99999999876 55444455566653 4444 78899999998643
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.9e-08 Score=74.53 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=54.9
Q ss_pred hhhccCCEEEEEEeCCCCCCc-hHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 135 EFLPQAAGIVFVVDALEFLPN-CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..+..+|++++|+|+.++..+ ...+...+ ... ..+.|+++|+||+|+.+. ++. ...+..+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l----~~~---~~~~p~ilVlNKiDl~~~---~~~----~~~~~~~~---- 65 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYL----KKE---KPHKHLIFVLNKCDLVPT---WVT----ARWVKILS---- 65 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHH----Hhc---cCCCCEEEEEEchhcCCH---HHH----HHHHHHHh----
Confidence 456789999999999875222 22333333 221 246899999999999642 111 12222210
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+ ......+++||++|. +++|.++|.++
T Consensus 66 -----------------------~-~~~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 66 -----------------------K-EYPTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred -----------------------c-CCcEEEEEeeccccccHHHHHHHHHHH
Confidence 0 111235789999999 99999998765
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-08 Score=84.11 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=42.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.....+++++|-||+|||||+|+|.+... ..+...+ +.+.......++. .+.++||||.--
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~--~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGii~ 189 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKV--AKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGIIP 189 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccc--eeeCCCC--ceecceEEEEcCC---CeEEecCCCcCC
Confidence 34567899999999999999999999864 1222222 3333334443333 489999999653
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.2e-07 Score=82.20 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=51.9
Q ss_pred cEEEEeCCCCCC---chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 117 PVHLVDVPGHSR---LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 117 ~~~l~DtpG~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
.+.++|.||.+- ..+....+...+|++|||+.+.+. .....+.++....+ .+..++|+-||.|....+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~------~KpniFIlnnkwDasase- 277 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE------EKPNIFILNNKWDASASE- 277 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc------cCCcEEEEechhhhhccc-
Confidence 478999999763 344566788899999999998763 23344555555443 344577788888986443
Q ss_pred HHHHHHHHHHHHH
Q 024474 194 KEFIRKQMEKEID 206 (267)
Q Consensus 194 ~~~~~~~l~~~~~ 206 (267)
.+..+.+.+.++
T Consensus 278 -~ec~e~V~~Qi~ 289 (749)
T KOG0448|consen 278 -PECKEDVLKQIH 289 (749)
T ss_pred -HHHHHHHHHHHH
Confidence 333444444444
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.6e-08 Score=83.42 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=60.5
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
.+..+.++|.+++|+|+.++.-....+..|+.... ..++|+++|+||+||.... +.. .+.+.+.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~------~~~ip~ILVlNK~DLv~~~---~~~-~~~~~~~------ 146 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE------STGLEIVLCLNKADLVSPT---EQQ-QWQDRLQ------ 146 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH------HCCCCEEEEEEchhcCChH---HHH-HHHHHHH------
Confidence 34468899999999999875224445566665442 2678999999999996431 111 1111111
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..++.++++||++|+ +++|+++|.++
T Consensus 147 --------------------------~~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 147 --------------------------QWGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred --------------------------hcCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 112357899999999 99999988754
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=84.35 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=82.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.++.+.+.++|+.++|||.+++.+.++.+.++...+..+ .+.++.+...+....+.+-|.+-. ......+.- ..|
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~---~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKP---RYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCC---ceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 466788999999999999999999998887644444333 234444444455556777776643 222222222 568
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
|++.++||.+++ .++............ ....|+++|++|+|+...
T Consensus 497 Dv~~~~YDsS~p-~sf~~~a~v~~~~~~-----~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 497 DVACLVYDSSNP-RSFEYLAEVYNKYFD-----LYKIPCLMVATKADLDEV 541 (625)
T ss_pred eeEEEecccCCc-hHHHHHHHHHHHhhh-----ccCCceEEEeeccccchh
Confidence 999999999986 666666555444332 278999999999999654
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.8e-08 Score=73.63 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=36.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
.+++++|.+|+|||||+|+|.+.... .++.....+. ......+++ .+.+|||||..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~--~~~~~~~~~~--~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKV--SVSATPGKTK--HFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCce--eeCCCCCccc--ceEEEEeCC---CEEEEECCCcC
Confidence 38999999999999999999987642 1221211122 222222233 57999999964
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.3e-07 Score=72.39 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------HHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-------LDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-------~~~~ 136 (267)
..+|+++|.|.+|||||+..++.... ...++..++-+..-... ..++..+++.|.||.-+-.+. ....
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~S---eaA~yeFTTLtcIpGvi--~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHS---EAASYEFTTLTCIPGVI--HYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchh---hhhceeeeEEEeecceE--EecCceEEEecCcccccccccCCCCCceEEEE
Confidence 45899999999999999999987653 22233333322222222 333357999999997643322 2234
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHH
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYD 165 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~ 165 (267)
.+.+|.+++|.|++..+..-+.+...+..
T Consensus 137 ArtaDlilMvLDatk~e~qr~~le~ELe~ 165 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREILEKELEA 165 (364)
T ss_pred eecccEEEEEecCCcchhHHHHHHHHHHH
Confidence 57799999999999863222233444443
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.2e-08 Score=79.72 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC----------Cchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS----------RLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~----------~~~~ 131 (267)
.+.+.++++|..|+|||||+|.+............ -++.+-..+...++ .++.++|.||.. ++..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~--K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS--KNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC--CCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhH
Confidence 56689999999999999999998875532211111 11222333333333 368899999932 2233
Q ss_pred hHHhhhccC---CEEEEEEeCCCCC-CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 132 KLDEFLPQA---AGIVFVVDALEFL-PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 132 ~~~~~~~~~---d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
....|+-+- -.+.+.+|++-+- ........|+.+ .+.|..+|+||||...
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge---------~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE---------NNVPMTSVFTKCDKQK 262 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh---------cCCCeEEeeehhhhhh
Confidence 344454332 2455667776531 223344555543 8899999999999753
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=79.66 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=38.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
....+++++|.||+|||||+|+|.+.... .+...+.++. ......++. .+.++||||..
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~--~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~~ 174 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVA--KVGNRPGVTK--GQQWIKLSD---GLELLDTPGIL 174 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc--ccCCCCCeec--ceEEEEeCC---CEEEEECCCcc
Confidence 45678999999999999999999986532 1122222122 222222222 57999999984
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=70.50 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccceeeeeccccce-eEeecccCCCccccEEEEeCCCCCCchh---h---
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDT-FVLHSESTKGKIKPVHLVDVPGHSRLRP---K--- 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~--- 132 (267)
.+...|+|+|++++|||+|+|+|.+. .+... .+..+++.. +........+....+.++||||..+... .
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~--~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVM--DTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEec--CCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 34557999999999999999999998 54321 122222222 2222111122346899999999875432 1
Q ss_pred HHhhhc--cCCEEEEEEeCCCC
Q 024474 133 LDEFLP--QAAGIVFVVDALEF 152 (267)
Q Consensus 133 ~~~~~~--~~d~ii~v~d~~~~ 152 (267)
....+. -++++||..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 112222 38999998887654
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-08 Score=74.57 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
..++++|++|||||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999999864
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=4e-07 Score=76.87 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=39.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
....+++++|.||+|||||+|+|.+.... .+...+.++. .......+. .+.++||||...
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~--~~~~~~g~T~--~~~~~~~~~---~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA--KTGNRPGVTK--AQQWIKLGK---GLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc--ccCCCCCeEE--EEEEEEeCC---cEEEEECCCcCC
Confidence 45679999999999999999999986531 1222222222 222222222 588999999764
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=75.00 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc------ceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ------GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
...+++++|.+|+|||||+|+|.+..... ..++..+. ++........+. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPG--TTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCC--eeeeeEEEecCC---CCEEEeCcCC
Confidence 45689999999999999999999754311 11222222 222222222222 5789999994
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=73.44 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=59.2
Q ss_pred CCCCC-CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 024474 123 VPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201 (267)
Q Consensus 123 tpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l 201 (267)
.||+. +........+.++|++++|+|++++...... .+...+ .+.|+++|+||+|+... ....+.+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~---~i~~~~-------~~k~~ilVlNK~Dl~~~---~~~~~~~ 68 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP---LLEKIL-------GNKPRIIVLNKADLADP---KKTKKWL 68 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh---hhHhHh-------cCCCEEEEEehhhcCCh---HHHHHHH
Confidence 35543 2334456778899999999999875222111 111111 35789999999999532 1111111
Q ss_pred HHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 202 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.+. .....++.+||++|+ +++|.+.|.+.+
T Consensus 69 ----~~~~-----------------------------~~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 69 ----KYFE-----------------------------SKGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ----HHHH-----------------------------hcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 1110 001247889999999 999999988764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-07 Score=71.47 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
...++++++|.+|+|||||+|++.+..+. .+..... .+.......++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~--~~~~~~~--~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA--KVGNKPG--VTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce--eecCCCC--EEeeeEEEEec---CCEEEEECCCC
Confidence 45579999999999999999999987642 1111111 11222222222 36899999995
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=67.37 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=39.5
Q ss_pred cccEEEEeCCCCCCchhhHHhh--------hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEF--------LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
.....++||||..+........ .-..|.+++++|+............ +..-+.. .+ ++|+||+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~-~~~Qi~~-----ad---~ivlnk~ 156 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTE-AQSQIAF-----AD---RILLNKT 156 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHH-HHHHHHH-----CC---EEEEecc
Confidence 3577899999987655554432 2347899999998764221211122 2222222 22 6799999
Q ss_pred CC
Q 024474 187 DK 188 (267)
Q Consensus 187 Dl 188 (267)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 96
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.4e-07 Score=76.46 Aligned_cols=87 Identities=20% Similarity=0.147 Sum_probs=57.0
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+.++|++++|+|+.++.........|+..+.. .++|+++|+||+|+... .+... ...+..+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~------~~ip~iIVlNK~DL~~~--~~~~~-~~~~~~~---------- 138 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA------NGIKPIIVLNKIDLLDD--LEEAR-ELLALYR---------- 138 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEhHHcCCC--HHHHH-HHHHHHH----------
Confidence 57899999999998762333444566554432 67899999999999632 11111 1111111
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+..++++||++|+ +++|+++|...
T Consensus 139 ----------------------~~g~~v~~vSA~~g~gi~~L~~~l~gk 165 (298)
T PRK00098 139 ----------------------AIGYDVLELSAKEGEGLDELKPLLAGK 165 (298)
T ss_pred ----------------------HCCCeEEEEeCCCCccHHHHHhhccCc
Confidence 112468999999999 99999887643
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.5e-07 Score=69.45 Aligned_cols=81 Identities=23% Similarity=0.240 Sum_probs=50.3
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHH-HHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLY-DILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|+|+.++..+.. .++. ..+. ..++|+++|+||+|+... +...+.+.. +..
T Consensus 1 Dvvl~VvD~~~p~~~~~---~~i~~~~~~-----~~~~p~IiVlNK~Dl~~~---~~~~~~~~~-~~~------------ 56 (155)
T cd01849 1 DVILEVLDARDPLGTRS---PDIERVLIK-----EKGKKLILVLNKADLVPK---EVLRKWLAY-LRH------------ 56 (155)
T ss_pred CEEEEEEeccCCccccC---HHHHHHHHh-----cCCCCEEEEEechhcCCH---HHHHHHHHH-HHh------------
Confidence 78999999987632222 2232 2222 267899999999999643 221111111 110
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.....++.+||++|. +++|.+.|.+.
T Consensus 57 -------------------~~~~~ii~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 57 -------------------SYPTIPFKISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred -------------------hCCceEEEEeccCCcChhhHHHHHHHH
Confidence 112357889999999 99999988653
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.9e-07 Score=67.81 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
....+++++|.+|+||||++|++.+.... .+..... .+........+ ..+.+|||||.
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~--~~~~~~~--~t~~~~~~~~~---~~~~~~DtpGi 156 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSA--STSPSPG--YTKGEQLVKIT---SKIYLLDTPGV 156 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc--ccCCCCC--eeeeeEEEEcC---CCEEEEECcCC
Confidence 45678999999999999999999975421 1111111 11222222122 26899999994
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.8e-07 Score=75.89 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=59.6
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.+.++|.+++|+|+.++..+...+..|+..+.. .++|+++|+||+||... .+. ... .....
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~------~~ip~iIVlNK~DL~~~--~~~-~~~-~~~~~--------- 135 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA------AGIEPVIVLTKADLLDD--EEE-ELE-LVEAL--------- 135 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH------cCCCEEEEEEHHHCCCh--HHH-HHH-HHHHH---------
Confidence 477899999999998863266777777765443 57899999999999643 111 000 00000
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
..+.+++++||++|. +++|.++|..
T Consensus 136 -----------------------~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 136 -----------------------ALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -----------------------hCCCeEEEEECCCCccHHHHHhhhcc
Confidence 123468899999999 9999988864
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.47 E-value=9e-07 Score=76.30 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=58.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCc-ccc--eeeeeccccceeEeeccc-------C---CCccccEEEEeCCCCCCc--
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGST-HQG--TVTSMEPNEDTFVLHSES-------T---KGKIKPVHLVDVPGHSRL-- 129 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~l~DtpG~~~~-- 129 (267)
.++.++|.||+|||||+|.|++... ..+ .-+|+.|+.+...+.... + ......+.+.|.||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5899999999999999999998764 222 223345555444433211 1 111236899999997542
Q ss_pred -----hhhHHhhhccCCEEEEEEeCCC
Q 024474 130 -----RPKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 130 -----~~~~~~~~~~~d~ii~v~d~~~ 151 (267)
....-..++.+|+++.|+|+.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 2245567899999999999864
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-07 Score=77.52 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=72.6
Q ss_pred cEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC---CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 117 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
.+.++|+||++-.-...-.-..--|++++++-.++.. +.-+++.. .++. .-..++++-||+||..+..
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM-------~LkhiiilQNKiDli~e~~ 196 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM-------KLKHIIILQNKIDLIKESQ 196 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh-------hhceEEEEechhhhhhHHH
Confidence 5789999998754333222222357788888776531 12222211 1122 2245899999999998776
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 194 KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+..+.+.+.+..- ...+.+++++||--+- |+.+.|+|.++++
T Consensus 197 A~eq~e~I~kFi~~t-----------------------------~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 197 ALEQHEQIQKFIQGT-----------------------------VAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHHHHHhcc-----------------------------ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 666666666544421 1345578999999998 9999999999865
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.7e-07 Score=77.87 Aligned_cols=100 Identities=24% Similarity=0.278 Sum_probs=65.4
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKE 204 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~ 204 (267)
.++|..+...+.+.++++++|+|+.+...++ ...+.+.+ .+.|+++|+||+|+.+.. ..+.+.+.+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~-------~~~piilV~NK~DLl~k~~~~~~~~~~l~~~ 119 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFV-------GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR 119 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHh-------CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence 3467777888889999999999998763322 22232222 367999999999997543 333344333332
Q ss_pred HHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 205 IDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..... .....++++||++|. ++++++.|.++
T Consensus 120 ~k~~g-----------------------------~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 120 AKELG-----------------------------LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHcC-----------------------------CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 22110 001147889999999 99999998764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-07 Score=75.47 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=62.6
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeecccC----------CCccccEEEEeCCCCC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSEST----------KGKIKPVHLVDVPGHS 127 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~DtpG~~ 127 (267)
|.....++.|+|.||+|||||+|.|++.....+. -.|+.|+.....+....+ ......++++|++|.-
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 3456779999999999999999999987654322 235666655443332211 1122468999999975
Q ss_pred Cc-------hhhHHhhhccCCEEEEEEeCCC
Q 024474 128 RL-------RPKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 128 ~~-------~~~~~~~~~~~d~ii~v~d~~~ 151 (267)
.- ....-..++.+|+++-|+++..
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 32 2234467788999999998764
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-07 Score=69.76 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
....+++++|.+|+|||||+|.|.+.... .+.....++..... ...+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~--~~~~~~~~t~~~~~--~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKL--KVGNVPGTTTSQQE--VKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccc--cccCCCCcccceEE--EEec---CCEEEEECCCC
Confidence 46788999999999999999999986521 11112222222222 1112 35899999994
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.1e-07 Score=76.43 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=59.7
Q ss_pred CCCCCC-chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 024474 123 VPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201 (267)
Q Consensus 123 tpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l 201 (267)
.|||.. ........+..+|++++|+|+..+..+.. ..+.+.+ .+.|+++|+||+|+.+. ....+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~---~~i~~~l-------~~kp~IiVlNK~DL~~~---~~~~~~~ 70 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN---PMIDEIR-------GNKPRLIVLNKADLADP---AVTKQWL 70 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC---hhHHHHH-------CCCCEEEEEEccccCCH---HHHHHHH
Confidence 366542 23346678889999999999987522222 2222222 35799999999999642 1111111
Q ss_pred HHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 202 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.+.. ....++.+||++|. +++|.+.|.+.+
T Consensus 71 -~~~~~--------------------------------~~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 71 -KYFEE--------------------------------KGIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred -HHHHH--------------------------------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11110 01247889999999 999988887654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.41 E-value=5e-06 Score=73.28 Aligned_cols=65 Identities=20% Similarity=0.134 Sum_probs=38.6
Q ss_pred cccEEEEeCCCCCCchhhHH----hh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLD----EF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+.|+||||........- .+ ....|-+++|+|+..+ .........+.+. -.+--+|+||.|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G-q~a~~~a~~F~~~---------~~~~g~IlTKlD~ 251 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG-QAAEAQAKAFKDS---------VDVGSVIITKLDG 251 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC-hhHHHHHHHHHhc---------cCCcEEEEECccC
Confidence 47899999999765433221 11 2346889999999876 2233333333221 1234677888885
Q ss_pred C
Q 024474 189 V 189 (267)
Q Consensus 189 ~ 189 (267)
.
T Consensus 252 ~ 252 (429)
T TIGR01425 252 H 252 (429)
T ss_pred C
Confidence 3
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-06 Score=73.89 Aligned_cols=88 Identities=24% Similarity=0.282 Sum_probs=60.4
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
..++|.+++|++.... .++..+..|+.... ..++|+++|+||+||......... .+.+..+.
T Consensus 118 aANvD~vlIV~s~~p~-~s~~~Ldr~L~~a~------~~~i~~VIVlNK~DL~~~~~~~~~----~~~~~~y~------- 179 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-LSLNIIDRYLVACE------TLGIEPLIVLNKIDLLDDEGRAFV----NEQLDIYR------- 179 (347)
T ss_pred EEEccEEEEEEeCCCC-CCHHHHHHHHHHHH------hcCCCEEEEEECccCCCcHHHHHH----HHHHHHHH-------
Confidence 3568999999998654 67888888876442 267899999999999754221111 11111110
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++++||++|+ +++|+++|.+.
T Consensus 180 ----------------------~~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 180 ----------------------NIGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred ----------------------hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 112478999999999 99999999764
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.3e-07 Score=66.84 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=35.3
Q ss_pred HHhhhccCCEEEEEEeCCCCCCch-HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
....+..+|++++|+|+.++.... ..+..++... ..++|+++|+||+|+..
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-------~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-------DPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-------cCCCcEEEEEechhcCC
Confidence 456788999999999998763322 2333433321 14689999999999864
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.9e-07 Score=79.39 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-cceeeeecccc--ceeEeecccCCCccccEEEEeCCCCCCch
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNE--DTFVLHSESTKGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 130 (267)
.++++|.+|||||||+|+|.+.... .+.++.....+ ++.......+.+. ..++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 4899999999999999999976432 11111111111 1111222222222 2599999988753
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.2e-07 Score=76.38 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++|+|++|||||||+|+|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 58999999999999999999764
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-06 Score=74.26 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=59.6
Q ss_pred CCCCCC-chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 024474 123 VPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201 (267)
Q Consensus 123 tpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l 201 (267)
.|||.. ........+..+|++|+|+|+..+..+.. .++.+.+ .+.|+++|+||+|+.+. ....+ .
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~---~~l~~~~-------~~kp~iiVlNK~DL~~~---~~~~~-~ 72 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN---PMIDKII-------GNKPRLLILNKSDLADP---EVTKK-W 72 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC---hhHHHHh-------CCCCEEEEEEchhcCCH---HHHHH-H
Confidence 467542 23345678889999999999987522221 2233332 35789999999999632 11111 1
Q ss_pred HHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 202 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+.+. .....++.+||++|. +++|.+.|.+.+
T Consensus 73 ~~~~~--------------------------------~~~~~vi~vSa~~~~gi~~L~~~l~~~l 105 (287)
T PRK09563 73 IEYFE--------------------------------EQGIKALAINAKKGQGVKKILKAAKKLL 105 (287)
T ss_pred HHHHH--------------------------------HcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11111 001346889999999 888888776653
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-06 Score=69.84 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=56.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc
Q 024474 13 MEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFR-RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ 91 (267)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~ 91 (267)
.....+.++........+..+.......+......+..+.....+..+ ...++.+.|+|-||+|||||+|.+.......
T Consensus 91 ~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk 170 (335)
T KOG2485|consen 91 QKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRK 170 (335)
T ss_pred hhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhh
Confidence 344445444442222223333333332233333333333332223222 4678999999999999999999875432211
Q ss_pred ceeeeeccc-cceeEeec-ccCCCccccEEEEeCCCCCC
Q 024474 92 GTVTSMEPN-EDTFVLHS-ESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~l~DtpG~~~ 128 (267)
....+.+.. +.+..+.. ..+... -.+.++||||...
T Consensus 171 ~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGil~ 208 (335)
T KOG2485|consen 171 KKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGILV 208 (335)
T ss_pred ccceeccCCCCceeeehhheEeccC-CceEEecCCCcCC
Confidence 111112211 22222222 222222 3689999999653
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.6e-06 Score=68.61 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC--CCccccEEEEeCCCCCCc-------hhh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRL-------RPK 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~-------~~~ 132 (267)
.-.++|+.+|..|.|||||+..|.+..+.....+-..|+ .......... .+-..+++++||.|..+. .+.
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~-V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPN-VKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCC-ceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 445799999999999999999999988754333222221 1122222222 334467899999997642 211
Q ss_pred -------HHhhh---------------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 133 -------LDEFL---------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 133 -------~~~~~---------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.+.|+ .+.++++|.+.++.. ++..+.-....-+. ....||-|+-|.|-..
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH--~LKslDLvtmk~Ld------skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH--SLKSLDLVTMKKLD------SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc--chhHHHHHHHHHHh------hhhhhHHHHHHhhhhh
Confidence 22222 246899999999873 45555443333332 5667888999999754
Q ss_pred C
Q 024474 191 A 191 (267)
Q Consensus 191 ~ 191 (267)
.
T Consensus 191 K 191 (406)
T KOG3859|consen 191 K 191 (406)
T ss_pred H
Confidence 3
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4e-06 Score=73.12 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc--c-eeeeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--G-TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
...++.++|.+|||||||+|+|.+..... . .++..+.++. .......++ ...++||||...
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~--~~~~~~l~~---~~~l~DTPGi~~ 222 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTL--DKIEIPLDD---GSFLYDTPGIIH 222 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccc--eeEEEEcCC---CcEEEECCCccc
Confidence 34589999999999999999998643111 1 1222322222 222222222 247999999853
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.9e-06 Score=66.54 Aligned_cols=82 Identities=22% Similarity=0.258 Sum_probs=46.6
Q ss_pred cccEEEEeCCCCCCchhhH--Hh---hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKL--DE---FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~--~~---~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.....++.+.|..+..... .. ..-..+.++.|+|+... .........+..-++.++ ++|+||+|+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~-~~~~~~~~~~~~Qi~~AD--------vIvlnK~D~~ 154 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNF-DELENIPELLREQIAFAD--------VIVLNKIDLV 154 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTH-GGHTTHCHHHHHHHCT-S--------EEEEE-GGGH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccc-cccccchhhhhhcchhcC--------EEEEeccccC
Confidence 3577889999977665551 11 12246899999999764 223344444444444432 7999999987
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 024474 190 TAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~ 208 (267)
+... ..+.+.+.++++
T Consensus 155 ~~~~---~i~~~~~~ir~l 170 (178)
T PF02492_consen 155 SDEQ---KIERVREMIREL 170 (178)
T ss_dssp HHH-----HHHHHHHHHHH
T ss_pred Chhh---HHHHHHHHHHHH
Confidence 5431 223444444444
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-06 Score=72.27 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
..++++|++|+|||||+|+|.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 479999999999999999999764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.4e-05 Score=62.19 Aligned_cols=68 Identities=18% Similarity=0.087 Sum_probs=40.6
Q ss_pred ccccEEEEeCCCCCCchhhHH----h---hh-----ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEE
Q 024474 114 KIKPVHLVDVPGHSRLRPKLD----E---FL-----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~----~---~~-----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pviv 181 (267)
..+.+.++||||......... . .. ..+|.+++|+|++.+.+.+... ....+. . .+--+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~-----~-~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEA-----V-GLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhh-----C-CCCEE
Confidence 346899999999765333211 1 11 1378999999998652223222 222221 1 13478
Q ss_pred EEecCCCCCC
Q 024474 182 CCNKTDKVTA 191 (267)
Q Consensus 182 v~nK~Dl~~~ 191 (267)
|+||.|....
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999998544
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.1e-06 Score=71.13 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccc---ceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhh---
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFL--- 137 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~--- 137 (267)
+.+++++|.+|+|||||+|+|++..... ..++..+.++ ........++ .+.++||||....... ..++
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~---~~~l~DtPG~~~~~~~-~~~l~~~ 227 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDD---GHSLYDTPGIINSHQM-AHYLDKK 227 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCC---CCEEEECCCCCChhHh-hhhcCHH
Confidence 4699999999999999999999754211 1222222222 2222222222 3679999998754322 2211
Q ss_pred --------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 138 --------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 138 --------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
+....+.+.+|.... -.+.. ..++. .+ ......+.++++|.+.......+...+.+++.
T Consensus 228 ~l~~~~~~~~i~~~~~~l~~~q~-~~~gg-l~~~d-~~-----~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~ 294 (360)
T TIGR03597 228 DLKYITPKKEIKPKTYQLNPNQT-LFLGG-LARFD-YL-----KGEKTSFTFYVSNELNIHRTKLENADELYNKH 294 (360)
T ss_pred HHhhcCCCCccCceEEEeCCCCE-EEEce-EEEEE-Ee-----cCCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence 234566777665542 01110 01110 11 12345678888888766554444444444443
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-06 Score=72.21 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++++|++|+|||||+|.|.+..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 34579999999999999999998764
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=61.16 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=37.3
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.+.+.++||+|... ....++..+|.++++..+... +...-.+. .++.. -=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~-D~y~~~k~---~~~~~--------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAG-DDIQAIKA---GIMEI--------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCch-hHHHHhhh---hHhhh--------cCEEEEeCCC
Confidence 47899999999653 223588889999999887743 22222222 22221 1278999998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.4e-06 Score=81.55 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=66.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccee---eeeccccceeEeecccCCCccccEEEEeCCCCC--------CchhhH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTV---TSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS--------RLRPKL 133 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~--------~~~~~~ 133 (267)
+=.+|+|++|+||||+++.- +-.++-... ......+.+..+..-. . -.-.++||+|.- .....|
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf-~---~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF-T---DEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe-c---CCEEEEcCCCccccCCCcccccHHHH
Confidence 55899999999999999976 333321110 0000111111111110 1 146799999932 122345
Q ss_pred Hhhh---------ccCCEEEEEEeCCCCCC-ch-------HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 134 DEFL---------PQAAGIVFVVDALEFLP-NC-------SAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 134 ~~~~---------~~~d~ii~v~d~~~~~~-~~-------~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
..++ +-.++||+++|+.+-.. +- ..+...+.++.+. .....||.||+||+|+.
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~---lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ---LGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEEecchhh
Confidence 5443 34799999999875311 11 1233344444443 24789999999999976
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3e-06 Score=72.43 Aligned_cols=170 Identities=17% Similarity=0.149 Sum_probs=95.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--------------cc-----ceee----eec---cccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--------------HQ-----GTVT----SME---PNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--------------~~-----~~~~----~~~---~~~~~~~~~~~~~~~~~ 115 (267)
....+++++|...+||||+-..+....- .+ -+.+ +.. ..+.+............
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 5678999999999999998765532100 00 0000 000 00111222222223333
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC--CchH---HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PNCS---AASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~~---~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.++++.|+||+..|.+....-..++|+-++|+++..++ ..++ +..+....... ..-...|+++||+|-..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-----~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-----AGVKHLIVLINKMDDPT 231 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-----hccceEEEEEEeccCCc
Confidence 57999999999999888777788999999999985421 1121 11222211111 14456899999999776
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHH
Q 024474 191 AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVE 258 (267)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~ 258 (267)
..-..+..+++...+..+-. ... |. ....+.|++||..+|. +.+..
T Consensus 232 vnWs~eRy~E~~~k~~~fLr-~~g--------------------~n-~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLR-KLG--------------------FN-PKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cCcchhhHHHHHHHHHHHHH-Hhc--------------------cc-CCCCceeeecccccccchhhcc
Confidence 55444444444333332211 000 00 0235678899999997 66544
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.8e-05 Score=66.46 Aligned_cols=117 Identities=21% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccce---eeeeccc---------------cceeEeeccc-------------C
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT---VTSMEPN---------------EDTFVLHSES-------------T 111 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~---~~~~~~~---------------~~~~~~~~~~-------------~ 111 (267)
++..++++|++|+||||++..|...-...+. +.+.++. ...+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999887542111110 1111100 0001000000 0
Q ss_pred CCccccEEEEeCCCCCCchhh----HHhhh--------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcE
Q 024474 112 KGKIKPVHLVDVPGHSRLRPK----LDEFL--------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179 (267)
Q Consensus 112 ~~~~~~~~l~DtpG~~~~~~~----~~~~~--------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pv 179 (267)
....+.+.++||||....... ..... ...+..++|+|++.+.+.+... ....+ .-.+.
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~------~~~~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHE------AVGLT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHh------hCCCC
Confidence 123468999999997643222 22221 2467899999999763333332 22211 11234
Q ss_pred EEEEecCCCC
Q 024474 180 LICCNKTDKV 189 (267)
Q Consensus 180 ivv~nK~Dl~ 189 (267)
-+|+||.|..
T Consensus 263 giIlTKlD~t 272 (318)
T PRK10416 263 GIILTKLDGT 272 (318)
T ss_pred EEEEECCCCC
Confidence 7899999954
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.1e-06 Score=70.76 Aligned_cols=62 Identities=26% Similarity=0.254 Sum_probs=36.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccc-eeeeecccc--ceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG-TVTSMEPNE--DTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
..++++|++|+|||||+|.|.+...... .++.....+ ++.........+ ...++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 5899999999999999999998653221 121100001 111112222222 2369999998765
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-06 Score=75.30 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
...|.++|-|||||||+||.|.+.+. ..+++.+ +.+..+.+..+.. .+.+.||||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk--VsVS~TP--GkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK--VSVSSTP--GKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce--eeeecCC--CCcceeEEEEcCC---CceecCCCCcc
Confidence 57899999999999999999999863 1333333 3334444444444 57899999965
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=67.47 Aligned_cols=82 Identities=32% Similarity=0.428 Sum_probs=52.9
Q ss_pred ccEEEEeCCCCCCchhhHHhhhc--------cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
....++.|.|..+..+....+.. ..|+++-|+|+...........+.+.+-+..+. ++|+||+|
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD--------~ivlNK~D 156 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD--------VIVLNKTD 156 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc--------EEEEeccc
Confidence 56789999999887666554433 257899999998763333334445554444332 79999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~ 209 (267)
+.++.. .+.+++.+.+++
T Consensus 157 lv~~~~----l~~l~~~l~~ln 174 (323)
T COG0523 157 LVDAEE----LEALEARLRKLN 174 (323)
T ss_pred CCCHHH----HHHHHHHHHHhC
Confidence 987653 344445555543
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.8e-06 Score=67.88 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=53.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~~~~~ 138 (267)
++.++|.|.+||||++..|++... .+.++..++ +..-...+..+.-++++.|.||.-+-.. ......+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s---~vasyeftt--l~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTT--LTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCC---cccccccee--EEEecceEeccccceeeecCcchhcccccCCCCccEEEEEee
Confidence 899999999999999999998643 333333322 2211222223335899999999754211 1223456
Q ss_pred cCCEEEEEEeCCCC
Q 024474 139 QAAGIVFVVDALEF 152 (267)
Q Consensus 139 ~~d~ii~v~d~~~~ 152 (267)
.|..+++|.|+..+
T Consensus 136 tcnli~~vld~~kp 149 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKP 149 (358)
T ss_pred cccEEEEEeeccCc
Confidence 78899999998765
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-06 Score=71.06 Aligned_cols=63 Identities=25% Similarity=0.313 Sum_probs=36.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCc-ccceeeeecccc--ceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGST-HQGTVTSMEPNE--DTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
....+++|++|+|||||+|+|..... ..+.++.....+ ++.........+.+ .++||||+.++
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 34789999999999999999987432 111222211111 11112222222222 48999998765
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-05 Score=67.66 Aligned_cols=128 Identities=14% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc---cee--eeecccc-------------ceeEeeccc---------CCCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTV--TSMEPNE-------------DTFVLHSES---------TKGK 114 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~---~~~--~~~~~~~-------------~~~~~~~~~---------~~~~ 114 (267)
.++..++++|++|+||||++.+|....... ..+ .+.+... ......... ....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 345689999999999999999986532100 011 1111100 000111010 0112
Q ss_pred cccEEEEeCCCCCCchhhHHh---hhc---cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDE---FLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~---~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
...+.++||+|.......... .+. ...-.++|++++...+.+......+.......... ..-+-=+|+||.|-
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~-~~~~~~~I~TKlDE 293 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAA-LPDLAGCILTKLDE 293 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccc-cCCCCEEEEecccc
Confidence 358999999997754333222 222 23456899999876334444433333332110000 00123477899997
Q ss_pred CC
Q 024474 189 VT 190 (267)
Q Consensus 189 ~~ 190 (267)
..
T Consensus 294 t~ 295 (374)
T PRK14722 294 AS 295 (374)
T ss_pred CC
Confidence 54
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.8e-05 Score=57.86 Aligned_cols=112 Identities=21% Similarity=0.335 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCC-CCC--------------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVP-GHS-------------- 127 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dtp-G~~-------------- 127 (267)
...+|.+.|+||+||||++.++...--..+. ..+-+......-+++..-|.++|.. |-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~------kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY------KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc------eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccc
Confidence 4569999999999999999988642111100 0111222222234444556666665 211
Q ss_pred C-----------chhhHHhhhccCCEEEEEEeCCCC-CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 128 R-----------LRPKLDEFLPQAAGIVFVVDALEF-LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 128 ~-----------~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
. ..+..++.++.+|++| +|=-.+ +-......+.+.+++. .+.|++.++.+-+.
T Consensus 78 kY~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~------~~kpliatlHrrsr 142 (179)
T COG1618 78 KYGVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLK------SGKPLIATLHRRSR 142 (179)
T ss_pred eEEeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhc------CCCcEEEEEecccC
Confidence 0 1122334566678665 563322 1112233334444443 77899999887764
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=65.36 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCc--c---cceeeeecccc-------------ceeEeeccc--------C-CCccc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGST--H---QGTVTSMEPNE-------------DTFVLHSES--------T-KGKIK 116 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~--~---~~~~~~~~~~~-------------~~~~~~~~~--------~-~~~~~ 116 (267)
+..++++|++|+||||++..|..... . .....+.++.. ......... + ....+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 45899999999999999887753221 1 11111222210 000010000 0 11236
Q ss_pred cEEEEeCCCCCCchh----hHHhhhc---cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 117 PVHLVDVPGHSRLRP----KLDEFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~----~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.+.++||||...... ....++. ...-+.+|++++.. ...+...+..+-. .+ +--+++||.|-.
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~---~~~l~~~~~~f~~------~~-~~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK---YEDLKDIYKHFSR------LP-LDGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC---HHHHHHHHHHhCC------CC-CCEEEEeccccc
Confidence 899999999764421 2333443 23467788888764 2233332222211 11 125889999975
Q ss_pred C
Q 024474 190 T 190 (267)
Q Consensus 190 ~ 190 (267)
.
T Consensus 371 ~ 371 (424)
T PRK05703 371 S 371 (424)
T ss_pred c
Confidence 3
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.4e-05 Score=65.86 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=52.3
Q ss_pred cEEEEeCCCCCC-------------chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 024474 117 PVHLVDVPGHSR-------------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183 (267)
Q Consensus 117 ~~~l~DtpG~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~ 183 (267)
+..++|.||... ...+...|+.+..+||+|+.-.. .+....-.-+++.+.. +.+...|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS----VDAERSnVTDLVsq~D--P~GrRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS----VDAERSIVTDLVSQMD--PHGRRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC----cchhhhhHHHHHHhcC--CCCCeeEEEE
Confidence 578999999642 22345578999999999985433 2233333344444443 4788899999
Q ss_pred ecCCCCCCC--CHHHHHHHHH
Q 024474 184 NKTDKVTAH--TKEFIRKQME 202 (267)
Q Consensus 184 nK~Dl~~~~--~~~~~~~~l~ 202 (267)
+|.|+.... +++.+++.++
T Consensus 487 TKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 487 TKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred eecchhhhccCCHHHHHHHHh
Confidence 999997652 4555554444
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00013 Score=54.69 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=70.8
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcccc---eeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 68 VLAGLSGSGKTVLFYQLRDGSTHQG---TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 68 ~i~G~~~~GKSsLl~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+.-|.+|+|||++.-.+...-...+ -....+++... -.+.+.++|+|+.. .......+..+|.++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~----------~~yd~VIiD~p~~~--~~~~~~~l~~aD~vv 71 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN----------LDYDYIIIDTGAGI--SDNVLDFFLAADEVI 71 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC----------CCCCEEEEECCCCC--CHHHHHHHHhCCeEE
Confidence 4567799999999776543211111 11122221111 11689999999854 344456788999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
++++++.. ++......+..+... ....++.+|+|+.+-. ...++..+.+++..++
T Consensus 72 iv~~~~~~--s~~~~~~~l~~l~~~----~~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~~r 126 (139)
T cd02038 72 VVTTPEPT--SITDAYALIKKLAKQ----LRVLNFRVVVNRAESP--KEGKKVFKRLSNVSNR 126 (139)
T ss_pred EEcCCChh--HHHHHHHHHHHHHHh----cCCCCEEEEEeCCCCH--HHHHHHHHHHHHHHHH
Confidence 99998863 455555555444332 1345678999999732 3344455555554443
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.4e-05 Score=64.98 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=27.2
Q ss_pred ccEEEEeCCCCCCchhhHHhhh-------ccCCEEEEEEeCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFL-------PQAAGIVFVVDALE 151 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~-------~~~d~ii~v~d~~~ 151 (267)
....++.|.|..+..+....+. -..|+++.|+|+..
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 5678999999988777665442 14578999999974
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.3e-05 Score=64.78 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=47.4
Q ss_pred ccEEEEeCCCCCCchhhHHhhhc--------cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
....++.|.|..+..+....++. ..++++.|+|+........... ....-+.. .+ ++|+||+|
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~-~~~~Qi~~-----AD---~IvlnK~D 161 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT-IAQSQVGY-----AD---RILLTKTD 161 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccH-HHHHHHHh-----CC---EEEEeccc
Confidence 56789999999887666655422 2478999999976422121111 12122222 22 79999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
+..+. +.+.+.+..++.
T Consensus 162 l~~~~------~~~~~~l~~lnp 178 (318)
T PRK11537 162 VAGEA------EKLRERLARINA 178 (318)
T ss_pred cCCHH------HHHHHHHHHhCC
Confidence 98631 345555555543
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=61.81 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=37.5
Q ss_pred ccEEEEeCCCCCCchhh----HHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.++||||....... ...++ ...+-+++|+|++...+.+. ......+. .+. -=+++||.|..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~----~~~~~~~~-----~~~-~~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE----QALAFYEA-----FGI-DGLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH----HHHHHHHH-----SST-CEEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH----HHHHHhhc-----ccC-ceEEEEeecCC
Confidence 67999999997754332 22222 24678999999987522222 22222221 111 24679999975
Q ss_pred CC
Q 024474 190 TA 191 (267)
Q Consensus 190 ~~ 191 (267)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 43
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.6e-06 Score=66.57 Aligned_cols=73 Identities=25% Similarity=0.337 Sum_probs=56.4
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC---------CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
+.++++|.+|+.+-+..|...+.+..+||||+.++... +.+++....+..+-.+. +...+.+|+++||.
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNR--wL~tisvIlFLNKq 279 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNR--WLRTISVILFLNKQ 279 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhh--HHhhhheeEEecHH
Confidence 56899999999999999999999999999999876421 23445555555555543 23678899999999
Q ss_pred CCCC
Q 024474 187 DKVT 190 (267)
Q Consensus 187 Dl~~ 190 (267)
|+..
T Consensus 280 Dlla 283 (379)
T KOG0099|consen 280 DLLA 283 (379)
T ss_pred HHHH
Confidence 9863
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.8e-05 Score=66.74 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=39.4
Q ss_pred ccEEEEeCCCCCCchhh----HHhh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.++||+|....... .... ....|.+++|+|+..+.+..... ..+...+ + .--+|+||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a-~~f~~~~--------~-~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA-REFNEAV--------G-IDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH-HHHHhcC--------C-CCEEEEeeecCC
Confidence 57999999997643222 2222 22578999999998763222222 2222211 1 246899999986
Q ss_pred CC
Q 024474 190 TA 191 (267)
Q Consensus 190 ~~ 191 (267)
..
T Consensus 293 ~~ 294 (336)
T PRK14974 293 AK 294 (336)
T ss_pred CC
Confidence 43
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=71.59 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=79.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.-+..|+.|+|..++|||+|+++++.+.+ +....|.++.+....+ +++....+.+-|-+|..+ ..|...+
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty----~~~e~~e~~~~kkE~v-v~gqs~lLlirdeg~~~~-----aQft~wv 96 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTY----TQDESPEGGRFKKEVV-VDGQSHLLLIRDEGGHPD-----AQFCQWV 96 (749)
T ss_pred ccchhheeeeecccCCceeeeeeecccee----ccccCCcCccceeeEE-eeccceEeeeecccCCch-----hhhhhhc
Confidence 44667999999999999999999888764 3334444555554433 355556777888877332 3566778
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
|++||||...+. .+++.+..+...+-.+.. ...+|+++++++.=
T Consensus 97 davIfvf~~~d~-~s~q~v~~l~~~l~~~r~--r~~i~l~lvgtqd~ 140 (749)
T KOG0705|consen 97 DAVVFVFSVEDE-QSFQAVQALAHEMSSYRN--ISDLPLILVGTQDH 140 (749)
T ss_pred cceEEEEEeccc-cCHHHHHHHHhhcccccc--cccchHHhhcCcch
Confidence 999999999886 677777766655543322 36778888887643
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.4e-05 Score=66.68 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=54.4
Q ss_pred hhccCC-EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhh
Q 024474 136 FLPQAA-GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 136 ~~~~~d-~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~ 213 (267)
.+...+ .+++|+|+.+...++ ...+.++. .+.|+++|+||+|+.+.. ..+.+.+.+........
T Consensus 65 ~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~-------~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g---- 130 (365)
T PRK13796 65 GIGDSDALVVNVVDIFDFNGSW---IPGLHRFV-------GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELG---- 130 (365)
T ss_pred hhcccCcEEEEEEECccCCCch---hHHHHHHh-------CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcC----
Confidence 334455 999999998863332 22333322 367899999999997532 22333322222111100
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.....++.+||++|. +++|++.|.++
T Consensus 131 -------------------------~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 131 -------------------------LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred -------------------------CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 001147889999999 99999998765
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00028 Score=63.71 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-----cceeeeecccc-------------ceeEeecccC---------CCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-----QGTVTSMEPNE-------------DTFVLHSEST---------KGK 114 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~-----~~~~~~~~~~~-------------~~~~~~~~~~---------~~~ 114 (267)
..+..++++|++|+||||++..|...-.. .....+.++.. ..+.+..... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34678999999999999999887642110 01111111100 0011111000 112
Q ss_pred cccEEEEeCCCCCCchhhHHh---hhc--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDE---FLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~---~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.+.+.|+||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+.-+|+||.|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss---~~Dl~eii~~f~~-------~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH---FSDLDEVVRRFAH-------AKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC---hhHHHHHHHHHHh-------hCCeEEEEecCcCc
Confidence 368999999997543222111 111 12346777887753 3334333333321 23567999999974
Q ss_pred C
Q 024474 190 T 190 (267)
Q Consensus 190 ~ 190 (267)
.
T Consensus 498 ~ 498 (559)
T PRK12727 498 G 498 (559)
T ss_pred c
Confidence 3
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00019 Score=55.88 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=40.1
Q ss_pred cccEEEEeCCCCCCchhh----HHhh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+.++||||...+... ...+ ....+.+++|+|+... ....+......+. .+ ..-+|.||.|.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~----~~~~~~~~~~~~~-----~~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG----QDAVNQAKAFNEA-----LG-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC----hHHHHHHHHHHhh-----CC-CCEEEEECCcC
Confidence 456899999997533221 1111 1348999999998654 2223344444332 22 25678899997
Q ss_pred CCC
Q 024474 189 VTA 191 (267)
Q Consensus 189 ~~~ 191 (267)
...
T Consensus 152 ~~~ 154 (173)
T cd03115 152 DAR 154 (173)
T ss_pred CCC
Confidence 643
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1e-05 Score=69.07 Aligned_cols=67 Identities=19% Similarity=0.323 Sum_probs=45.1
Q ss_pred HHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 56 ~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.+...+++.+.|.++|-||+||||++|.|...++. .+..++..+..+.+ +..- .++.++|+||.-..
T Consensus 299 ~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVC--kvAPIpGETKVWQY--ItLm---krIfLIDcPGvVyp 365 (572)
T KOG2423|consen 299 AKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVC--KVAPIPGETKVWQY--ITLM---KRIFLIDCPGVVYP 365 (572)
T ss_pred HhhccCccceeeeeecCCCCchHHHHHHHhhcccc--cccCCCCcchHHHH--HHHH---hceeEecCCCccCC
Confidence 34445778899999999999999999999987753 22223333322222 2111 37899999997543
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=46.91 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=29.8
Q ss_pred cCCEEEEEEeCCCCC-CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 139 QAAGIVFVVDALEFL-PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
-.++++|++|++... .+.++....+.++... -.+.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~----F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL----FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH----TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH----cCCCCEEEEEeccC
Confidence 368999999998742 3677777777777764 25899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00017 Score=62.55 Aligned_cols=118 Identities=21% Similarity=0.188 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc------ccceeeeeccccc------------eeEeeccc---------CCCcc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGST------HQGTVTSMEPNED------------TFVLHSES---------TKGKI 115 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~------~~~~~~~~~~~~~------------~~~~~~~~---------~~~~~ 115 (267)
+...|+++||.||||||-+-+|..... .-+.+++-....+ ..++.... ..-..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 377899999999999999887754322 1111111000000 00011000 01233
Q ss_pred ccEEEEeCCCCCCchhh----HHhhhccC--CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPK----LDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~----~~~~~~~~--d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.++||.|...+... ...++..+ .-+-+|++++.. ...+.+.+..+.. .+. -=+++||.|-.
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K---~~dlkei~~~f~~------~~i-~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK---YEDLKEIIKQFSL------FPI-DGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc---hHHHHHHHHHhcc------CCc-ceeEEEccccc
Confidence 68999999997755443 33444333 345667788764 3444444433322 111 24788999975
Q ss_pred C
Q 024474 190 T 190 (267)
Q Consensus 190 ~ 190 (267)
.
T Consensus 352 ~ 352 (407)
T COG1419 352 T 352 (407)
T ss_pred C
Confidence 4
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=65.01 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..++++|++|+||||++..|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988653
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.2e-05 Score=61.59 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=43.9
Q ss_pred cEEEEeCCCCCCchh---h---HHhhhccC---CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 117 PVHLVDVPGHSRLRP---K---LDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~---~---~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.+-++|+|||-+... . .-+++.+- =+++|++|+.---++......-+..+..- ..-..|-|=|++|+|
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAM---i~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAM---ISLEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHH---HHhcCcchhhhhHHH
Confidence 578999999876422 1 22333332 25777777653211222222222222111 125789999999999
Q ss_pred CCCCCCHHHHHHH
Q 024474 188 KVTAHTKEFIRKQ 200 (267)
Q Consensus 188 l~~~~~~~~~~~~ 200 (267)
|......+++...
T Consensus 176 Llk~~~k~~l~~F 188 (273)
T KOG1534|consen 176 LLKDKNKKELERF 188 (273)
T ss_pred HhhhhhHHHHHHh
Confidence 9876554444433
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=63.38 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=54.4
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
..++|.+++|+++... -+...+..++..+.. .++|.++|+||+||.+. .+...+.+.. +
T Consensus 110 aANvD~vliV~s~~p~-~~~~~ldr~L~~a~~------~~i~piIVLNK~DL~~~--~~~~~~~~~~----~-------- 168 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-FNLRRIERYLALAWE------SGAEPVIVLTKADLCED--AEEKIAEVEA----L-------- 168 (356)
T ss_pred EEeCCEEEEEEecCCC-CChhHHHHHHHHHHH------cCCCEEEEEEChhcCCC--HHHHHHHHHH----h--------
Confidence 4678999999999643 233344444433322 67788999999999753 2111121111 0
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++++.+||++|+ +++|.++|..
T Consensus 169 ----------------------~~g~~Vi~vSa~~g~gl~~L~~~L~~ 194 (356)
T PRK01889 169 ----------------------APGVPVLAVSALDGEGLDVLAAWLSG 194 (356)
T ss_pred ----------------------CCCCcEEEEECCCCccHHHHHHHhhc
Confidence 123467889999999 9999999863
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.4e-05 Score=62.27 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=56.6
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCC---------CCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL---------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
.+-+.++|.+|+..-+..|.+.+.+.-.++|++..+ +.++.+++.+..+..++... |..+.++|+++||
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP--WF~nssVIlFLNK 275 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP--WFQNSSVILFLNK 275 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc--cccCCceEEEech
Confidence 345779999999887888888887776666665443 22245778888888888765 4578899999999
Q ss_pred CCCCCC
Q 024474 186 TDKVTA 191 (267)
Q Consensus 186 ~Dl~~~ 191 (267)
.|+..+
T Consensus 276 kDlLEe 281 (359)
T KOG0085|consen 276 KDLLEE 281 (359)
T ss_pred hhhhhh
Confidence 998654
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.9e-06 Score=69.26 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=39.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc-ceeeeeccccceeEeecccCCCccccEEEEeCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
+..+++.|+|-||+||||+||+|....... +..+ +.+.....+..+. .+.|+|.||.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p-----GvT~smqeV~Ldk---~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP-----GVTRSMQEVKLDK---KIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCc-----cchhhhhheeccC---CceeccCCcee
Confidence 678899999999999999999998876411 1111 1112222222232 68999999964
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=63.90 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccc---eeeeecccc-------c------eeEeeccc--------C---C-Cc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQG---TVTSMEPNE-------D------TFVLHSES--------T---K-GK 114 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~---~~~~~~~~~-------~------~~~~~~~~--------~---~-~~ 114 (267)
+...|+++|++|+||||++..|...-...+ ...+.++.. . ..++.... + . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 346899999999999999998853211110 111111100 0 00000000 0 1 11
Q ss_pred cccEEEEeCCCCCCchhh----HHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+.|+||||....... ....+ ...+.+++|+|++.. ...+...+..+.. .+ .-=+++||.|-
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk---~~d~~~i~~~F~~------~~-idglI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---SKDMIEIITNFKD------IH-IDGIVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC---hHHHHHHHHHhcC------CC-CCEEEEEcccC
Confidence 368999999997543221 22333 235778999998754 2333333333221 11 22578999997
Q ss_pred CCC
Q 024474 189 VTA 191 (267)
Q Consensus 189 ~~~ 191 (267)
...
T Consensus 390 T~k 392 (436)
T PRK11889 390 TAS 392 (436)
T ss_pred CCC
Confidence 643
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.4e-05 Score=70.62 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=59.9
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCC---------CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
....+.++|++|+..-+..|..++.++++||||+++++. .+.+.+....+..+..+..+ .++|+++++|
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~--~~~~iil~ln 311 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF--KNTPIILFLN 311 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG--TTSEEEEEEE
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc--ccCceEEeee
Confidence 346899999999998899999999999999999998642 13466777888888876543 6899999999
Q ss_pred cCCCC
Q 024474 185 KTDKV 189 (267)
Q Consensus 185 K~Dl~ 189 (267)
|.|+.
T Consensus 312 K~D~f 316 (389)
T PF00503_consen 312 KIDLF 316 (389)
T ss_dssp -HHHH
T ss_pred cHHHH
Confidence 99964
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00099 Score=52.07 Aligned_cols=66 Identities=17% Similarity=0.060 Sum_probs=47.7
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
..+.+.++|||+... ......+..+|.+++++.++.. +.......+..+.. .+.|+.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~--~~~~~~~~~~~l~~------~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS--GLHDLERAVELVRH------FGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc--cHHHHHHHHHHHHH------cCCCEEEEEeCCCCC
Confidence 457899999997543 3445667889999999998863 46666555544332 456789999999965
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00035 Score=60.61 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+...++++|+.|+||||++..|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3466789999999999999998864
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00077 Score=63.56 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+..++++|+.|+||||++..|...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 457899999999999999998754
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00019 Score=55.56 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|++.|+||+|||||+++++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999865
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=65.37 Aligned_cols=23 Identities=52% Similarity=0.678 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
+...|+++|++|+||||++..|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45679999999999999988774
|
|
| >KOG4273 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00044 Score=55.86 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCC--CHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 64 STTIVLAGLSGS--GKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 64 ~~~i~i~G~~~~--GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+-++++|..|+ ||-+|+.+|....+.....++.......+++....+. ..+++.=.+-.+++.-.......-..
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyys---adi~lcishicde~~lpn~~~a~pl~ 80 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYS---ADINLCISHICDEKFLPNAEIAEPLQ 80 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeee---cceeEEeecccchhccCCccccccee
Confidence 457899999999 9999999998877643322221111111222111110 01222211211111101111122346
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHH
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEK 203 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~ 203 (267)
++++|||.+.. +.+..+..|+...--+ ..++ ++.++||.|..+.. ..++.+..+.+
T Consensus 81 a~vmvfdlse~-s~l~alqdwl~htdin----sfdi-llcignkvdrvphhlahdeyrrrl~k 137 (418)
T KOG4273|consen 81 AFVMVFDLSEK-SGLDALQDWLPHTDIN----SFDI-LLCIGNKVDRVPHHLAHDEYRRRLAK 137 (418)
T ss_pred eEEEEEeccch-hhhHHHHhhccccccc----cchh-heecccccccccchhhhhHHHHHHHh
Confidence 78999999986 6688888887532211 1222 57889999987654 34455554443
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00028 Score=56.60 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=32.3
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCC-CcEEEEEecCCCC
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK-IPVLICCNKTDKV 189 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~pvivv~nK~Dl~ 189 (267)
..+++|.+|.|+|++.. ++.. .+.+.++... .+ .++.+|+||.|-.
T Consensus 152 ~~~~vD~vivVvDpS~~--sl~t-aeri~~L~~e-----lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSYK--SLRT-AERIKELAEE-----LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCcHH--HHHH-HHHHHHHHHH-----hCCceEEEEEeeccch
Confidence 45679999999999873 3433 3344555543 44 7899999999953
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0001 Score=58.97 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=38.1
Q ss_pred ccEEEEeCCCCCCchh------hHHhhhccCCEEEEEEeCCC---CCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 116 KPVHLVDVPGHSRLRP------KLDEFLPQAAGIVFVVDALE---FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~------~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
....++|+|||-++-. ..-++++..|.-+.++...+ ..+.-..+...+..+..-. ....|-+=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl---~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML---HMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH---hhcccchhhhhHh
Confidence 4688999999875421 12245555665444443322 1111222222222222211 2567888899999
Q ss_pred CCCCC
Q 024474 187 DKVTA 191 (267)
Q Consensus 187 Dl~~~ 191 (267)
|+...
T Consensus 174 Dl~~~ 178 (290)
T KOG1533|consen 174 DLLKK 178 (290)
T ss_pred HHHHh
Confidence 98643
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00016 Score=63.42 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...++++|++||||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999998864
|
|
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00065 Score=56.38 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=73.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeee----------------ccccceeE-----------eeccc---
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM----------------EPNEDTFV-----------LHSES--- 110 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~----------------~~~~~~~~-----------~~~~~--- 110 (267)
..+.+--++.|.-|+|||||+|.++.+.-. ..+.-+ ...++... ...+.
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hg-KRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~g 132 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQHG-KRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNG 132 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCCC-ceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchH
Confidence 345667889999999999999998765421 111100 00011000 00000
Q ss_pred -------C-CCccccEEEEeCCCCCCchhhHHhhhc--------cCCEEEEEEeCCCCCCchHHH--HHHHHHHHhcCCC
Q 024474 111 -------T-KGKIKPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAA--SEYLYDILTNSTV 172 (267)
Q Consensus 111 -------~-~~~~~~~~l~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~--~~~l~~~~~~~~~ 172 (267)
+ ....+.-.++.|.|..+..+....+.. ..|+|+-|+|+-.....+.+. ...+.+...+..
T Consensus 133 vraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA- 211 (391)
T KOG2743|consen 133 VRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA- 211 (391)
T ss_pred HHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh-
Confidence 0 122345678999999988777665442 258999999985421001100 011111111100
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 024474 173 VKKKIPVLICCNKTDKVTAHTKEFIRKQME 202 (267)
Q Consensus 173 ~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~ 202 (267)
..+ -++.||.||........+++.+.
T Consensus 212 -~AD---~II~NKtDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 212 -LAD---RIIMNKTDLVSEEEVKKLRQRIR 237 (391)
T ss_pred -hhh---eeeeccccccCHHHHHHHHHHHH
Confidence 011 47899999998766666665554
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0014 Score=54.89 Aligned_cols=111 Identities=17% Similarity=0.278 Sum_probs=63.1
Q ss_pred HHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc------
Q 024474 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL------ 129 (267)
Q Consensus 56 ~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~------ 129 (267)
....+..+.+.++++|++|.|||++++++....... ..+. ...+.+..+.+|...+-
T Consensus 53 l~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-----~d~~------------~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 53 LEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-----SDED------------AERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred HhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-----CCCC------------CccccEEEEecCCCCChHHHHHH
Confidence 334566788999999999999999999998754211 1110 11134555555543321
Q ss_pred ------------------hhhHHhhhccCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 130 ------------------RPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 130 ------------------~~~~~~~~~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
.......++...+=++++|=-.. ..+.......+.-+.... ..-++|+|.||++
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~--NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG--NELQIPIVGVGTR 189 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh--hccCCCeEEeccH
Confidence 11223466777888889983210 012333333322222211 2478999999875
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00055 Score=57.27 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=60.5
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
-+.+.|-+++|+.+.++.-+...+..+|-..- ..++..++|+||+||........ +.......
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae------~~gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~--------- 138 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE------AGGIEPVIVLNKIDLLDDEEAAV--KELLREYE--------- 138 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHH------HcCCcEEEEEEccccCcchHHHH--HHHHHHHH---------
Confidence 34457788888888887445555555554332 26778889999999987655443 12221111
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
...+.++.+|+++++ +++|.++|..+
T Consensus 139 -----------------------~~gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 139 -----------------------DIGYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred -----------------------hCCeeEEEecCcCcccHHHHHHHhcCC
Confidence 345678999999999 99999988765
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=8.1e-05 Score=64.79 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+.+++++|.+|+|||||+|.|.+..
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhc
Confidence 34589999999999999999998754
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00046 Score=60.22 Aligned_cols=134 Identities=22% Similarity=0.218 Sum_probs=70.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHH--HhhcCCCCEEEEEcCCCCCHHHHHHHHHc----CCcccceee--eecc-----
Q 024474 33 QIPPTQLYIACAVLLLTTALLLLLQ--VFRRKKSTTIVLAGLSGSGKTVLFYQLRD----GSTHQGTVT--SMEP----- 99 (267)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~i~G~~~~GKSsLl~~l~~----~~~~~~~~~--~~~~----- 99 (267)
..+|....+......+..++..... .....+...|+++|..|+||||..-.|.. ......-+. ++.|
T Consensus 67 ~l~p~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQ 146 (451)
T COG0541 67 GLTPGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQ 146 (451)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHH
Confidence 3456666677766666665542000 11134566799999999999998876632 111100000 0000
Q ss_pred ------c-cce-eEee----ccc--------CCCccccEEEEeCCCCCCchhhHH------hhhccCCEEEEEEeCCCCC
Q 024474 100 ------N-EDT-FVLH----SES--------TKGKIKPVHLVDVPGHSRLRPKLD------EFLPQAAGIVFVVDALEFL 153 (267)
Q Consensus 100 ------~-~~~-~~~~----~~~--------~~~~~~~~~l~DtpG~~~~~~~~~------~~~~~~d~ii~v~d~~~~~ 153 (267)
+ ... |... ... .....+.+.|+||+|-.......- .-.-+.|=+++|+|+.-+
T Consensus 147 L~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G- 225 (451)
T COG0541 147 LKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG- 225 (451)
T ss_pred HHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc-
Confidence 0 000 1100 000 012235799999999655433322 123467899999999887
Q ss_pred CchHHHHHHHHHHH
Q 024474 154 PNCSAASEYLYDIL 167 (267)
Q Consensus 154 ~~~~~~~~~l~~~~ 167 (267)
+........+.+-+
T Consensus 226 QdA~~~A~aF~e~l 239 (451)
T COG0541 226 QDAVNTAKAFNEAL 239 (451)
T ss_pred hHHHHHHHHHhhhc
Confidence 33445555555543
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00024 Score=60.87 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=35.8
Q ss_pred CccccEEEEeCCCCCCchh-hHHh-----hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHh
Q 024474 113 GKIKPVHLVDVPGHSRLRP-KLDE-----FLPQAAGIVFVVDALEFLPNCSAASEYLYDILT 168 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~-~~~~-----~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~ 168 (267)
.+++.+.|+||.|...... +.++ -.-..|-+|||+|++-+ ...+....-+.+...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG-Qaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG-QAAEAQARAFKETVD 241 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc-HhHHHHHHHHHHhhc
Confidence 3457899999999543322 2222 12357999999999987 556666666665443
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00031 Score=62.33 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=25.2
Q ss_pred cccEEEEeCCCCCCchhh-HH---h--hhccCCEEEEEEeCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPK-LD---E--FLPQAAGIVFVVDALEF 152 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~-~~---~--~~~~~d~ii~v~d~~~~ 152 (267)
.+.+.++||||....... .. . ..-..|.+++|+|+..+
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 367999999996543222 11 1 12357889999998764
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0031 Score=44.87 Aligned_cols=97 Identities=14% Similarity=0.042 Sum_probs=57.8
Q ss_pred EcCCCCCHHHHHHHHHcCCcc----cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 70 AGLSGSGKTVLFYQLRDGSTH----QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 70 ~G~~~~GKSsLl~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
-+..|+||||+...|...-.. +.......++.. ..+.++|||+... ......+..+|.+++
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~-------------~D~IIiDtpp~~~--~~~~~~l~~aD~vlv 70 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG-------------DDYVVVDLGRSLD--EVSLAALDQADRVFL 70 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC-------------CCEEEEeCCCCcC--HHHHHHHHHcCeEEE
Confidence 345789999987766432211 111112222211 1689999998654 334457788999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
+++++.. +.......+..+.+... ....++.+|+|+
T Consensus 71 vv~~~~~--s~~~~~~~~~~l~~~~~--~~~~~~~lVvNr 106 (106)
T cd03111 71 VTQQDLP--SIRNAKRLLELLRVLDY--SLPAKIELVLNR 106 (106)
T ss_pred EecCChH--HHHHHHHHHHHHHHcCC--CCcCceEEEecC
Confidence 9998863 56666655555444211 113467788885
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0016 Score=58.00 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=18.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
+...|+++|++|+||||++-.|.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 35678999999999999766654
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0021 Score=44.27 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=56.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-HHhhhccCCEEEE
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIVF 145 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~~~d~ii~ 145 (267)
+++.|..|+||||+...+...-...+... ... + .+.++|+++....... .......+|.+++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v--------~~~-----~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~ 64 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRV--------LLI-----D----DYVLIDTPPGLGLLVLLCLLALLAADLVII 64 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE--------EEE-----C----CEEEEeCCCCccchhhhhhhhhhhCCEEEE
Confidence 67889999999999988765321100000 000 1 6889999987643321 1456678999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
+++.... +.........+..... .....+..++.|
T Consensus 65 v~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~vv~N 99 (99)
T cd01983 65 VTTPEAL--AVLGARRLTEVVLELA--IEGLRPVGVVVN 99 (99)
T ss_pred ecCCchh--hHHHHHHHHHHHHHhh--ccCCceEEEEeC
Confidence 9998764 3444444322222211 124455566554
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0018 Score=54.05 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc---ceeeeeccc-------------cceeEeeccc-----------C-CCc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEPN-------------EDTFVLHSES-----------T-KGK 114 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~---~~~~~~~~~-------------~~~~~~~~~~-----------~-~~~ 114 (267)
+..+++++|++|+||||++..+...-... ....+.++. ...+...... . ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 45799999999999999998875431110 011111110 0001111000 0 112
Q ss_pred cccEEEEeCCCCCCchhh----HHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+.++||||....... +..++ ...+-+++|+|++.. ...+...+..+.. . .+-=+++||.|.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~---~~d~~~~~~~f~~------~-~~~~~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---SKDMIEIITNFKD------I-HIDGIVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC---HHHHHHHHHHhCC------C-CCCEEEEEeecC
Confidence 468999999997643222 22222 245678999998764 3334444433321 1 123588999997
Q ss_pred CCC
Q 024474 189 VTA 191 (267)
Q Consensus 189 ~~~ 191 (267)
...
T Consensus 224 t~~ 226 (270)
T PRK06731 224 TAS 226 (270)
T ss_pred CCC
Confidence 653
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00036 Score=68.41 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=63.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceee---eeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT---SMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKL 133 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~ 133 (267)
+=.+|+|++|+||||++..-- .+|+-.... .... .++..+.... . -.-.++||+|-.. -...|
T Consensus 126 PWy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~-~gT~~cdwwf-~---deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAG-PGTRNCDWWF-T---DEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhccc-ccCcchhhhccccccC-CCCcccCccc-c---cceEEEcCCcceecccCcchhhHHHH
Confidence 447899999999999987432 122111110 0111 1111111111 1 2467999999321 12234
Q ss_pred Hhh---------hccCCEEEEEEeCCCCC-CchHH-------HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 134 DEF---------LPQAAGIVFVVDALEFL-PNCSA-------ASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 134 ~~~---------~~~~d~ii~v~d~~~~~-~~~~~-------~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
..+ .+-.++||+.+|+.+-. .+-.+ +...+.++... .....||.+++||.|+..
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t---L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET---LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh---hccCCceEEEEecccccc
Confidence 332 24579999999986521 11111 22223333332 237899999999999875
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0039 Score=54.53 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...+-+.++||..+|||||+.++..
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHH
Confidence 4557899999999999999999843
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00038 Score=62.52 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++|+||||++..|..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999998875
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998654
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0036 Score=54.97 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCc-------ccceeeeeccc-----------c--ceeEeecccC---------CCc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGST-------HQGTVTSMEPN-----------E--DTFVLHSEST---------KGK 114 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~-------~~~~~~~~~~~-----------~--~~~~~~~~~~---------~~~ 114 (267)
...++++|++|+||||.+..|...-. ..-...+.++. . ...++..... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45799999999999999988753210 00011111110 0 0011111000 113
Q ss_pred cccEEEEeCCCCCCchh----hHHhhhccC--C-EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 115 IKPVHLVDVPGHSRLRP----KLDEFLPQA--A-GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~----~~~~~~~~~--d-~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.+.+.++||+|...... ....++... + -+++|+|++.. ...+.+.+..... --+-=+++||.|
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~---~~~~~~~~~~~~~-------~~~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK---TSDVKEIFHQFSP-------FSYKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC---HHHHHHHHHHhcC-------CCCCEEEEEecc
Confidence 46899999999764322 122333322 3 58899999875 3344444433321 112358899999
Q ss_pred CCCC
Q 024474 188 KVTA 191 (267)
Q Consensus 188 l~~~ 191 (267)
-...
T Consensus 324 et~~ 327 (388)
T PRK12723 324 ETTC 327 (388)
T ss_pred CCCc
Confidence 7543
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0019 Score=45.53 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=49.6
Q ss_pred EEEEc-CCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 67 IVLAG-LSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 67 i~i~G-~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
|++.| ..|+||||+...+...-...+. ...... .+.. +.+.++|+|+... ......+..+|.+++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~--------~vl~~d---~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv 67 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGK--------RVLLID---LDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLI 67 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCC--------cEEEEe---CCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEE
Confidence 55666 5799999998766542210000 001110 1111 5789999999654 334477788999999
Q ss_pred EEeCCCCCCchHHHHHHHH
Q 024474 146 VVDALEFLPNCSAASEYLY 164 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~ 164 (267)
+++.+.. ++......+.
T Consensus 68 ~~~~~~~--s~~~~~~~~~ 84 (104)
T cd02042 68 PVQPSPL--DLDGLEKLLE 84 (104)
T ss_pred eccCCHH--HHHHHHHHHH
Confidence 9988763 4555555544
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00067 Score=57.33 Aligned_cols=117 Identities=20% Similarity=0.199 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeec------------------cccceeEeec-------ccC-----
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSME------------------PNEDTFVLHS-------EST----- 111 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~-------~~~----- 111 (267)
.+..-++++|-.|+||||-+-+|...-...+...-+. ..+..+.... +.+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 4577899999999999999887743211111100000 0001111100 000
Q ss_pred -CCccccEEEEeCCCCCCchhh-------HHhhhccCC-----EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc
Q 024474 112 -KGKIKPVHLVDVPGHSRLRPK-------LDEFLPQAA-----GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 178 (267)
Q Consensus 112 -~~~~~~~~l~DtpG~~~~~~~-------~~~~~~~~d-----~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p 178 (267)
...++.+.++||+|....... ..+.+...+ =+++++|++.+.+.+ ...+.+.+...-
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal-~QAk~F~eav~l--------- 286 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL-SQAKIFNEAVGL--------- 286 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH-HHHHHHHHhcCC---------
Confidence 123478999999995533221 112333333 388888999884444 344445555432
Q ss_pred EEEEEecCCC
Q 024474 179 VLICCNKTDK 188 (267)
Q Consensus 179 vivv~nK~Dl 188 (267)
-=+++||+|-
T Consensus 287 ~GiIlTKlDg 296 (340)
T COG0552 287 DGIILTKLDG 296 (340)
T ss_pred ceEEEEeccc
Confidence 1478999994
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0092 Score=46.31 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=43.9
Q ss_pred cEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 117 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.+.++|||+... ......+..+|.+|++++++.. ++......+..+... ......+|+|+.|-..
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~~~~~-----~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEIS--SLRDADRVKGLLEAL-----GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcc--hHHHHHHHHHHHHHc-----CCceEEEEEeCCcccc
Confidence 689999998654 2345567889999999998864 455555544433321 2235679999998653
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00029 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
|
... |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00042 Score=53.89 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=28.7
Q ss_pred CEEEEEEeCCCCCCch-HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 141 AGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
|++++|+|+..+..+. ..+.+.+. +. ..+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~--l~-----~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL--QA-----GGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH--hc-----cCCCCEEEEEehhhcCCH
Confidence 7899999998752222 22222211 22 256899999999999643
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.011 Score=43.67 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
....+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998753
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00038 Score=53.93 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998754
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00094 Score=42.28 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...+|.|+.|+||||++.++.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998753
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00058 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00058 Score=51.12 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
|+++|+|||||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999853
|
... |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00064 Score=52.86 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+|+|+|++|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998653
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00071 Score=54.93 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST 89 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~ 89 (267)
.++--++++|++|||||||++.+.+-..
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455799999999999999999987543
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0012 Score=56.75 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=52.7
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCC-chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~ 206 (267)
.|.......+..+|+||.|+|+.++.. ...++.+++.+. ..+...|+|+||+||.+.+..+.+..++.+...
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-------~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-------HGNKKLILVLNKIDLVPREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-------cCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence 355556677788999999999998632 333444444321 245889999999999988888888777776554
Q ss_pred HH
Q 024474 207 KL 208 (267)
Q Consensus 207 ~~ 208 (267)
.+
T Consensus 208 tv 209 (435)
T KOG2484|consen 208 TV 209 (435)
T ss_pred cc
Confidence 43
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00087 Score=43.66 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00085 Score=49.87 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++|+|+.|+|||||++.|.+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 356689999999999999999998864
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0027 Score=56.02 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=47.0
Q ss_pred ccccEEEEeCCCCCCchhh----HHhh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 114 KIKPVHLVDVPGHSRLRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.++.+.++||+|...-... ...+ ....|.|++|-.+--+.++.+++..+-..+..... +..-=-++++|+|
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~---~r~id~~~ltk~d 541 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHST---PRLIDGILLTKFD 541 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCC---ccccceEEEEecc
Confidence 4578999999996532222 1122 35689999998876665677777766555444321 1122357899999
Q ss_pred CCCC
Q 024474 188 KVTA 191 (267)
Q Consensus 188 l~~~ 191 (267)
-.++
T Consensus 542 tv~d 545 (587)
T KOG0781|consen 542 TVDD 545 (587)
T ss_pred chhh
Confidence 7643
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00066 Score=52.26 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.022 Score=46.46 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=26.3
Q ss_pred HHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 56 ~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+.....+..++++-|+.|+||||++..++..
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 33444567789999999999999999998874
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0013 Score=48.37 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGST 89 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~ 89 (267)
...++++|++|+|||+++..+...-.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 35799999999999999999987643
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.024 Score=45.34 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=41.6
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHH---HHHHHHHHhcCCCCCCCCc-EEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAA---SEYLYDILTNSTVVKKKIP-VLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl 188 (267)
.+.+.++||||.. .......+..+|.+|+++.++.. ++... ..++.+.... ..+.| ..++.|+.+-
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPF--DIWAAPDLVELIKARQEV----TDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChh--hHHHHHHHHHHHHHHHhh----CCCCceEEEEEeccCC
Confidence 3689999999964 45677788899999999998763 34333 3333332111 13344 4566677653
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.013 Score=53.41 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|++|+||||+++.+...
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999774
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0022 Score=56.98 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=43.2
Q ss_pred hhhccCCEEEEEEeCCCCCC-chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 024474 135 EFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~ 202 (267)
+.+..+|+||.++|+.++.= ....+..+..++. ..+..++++||+||........+.+++.
T Consensus 170 RVlErSDivvqIVDARnPllfr~~dLe~Yvke~d-------~~K~~~LLvNKaDLl~~~qr~aWa~YF~ 231 (562)
T KOG1424|consen 170 RVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-------PSKANVLLVNKADLLPPEQRVAWAEYFR 231 (562)
T ss_pred HHHhhcceEEEEeecCCccccCChhHHHHHhccc-------cccceEEEEehhhcCCHHHHHHHHHHHH
Confidence 46788999999999998621 1223444444432 4466899999999998877777776665
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0023 Score=50.87 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++||+|||||||+..+.+-+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 456689999999999999999987654
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0023 Score=49.62 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH 90 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~ 90 (267)
..+-.++|+|++|+|||||+|-+.+=..+
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCC
Confidence 45568999999999999999998875443
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0013 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0042 Score=48.96 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++++|++|+||||+++.|++.-
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999988753
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0027 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++--++|+|++|||||||+|.+-+-.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455579999999999999999887644
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0042 Score=50.67 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..-++|.|++|+|||||++.|.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56678999999999999999988764
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0013 Score=52.85 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=23.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++++..|+|+|++|||||||++.|.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999763
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0023 Score=49.73 Aligned_cols=26 Identities=42% Similarity=0.562 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++.-+++.||+|+||||+++.|....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 45579999999999999999998865
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0016 Score=50.89 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0025 Score=50.28 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++.-|+++|++|||||||+++|....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 44569999999999999999998753
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0017 Score=51.11 Aligned_cols=23 Identities=48% Similarity=0.577 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..++++|++|+|||||++.|.+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999765
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0019 Score=50.40 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++-.++++|+.|+|||||++.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 5677899999999999999998863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0019 Score=51.88 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45567889999999999999999754
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0017 Score=48.50 Aligned_cols=21 Identities=48% Similarity=0.714 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0018 Score=47.34 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
|
... |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.002 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|+++|++||||||+.+.|..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0017 Score=47.64 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998874
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0021 Score=50.27 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 466689999999999999999998853
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0074 Score=51.87 Aligned_cols=73 Identities=29% Similarity=0.341 Sum_probs=47.6
Q ss_pred EEeCCCCC-CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHH
Q 024474 120 LVDVPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIR 198 (267)
Q Consensus 120 l~DtpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~ 198 (267)
+-+.||+. ++.....+.+..+|+++-|+|+.++..+... .+.++. .+.|.++|+||+||.+....+.+.
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~---~l~~~v-------~~k~~i~vlNK~DL~~~~~~~~W~ 83 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP---ELERIV-------KEKPKLLVLNKADLAPKEVTKKWK 83 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc---cHHHHH-------ccCCcEEEEehhhcCCHHHHHHHH
Confidence 44457765 4455677888999999999999987433322 222332 445569999999998765544444
Q ss_pred HHHH
Q 024474 199 KQME 202 (267)
Q Consensus 199 ~~l~ 202 (267)
+.+.
T Consensus 84 ~~~~ 87 (322)
T COG1161 84 KYFK 87 (322)
T ss_pred HHHH
Confidence 4333
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0017 Score=48.39 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..++|+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5678999999999999999999874
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.002 Score=48.34 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+.|+|+|+.|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
|
|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.037 Score=42.72 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=43.9
Q ss_pred ccccEEEEeCCCCCCchhhHHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
..+.+.++|||+... ......+ ..+|.+++|..+.. .+.......+..+.+ .+.+ .-+|.|+.+-.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~--~s~~~~~~~~~~l~~------~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQE--VALDDVRKAIDMFKK------VNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCch--hhHHHHHHHHHHHHh------cCCCeEEEEEcCCccc
Confidence 357899999998643 2222333 57899999998876 356666666655554 2334 45789999853
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0022 Score=50.07 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
..++++|++|||||||++.|....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 368999999999999999998753
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0021 Score=50.46 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0023 Score=49.94 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...|+|.|++|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999864
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.027 Score=48.35 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+.+.+++.|++|+||||++..+...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999988764
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0021 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+|+++|+||+||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0059 Score=51.09 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
....+++.|++||||||+++.++..-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cceEEEEECCCccccchHHHHHhhhc
Confidence 45689999999999999999998643
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0025 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++--++++||.|||||||++.+.+-
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45567999999999999999999873
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0023 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++ .++++|++|+|||||++.+.+-
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 46 8999999999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0026 Score=51.35 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|+|||||++.+.+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466689999999999999999998854
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0026 Score=51.39 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 466689999999999999999998854
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0023 Score=51.38 Aligned_cols=26 Identities=42% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+...|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998764
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0027 Score=45.02 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
.+-.++++|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 44579999999999999999986
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0025 Score=49.46 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+|+++|++|+||||+...|..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998865
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0027 Score=51.00 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998853
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0024 Score=49.82 Aligned_cols=27 Identities=41% Similarity=0.548 Sum_probs=17.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
......++|.|++|+|||+|++++...
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999987653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0028 Score=50.75 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998854
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0029 Score=49.94 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998753
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0029 Score=50.58 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+++|++|||||||++.|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35668999999999999999999875
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0029 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998854
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 267 | ||||
| 2fh5_B | 214 | The Structure Of The Mammalian Srp Receptor Length | 2e-23 | ||
| 1nrj_B | 218 | Signal Recognition Particle Receptor Beta-Subunit I | 7e-12 | ||
| 2ged_A | 193 | Signal Recognition Particle Receptor Beta-subunit I | 9e-11 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 2e-08 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 5e-08 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 5e-08 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 6e-07 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 8e-06 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 4e-05 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 4e-05 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 5e-05 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 6e-05 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 6e-05 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 8e-05 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 9e-05 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 1e-04 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 1e-04 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 1e-04 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 1e-04 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 2e-04 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 2e-04 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-04 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 3e-04 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 3e-04 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 3e-04 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 3e-04 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 3e-04 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 4e-04 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 4e-04 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 5e-04 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 6e-04 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 6e-04 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 7e-04 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 7e-04 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 7e-04 |
| >pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214 | Back alignment and structure |
|
| >pdb|1NRJ|B Chain B, Signal Recognition Particle Receptor Beta-Subunit In Complex With The Srx Domain From The Alpha-Subunit Length = 218 | Back alignment and structure |
|
| >pdb|2GED|A Chain A, Signal Recognition Particle Receptor Beta-subunit In Nucleotide-free Dimerized Form Length = 193 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 6e-66
Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 9/208 (4%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
R+ ++ GL SGKT+LF +L G ++ T TS+ + + +++ + +
Sbjct: 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDSSAIYKVNNN----RGNSLT 57
Query: 120 LVDVPGHSRLRPKL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 178
L+D+PGH LR +L D F A +VFVVD+ F +E+LY +L +S +K
Sbjct: 58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS 117
Query: 179 VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA---DVTNDFTLGIPGQAFSF 235
+LI CNK D A + + I++Q+EKE++ LR +RSA T LG G+ F F
Sbjct: 118 LLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEF 177
Query: 236 SQCHNKVSVAEASGLTGEISQVEQFIRE 263
SQ KV E S G I++
Sbjct: 178 SQLPLKVEFLECSAKGGRGDTGSADIQD 205
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 2e-65
Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 23/220 (10%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
++ +I++AG SGKT L L S TV S EP + V
Sbjct: 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLS--------AADYDGSGVT 58
Query: 120 LVDVPGHSRLRPKLDEFLPQAA----GIVFVVDALEFLPNCSAASEYLYDILT-NSTVVK 174
LVD PGH +LR KL ++L A G++F+VD+ + +E+L DIL+ + +
Sbjct: 59 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE 118
Query: 175 KKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV---------SEADVTNDFT 225
I +LI CNK++ TA I+ +E EI K+ R E N
Sbjct: 119 NGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 178
Query: 226 LGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 265
+ F F+ V E S +ISQ ++I E++
Sbjct: 179 VLQSTDGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 218
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 1e-49
Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 14/158 (8%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
+I++AG SGKT L L S TV S EP + V
Sbjct: 44 GGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLS--------AADYDGSGVT 94
Query: 120 LVDVPGHSRLRPKLDEFLPQAA----GIVFVVDALEFLPNCSAASEYLYDILT-NSTVVK 174
LVD PGH +LR KL ++L A G++F+VD+ + +E+L DIL+ + +
Sbjct: 95 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE 154
Query: 175 KKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212
I +LI CNK++ TA I+ +E EI K+ R
Sbjct: 155 NGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 192
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 3e-19
Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 13/162 (8%)
Query: 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSMEPNEDTFV---- 105
+ + R+ + IV G SGKT + G + S+ ++ +
Sbjct: 2 SMSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDF 61
Query: 106 --LHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYL 163
L KG HL VPG L GIVFV D+ A +E +
Sbjct: 62 LPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP--NRLRANAESM 119
Query: 164 YDILTNSTVVK---KKIPVLICCNKTDKVTAHTKEFIRKQME 202
++ N +P++I NK D A E +R ++
Sbjct: 120 RNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD 161
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG 113
+L + KK+ +V GL +GKT L + L+D Q V ++ P +
Sbjct: 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEEL--------- 64
Query: 114 KIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTN 169
I + D+ GH + R +LP GIVF+VD E L L ++T+
Sbjct: 65 TIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEE---LDSLMTD 121
Query: 170 STVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201
T+ +P+LI NK D+ A ++E +R+
Sbjct: 122 ETI--ANVPILILGNKIDRPEAISEERLREMF 151
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 4e-12
Identities = 25/152 (16%), Positives = 55/152 (36%), Gaps = 17/152 (11%)
Query: 61 RKKSTTIVLAGLSGSGKT----VLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIK 116
+ I+L GL SGK+ V+F+++ T T + +D S +
Sbjct: 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLEST-NKIYKDDI-----SNSSFVN 70
Query: 117 PVHLVDVPGHSRLRPK---LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV 173
+ D PG + +++V+DA + A L+ ++ + V
Sbjct: 71 -FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME---ALTRLHITVSKAYKV 126
Query: 174 KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205
+ + +K D ++ K ++ + +
Sbjct: 127 NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA 158
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 1e-11
Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 19/153 (12%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG 113
+L + K ++ GL +GKT L + L++ + P +
Sbjct: 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEEL--------- 62
Query: 114 KIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTN 169
I + D+ GH + R ++ P+ GIVF+VDA E A L +
Sbjct: 63 AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFD---EARVELDALFNI 119
Query: 170 STVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
+ + K +P +I NK D A ++ +R +
Sbjct: 120 AEL--KDVPFVILGNKIDAPNAVSEAELRSALG 150
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-11
Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 15/153 (9%)
Query: 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST 111
L + + +++ GL +GKT + YQ T ++ N +
Sbjct: 4 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEI------- 55
Query: 112 KGKIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTN 169
I + D+ G LR + + ++ VVD+ + E LY +L +
Sbjct: 56 --VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE-LYKMLAH 112
Query: 170 STVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
+ +K +LI NK D T I + ++
Sbjct: 113 EDL--RKAGLLIFANKQDVKECMTVAEISQFLK 143
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-11
Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG 113
+ +++ K I++ GL G+GKT + Y+L+ G T ++ N +T
Sbjct: 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVETL--------- 57
Query: 114 KIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNST 171
K + L D+ G + +RP + A ++FVVD+ + +A+ E L+ +L
Sbjct: 58 SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE-LHLMLQEEE 116
Query: 172 VVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
+ + +L+ NK D+ A + + K++
Sbjct: 117 L--QDAALLVFANKQDQPGALSASEVSKELN 145
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-11
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 15/145 (10%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
R + +++ GL +GKT + YQ T ++ N + I
Sbjct: 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEI---------VINNTR 66
Query: 120 LV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 177
+ D+ G LR + + ++ VVD+ + E LY +L + + +K
Sbjct: 67 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE-LYKMLAHEDL--RKA 123
Query: 178 PVLICCNKTDKVTAHTKEFIRKQME 202
+LI NK D T I + ++
Sbjct: 124 GLLIFANKQDVKECMTVAEISQFLK 148
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 7e-11
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 15/158 (9%)
Query: 47 LLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVL 106
+L L + + +++ GL +GKT + Y+L G TV ++ N +T
Sbjct: 5 AWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETL-- 61
Query: 107 HSESTKGKIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLY 164
+ K + D+ G + +RP + +++VVD+ + A E LY
Sbjct: 62 -------QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHE-LY 113
Query: 165 DILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
+L + +K +LI NK D A ++ I +Q+
Sbjct: 114 ALLDEDEL--RKSLLLIFANKQDLPDAASEAEIAEQLG 149
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 23/151 (15%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG------ 113
R K ++ GL SGKT + +L+ + + P T G
Sbjct: 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL---P-----------TIGFSIEKF 62
Query: 114 KIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNST 171
K + D+ G R R + + + I+FV+D+ + L A E L +L +
Sbjct: 63 KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEE-LDTLLNHPD 121
Query: 172 VVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
+ ++IP+L NK D A T + + +
Sbjct: 122 IKHRRIPILFFANKMDLRDAVTSVKVSQLLC 152
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 2e-10
Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 18/151 (11%)
Query: 67 IVLAGLSGSGKT----VLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVD 122
++L G SGSGK+ ++F T + T G + ++L D
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATI------DVEHSHLRFLGNMT-LNLWD 58
Query: 123 VPGHSR-----LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 177
G + D ++ V D E L
Sbjct: 59 CGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVES--TEVLKDIEIFAKALKQLRKYSPDA 116
Query: 178 PVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208
+ + +K D V +E + + M K + +
Sbjct: 117 KIFVLLHKMDLVQLDKREELFQIMMKNLSET 147
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-10
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 23/154 (14%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP----NEDTFVLHSES 110
L KK I++ GL +GKT + Y+L G + + P N +T
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETV------ 68
Query: 111 TKGKIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILT 168
+ K + DV G ++RP + G++FVVD+ + +A E L +L
Sbjct: 69 ---EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADE-LQKMLQ 124
Query: 169 NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
+ + +L+ NK D A + ++
Sbjct: 125 EDEL--RDAVLLVFANKQDMPNAMPVSELTDKLG 156
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-10
Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 27/157 (17%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG 113
+L ++ ++++ +++ GL +GKT + + + V ++ P T G
Sbjct: 8 ILKKMKQKERELRLLMLGLDNAGKTTILKKF-----NGEDVDTISP-----------TLG 51
Query: 114 ------KIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYD 165
+ + L DV G LR + G+++VVD+ + E L
Sbjct: 52 FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE-LQS 110
Query: 166 ILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
+L + +LI NK D A + I++ +E
Sbjct: 111 LLVEERL--AGATLLIFANKQDLPGALSCNAIQEALE 145
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-10
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST 111
L K+ + L GL SGKT + G ++ + ++ N
Sbjct: 10 HSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI------- 62
Query: 112 KGKIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTN 169
V + D+ G R R + + + IV++VDA + ++ +E L+++L
Sbjct: 63 --TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNE-LHNLLDK 119
Query: 170 STVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
+ + IPVL+ NK D A ++ + ++M
Sbjct: 120 PQL--QGIPVLVLGNKRDLPGALDEKELIEKMN 150
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-10
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 28/159 (17%)
Query: 55 LLQVFRR-----KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP----NEDTFV 105
LL + R+ + I+L GL +GKT L QL ++ + P N +
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQL-----ASEDISHITPTQGFNIKSV- 55
Query: 106 LHSESTKGKIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYL 163
+ + L D+ G ++RP + +++V+D+ + E L
Sbjct: 56 --------QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQE-L 106
Query: 164 YDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
++L + +PVLI NK D +TA I + +
Sbjct: 107 TELLEEEKL--SCVPVLIFANKQDLLTAAPASEIAEGLN 143
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-09
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
+ I++ GL G+GKT + Y+L+ G T+ ++ N +T K +
Sbjct: 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETV---------TYKNLKFQ 54
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ G + +RP + +++VVD+ + + SE L +L + +K +
Sbjct: 55 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSE-LVAMLEEEEL--RKAIL 111
Query: 180 LICCNKTDKVTAHTKEFIRKQME 202
++ NK D A T + +
Sbjct: 112 VVFANKQDMEQAMTSSEMANSLG 134
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 4e-09
Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 21/149 (14%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHS-----ESTKGKIKPVHLV 121
++L G+ GK+ + V DT L S + + ++
Sbjct: 2 VLLMGVRRCGKS----------SICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVM 51
Query: 122 DVPGHSRLR---PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 178
++PG + +V+V+D+ + N A L I+ + V I
Sbjct: 52 ELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYIN---AITNLAMIIEYAYKVNPSIN 108
Query: 179 VLICCNKTDKVTAHTKEFIRKQMEKEIDK 207
+ + +K D ++ K ++ + + +
Sbjct: 109 IEVLIHKVDGLSEDFKVDAQRDIMQRTGE 137
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 4e-09
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 23/142 (16%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP----NEDTFVLHSESTKGKIKPVHLV- 121
I++ GL +GKT + Y+L G + + P N +T + K +
Sbjct: 3 ILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETV---------EYKNISFTV 48
Query: 122 -DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 180
DV G ++RP + G++FVVD+ + A E L +L + + +L
Sbjct: 49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREE-LMRMLAEDEL--RDAVLL 105
Query: 181 ICCNKTDKVTAHTKEFIRKQME 202
+ NK D A I ++
Sbjct: 106 VFANKQDLPNAMNAAEITDKLG 127
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 4e-08
Identities = 53/297 (17%), Positives = 88/297 (29%), Gaps = 102/297 (34%)
Query: 4 FVMWKL-PEGMEQWKKELEE-------WLNRGIEFINQIP--PTQLYIAC---------- 43
+ W L + E +K +EE +L I+ + P T++YI
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 44 ----------AVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQ-LRDGSTHQG 92
L L ALL L + + +++ G+ GSGKT +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL------RPAKNVLIDGVLGSGKTWVALDVCLSYK---- 175
Query: 93 TVTSMEPNEDTF---VLHSESTKGKIKPV----HLVDVPGHSRLRPKLDEFLPQAAGIVF 145
V + F + + S + ++ + + +D SR + L I
Sbjct: 176 -VQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR----IHS 229
Query: 146 VVDALEFL------PNCSAASEYLYDILTN---STVVKK-----KIPVLICCNK--TDKV 189
+ L L NC +L N + KI +L K TD +
Sbjct: 230 IQAELRRLLKSKPYENC-------LLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFL 281
Query: 190 TAH------------------TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGI 228
+A K + K ++ L E TN L I
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------REVLTTNPRRLSI 332
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 9e-07
Identities = 46/250 (18%), Positives = 81/250 (32%), Gaps = 61/250 (24%)
Query: 14 EQWKKELEEWLNRGIE-FINQIPPT---QLYIACAVL----LLTTALLLLLQVFRRKKST 65
+ WK + L IE +N + P +++ +V + T LL L+ K
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 66 TIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSE-----------STK 112
+V+ L +++ Q ++ S + E+ + LH +
Sbjct: 405 MVVVNKL--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 113 GKIKPV-----------HL--VDVPGHSRLRPK--LD-EFLPQ-----------AAGIVF 145
I P HL ++ P L LD FL Q + I+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 146 VVDALEF-----LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFI 197
+ L+F N + IL + K LIC TD + E I
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 198 RKQMEKEIDK 207
++ K++ +
Sbjct: 580 FEEAHKQVQR 589
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 4e-05
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 24/100 (24%)
Query: 120 LVDVPG-HSRLRPKLDEFLPQAAG--------IVFVVDALEFLPNCSAASEYLYDILTNS 170
VD PG H + ++ + +AA ++FVV+ + P E + + L
Sbjct: 60 YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP----DDEMVLNKLREG 115
Query: 171 TVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210
K PV++ NK D V + + + L +
Sbjct: 116 -----KAPVILAVNKVDNVQE------KADLLPHLQFLAS 144
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-05
Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 27/152 (17%)
Query: 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG----- 113
KK I++ GL +GKT + Y+L G + + P T G
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKL-----KLGEIVTTIP-----------TIGFNVET 203
Query: 114 -KIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNS 170
+ K + DV G ++RP + G++FVVD+ + A E L +L
Sbjct: 204 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREE-LMRMLAED 262
Query: 171 TVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202
+ + +L+ NK D A I ++
Sbjct: 263 EL--RDAVLLVFANKQDLPNAMNAAEITDKLG 292
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 5e-04
Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 17/162 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGS------THQGTVTSMEPNEDTFVLHSESTKGKIKPVHL 120
+ L G +GKT L QL + G + + L ++ + H
Sbjct: 44 VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL-FHF 102
Query: 121 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 180
D G + F+ +++ + ++D+ S +L I K PV+
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----SNKHYWLRHIEKYG----GKSPVI 154
Query: 181 ICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222
+ NK D+ + +K++ + + +S +
Sbjct: 155 VVMNKIDEN--PSYNIEQKKINERFPAIENRFHRISCKNGDG 194
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 267 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.95 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.95 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.95 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.95 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.95 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.95 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.95 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.95 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.95 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.95 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.95 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.95 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.95 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.95 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.95 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.95 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.95 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.95 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.95 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.95 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.95 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.95 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.94 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.94 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.94 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.94 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.94 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.94 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.94 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.94 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.94 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.94 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.94 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.94 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.94 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.94 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.94 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.94 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.94 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.94 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.94 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.94 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.94 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.94 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.94 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.94 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.94 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.94 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.94 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.94 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.94 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.94 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.94 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.94 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.94 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.94 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.94 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.94 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.94 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.94 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.94 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.94 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.94 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.94 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.94 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.94 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.94 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.94 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.94 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.94 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.94 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.93 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.93 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.93 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.93 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.93 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.93 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.93 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.93 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.93 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.93 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.93 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.93 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.93 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.93 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.93 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.93 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.93 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.93 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.93 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.93 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.93 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.92 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.92 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.92 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.92 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.92 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.92 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.92 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.91 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.91 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.91 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.85 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.91 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.91 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.91 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.9 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.9 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.9 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.9 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.9 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.9 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.89 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.89 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.89 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.89 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.89 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.89 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.89 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.89 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.89 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.88 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.88 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.88 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.87 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.87 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.87 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.87 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.87 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.86 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.85 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.85 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.85 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.85 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.85 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.85 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.85 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.84 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.84 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.84 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.84 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.84 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.84 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.84 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.83 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.83 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.83 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.83 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.82 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.82 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.82 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.82 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.81 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.81 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.81 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.81 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.81 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.81 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.8 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.8 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.79 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.79 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.79 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.79 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.79 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.78 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.78 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.76 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.75 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.75 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.75 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.75 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.75 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.74 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.74 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.73 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.73 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.73 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.72 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.71 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.7 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.69 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.68 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.67 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.67 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.67 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.66 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.65 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.64 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.64 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.63 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.63 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.62 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.6 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.58 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.57 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.56 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.56 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.54 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.54 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.54 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.52 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.5 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.48 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.47 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.45 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.45 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.24 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.21 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.09 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.05 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.02 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.99 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.98 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.96 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.85 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.7 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.68 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.66 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.63 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.48 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.47 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.44 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.38 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.31 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.22 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.12 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.11 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.95 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.95 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.84 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.78 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.75 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.71 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.55 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.54 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.52 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.52 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.5 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.47 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.42 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.37 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.32 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.3 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.21 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.2 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.19 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.18 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.18 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.14 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.02 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.01 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 96.96 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.96 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.94 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.93 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 96.92 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 96.91 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 96.9 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 96.9 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.9 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.89 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.87 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.87 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.84 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.77 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.77 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.76 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.76 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 96.75 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.74 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 96.74 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.71 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.69 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.68 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.67 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 96.65 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 96.64 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 96.64 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.63 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.61 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.59 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.59 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.58 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 96.58 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 96.57 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 96.55 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 96.55 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.55 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 96.55 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 96.55 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 96.54 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 96.54 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.53 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.53 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 96.52 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 96.52 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 96.52 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 96.51 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 96.5 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.5 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 96.5 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.49 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 96.48 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.48 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 96.47 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.47 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.47 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 96.47 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.46 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 96.46 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 96.45 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.45 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.44 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 96.44 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.44 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.43 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 96.43 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.42 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.42 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 96.42 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.41 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.41 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.39 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.38 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.38 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.37 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.37 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.37 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.35 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.33 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.33 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.33 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.3 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.29 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.29 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.28 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.28 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.28 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.27 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.27 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.27 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.26 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.26 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.25 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.25 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.24 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.24 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.23 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.22 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.2 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.19 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.19 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 96.17 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.17 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.16 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.15 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.14 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.13 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.12 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.12 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.12 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.12 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.11 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.1 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.1 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.09 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.08 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.07 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.06 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.06 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.06 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.06 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.03 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.03 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.03 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.02 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.02 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.0 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 95.98 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 95.97 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 95.97 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 95.95 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 95.94 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.94 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.93 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.91 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.91 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 95.91 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 95.89 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.86 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.85 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.85 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 95.85 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.84 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.83 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 95.83 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.82 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.82 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.81 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.81 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 95.79 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.77 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 95.77 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 95.76 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 95.76 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.75 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 95.73 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 95.72 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.72 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.71 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.68 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 95.65 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.65 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.64 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 95.64 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.63 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 95.61 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 95.6 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.59 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 95.59 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.58 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 95.58 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.52 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.5 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.5 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.49 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.49 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.47 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 95.46 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.45 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.45 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.44 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.44 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.41 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.36 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 95.36 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.33 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 95.3 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 95.29 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.28 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.27 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.27 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.26 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 95.26 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.24 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.19 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 95.18 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 95.14 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 95.12 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 95.12 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.09 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.08 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 95.06 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 95.02 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.01 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 95.01 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 95.0 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.0 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 94.99 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 94.96 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 94.95 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 94.93 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 94.91 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.89 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.89 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 94.87 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 94.81 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 94.81 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 94.8 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.8 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 94.79 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.77 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 94.73 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.71 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 94.71 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.71 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.69 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.68 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 94.68 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.66 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.65 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.62 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 94.61 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.58 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 94.57 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 94.55 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.54 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 94.53 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.52 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.5 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 94.46 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.45 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.44 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=207.34 Aligned_cols=161 Identities=18% Similarity=0.245 Sum_probs=123.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+||+++|.+|||||||+++++.+.|...+.+++. .++.......++..+.++||||+|+++|+.++..|++.++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig---~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG---IDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc---eEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 4568999999999999999999999888665555442 3344444555777789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|||+++. .+++.+..|+..+.... ..++|+++|+||+|+...+. .++..+..+
T Consensus 88 ~~ilv~di~~~-~Sf~~i~~~~~~i~~~~---~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~----------------- 146 (216)
T 4dkx_A 88 AAVVVYDITNV-NSFQQTTKWIDDVRTER---GSDVIIMLVGNKTDLADKRQVSIEEGERKAK----------------- 146 (216)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHH---TTSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEeecchh-HHHHHHHHHHHHHHHhc---CCCCeEEEEeeccchHhcCcccHHHHhhHHH-----------------
Confidence 99999999997 78999999999887653 36799999999999976543 222221111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+|+||++|+ |++++++|.+.+
T Consensus 147 -------------------~~~~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 147 -------------------ELNVMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp -------------------HHTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred -------------------HhCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 224579999999999 999999998765
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=201.32 Aligned_cols=199 Identities=33% Similarity=0.550 Sum_probs=136.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCc-cccEEEEeCCCCCCchh-hHHhhhc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGK-IKPVHLVDVPGHSRLRP-KLDEFLP 138 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~-~~~~~~~ 138 (267)
..+.++|+++|++|+|||||+++|+++.+..... +++..+.. ..+++. .+.+++|||||+.+++. .+..+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 77 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT----SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS 77 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC----CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC----CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHh
Confidence 3567899999999999999999999887644332 22222221 233332 47899999999999888 7888999
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh-hcccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR-SAVSE 217 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 217 (267)
.+|++|+|+|+++...++.....++..++........+.|+++|+||+|+......+...+.+++.+..+.... ++++.
T Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~ 157 (214)
T 2fh5_B 78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPST 157 (214)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccc
Confidence 99999999999874234556666666655432112357899999999999988888888888888877554433 23344
Q ss_pred ccccccc--cCCCCCCCcccccccceeEEEEeeeccC------c-chhHHHHHHhhc
Q 024474 218 ADVTNDF--TLGIPGQAFSFSQCHNKVSVAEASGLTG------E-ISQVEQFIREQV 265 (267)
Q Consensus 218 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g------~-i~~l~~~l~~~~ 265 (267)
.+..... ..+..+..|.+++...++.|++|||++| + ++++++||.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 158 LDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 3333222 3455566777777667899999999999 8 999999998764
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=185.10 Aligned_cols=164 Identities=21% Similarity=0.350 Sum_probs=120.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.++.+. ...++.... .....++ .+.+++|||||+++++..+..+++.+
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-----~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~ 84 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-----VEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNT 84 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-----CEEEEET--TEEEEEEECCC----CGGGHHHHTTC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-----eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCC
Confidence 467899999999999999999999987754 222222211 1111122 37899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+......+++.+.+... .
T Consensus 85 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~---------~------ 146 (187)
T 1zj6_A 85 EFVIVVVDSTDR-ERISVTREELYKMLAHED--LRKAGLLIFANKQDVKECMTVAEISQFLKLT---------S------ 146 (187)
T ss_dssp CEEEEEEETTCT-TTHHHHHHHHHHHHTSGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTGG---------G------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHhchh--hCCCeEEEEEECCCCcCCCCHHHHHHHhChh---------h------
Confidence 999999999987 689999999998887532 2679999999999998755544433322110 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+. ..++.++++||++|+ ++++++||.+.+.
T Consensus 147 --------------~~--~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 147 --------------IK--DHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp --------------CC--SSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred --------------hc--CCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 00 234689999999999 9999999998764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-28 Score=186.29 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=121.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 79 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI---GAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAA 79 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS---SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEE
Confidence 4689999999999999999999887644332222 2233333334456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH-HHHHHHHHHHHHhhhhccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI-RKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+.......++ .+...+...
T Consensus 80 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~---------------- 139 (170)
T 1ek0_A 80 LVVYDVTKP-QSFIKARHWVKELHEQA---SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE---------------- 139 (170)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH----------------
T ss_pred EEEEecCCh-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECCCccccccccCCCHHHHHHHHH----------------
Confidence 999999986 67888888888887653 267899999999999754211000 011111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ ++++++||.+.++
T Consensus 140 ----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 140 ----------------EKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp ----------------HHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred ----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123479999999999 9999999998764
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=183.06 Aligned_cols=163 Identities=23% Similarity=0.379 Sum_probs=121.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|||||||+++|.+..+. .+.++.+ +.......+ .+.+++|||||++.++..+..+++.+|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-----~~~~t~g-~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 85 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-----HITPTQG-FNIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTD 85 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-----EEEEETT-EEEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-----cccCcCC-eEEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 56789999999999999999999987542 1222222 122222223 468999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 86 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-------~---------- 145 (181)
T 1fzq_A 86 ILIYVIDSADR-KRFEETGQELTELLEEEK--LSCVPVLIFANKQDLLTAAPASEIAEGLNL-------H---------- 145 (181)
T ss_dssp EEEEEEETTCG-GGHHHHHHHHHHHTTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTG-------G----------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECcCcccCCCHHHHHHHhCc-------h----------
Confidence 99999999987 678888889888876432 267899999999999876554333221110 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. ...++.++++||++|+ ++++++||.+.+.
T Consensus 146 -------------~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 146 -------------TI-RDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp -------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred -------------hc-cCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 00 0234679999999999 9999999988764
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=187.95 Aligned_cols=167 Identities=17% Similarity=0.318 Sum_probs=123.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc-ceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
....++|+++|.+|||||||+++|+++.+.. ...++ .+ +.... ++...+.+++|||||++++...+..+++.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t----~~-~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITAT----VG-YNVET--FEKGRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCC----SS-EEEEE--EEETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccc----cc-eeEEE--EEeCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 4567899999999999999999999987644 22222 22 22221 23445789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCC-----CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV-----KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
+|++|+|||+++. .++.....|+..++...... ..+.|+++|+||+|+......+++.+.+.....
T Consensus 87 ~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-------- 157 (199)
T 4bas_A 87 IDAVIFVVDSSDH-LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL-------- 157 (199)
T ss_dssp CSEEEEEEETTCG-GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHH--------
T ss_pred CCEEEEEEECCcH-HHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhh--------
Confidence 9999999999987 77999999999887642110 127899999999999887666555444331100
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. ..++.++++||++|+ +++++++|.+.+
T Consensus 158 --------------------~~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 158 --------------------MG--DHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp --------------------HT--TSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred --------------------cc--CCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 00 245689999999999 999999998764
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=182.28 Aligned_cols=160 Identities=22% Similarity=0.401 Sum_probs=118.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.. ..++. . +.... +....+.+++|||||+++++..+..+++++|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~----~-~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 72 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI----G-FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 72 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCS----S-CCEEE--EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcC----c-eeEEE--EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEE
Confidence 489999999999999999999877542 22222 2 11111 1233478999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .++.....|+..++.... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 73 ~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~------------- 129 (164)
T 1r8s_A 73 FVVDSNDR-ERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGL-------H------------- 129 (164)
T ss_dssp EEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG-------G-------------
T ss_pred EEEECCCH-HHHHHHHHHHHHHHhchh--hcCCeEEEEEECcCCcCCCCHHHHHHHhCc-------c-------------
Confidence 99999987 678888899988876432 257899999999999766544332221110 0
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.. ..++.++++||++|+ +++++++|.+.++
T Consensus 130 ----------~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 130 ----------SLR-HRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp ----------GCS-SCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ----------ccc-CccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 000 234679999999999 9999999998764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=183.65 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=123.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|+++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 80 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI---GAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS---SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCC
Confidence 356799999999999999999999877644332222 22233333344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 139 (170)
T 1r2q_A 81 AAIVVYDITNE-ESFARAKNWVKELQRQA---SPNIVIALSGNKADLANKRAVDFQEAQSYA----D------------- 139 (170)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECccCccccccCHHHHHHHH----H-------------
Confidence 99999999986 67888888888887653 26789999999999965432 22221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.++
T Consensus 140 -------------------~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 140 -------------------DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp -------------------HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123578999999999 9999999998875
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=187.60 Aligned_cols=165 Identities=21% Similarity=0.343 Sum_probs=118.7
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
...+.++|+++|++|+|||||+++|.++.+.. .. |+.. +..... ....+.+.+|||||+++++..+..+++.
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~----~t~~-~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 96 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TI----PTIG-FNVETV--EYKNICFTVWDVGGQDKIRPLWRHYFQN 96 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EE----EETT-EEEEEE--EETTEEEEEEECC-----CTTHHHHHHT
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cC----CcCc-eeEEEE--EECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence 35678899999999999999999999877532 22 2222 222222 2234789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
+|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 97 ~d~iilv~D~~~~-~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~-------~-------- 158 (192)
T 2b6h_A 97 TQGLIFVVDSNDR-ERVQESADELQKMLQEDE--LRDAVLLVFANKQDMPNAMPVSELTDKLGL-------Q-------- 158 (192)
T ss_dssp CCEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG-------G--------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHhcccc--cCCCeEEEEEECCCCCCCCCHHHHHHHhCc-------c--------
Confidence 9999999999987 678889999988876432 257999999999999766544332221110 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+. ...++.++++||++|+ ++++++||.+.+.
T Consensus 159 ---------------~~-~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 ---------------HL-RSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp ---------------GC-SSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ---------------cc-cCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 00 0234679999999999 9999999998764
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=182.87 Aligned_cols=163 Identities=21% Similarity=0.367 Sum_probs=122.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|.++.+.. .. ++.. .......++ ...+.+|||||+++++..+..+++.+|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~----~t~~-~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d 76 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TI----PTIG-FNVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTD 76 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CC----CCSS-EEEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cC----CcCc-cceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCC
Confidence 467899999999999999999999877532 22 2211 222222222 468999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 77 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~---------- 136 (171)
T 1upt_A 77 AVIYVVDSCDR-DRIGISKSELVAMLEEEE--LRKAILVVFANKQDMEQAMTSSEMANSLGL-------P---------- 136 (171)
T ss_dssp EEEEEEETTCC-TTHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTG-------G----------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHhchh--hCCCEEEEEEECCCCcCCCCHHHHHHHhCc-------h----------
Confidence 99999999987 678889999988876532 267899999999999876555443322210 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.. ..++.++++||++|+ ++++++||.+.++
T Consensus 137 -------------~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 137 -------------ALK-DRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp -------------GCT-TSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------------hcc-CCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 000 234589999999999 9999999988753
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=187.84 Aligned_cols=175 Identities=25% Similarity=0.375 Sum_probs=117.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..+|+++|++|||||||+++|.++.+.. ..++..++.. ...+++ +.+++|||||+++++..+..+++.+|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~-----~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d 94 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSE-----ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAIN 94 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-----EEEETT--EEEEEEEECC----CCGGGGGGGGCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCceeE-----EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCC
Confidence 466799999999999999999999877532 2233332211 122233 68999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....|+.+++.... ..+.|+++|+||+|+......+++.+.+.. . .......
T Consensus 95 ~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~----~~~~~~~-- 161 (198)
T 1f6b_A 95 GIVFLVDCADH-ERLLESKEELDSLMTDET--IANVPILILGNKIDRPEAISEERLREMFGL----Y----GQTTGKG-- 161 (198)
T ss_dssp EEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTSCEEEEEECTTSTTCCCHHHHHHHHTC----T----TTCCCSS--
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHhCcc--cCCCcEEEEEECCCccccCCHHHHHHHhCc----c----ccccccc--
Confidence 99999999987 689999999998886532 267999999999999865454443322211 0 0000000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+.- .....+.+++|||++|+ ++++++||.+.+.
T Consensus 162 --------~~~~~~-~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~ 198 (198)
T 1f6b_A 162 --------SVSLKE-LNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198 (198)
T ss_dssp --------CCCTTT-CCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred --------cccccc-ccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 000000 00245689999999999 9999999998763
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=181.25 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=120.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.++.+.....++ ..........+++..+.+.+|||||+.++...+..+++.+|+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 77 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT----IEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQG 77 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC----SEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC----ccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCE
Confidence 3579999999999999999999987764433222 222222333446666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+..... .++..+.. ..
T Consensus 78 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~------------- 137 (167)
T 1c1y_A 78 FALVYSITAQ-STFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGKEQGQNLA----RQ------------- 137 (167)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHHC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHH----HH-------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhhC--cCCCcEEEEEECccccccccCCHHHHHHHH----HH-------------
Confidence 9999999986 667777788777765321 25799999999999975432 22222111 10
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+..++++||++|+ ++++++||.+.+.
T Consensus 138 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 138 ------------------WCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp ------------------TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred ------------------ccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 124579999999999 9999999988753
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=186.05 Aligned_cols=161 Identities=15% Similarity=0.237 Sum_probs=120.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+|+|.++.+... ..++..+........++..+.+.+|||||++++...+..+++.+|+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE----YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCC----CCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 467999999999999999999998775332 2333333333444456666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+.......+..+.+.+
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------------------- 136 (189)
T 4dsu_A 79 FLCVFAINNT-KSFEDIHHYREQIKRVKD--SEDVPMVLVGNKCDLPSRTVDTKQAQDLAR------------------- 136 (189)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTSSSCSSCHHHHHHHHH-------------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccCcccccCHHHHHHHHH-------------------
Confidence 9999999986 678888888888776432 267999999999999754433222222221
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 137 ----------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 137 ----------------SYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp ----------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=186.02 Aligned_cols=165 Identities=22% Similarity=0.312 Sum_probs=123.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.++.++|+++|++|+|||||+++|.++.+.....++... ++ .. +....+.+.+|||||++++...+..+++.+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~--~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF---NM--RK--ITKGNVTIKLWDIGGQPRFRSMWERYCRGV 91 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSE---EE--EE--EEETTEEEEEEEECCSHHHHTTHHHHHTTC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCce---eE--EE--EEeCCEEEEEEECCCCHhHHHHHHHHHccC
Confidence 356789999999999999999999988765333332221 11 11 223347899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 92 d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-------~--------- 152 (188)
T 1zd9_A 92 SAIVYMVDAADQ-EKIEASKNELHNLLDKPQ--LQGIPVLVLGNKRDLPGALDEKELIEKMNL-------S--------- 152 (188)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTG-------G---------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhCcc--cCCCCEEEEEECCCCccCCCHHHHHHHhCh-------h---------
Confidence 999999999986 678899999988876432 267899999999999876444332221110 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.. ...+.++++||++|+ ++++++||.+.++
T Consensus 153 --------------~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 153 --------------AIQ-DREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp --------------GCC-SSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred --------------hhc-cCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000 234678999999999 9999999998764
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=184.88 Aligned_cols=169 Identities=21% Similarity=0.308 Sum_probs=120.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..+|+++|++|||||||++++.++.+.. ..++..++ .....+++ +.+++|||||+++++..+..+++.+|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~-----~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT-----SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVN 92 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE-----EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC-----eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 456799999999999999999999887532 22222221 12222233 68999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .+++....|+..++.... ..+.|+++|+||+|+......+++.+.+.. . ....
T Consensus 93 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~-----~~~~---- 156 (190)
T 1m2o_B 93 GIVFLVDAADP-ERFDEARVELDALFNIAE--LKDVPFVILGNKIDAPNAVSEAELRSALGL----L-----NTTG---- 156 (190)
T ss_dssp EEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTC----S-----SCCC----
T ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHcchh--hcCCCEEEEEECCCCcCCCCHHHHHHHhCC----c-----cccc----
Confidence 99999999987 688999999988876432 267999999999999865444433222110 0 0000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+. +. ....+.++++||++|+ ++++++||.+++
T Consensus 157 -------~~~---~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 157 -------SQR---IE-GQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp -------------CC-SSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred -------ccc---cc-ccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 000 11 1345689999999999 999999998764
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=182.62 Aligned_cols=163 Identities=16% Similarity=0.232 Sum_probs=123.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||+++|++..+.....++. +.++......+++..+.+.+|||||+.++...+..+++.+
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCS---CCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCc---eeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 3456799999999999999999999887654333332 2223333333455667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++|+|+|+++. .+++....|+..+.... ..+.|+++|+||+|+..... .++..+..+
T Consensus 86 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---------------- 145 (181)
T 2efe_B 86 AAAIIVFDVTNQ-ASFERAKKWVQELQAQG---NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ---------------- 145 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECCcccccccCCHHHHHHHHH----------------
Confidence 999999999986 67788888888887653 25889999999999975432 222222111
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.+.
T Consensus 146 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 146 --------------------ENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp --------------------HTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred --------------------HcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 123479999999999 9999999998764
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=182.50 Aligned_cols=163 Identities=21% Similarity=0.339 Sum_probs=119.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|.+|+|||||+++|.++.+ ....++.... .....++ ++.+.+|||||+++++..+..+++.+
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-----~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-----VEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-----CEEEEET--TEEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-----eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccC
Confidence 34678999999999999999999999876 2222222211 1111122 36899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. . .
T Consensus 90 d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~---------~-----~- 151 (181)
T 2h17_A 90 EFVIVVVDSTDR-ERISVTREELYKMLAHED--LRKAGLLIFANKQDVKECMTVAEISQFLKL---------T-----S- 151 (181)
T ss_dssp CEEEEEEETTCT-TTHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG---------G-----G-
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhChh--hCCCeEEEEEECCCcccCCCHHHHHHHhCc---------c-----c-
Confidence 999999999987 689999999988886422 267899999999999875554443322110 0 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ...++.++++||++|+ ++++++||.+.+
T Consensus 152 --------------~--~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 152 --------------I--KDHQWHIQACCALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp --------------C--CSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred --------------c--cCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence 0 0234589999999999 999999998753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=184.41 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=123.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|+++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTI---GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCS---SEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCc---ceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 456899999999999999999999887643333322 22333333444556678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 98 ~iilV~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~----~------------- 156 (192)
T 2fg5_A 98 AAVIVYDITKQ-DSFYTLKKWVKELKEHG---PENIVMAIAGNKCDLSDIREVPLKDAKEYA----E------------- 156 (192)
T ss_dssp EEEEEEETTCT-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCHHHHHHHH----H-------------
Confidence 99999999987 67888888888876642 25789999999999975332 22222111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.+.
T Consensus 157 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 157 -------------------SIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp -------------------TTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred -------------------HcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 123579999999999 9999999998764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=184.03 Aligned_cols=162 Identities=18% Similarity=0.303 Sum_probs=121.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||++++.++. .....++.. ........+ ...+++|||||+++++..+..+++.+|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~-----~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d 87 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG-----FNIKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTD 87 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS-----EEEEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc-----cceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCC
Confidence 578899999999999999999999876 232222222 122222222 368999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|++++ .+++....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 88 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~---------- 147 (186)
T 1ksh_A 88 GLIWVVDSADR-QRMQDCQRELQSLLVEER--LAGATLLIFANKQDLPGALSCNAIQEALEL-------D---------- 147 (186)
T ss_dssp EEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG-------G----------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHhChh--cCCCcEEEEEeCccCCCCCCHHHHHHHhCh-------h----------
Confidence 99999999987 678888899988877532 267999999999999876554433221110 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. ...++.++++||++|+ +++++++|.+.+
T Consensus 148 -------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 148 -------------SI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp -------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------hc-cCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 0235689999999999 999999998765
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=183.52 Aligned_cols=161 Identities=17% Similarity=0.285 Sum_probs=117.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||+++|.++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 78 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI---GIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMG 78 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC----------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCE
Confidence 34699999999999999999999887644333332 333444444456666789999999999998889999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+.......+..+.+ ..
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~---------------- 135 (170)
T 1g16_A 79 IILVYDITDE-RTFTNIKQWFKTVNEHA---NDEAQLLLVGNKSDMETRVVTADQGEAL---AK---------------- 135 (170)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCTTCCSCHHHHHHH---HH----------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECccCCcCccCHHHHHHH---HH----------------
Confidence 9999999986 56777788887776643 2578999999999995432221111111 11
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 136 ----------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 136 ----------------ELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp ----------------HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=183.57 Aligned_cols=165 Identities=21% Similarity=0.390 Sum_probs=122.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC-cccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS-THQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.+.++|+++|.+|+|||||+++|.+.. +..... ++.. +......++ ++.+.+|||||+++++..+..+++.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----~t~~-~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL----PTIG-FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC----CCSS-EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC----Cccc-eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 467899999999999999999999876 222222 2222 222233333 36899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .++.....|+..++........+.|+++|+||+|+......+++.+.+.
T Consensus 92 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------------------ 152 (190)
T 2h57_A 92 QAIIFVIDSSDR-LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC------------------ 152 (190)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT------------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC------------------
Confidence 999999999986 6788888899888875321125789999999999987655544333221
Q ss_pred cccccCCCCCCCcccccc-cceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+..+ ..++.++++||++|+ +++++++|.+.++
T Consensus 153 --------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 --------------LENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp --------------GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred --------------hhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0000 235689999999999 9999999998764
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=187.54 Aligned_cols=161 Identities=17% Similarity=0.258 Sum_probs=118.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI---GVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCc---ceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 445799999999999999999999887644333332 22233333344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+...+ ..++..+..+
T Consensus 104 ~iilv~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~----------------- 162 (201)
T 2hup_A 104 GAILAYDITKR-SSFLSVPHWIEDVRKYA---GSNIVQLLIGNKSDLSELREVSLAEAQSLAE----------------- 162 (201)
T ss_dssp EEEEEEETTBH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCccccccccCHHHHHHHHH-----------------
Confidence 99999999986 67888888888877643 2678999999999997543 2222222111
Q ss_pred ccccccCCCCCCCccccccccee-EEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++ .++++||++|+ ++++++||.+.+
T Consensus 163 -------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 163 -------------------HYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp -------------------HTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1123 78999999999 999999998764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=180.30 Aligned_cols=161 Identities=16% Similarity=0.243 Sum_probs=121.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.++.+.....++. +.++........+....+.+|||||++++...+..+++.+|+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI---GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCC---SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce---eEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 45799999999999999999999987644332222 223333333445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .++.....|+..+.... ....|+++|+||+|+..... .++..+ + ..
T Consensus 82 ~i~v~d~~~~-~s~~~~~~~~~~l~~~~---~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~---~~-------------- 139 (170)
T 1z0j_A 82 AIIVYDITKE-ETFSTLKNWVRELRQHG---PPSIVVAIAGNKCDLTDVREVMERDAKD-Y---AD-------------- 139 (170)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTSEEEEEEECTTCGGGCCSCHHHHHH-H---HH--------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECCccccccccCHHHHHH-H---HH--------------
Confidence 9999999986 66777888887776642 36789999999999975432 221111 1 11
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+..++++||++|+ +++++++|.+.+.
T Consensus 140 ------------------~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 140 ------------------SIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ------------------HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ------------------HcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 123579999999999 9999999998764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=181.94 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=115.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 80 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL---GASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN 80 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC---SCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCcc---ceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCC
Confidence 456799999999999999999999887654433333 22333334445666778999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 139 (170)
T 1z08_A 81 GAILVYDITDE-DSFQKVKNWVKELRKML---GNEICLCIVGNKIDLEKERHVSIQEAESYA----E------------- 139 (170)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccccCHHHHHHHH----H-------------
Confidence 99999999986 67788888887765532 25789999999999976432 22222111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 140 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 140 -------------------SVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp -------------------HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 113478999999999 999999998765
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-27 Score=179.29 Aligned_cols=160 Identities=19% Similarity=0.287 Sum_probs=118.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.++.+.... .++...........++..+.+.+|||||+.++...+..+++.+|+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 78 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 78 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCC----CCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCE
Confidence 4579999999999999999999987753322 222222222233446666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~-------------- 137 (168)
T 1u8z_A 79 FLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRA----D-------------- 137 (168)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHH----H--------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccccccCccCHHHHHHHH----H--------------
Confidence 9999999987 678888888888776432 25799999999999975432 22222211 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 138 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 138 ------------------QWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ------------------HHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998765
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=178.08 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=101.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|+|||||+++|.+..... ..++. +.++ .....+++..+.+.+|||||+..+...+..+++.+|++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAA---GHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY 76 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC--------------CEE-EEEEEETTEEEEEEEEECC---------------CCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCcc---ccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEE
Confidence 5799999999999999999998765421 11111 1222 22334466778899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+...... ++.. .+. .
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~---~--------------- 134 (166)
T 3q72_A 77 VIVYSVTDK-GSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGR-ACA---V--------------- 134 (166)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHH-HHH---H---------------
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccccccccccCHHHHH-HHH---H---------------
Confidence 999999987 678889999888876532 267999999999999765432 2111 111 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 135 -----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 135 -----------------VFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp -----------------HTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred -----------------HhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998765
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=180.90 Aligned_cols=162 Identities=25% Similarity=0.412 Sum_probs=117.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|||||||++++.++.+ . ...++.+ +......++ ...+.+|||||+.+++..+..+++.+|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~----~~~~t~~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-V----TTKPTIG-FNVETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTA 87 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-E----EECSSTT-CCEEEEEET--TEEEEEEEEC----CCTTGGGTTTTEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-C----ccCCcCc-cceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 6789999999999999999999998765 1 1222222 111122222 368999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .+++....|+..++.... ..+.|+++|+||+|+......+++.+.+.. . .
T Consensus 88 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~---------~-----~-- 148 (183)
T 1moz_A 88 AVIFVVDSTDK-DRMSTASKELHLMLQEEE--LQDAALLVFANKQDQPGALSASEVSKELNL---------V-----E-- 148 (183)
T ss_dssp EEEEEEETTCT-TTHHHHHHHHHHHTTSST--TSSCEEEEEEECTTSTTCCCHHHHHHHTTT---------T-----T--
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHcChh--hCCCeEEEEEECCCCCCCCCHHHHHHHhCc---------c-----c--
Confidence 99999999987 778999999988876532 267899999999999876554433221110 0 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ....+.++++||++|+ ++++++||.+.+
T Consensus 149 -------------~--~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 149 -------------L--KDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp -------------C--CSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred -------------c--cCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 0 0234689999999999 999999998865
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-27 Score=179.77 Aligned_cols=160 Identities=17% Similarity=0.247 Sum_probs=120.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||++++.++.+... ..++..+.......+++..+.+.+|||||++++...+..+++.+|+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~ 77 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEK----YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG 77 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSC----CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCccc----CCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 357999999999999999999998775432 2233333333334446666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+...... .+..+ ...
T Consensus 78 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~-------------- 136 (167)
T 1kao_A 78 FILVYSLVNQ-QSFQDIKPMRDQIIRVKR--YEKVPVILVGNKVDLESEREVSSSEGRA----LAE-------------- 136 (167)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHTT--TSCCCEEEEEECGGGGGGCCSCHHHHHH----HHH--------------
T ss_pred EEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCcccccccCCHHHHHH----HHH--------------
Confidence 9999999986 677888888888776432 257999999999998654322 21111 111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 137 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 137 ------------------EWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ------------------HHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ------------------HhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-27 Score=186.44 Aligned_cols=161 Identities=17% Similarity=0.261 Sum_probs=121.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|+++.+.....++. +.++......+++..+.+++|||||++++...+..+++.+|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI---GVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCC---SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 345799999999999999999999887654333322 22333334445666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+ + ..
T Consensus 101 ~~i~v~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~-~---~~------------- 159 (201)
T 2ew1_A 101 ALILTYDITCE-ESFRCLPEWLREIEQYA---SNKVITVLVGNKIDLAERREVSQQRAEE-F---SE------------- 159 (201)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCSSCHHHHHH-H---HH-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHHH-H---HH-------------
Confidence 99999999986 67777888888776542 26789999999999975432 222111 1 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 160 -------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 160 -------------------AQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp -------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-27 Score=184.33 Aligned_cols=161 Identities=20% Similarity=0.290 Sum_probs=121.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATI---GVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCC---SEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCcc---ceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 45799999999999999999999887644333322 223333334446666889999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 91 ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~--------------- 148 (195)
T 1x3s_A 91 VILVYDVTRR-DTFVKLDNWLNELETYCT--RNDIVNMLVGNKIDKENREVDRNEGLKFA----R--------------- 148 (195)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHTTCCS--CSCCEEEEEEECTTSSSCCSCHHHHHHHH----H---------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhcC--cCCCcEEEEEECCcCcccccCHHHHHHHH----H---------------
Confidence 9999999986 677788888888766432 25789999999999954322 22221111 1
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 149 -----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 149 -----------------KHSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=187.80 Aligned_cols=163 Identities=18% Similarity=0.285 Sum_probs=119.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||+++|++..+.....++. +.++......+++..+.+.+|||||++++...+..+++.+
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI---GIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCC---SCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc---cceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 3467899999999999999999999887644333322 3334434444456667899999999999988899999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|||+++. .++..+..|+..+.... ..+.|+++|+||+|+.......+..+.+. .
T Consensus 94 d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~-------------- 152 (213)
T 3cph_A 94 MGIILVYDVTDE-RTFTNIKQWFKTVNEHA---NDEAQLLLVGNKSDMETRVVTADQGEALA---K-------------- 152 (213)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHT---TTCSEEEEEEECTTCSSCCSCHHHHHHHH---H--------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCcccccCHHHHHHHH---H--------------
Confidence 999999999986 56777788887776642 25789999999999953322211111111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 153 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 153 ------------------ELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp ------------------HHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112368999999999 999999998764
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-27 Score=184.81 Aligned_cols=161 Identities=19% Similarity=0.309 Sum_probs=122.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++.......++..+.+.+|||||++.+...+..+++.+|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI---GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCS---SEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc---cceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 345799999999999999999999887644332222 33344444445666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+...... .+..+ +. .
T Consensus 91 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~---~------------- 149 (196)
T 3tkl_A 91 GIIVVYDVTDQ-ESFNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTTKKVVDYTTAKE-FA---D------------- 149 (196)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccccCHHHHHH-HH---H-------------
Confidence 99999999986 67788888887776643 257899999999999765432 11111 11 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 150 -------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 150 -------------------SLGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp -------------------HTTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=180.80 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=117.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|++|||||||+++++++.+.... .++...+. ....+++..+.+++|||||++.++ +++.+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~----~~t~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE----SPEGGRFK-KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC----CTTCEEEE-EEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCCcceEE-EEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 467789999999999999999999998764432 23333332 344456777889999999998876 78889
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC----CCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA----HTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
|++++|||+++. .+++.+..|+..+..... ..+.|+++|+||+|+... ...++..+..+ .
T Consensus 87 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~--------- 150 (184)
T 3ihw_A 87 DAVVFVFSLEDE-ISFQTVYNYFLRLCSFRN--ASEVPMVLVGTQDAISAANPRVIDDSRARKLST----D--------- 150 (184)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHTTSC--GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH----H---------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccccCHHHHHHHHH----H---------
Confidence 999999999997 678888889988876532 157899999999999522 12222221111 1
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+.+.|+++||++|+ +++++++|.+.+
T Consensus 151 ----------------------~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 151 ----------------------LKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp ----------------------TTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------------cCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 223579999999999 999999998754
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=183.48 Aligned_cols=194 Identities=32% Similarity=0.471 Sum_probs=137.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhcc-
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQ- 139 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~- 139 (267)
..+.++|+++|++|+|||||+++|.+..+.. ..++..++.. . ......+.+|||||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~-~~~~~~~~~~---~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSA---A-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCC-BCCCSSCEEE---T-----TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-eeeecCceEE---E-----EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4577899999999999999999999887533 1112222111 1 1144689999999999999988888877
Q ss_pred ---CCEEEEEEeCC-CCCCchHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh--
Q 024474 140 ---AAGIVFVVDAL-EFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR-- 212 (267)
Q Consensus 140 ---~d~ii~v~d~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~-- 212 (267)
+|++|+|+|++ +. .++.....|+.+++..... ...++|+++|+||+|+........+.+.+.+.+..+....
T Consensus 80 ~~~~~~~i~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDP-KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp GGGEEEEEEEEETTSCT-TCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCCh-HHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 55 6788888998888764211 1267999999999999988887777777766665553322
Q ss_pred --hccccccc-----cccc-cCCCCCCCcccccccceeEEEEeeeccCcchhHHHHHHhhc
Q 024474 213 --SAVSEADV-----TNDF-TLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 265 (267)
Q Consensus 213 --~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~ 265 (267)
..+++... .... .+... ..|.|+....++.++.+|+.+|++++|++|+.+++
T Consensus 159 ~~~~~Sa~~~~~~~~~~~~~~l~~~-~~f~~~~~~~~v~~~~~s~~~~~i~~~~~~~~~~~ 218 (218)
T 1nrj_B 159 SLNEVERKINEEDYAENTLDVLQST-DGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 218 (218)
T ss_dssp HHHC--------------CTTC-----CCCGGGSSSCEEEEECBTTTTBCHHHHHHHHHHC
T ss_pred cccccccccccccchhhhcccccCC-CCccccccCCceEEEeccccCCcHHHHHHHHHhhC
Confidence 22232221 1111 12223 67888888889999999999999999999998864
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=181.40 Aligned_cols=162 Identities=13% Similarity=0.224 Sum_probs=122.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|++|+|||||+++|.++.+.... .++...........++..+.+.+|||||++++...+..+++.+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 456789999999999999999999987654332 2223322234444566667889999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|+|+++. .+++.+..|+..+..... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 91 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~------------ 151 (183)
T 3kkq_A 91 DGFLIVYSVTDK-ASFEHVDRFHQLILRVKD--RESFPMILVANKVDLMHLRKVTRDQGKEMA----T------------ 151 (183)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHT--SSCCCEEEEEECTTCSTTCCSCHHHHHHHH----H------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECCCchhccCcCHHHHHHHH----H------------
Confidence 999999999987 678888888887765322 36789999999999976432 22222111 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeec-cCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGL-TGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||+ +|+ +++++++|.+.+
T Consensus 152 --------------------~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 152 --------------------KYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp --------------------HHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 112569999999 999 999999998765
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-27 Score=185.11 Aligned_cols=163 Identities=20% Similarity=0.299 Sum_probs=114.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|+++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL---GVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC-------------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCc---cceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 4567899999999999999999999887643332222 2223333344466667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC------C--CHHHHHHHHHHHHHHHHhhh
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA------H--TKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~------~--~~~~~~~~l~~~~~~~~~~~ 212 (267)
|++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+... . ..++.. +...
T Consensus 102 d~iilv~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~----~~~~------ 167 (199)
T 2p5s_A 102 DGVLLLYDVTCE-KSFLNIREWVDMIEDAA---HETVPIMLVGNKADIRDTAATEGQKCVPGHFGE----KLAM------ 167 (199)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHH----HHHH------
T ss_pred CEEEEEEECCCh-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccccccccccCHHHHH----HHHH------
Confidence 999999999986 66777778877665532 257899999999998521 1 111111 1011
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.+.
T Consensus 168 --------------------------~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 --------------------------TYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp --------------------------HHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred --------------------------HcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 123479999999999 9999999988754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-27 Score=181.56 Aligned_cols=161 Identities=16% Similarity=0.233 Sum_probs=120.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|.++.+.... .++...........++..+.+.+|||||++++...+..+++.+|
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDY----DPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcccc----CCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 45689999999999999999999988654332 22222222233344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++..+..|+..++.... ..+.|+++|+||+|+...... ++..+ +. .
T Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~---~------------- 142 (181)
T 2fn4_A 83 GFLLVFAINDR-QSFNEVGKLFTQILRVKD--RDDFPVVLVGNKADLESQRQVPRSEASA-FG---A------------- 142 (181)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHT--SSCCCEEEEEECGGGGGGCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHH-HH---H-------------
Confidence 99999999986 678888888888765422 367899999999999764332 21111 11 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 143 -------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 143 -------------------SHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp -------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-27 Score=181.38 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=121.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI---GVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSC---CCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 456899999999999999999999887643322222 22333333334566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+..... .++..+..+
T Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 148 (179)
T 1z0f_A 90 GALMVYDITRR-STYNHLSSWLTDARNLT---NPNTVIILIGNKADLEAQRDVTYEEAKQFAE----------------- 148 (179)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEeCcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHHHHH-----------------
Confidence 99999999986 67777888887776543 26789999999999965432 222222111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 149 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 -------------------ENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp -------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998865
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=182.91 Aligned_cols=160 Identities=22% Similarity=0.239 Sum_probs=121.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||+++|++..+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV---GIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC---SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc---ceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 45799999999999999999999987654333332 223333334445666799999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+ ...
T Consensus 84 ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~-------------- 141 (203)
T 1zbd_A 84 FILMYDITNE-ESFNAVQDWSTQIKTYS---WDNAQVLLVGNKCDMEDERVVSSERGRQ----LAD-------------- 141 (203)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHS---CSSCEEEEEEECTTCTTSCCSCHHHHHH----HHH--------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccCcccccCHHHHHH----HHH--------------
Confidence 9999999986 67888888888776542 25789999999999976432 222211 111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 142 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 142 ------------------HLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp ------------------HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ------------------HCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112478999999999 999999988754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-27 Score=185.33 Aligned_cols=160 Identities=18% Similarity=0.254 Sum_probs=93.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+++|||||++++...+..+++.+|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI---GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHH---CEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc---cceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 45799999999999999999999876543322222 223333333446666889999999999998888899999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 84 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~-------------- 141 (183)
T 2fu5_C 84 IMLVYDITNE-KSFDNIRNWIRNIEEHA---SADVEKMILGNKCDVNDKRQVSKERGEKLA----L-------------- 141 (183)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEEC--CCSCCCSCHHHHHHHH----H--------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECccCCccCcCCHHHHHHHH----H--------------
Confidence 9999999986 67888888888877642 25789999999999976432 22222111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 142 ------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 142 ------------------DYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp ------------------HHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=178.16 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=110.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--chhhHHhhhccC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--LRPKLDEFLPQA 140 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--~~~~~~~~~~~~ 140 (267)
..++|+++|++|+|||||+++|.+..+.... .+.+.++......+++..+.+.+|||||+.. +......+++.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 78 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH----EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGG 78 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C----CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc----CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccC
Confidence 4579999999999999999999988753221 1122333333344566667899999999987 566677888999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|||+++. .+++....|+..+..... ..+.|+++|+||+|+........ +.......
T Consensus 79 ~~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~-------------- 139 (175)
T 2nzj_A 79 SAYVIVYSIADR-GSFESASELRIQLRRTHQ--ADHVPIILVGNKADLARCREVSV--EEGRACAV-------------- 139 (175)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCH--HHHHHHHH--------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhhc--cCCCCEEEEEEChhhccccccCH--HHHHHHHH--------------
Confidence 999999999986 678888888877766421 25799999999999976543211 01111111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 140 ------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 140 ------------------VFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp ------------------HHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-27 Score=184.03 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=120.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+++|||||++++...+..+++.+|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----C---CSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---cceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 446799999999999999999999887643332222 33343334444666678999999999999988999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+. ..
T Consensus 96 ~ii~v~d~~~~-~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~------------- 154 (191)
T 2a5j_A 96 GALLVYDITRR-ETFNHLTSWLEDARQHS---SSNMVIMLIGNKSDLESRRDVKREEGEAF----AR------------- 154 (191)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHH----HH-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccCCccccCHHHHHHH----HH-------------
Confidence 99999999986 67888888888877642 25789999999999975432 2222111 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 155 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 155 -------------------EHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp -------------------HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-27 Score=181.24 Aligned_cols=161 Identities=18% Similarity=0.241 Sum_probs=121.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|+++.+.....++. +.++......+++..+.+.+|||||+.++...+..+++.+|+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI---GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCC---SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce---eeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 45799999999999999999999877644332222 223333344446666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 90 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~-------------- 147 (179)
T 2y8e_A 90 AVVVYDITNT-NSFHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSDKRQVSTEEGERKA----K-------------- 147 (179)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHH---TTSSEEEEEEECGGGGGGCCSCHHHHHHHH----H--------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECCcccccCcCCHHHHHHHH----H--------------
Confidence 9999999986 57778888888776542 25789999999999975433 22221111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.++
T Consensus 148 ------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 148 ------------------ELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp ------------------HHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred ------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123478999999999 9999999998764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=179.08 Aligned_cols=165 Identities=14% Similarity=0.177 Sum_probs=119.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI---GVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD 81 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CC---SEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce---eeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCC
Confidence 356799999999999999999999887643332222 22333333344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCC-CCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+....
T Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---------------- 144 (177)
T 1wms_A 82 CCLLTFSVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD---------------- 144 (177)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----------------
Confidence 99999999986 567777777777665321 112678999999999997332 23222221111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+.++++||++|+ +++++++|.+.+
T Consensus 145 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 145 -------------------NGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp -------------------TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224568999999999 999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=183.05 Aligned_cols=162 Identities=18% Similarity=0.275 Sum_probs=122.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.++.+.... .++..........+++..+.+.+|||||+.++...+..+++.+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 456689999999999999999999987754332 2222322223334466667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|||+++. .++.....|+..+..... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 87 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------ 147 (206)
T 2bov_A 87 EGFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRA----E------------ 147 (206)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTCGGGCCSCHHHHHHHH----H------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccCccccccccHHHHHHHH----H------------
Confidence 999999999987 678888888888876532 25799999999999976432 22222211 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 148 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 148 --------------------QWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp --------------------HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 113469999999999 999999998764
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=181.91 Aligned_cols=161 Identities=20% Similarity=0.279 Sum_probs=120.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 84 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI---GVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 84 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCS---EEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence 345799999999999999999999887644332222 22333333344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... ..+..+.. .
T Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 143 (186)
T 2bme_A 85 GALLVYDITSR-ETYNALTNWLTDARMLA---SQNIVIILCGNKKDLDADREVTFLEASRFA----Q------------- 143 (186)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHHHH----H-------------
Confidence 99999999986 67777888887766542 26789999999999965432 22221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 144 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 144 -------------------ENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp -------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=182.85 Aligned_cols=160 Identities=21% Similarity=0.239 Sum_probs=121.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||+++|+++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV---GIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC---CCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce---eEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 45799999999999999999999987644333322 233333333445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|+|+++. .+++....|+..+.... ..+.|+++|+||+|+..... .++.. +...
T Consensus 98 ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~-------------- 155 (189)
T 2gf9_A 98 FLLMYDIANQ-ESFAAVQDWATQIKTYS---WDNAQVILVGNKCDLEDERVVPAEDGR----RLAD-------------- 155 (189)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHH----HHHH--------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccCCCHHHHH----HHHH--------------
Confidence 9999999986 57777888887776642 25789999999999975432 22211 1111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 156 ------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 156 ------------------DLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112479999999999 999999998764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-27 Score=183.72 Aligned_cols=160 Identities=19% Similarity=0.268 Sum_probs=120.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++ .+.++.......++..+.+.+|||||++.+...+..+++.+|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITT---IGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTT---BSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCC---ceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 45689999999999999999999988754322222 233344444444666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++..+..|+..+.... .+.|+++|+||+|+...... .+..+. ..
T Consensus 84 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~------------- 141 (181)
T 3tw8_B 84 GVIVVYDVTSA-ESFVNVKRWLHEINQNC----DDVCRILVGNKNDDPERKVVETEDAYKF----AG------------- 141 (181)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHC----TTSEEEEEEECTTCGGGCCSCHHHHHHH----HH-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECCCCchhcccCHHHHHHH----HH-------------
Confidence 99999999987 67888888888887642 57899999999998764422 211111 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 142 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 142 -------------------QMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp -------------------HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=184.13 Aligned_cols=162 Identities=22% Similarity=0.364 Sum_probs=121.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++.++|+++|++|+|||||++++.++.+.. ..++.. +.......+ .+.+++|||||+++++..+..+++.+|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~-~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d 91 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-----TVPTVG-VNLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTD 91 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-----ECSSTT-CCEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-----cCCCCc-eEEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCC
Confidence 578899999999999999999998876532 222222 111112222 468999999999999998899999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|++++ .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 92 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~---------- 151 (189)
T 2x77_A 92 AVIYVVDSTDR-DRMGVAKHELYALLDEDE--LRKSLLLIFANKQDLPDAASEAEIAEQLGV-------S---------- 151 (189)
T ss_dssp EEEEEEETTCC-TTHHHHHHHHHHHHTCST--TTTCEEEEEEECTTSTTCCCHHHHHHHTTG-------G----------
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHhhhh--cCCCeEEEEEECCCCcCCCCHHHHHHHhCh-------h----------
Confidence 99999999987 678889999988887532 257899999999999876554333221110 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. ...++.++++||++|+ ++++++||.+.+
T Consensus 152 -------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 152 -------------SI-MNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp -------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------hc-cCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 00 0234589999999999 999999998765
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=182.19 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=121.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|++..+.....++. +.++......+++..+.+.+|||||+.++...+..+++.+|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI---GVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS---SEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 445799999999999999999999987643332222 22333333334566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 100 ~vi~v~D~~~~-~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 158 (193)
T 2oil_A 100 GALLVFDLTKH-QTYAVVERWLKELYDHA---EATIVVMLVGNKSDLSQAREVPTEEARMFA----E------------- 158 (193)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHTTS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECCCcccccccCHHHHHHHH----H-------------
Confidence 99999999986 56777788888877642 36789999999999975432 22221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 159 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 159 -------------------NNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -------------------HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=183.14 Aligned_cols=163 Identities=19% Similarity=0.322 Sum_probs=119.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-hhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-PKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~~~~~~ 140 (267)
.+.++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++. ..+..+++.+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI---GVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCC---SCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc---ceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 456899999999999999999999887654333322 223333344445666789999999999888 7889999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++.. .+. .
T Consensus 95 d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~---~------------ 155 (189)
T 1z06_A 95 HAVVFVYDMTNM-ASFHSLPAWIEECKQHLL--ANDIPRILVGNKCDLRSAIQVPTDLAQ-KFA---D------------ 155 (189)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCGGGCCSCHHHHH-HHH---H------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceeCHHHHH-HHH---H------------
Confidence 999999999986 677788888888776532 36799999999999975432 22111 111 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccC---c-chhHHHHHHhhcC
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG---E-ISQVEQFIREQVK 266 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++| + +++++++|.+.++
T Consensus 156 --------------------~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 156 --------------------THSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp --------------------HTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred --------------------HcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 12346899999999 8 9999999988764
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=181.24 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=119.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.++.+.... .++...........++..+.+++|||||++++...+..+++.+|+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSY----DPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 5679999999999999999999987653332 233332223344446667789999999999998889999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .+++.+..|+..+..... ..+.|+++|+||+|+..... .++..+..+
T Consensus 81 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------------------ 139 (181)
T 3t5g_A 81 YILVYSVTSI-KSFEVIKVIHGKLLDMVG--KVQIPIMLVGNKKDLHMERVISYEEGKALAE------------------ 139 (181)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHH------------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcceecHHHHHHHHH------------------
Confidence 9999999987 678888888888876532 25789999999999965433 222221111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 140 ------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 140 ------------------SWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp ------------------HTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred ------------------HhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=178.38 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=112.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+||+++|++|||||||+++|+++.+.. . .++..+.......+++..+.+++|||||+++ ..+++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-L----EKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-C----SSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-c----CCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 456899999999999999999999987643 2 2223333333344466678899999999886 46788999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC--CC--CHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT--AH--TKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~--~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
++++|||+++. .++..+..|+..+.........+.|+++|+||+|+.. .. ..++..+.. ..
T Consensus 75 ~~ilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----~~---------- 139 (178)
T 2iwr_A 75 AVIFVFSLEDE-NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX----AD---------- 139 (178)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH----HH----------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH----Hh----------
Confidence 99999999987 6788887765443322111125789999999999942 21 222222111 11
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 140 ---------------------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 140 ---------------------MKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp ---------------------HSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ---------------------hcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 124679999999999 999999998764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=180.20 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=121.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|.+..+.... .++...........++..+.+.+|||||+.++...+..+++.+|
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcC----CCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 45689999999999999999999987753322 22222222233334566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+..... .++..+..+
T Consensus 92 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 151 (187)
T 2a9k_A 92 GFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAE----------------- 151 (187)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHC--CTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccCccCHHHHHHHHH-----------------
Confidence 99999999986 678888888888776432 25789999999999976432 222222111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 152 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 152 -------------------QWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp -------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=179.19 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=120.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++.......++..+.+.+|||||+.++...+..+++.+|
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 79 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI---GVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQ 79 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCC---SSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce---EEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCC
Confidence 356799999999999999999999887644333322 22333333334566678999999999999888999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .+++....|+..+.... .+.|+++|+||+|+..... .++..+. ..
T Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~------------- 137 (168)
T 1z2a_A 80 ACVLVFSTTDR-ESFEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGL----AK------------- 137 (168)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHH----HH-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccCcccccCHHHHHHH----HH-------------
Confidence 99999999986 56778888888776642 5789999999999975432 2222211 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 138 -------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 138 -------------------RLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp -------------------HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 113478999999999 999999998764
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=182.01 Aligned_cols=163 Identities=24% Similarity=0.233 Sum_probs=115.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeee-------ecccc-ceeEeecc-cCCCccccEEEEeCCCCCCchhh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS-------MEPNE-DTFVLHSE-STKGKIKPVHLVDVPGHSRLRPK 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~-------~~~~~-~~~~~~~~-~~~~~~~~~~l~DtpG~~~~~~~ 132 (267)
...+||+++|++|||||||++.+.+... ....++ ..++. .++..... .+++..+.+++|||||+++++..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC-GGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 4568999999999999999987766432 221110 11111 11111122 44666788999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCCC-----CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 133 LDEFLPQAAGIVFVVDALEF-----LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
+..+++.+|++|+|||++++ ..++..+..|+.++.. ...+.|+++|+||+|+......++..+.++
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~----~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----- 161 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL----TLDDVPIVIQVNKRDLPDALPVEMVRAVVD----- 161 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC----CTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc----ccCCCCEEEEEEchhcccccCHHHHHHHHH-----
Confidence 99999999999999999842 1345566666666522 237899999999999987655544333222
Q ss_pred HHhhhhccccccccccccCCCCCCCccccccccee-EEEEeeeccCc-chhHHHHHHhhc
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++ .++++||++|+ ++++++||.+.+
T Consensus 162 -------------------------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 162 -------------------------------PEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp -------------------------------TTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -------------------------------hcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 1223 78999999999 999999998764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=177.87 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=109.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-hHHhhhccCCE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-KLDEFLPQAAG 142 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~d~ 142 (267)
.+||+++|++|+|||||+++|.+..+......+ .+.+.......+++..+.+.+|||||+.++.. ....+++.+|+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 78 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME---NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDA 78 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCC---CcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCE
Confidence 368999999999999999999876543222221 12333333334567678899999999998876 56677899999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+..... .++..+..+
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------------------ 137 (169)
T 3q85_A 79 FLIVFSVTDR-RSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLARSREVSLEEGRHLAG------------------ 137 (169)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------------------
T ss_pred EEEEEECCCh-HHHHHHHHHHHHHHhccc--CCCCCEEEEeeCcchhhcccCCHHHHHHHHH------------------
Confidence 9999999986 678888899988877532 24799999999999974432 222211111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 138 ------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 138 ------------------TLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 123478999999999 999999998764
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=184.19 Aligned_cols=161 Identities=20% Similarity=0.319 Sum_probs=122.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI---GVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH 82 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSS---CCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc---cceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCC
Confidence 345799999999999999999999987654433322 33343334444666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 83 ~vilv~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 141 (206)
T 2bcg_Y 83 GIIIVYDVTDQ-ESFNGVKMWLQEIDRYA---TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA----D------------- 141 (206)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHHHHH----H-------------
Confidence 99999999986 67888888888776542 25789999999999976432 22221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 142 -------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 142 -------------------ANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp -------------------HTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=181.27 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=116.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCcc--------------------------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKI-------------------------- 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 115 (267)
...++|+++|++|+|||||+++|++..+.....++.. .++......+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIG---ASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS---CEEEEEEEETTC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCcccc---ceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 4678999999999999999999999876543333221 22222222222222
Q ss_pred -----------ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 116 -----------KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 116 -----------~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
..+.+|||||++++...+..+++.+|++++|+|++++ .++.....|+..+... .+.|+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~-~s~~~~~~~~~~i~~~-----~~~piilv~N 155 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS-NTLDRAKTWVNQLKIS-----SNYIIILVAN 155 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHH-----SCCEEEEEEE
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHhh-----CCCcEEEEEE
Confidence 6899999999999999999999999999999999986 6778888888888764 3489999999
Q ss_pred cCCCCCC-CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 185 KTDKVTA-HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 185 K~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
|+|+... ...++..+.++ ..++.++++||++|+ +++++++|.
T Consensus 156 K~D~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~Sa~~~~~i~~l~~~l~ 199 (208)
T 3clv_A 156 KIDKNKFQVDILEVQKYAQ------------------------------------DNNLLFIQTSAKTGTNIKNIFYMLA 199 (208)
T ss_dssp CTTCC-CCSCHHHHHHHHH------------------------------------HTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred CCCcccccCCHHHHHHHHH------------------------------------HcCCcEEEEecCCCCCHHHHHHHHH
Confidence 9994221 22333322222 123479999999999 999999998
Q ss_pred hhc
Q 024474 263 EQV 265 (267)
Q Consensus 263 ~~~ 265 (267)
+.+
T Consensus 200 ~~~ 202 (208)
T 3clv_A 200 EEI 202 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-27 Score=185.87 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=118.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|++|+|||||+++|.++.+.....++. ..........++..+.+++|||||++++...+..+++.+
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 95 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV----FENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----EEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCee----eeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence 4567899999999999999999999987644333322 222222334466677899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|+|+++. .++..+ ..|+..+... ..+.|+++|+||+|+..........+...+....
T Consensus 96 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------ 158 (194)
T 3reg_A 96 DVVLLCFAVNNR-TSFDNISTKWEPEIKHY----IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK------------ 158 (194)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHH----CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH------------
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh------------
Confidence 999999999987 677776 4555555442 2579999999999997532111111122221111
Q ss_pred ccccccCCCCCCCcccccccceeE-EEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVS-VAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.++. ++++||++|+ +++++++|.+.+
T Consensus 159 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 159 --------------------LGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp --------------------HTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------cCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 1123 8999999999 999999998764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=175.73 Aligned_cols=160 Identities=15% Similarity=0.227 Sum_probs=118.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.++|+++|++|+|||||++++.++.+..... ++...........++..+.+.+|||||+.++...+..+++.+|++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 78 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECD----PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 78 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccC----CccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEE
Confidence 4689999999999999999999876543222 222222223333456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+.......+..+.+. .
T Consensus 79 i~v~d~~~~-~~~~~~~~~~~~i~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~---~----------------- 135 (166)
T 2ce2_X 79 LCVFAINNT-KSFEDIHQYREQIKRVKD--SDDVPMVLVGNKSDLAARTVESRQAQDLA---R----------------- 135 (166)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHHH---H-----------------
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEEchhhhhcccCHHHHHHHH---H-----------------
Confidence 999999986 677778888877765421 24799999999999976332221111111 1
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ ++++++||.+.+
T Consensus 136 ---------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 136 ---------------SYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ---------------HHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998765
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=183.14 Aligned_cols=162 Identities=17% Similarity=0.245 Sum_probs=116.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV---GVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCT---TEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCcc---ceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 446789999999999999999999877543322221 23344444444666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+...... ++..+ +. .
T Consensus 101 ~iilV~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~---~------------- 159 (192)
T 2il1_A 101 GIILVYDITKK-ETFDDLPKWMKMIDKYA---SEDAELLLVGNKLDCETDREITRQQGEK-FA---Q------------- 159 (192)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHH-HH---H-------------
Confidence 99999999986 57777777776665432 257999999999999754322 21111 11 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+..++++||++|+ +++++++|.+.+
T Consensus 160 ------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 160 ------------------QITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp ------------------TSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------hcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0124578999999999 999999998764
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=179.26 Aligned_cols=166 Identities=16% Similarity=0.226 Sum_probs=109.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC-CccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
....++|+++|++|+|||||+++|.+..+.....++. +.++......++ +..+.+.+|||||++.+...+..+++.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 81 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI---GADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRG 81 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---C---CCSCEEEEECCSSSCCEEEEEECCC----------CCSTT
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc---ceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhc
Confidence 3467899999999999999999999987654333332 222333333333 445789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCC-CCCCCCcEEEEEecCCCCCCC---CHHHHHHHHHHHHHHHHhhhhcc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH---TKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
+|++|+|+|+++. .+++....|+..+..... ....+.|+++|+||+|+.... ..++..+..+ .
T Consensus 82 ~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~-------- 148 (182)
T 1ky3_A 82 ADCCVLVYDVTNA-SSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----S-------- 148 (182)
T ss_dssp CCEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----H--------
T ss_pred CCEEEEEEECCCh-HHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----h--------
Confidence 9999999999986 677788888877765321 112678999999999995432 1222211111 0
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 149 -----------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 -----------------------LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp -----------------------TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------------cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 224568999999999 999999998764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-27 Score=181.47 Aligned_cols=165 Identities=20% Similarity=0.209 Sum_probs=117.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCC-ccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG-KIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
..+.++|+++|++|+|||||+++|.++.+.....++. +.++......+++ ..+.+++|||||++.+...+..+++.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 79 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI---GLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYG 79 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTT---TSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTT
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCce---eEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhh
Confidence 3466899999999999999999999887643222222 2233333333333 45789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+|++++|+|+++. .+++.+..|+..+...... ..+.| +++|+||+|+..... .++..+.. .
T Consensus 80 ~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~----~---------- 143 (178)
T 2hxs_A 80 AQGVLLVYDITNY-QSFENLEDWYTVVKKVSEE-SETQPLVALVGNKIDLEHMRTIKPEKHLRFC----Q---------- 143 (178)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHHHH-HTCCCEEEEEEECGGGGGGCSSCHHHHHHHH----H----------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcc-cCCCCeEEEEEEccccccccccCHHHHHHHH----H----------
Confidence 9999999999986 5677777777766542110 02455 899999999975432 22221111 1
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ ++++++||.+.+.
T Consensus 144 ----------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 144 ----------------------ENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp ----------------------HHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred ----------------------HcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 123478999999999 9999999988753
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=180.36 Aligned_cols=162 Identities=20% Similarity=0.293 Sum_probs=119.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeE-eecccCCCc---------cccEEEEeCCCCCCchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFV-LHSESTKGK---------IKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~DtpG~~~~~~ 131 (267)
...++|+++|++|+|||||+++|.++.+.....++.. .++. ......++. .+.+.+|||||++++..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG---IDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS---EEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccc---eeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 3457999999999999999999998776443333322 1222 222222332 57899999999999999
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLR 209 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~ 209 (267)
.+..+++.+|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+ ...
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~--- 155 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNE-QSFLNVRNWISQLQMHAY--SENPDIVLCGNKSDLEDQRAVKEEEARE----LAE--- 155 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSS--SSSCCEEEEEECTTCGGGCCSCHHHHHH----HHH---
T ss_pred HHHHHHcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHH----HHH---
Confidence 999999999999999999986 677777888888776432 25789999999999975432 222221 111
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 156 -----------------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 156 -----------------------------KYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp -----------------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------------------HcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=178.93 Aligned_cols=161 Identities=19% Similarity=0.308 Sum_probs=112.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccc-eeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
...++|+++|++|+|||||+++|.+..+... ..++. +.++.......++..+.+++|||||++++...+..+++.+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV---GIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCC---SCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCce---eeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 4567999999999999999999998876321 11211 2233333333466667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+ + ..
T Consensus 85 d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~-~---~~------------ 144 (180)
T 2g6b_A 85 HALLLLYDVTNK-ASFDNIQAWLTEIHEYA---QHDVALMLLGNKVDSAHERVVKREDGEK-L---AK------------ 144 (180)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECCSTTSCCCSCHHHHHH-H---HH------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccCcccccCHHHHHH-H---HH------------
Confidence 999999999986 56777788887776642 26789999999999976442 222211 1 11
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 145 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 145 --------------------EYGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp --------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-27 Score=184.11 Aligned_cols=161 Identities=18% Similarity=0.228 Sum_probs=123.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|+|||||+++|+++.+.....++. +.++.......++..+.+.+|||||++.+...+..+++.+|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV---GIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEE---TTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCe---eeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 456799999999999999999999887655554444 22333334444566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+ +. .
T Consensus 98 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~---~------------- 156 (191)
T 3dz8_A 98 GFILMYDITNE-ESFNAVQDWATQIKTYS---WDNAQVILVGNKCDMEEERVVPTEKGQL-LA---E------------- 156 (191)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHHH-HH---H-------------
Confidence 99999999986 67888888888776642 26899999999999965432 221111 11 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 157 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 157 -------------------QLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp -------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999988764
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=184.87 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=118.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|.+|+|||||+++|.++.+..... ++...........++..+.+.+|||||++++...+..+++.+
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD----PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC----CCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC----CccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 3577899999999999999999999987653322 222222233444456667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|||+++. .++..+..|+..+..... ..++|+++|+||+|+...... .+..+ +. .
T Consensus 97 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~---~------------ 157 (201)
T 3oes_A 97 HGYVLVYSVTSL-HSFQVIESLYQKLHEGHG--KTRVPVVLVGNKADLSPEREVQAVEGKK-LA---E------------ 157 (201)
T ss_dssp CEEEEEEETTCH-HHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHH-HH---H------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCccccccCHHHHHH-HH---H------------
Confidence 999999999987 678888888888876432 257899999999999754432 21111 11 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 158 --------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 158 --------------------SWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp --------------------HHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=183.88 Aligned_cols=175 Identities=14% Similarity=0.101 Sum_probs=118.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|.+|+|||||+++++++.+.....+ +..........+++..+.+.+|||||++++...+..+++.+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP----TVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC----CSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC----eecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 46778999999999999999999998776433322 22333333344566677888999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|||+++. .++.... .|+..+... ..+.|+++|+||+|+.......+..+.. ....++...
T Consensus 103 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~---------~~~~v~~~~ 168 (204)
T 4gzl_A 103 DVFLICFSLVSP-ASFENVRAKWYPEVRHH----CPNTPIILVGTKLDLRDDKDTIEKLKEK---------KLTPITYPQ 168 (204)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHH----CSSCCEEEEEECHHHHTCHHHHHHHHHT---------TCCCCCHHH
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEechhhccchhhhhhhhcc---------ccccccHHH
Confidence 999999999987 6777776 566555543 2578999999999997543221111100 000000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ..+....+...++++||++|+ +++++++|.+.+
T Consensus 169 ~------------~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 169 G------------LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp H------------HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred H------------HHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0 001111233469999999999 999999998764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-26 Score=180.76 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=113.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.++.+.... .++...........++..+.+.+|||||++++...+..+++++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEY----IPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 456789999999999999999999987754332 2333322223333456667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|||+++. .++.... .|+..+.... .+.|+++|+||+|+....... ..+.+ .....+....
T Consensus 93 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~---~~~~~------~~~~~v~~~~ 158 (201)
T 2q3h_A 93 DIFLLCFSVVSP-SSFQNVSEKWVPEIRCHC----PKAPIILVGTQSDLREDVKVL---IELDK------CKEKPVPEEA 158 (201)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----SSSCEEEEEECGGGGGCHHHH---HHHHT------TTCCCCCHHH
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhchhhh---hhhcc------cccccCCHHH
Confidence 999999999986 6777776 5776665532 479999999999997532110 00000 0000000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ..+....+...|+++||++|+ +++++++|.+.+
T Consensus 159 ~------------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 159 A------------KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp H------------HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H------------HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 0 001110122379999999999 999999998764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-26 Score=178.98 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=117.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||+++|.++.+.....++. .........+++..+.+.+|||||++++...+..+++.+|+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV----FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSS----CCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----cceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 45799999999999999999999887644333222 22222233445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|||+++. .++.... .|+..+.... .+.|+++|+||+|+....... +.+.. . ....++..+.
T Consensus 93 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~---~~~~~----~--~~~~v~~~~~- 157 (194)
T 2atx_A 93 FLICFSVVNP-ASFQNVKEEWVPELKEYA----PNVPFLLIGTQIDLRDDPKTL---ARLND----M--KEKPICVEQG- 157 (194)
T ss_dssp EEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTCCEEEEEECTTSTTCHHHH---HHHTT----T--TCCCCCHHHH-
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhcccccch---hhccc----c--cCcccCHHHH-
Confidence 9999999986 6677776 6776666532 478999999999997542110 00000 0 0000000000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+....+...|+++||++|+ +++++++|.+.+
T Consensus 158 -----------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 158 -----------QKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp -----------HHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------HHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 000000112368999999999 999999998763
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=180.39 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=117.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-hHHhhhcc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-KLDEFLPQ 139 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~ 139 (267)
....++|+++|++|||||||+++|++........ ..++.+.......+++..+.+.+|||+|+..+.. ++..+++.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE---PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT---TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC---CCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 3466899999999999999999997643321111 1122233333334567778899999999988765 67788999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
+|++|+|||+++. .++..+..|+.++..... ..++|+++|+||+|+..... .++..+ + ..
T Consensus 97 ~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~-~---a~----------- 158 (195)
T 3cbq_A 97 GDAFLIVFSVTDR-RSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLARSREVSLEEGRH-L---AG----------- 158 (195)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCTTTCCSCHHHHHH-H---HH-----------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEeechhccccCCcCHHHHHH-H---HH-----------
Confidence 9999999999986 678888889888776431 25789999999999975432 222211 1 11
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 159 ---------------------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 159 ---------------------TLSCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp ---------------------HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------HhCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 112478999999999 999999998764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=181.81 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=120.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+.+|||||+.++...+..+++.+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 81 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI---GADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGA 81 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC---SEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc---cceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCC
Confidence 3467899999999999999999999887643332222 2333333444566667899999999999988888999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCC-CCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++|+|+|+++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+....
T Consensus 82 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------------- 145 (207)
T 1vg8_A 82 DCCVLVFDVTAP-NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS--------------- 145 (207)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---------------
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh---------------
Confidence 999999999986 567777788777765321 011478999999999997432 22222111110
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+.++++||++|+ ++++++||.+.+
T Consensus 146 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 --------------------KNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp --------------------TTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224568999999999 999999998764
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=183.50 Aligned_cols=161 Identities=22% Similarity=0.286 Sum_probs=115.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|+++.+.....++. +.++......+++..+.+.+|||||+.++...+..+++.+|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI---GVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC---------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcc---cceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 456899999999999999999999887644333222 22333333444566678999999999888888889999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+...... .+..+.. .
T Consensus 100 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------- 158 (200)
T 2o52_A 100 GALLVYDITSR-ETYNSLAAWLTDARTLA---SPNIVVILCGNKKDLDPEREVTFLEASRFA----Q------------- 158 (200)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHT---CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECCCcccccccCHHHHHHHH----H-------------
Confidence 99999999986 67788888888776542 267899999999999654322 2221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 159 -------------------~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 159 -------------------ENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp -------------------HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-26 Score=179.39 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=115.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|++|||||||+++|+++.+..... ++..........+++..+.+++|||||+++++.. ..+++.+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ 92 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYD----PNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA 92 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccC----CCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhC
Confidence 4567899999999999999999999887643332 2222222223334666788999999999988775 6799999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|||+++. .+++.+..|+..+.........+.|+++|+||+|+..... .++..+.. .
T Consensus 93 ~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------ 155 (187)
T 3c5c_A 93 HAFLVVYSVDSR-QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA----G------------ 155 (187)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH----H------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH----H------------
Confidence 999999999986 6788888888887763210115789999999999965432 22222111 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeee-ccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASG-LTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++|| ++|+ +++++++|.+.+
T Consensus 156 --------------------~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 156 --------------------RFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp --------------------HHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred --------------------HcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 12347999999 8999 999999998765
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-26 Score=179.10 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=108.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||++++.++.+.....++. ..........++..+.+++|||||++++...+..+++.+|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV----FDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCee----eeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 467899999999999999999999887643332222 2111222334556678899999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH--------HHHHHHHHHHHHHhhh
Q 024474 142 GIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF--------IRKQMEKEIDKLRASR 212 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~--------~~~~l~~~~~~~~~~~ 212 (267)
++++|+|+++. .+++.+. .|+..+.... .+.|+++|+||+|+........ ..+...+....
T Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~----- 151 (182)
T 3bwd_D 82 VFILAFSLISK-ASYENVSKKWIPELKHYA----PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL----- 151 (182)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH-----
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH-----
Confidence 99999999986 6677776 5666655431 4789999999999865422100 00011110010
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...|+++||++|+ +++++++|.+.+
T Consensus 152 --------------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 152 --------------------------IGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp --------------------------HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------------cCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 112378999999999 999999998764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-26 Score=175.12 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=117.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+|+|.++.+.....++... ........++..+.+.+|||||+.++...+..+++.+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 77 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED----TYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHA 77 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE----EEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccc----cEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCE
Confidence 4579999999999999999999998765443333321 111222335556789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .+++....|+..+..... ...+.|+++|+||+|+........ ........
T Consensus 78 ~i~v~d~~~~-~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~--~~~~~~~~---------------- 137 (172)
T 2erx_A 78 FILVYSITSR-QSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQS--SEAEALAR---------------- 137 (172)
T ss_dssp EEEEEETTCH-HHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCH--HHHHHHHH----------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCH--HHHHHHHH----------------
Confidence 9999999986 566666677666554211 114789999999999975433211 01111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ ++++++||.+.++
T Consensus 138 ----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 138 ----------------TWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ----------------HHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ----------------HhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 123478999999999 9999999998764
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-26 Score=184.04 Aligned_cols=162 Identities=18% Similarity=0.270 Sum_probs=117.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCc----------cccEEEEeCCCCCCchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGK----------IKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~DtpG~~~~~~ 131 (267)
...++|+++|++|+|||||+++|++..+.....++.. .++......+++. .+.+++|||||++++..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG---IDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEE---EEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCcee---EEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 4568999999999999999999999876544333332 1222222222222 57899999999999999
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLR 209 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~ 209 (267)
.+..+++.+|++|+|||+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+. ..
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~-~s~~~~~~~l~~i~~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~--- 169 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAY--CENPDIVLIGNKADLPDQREVNERQAREL----AD--- 169 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCT--TTCCEEEEEEECTTCGGGCCSCHHHHHHH----HH---
T ss_pred HHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--cCCCCEEEEEECCccccccccCHHHHHHH----HH---
Confidence 999999999999999999986 667777778776654321 16789999999999975432 2221111 11
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 170 -----------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 170 -----------------------------KYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp -----------------------------HTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----------------------------HCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 113468999999999 999999998764
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-26 Score=183.60 Aligned_cols=161 Identities=20% Similarity=0.283 Sum_probs=117.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI---GVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC---------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---cceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 445799999999999999999999987644333322 22333333444566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 88 ~vilV~D~~~~-~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------- 146 (223)
T 3cpj_B 88 GALIVYDISKS-SSYENCNHWLSELRENA---DDNVAVGLIGNKSDLAHLRAVPTEESKTFA----Q------------- 146 (223)
T ss_dssp EEEEEEC-CCH-HHHHHHHHHHHHHHHHC---C--CEEEEEECCGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccCHHHHHHHH----H-------------
Confidence 99999999987 67888888888876642 25789999999999975432 22221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ +++++++|.+.+
T Consensus 147 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 147 -------------------ENQLLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp -------------------HTTCEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123578999999999 999999998765
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-26 Score=178.30 Aligned_cols=161 Identities=16% Similarity=0.218 Sum_probs=108.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|.+|+|||||+++|.++.+.... .++...........++..+.+.+|||||+.++...+..+++.+|
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCcccc----CCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 35579999999999999999999987654322 22222222233334566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.... ..++..+. ...
T Consensus 95 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~------------- 154 (190)
T 3con_A 95 GFLCVFAINNS-KSFADINLYREQIKRVKD--SDDVPMVLVGNKCDLPTRTVDTKQAHEL----AKS------------- 154 (190)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHH----HHH-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHhC--CCCCeEEEEEECCcCCcccCCHHHHHHH----HHH-------------
Confidence 99999999986 567777777777655321 2478999999999997632 22222211 111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.++.++++||++|+ ++++++||.+.+
T Consensus 155 -------------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 155 -------------------YGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp -------------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12368999999999 999999998754
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-26 Score=177.74 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=115.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. .........+++..+.+.+|||||++.+...+..+++.+|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 80 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----FENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 80 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----EEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----ceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCc
Confidence 466899999999999999999999987654333322 1111222334566678999999999999988999999999
Q ss_pred EEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++|+|+|+++. .++..+ ..|+..+... ..+.|+++|+||+|+...... .. .+.. .....++..+.
T Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~--~~-~~~~------~~~~~v~~~~~ 146 (184)
T 1m7b_A 81 AVLICFDISRP-ETLDSVLKKWKGEIQEF----CPNTKMLLVGCKSDLRTDVST--LV-ELSN------HRQTPVSYDQG 146 (184)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHH----CTTCEEEEEEECGGGGGCHHH--HH-HHHT------TTCCCCCHHHH
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHH----CCCCCEEEEEEcchhhcchhh--Hh-hhhh------cccCCCCHHHH
Confidence 99999999986 667777 5666665543 257899999999999743110 00 0000 00000000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeec-cCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGL-TGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~-i~~l~~~l~~~~ 265 (267)
. .+....+...|+++||+ +|+ +++++++|.+.+
T Consensus 147 ~------------~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 147 A------------NMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp H------------HHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred H------------HHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 0 00000123579999999 688 999999998753
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-26 Score=182.85 Aligned_cols=164 Identities=14% Similarity=0.095 Sum_probs=116.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. .........+++..+.+.+|||||++++...+..+++.+|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 82 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----FDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSS----CCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc----ceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence 456899999999999999999999887644333322 2222223334666689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH------HHHHHHHHHHHHHhhhhc
Q 024474 142 GIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF------IRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~------~~~~l~~~~~~~~~~~~~ 214 (267)
++|+|||+++. .++.... .|+..+.... .+.|+++|+||+|+........ ..+...+....
T Consensus 83 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~------- 150 (212)
T 2j0v_A 83 IFVLAFSLISK-ASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ------- 150 (212)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH-------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH-------
Confidence 99999999986 6677776 6766665532 4789999999999865421100 01111111111
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...|+++||++|+ +++++++|.+.+
T Consensus 151 ------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 151 ------------------------IGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp ------------------------HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------------cCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 112378999999999 999999998764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=181.05 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=116.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|||||||+++|+++.+.....++. .........+++..+.+.+|||||++++...+..+++.+|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV----FENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----EEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCee----eeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 467899999999999999999999987654333322 2222233344666789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSA-ASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++|+|||+++. .++.. ...|+..+... ..+.|+++|+||+|+........ . +.. .....++..+.
T Consensus 101 ~~i~v~d~~~~-~s~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~~~--~-~~~------~~~~~v~~~~~ 166 (214)
T 3q3j_B 101 AVLLCFDISRP-ETVDSALKKWRTEILDY----CPSTRVLLIGCKTDLRTDLSTLM--E-LSH------QKQAPISYEQG 166 (214)
T ss_dssp EEEEEEETTCT-HHHHHHHTHHHHHHHHH----CTTSEEEEEEECGGGGGCHHHHH--H-HHH------TTCCCCCHHHH
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhccchhhhh--h-hcc------cccCccCHHHH
Confidence 99999999987 67777 57777777664 25899999999999975311000 0 000 00000000000
Q ss_pred cccccCCCCCCCccccccccee-EEEEeeeccCc--chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE--ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~--i~~l~~~l~~~~ 265 (267)
. .+.. ..++ .|+++||++|+ +++++++|.+.+
T Consensus 167 ~------------~~~~-~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 167 C------------AIAK-QLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp H------------HHHH-HHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred H------------HHHH-HcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 0 0000 1234 79999999997 999999987754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-26 Score=177.22 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=117.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.++.+.....++. .........+++..+.+++|||||++++...+..+++.+|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 79 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV----FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 79 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCS----CCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcc----cceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcE
Confidence 45799999999999999999999877644333322 22222223346667889999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|+|+++. .++.... .|+..+.... .+.|+++|+||+|+....... +.+.. . ....++..+..
T Consensus 80 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~---~~~~~----~--~~~~v~~~~~~ 145 (186)
T 1mh1_A 80 SLICFSLVSP-ASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTI---EKLKE----K--KLTPITYPQGL 145 (186)
T ss_dssp EEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTSCEEEEEECHHHHTCHHHH---HHHHH----T--TCCCCCHHHHH
T ss_pred EEEEEECCCh-hhHHHHHHHHHHHHHHhC----CCCCEEEEeEcccccccchhh---hhhcc----c--ccccCCHHHHH
Confidence 9999999986 5677776 5666655431 478999999999987542211 11110 0 00000000000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+....+...++++||++|+ +++++++|.+.+
T Consensus 146 ------------~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 146 ------------AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp ------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------HHHHhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 01111122479999999999 999999998875
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=180.97 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=101.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|+++.+..... ++..........+++..+.+.+|||||++++...+..+++.+|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 107 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYT----PTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDAS 107 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------C----CCCCEEEEEEEEETTEEEEEEEEEC---------------CEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC----CccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence 456899999999999999999999877543322 2222222233344666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++++|||+++. .++..+. .|+..+... ..++|+++|+||+|+.......+.. .. . ....++..+.
T Consensus 108 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~---~~----~--~~~~v~~~~~ 173 (214)
T 2j1l_A 108 VLLLCFDVTSP-NSFDNIFNRWYPEVNHF----CKKVPIIVVGCKTDLRKDKSLVNKL---RR----N--GLEPVTYHRG 173 (214)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHH----CSSCCEEEEEECGGGGSCHHHHHHH---HH----T--TCCCCCHHHH
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhhccchhhhhh---cc----c--ccCcccHHHH
Confidence 99999999986 6777776 566666543 2578999999999997653221111 00 0 0000000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. .+....+...++++||++|+ +++++++|.+.+
T Consensus 174 ~------------~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 174 Q------------EMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp H------------HHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H------------HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0 01110122379999999999 999999998764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-26 Score=178.75 Aligned_cols=164 Identities=14% Similarity=0.180 Sum_probs=117.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||+++|.++.+.....++.. .........++..+.+.+|||||+.++...+..+++.+
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 80 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE----DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCC----EEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccc----cceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence 34678999999999999999999998876543333322 11122223356667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|||+++. .+++....|+..+..... ...+.|+++|+||+|+..... .++..+ + ..
T Consensus 81 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~-~---~~------------- 141 (199)
T 2gf0_A 81 HAFILVFSVTSK-QSLEELGPIYKLIVQIKG-SVEDIPVMLVGNKCDETQREVDTREAQA-V---AQ------------- 141 (199)
T ss_dssp SEEEEEEETTCH-HHHHTTHHHHHHHHHHHS-CGGGSCEEEEEECTTCSSCSSCHHHHHH-H---HH-------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCCccccCHHHHHH-H---HH-------------
Confidence 999999999986 566666666555443211 014789999999999975332 221111 1 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ ++++++||.+.+.
T Consensus 142 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 142 -------------------EWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp -------------------HHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred -------------------HhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 112478999999999 9999999988753
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=178.48 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=115.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||+++|.++.+.....+ +...........++..+.+.+|||||++++...+..+++.+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVP----TVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTC
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCC----cccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCC
Confidence 34567999999999999999999999876433222 22222222233456667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|+|+++. .++... ..|+..+... ..+.|+++|+||+|+...... .+.+.+ +. ...++..+
T Consensus 98 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~---~~~~~~----~~--~~~v~~~~ 163 (207)
T 2fv8_A 98 DVILMCFSVDSP-DSLENIPEKWVPEVKHF----CPNVPIILVANKKDLRSDEHV---RTELAR----MK--QEPVRTDD 163 (207)
T ss_dssp CEEEEEEETTCH-HHHHHHHHTHHHHHHHH----STTCCEEEEEECGGGGGCHHH---HHHHHH----TT--CCCCCHHH
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEchhhhccccc---hhhhhh----cc--cCCCCHHH
Confidence 999999999986 567777 4555555442 257899999999999754221 111111 00 00000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. .+....+...++++||++|+ +++++++|.+.+
T Consensus 164 ~~------------~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 164 GR------------AMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp HH------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------------HHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 01111122378999999999 999999998763
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=187.79 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=120.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....+||+++|.+|||||||+++++.+.+.....++. +.++.......++..+.+.+|||||++.+...+..+++.+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL---GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTT---TEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 3456899999999999999999977655433222222 2233333334456668899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|||+++. .++..+..|+..+.... .++|+++|+||+|+.......+..+
T Consensus 89 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~--------------------- 142 (221)
T 3gj0_A 89 QCAIIMFDVTSR-VTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIV--------------------- 142 (221)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHHHHHS----TTCCEEEEEECTTSSSCSSCGGGCC---------------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECCccccccccHHHHH---------------------
Confidence 999999999986 67888888888887752 5789999999999975432111000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.. ..++.|+++||++|+ ++++++||.+.+
T Consensus 143 --------------~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 143 --------------FHR-KKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp --------------HHH-HHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred --------------HHH-HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 224579999999999 999999998764
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=177.79 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=115.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-chhhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-LRPKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-~~~~~~~~~~~~ 140 (267)
...+||+++|.+|||||||+|+|++.... ......+++.++......+++..+.+.+|||+|... ++.....+++.+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~--~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDS--MDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCT--TCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 45689999999999999999999974321 111122233344344445567777889999999876 455566778899
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|+|||+++. .+++.+..|+..+..... ..++|+++|+||+|+...+..... .......
T Consensus 113 ~~~ilVydvt~~-~sf~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~r~v~~~--e~~~~a~-------------- 173 (211)
T 2g3y_A 113 DAYLIVYSITDR-ASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVS--EGRACAV-------------- 173 (211)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHTSGG--GTTSCEEEEEECTTCGGGCCSCHH--HHHHHHH--------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhC--CCCCcEEEEEEChHHhcCceEeHH--HHHHHHH--------------
Confidence 999999999986 678888888877765321 257999999999999754322110 0000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ +++++++|.+.+
T Consensus 174 ------------------~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 174 ------------------VFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=176.61 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=118.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.++.+..... ++..........+++..+.+.+|||||+.+ ...+..+++.+
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 99 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD----PTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG 99 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccC----CCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence 4567899999999999999999999987643322 222222222334466668899999999998 77888999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|||+++. .+++.+..|+..+..... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 100 d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~------------ 160 (196)
T 2atv_A 100 EGFVLVYDITDR-GSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLDHSRQVSTEEGEKLA----T------------ 160 (196)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHT--TSCCCEEEEEECGGGGGGCCSCHHHHHHHH----H------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhhC--CCCCcEEEEEECcccccccccCHHHHHHHH----H------------
Confidence 999999999986 677778888777765321 25789999999999976432 22221111 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc--chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 161 --------------------~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 161 --------------------ELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp --------------------HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 113479999999996 999999998764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=177.89 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=116.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|.+|+|||||+++|.++.+.....++. +..+. ....+++..+.+.+|||||++++...+..+++.+|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSS---CCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc---cceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 456799999999999999999999987654333322 11221 12334566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++++|||+++. .++... ..|+..+... ..+.|+++|+||+|+....... +.+.+ . ....++..+.
T Consensus 99 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~---~~~~~----~--~~~~v~~~~~ 164 (201)
T 2gco_A 99 VILMCFSIDSP-DSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRQDEHTR---RELAK----M--KQEPVRSEEG 164 (201)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHH----STTCCEEEEEECGGGTTCHHHH---HHHHT----T--TCCCCCHHHH
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEecHHhhcCccch---hhhcc----c--ccCcCCHHHH
Confidence 99999999986 567777 4555544442 2578999999999997542211 11110 0 0000000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. .+....+...++++||++|+ +++++++|.+.+
T Consensus 165 ~------------~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 165 R------------DMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp H------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H------------HHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0 01111122378999999999 999999998763
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-26 Score=180.46 Aligned_cols=163 Identities=12% Similarity=0.158 Sum_probs=90.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--CcccceeeeeccccceeEeecccCCCc--cccEEEEeCCCCCCchhhHHhhhc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTKGK--IKPVHLVDVPGHSRLRPKLDEFLP 138 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~ 138 (267)
..++|+++|++|+|||||+++|.+. .+.....++. +.++......+++. .+.+.+|||||++++...+..+++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTS---GVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp EEEEEEEC-------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCcc---ceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 4579999999999999999999987 5432222222 11233333334554 678999999999999999999999
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC-CCC--HHHHHHHHHHHHHHHHhhhhcc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT-AHT--KEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~--~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.+|++|+|+|+++. .++..+..|+..+.........+.|+++|+||+|+.. ... .++..+.. .
T Consensus 96 ~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~----~--------- 161 (208)
T 2yc2_C 96 GVYYAILVFDVSSM-ESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA----T--------- 161 (208)
T ss_dssp CCCEEEEEEETTCH-HHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH----H---------
T ss_pred hCcEEEEEEECCCH-HHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH----H---------
Confidence 99999999999987 6788888888888764310015789999999999975 222 22222111 1
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeecc-Cc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT-GE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++ |+ +++++++|.+.+
T Consensus 162 -----------------------~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 162 -----------------------TNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp -----------------------HTTCEEEECCC-------CHHHHHHHHHH
T ss_pred -----------------------HcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 1125799999999 99 999999998754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=178.33 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=116.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|+|||||+++|.+..+.....++.. ..+ .....+++..+.+.+|||||++++...+..+++.+|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~---~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF---ENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE---EEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc---eeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 4568999999999999999999999876543333221 112 222334566688999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++|+|||+++. .++..+ ..|+..+... ..+.|+++|+||+|+...... .. .+.. .....++..+.
T Consensus 102 ~~ilv~D~~~~-~s~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~--~~-~~~~------~~~~~v~~~~~ 167 (205)
T 1gwn_A 102 AVLICFDISRP-ETLDSVLKKWKGEIQEF----CPNTKMLLVGCKSDLRTDVST--LV-ELSN------HRQTPVSYDQG 167 (205)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHH----CTTCEEEEEEECGGGGGCHHH--HH-HHHT------TTCCCCCHHHH
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHH----CCCCCEEEEEechhhccchhh--hh-hhcc------cccCCCCHHHH
Confidence 99999999986 667777 5676666543 257899999999999743110 00 0000 00000000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeec-cCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGL-TGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~-i~~l~~~l~~~~ 265 (267)
. .+....+...|+++||+ +|+ +++++++|.+.+
T Consensus 168 ~------------~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 168 A------------NMAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp H------------HHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred H------------HHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 0 00100123579999999 677 999999988753
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-26 Score=182.56 Aligned_cols=165 Identities=16% Similarity=0.231 Sum_probs=115.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....+||+++|.+|+|||||+|+|+++.+......+... ..........++..+.+.+|||||++.+...+..+++.+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA--VNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTE--EEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce--eeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 346789999999999999999999987754322222111 111111222233336899999999999988899999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|+|+|+++. .++.....|+..+.... ..+.|+++|+||+|+........ +.. ..+
T Consensus 86 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~--~~~----~~~------------ 143 (218)
T 4djt_A 86 SGAILFFDVTSR-ITCQNLARWVKEFQAVV---GNEAPIVVCANKIDIKNRQKISK--KLV----MEV------------ 143 (218)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHH---CSSSCEEEEEECTTCC----CCH--HHH----HHH------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCH--HHH----HHH------------
Confidence 999999999987 67777788877776542 25689999999999975321100 001 000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. ..++.++++||++|+ +++++++|.+.+
T Consensus 144 ---------------~~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 144 ---------------LK-GKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp ---------------TT-TCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred ---------------HH-HcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 00 234579999999999 999999998764
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=189.40 Aligned_cols=162 Identities=22% Similarity=0.390 Sum_probs=118.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|.+|+|||||+++|.++.+... . ++.. ..... +....+.+++|||||++.+...+..+++.+|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~----~-pT~~-~~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 235 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----I-PTIG-FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 235 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE----E-EETT-EEEEE--EEETTEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc----c-cccc-eEEEE--EecCcEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 445999999999999999999998775321 1 2111 11111 22344789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|||+++. .++.....++..++.... ..++|+++|+||+|+......+++.+.+.. .
T Consensus 236 vilV~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~i~~~~~~-------~----------- 294 (329)
T 3o47_A 236 LIFVVDSNDR-ERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGL-------H----------- 294 (329)
T ss_dssp EEEEEETTCS-SSHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTC-------T-----------
T ss_pred EEEEEECCch-HHHHHHHHHHHHHHhhhc--cCCCeEEEEEECccCCcccCHHHHHHHhch-------h-----------
Confidence 9999999987 789999999988887532 258999999999999877665443332210 0
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+. ...++.++++||++|+ +++++++|.+.+.
T Consensus 295 ------------~~-~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 295 ------------SL-RHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp ------------TC-CSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred ------------hh-hcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 00 0245689999999999 9999999988764
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-27 Score=187.12 Aligned_cols=163 Identities=20% Similarity=0.325 Sum_probs=113.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|+|||||+|+|+++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI---GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHH---CCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc---cceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 45799999999999999999999877643322222 333444444446666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+........ ...
T Consensus 109 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~Dl~~~~~v~~---------------------~~~-- 161 (199)
T 3l0i_B 109 IIVVYDVTDQ-ESFNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTTKKVVDY---------------------TTA-- 161 (199)
T ss_dssp EEECC-CCCS-HHHHHHHHHHHHHHSCC----CCSEEEEC-CCSSCC--CCCCS---------------------CC---
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhc---cCCCCEEEEEECccCCccccCCH---------------------HHH--
Confidence 9999999987 77888888888876642 25799999999999965422100 000
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+.. ..++.++++||++|+ ++++++||.+.+.
T Consensus 162 ----------~~~~~-~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 162 ----------KEFAD-SLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp ----------CHHHH-TTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred ----------HHHHH-HcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00000 223568999999999 9999999988764
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=172.16 Aligned_cols=173 Identities=13% Similarity=0.157 Sum_probs=111.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhH---Hhhh
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL---DEFL 137 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~---~~~~ 137 (267)
..+.+||+++|++|||||||++++.+..... .......+........ .++..+.+++|||||++++.... ..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDI--SNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEE--CCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeec--cCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 4577899999999999999999988754322 2111222222221111 12455789999999999987776 8999
Q ss_pred ccCCEEEEEEeCCCCC-CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH-HHHHHhhhhcc
Q 024474 138 PQAAGIVFVVDALEFL-PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE-IDKLRASRSAV 215 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 215 (267)
+++|++|+|||+++.. .++..+..|+.++... ..+.|+++|+||+|+............+... ...+....
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~--- 166 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV----NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG--- 166 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc----CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh---
Confidence 9999999999999841 2445556666665432 2689999999999997542211111111111 11110000
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ...++.|+++||++ + +++++++|.+.+
T Consensus 167 -------------------~--~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 167 -------------------L--EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp -------------------C--TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred -------------------h--hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 0 02356899999999 9 999999998764
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=167.64 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=110.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.+..+.....++... ++.......++ ..+.+|||||++++...+..++..+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQ---HIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVT 79 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSST---TCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeE---eeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhC
Confidence 357789999999999999999999998765433322211 11111112233 4688999999999998888899999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. ........+..+.. .+.|+++|+||+|+... ..+++.+.+. .. .
T Consensus 80 d~~i~v~d~~~~--~~~~~~~~l~~~~~------~~~p~ilv~nK~Dl~~~-~~~~~~~~~~----~~----~------- 135 (178)
T 2lkc_A 80 DIVILVVAADDG--VMPQTVEAINHAKA------ANVPIIVAINKMDKPEA-NPDRVMQELM----EY----N------- 135 (178)
T ss_dssp CEEEEEEETTCC--CCHHHHHHHHHHGG------GSCCEEEEEETTTSSCS-CHHHHHHHHT----TT----T-------
T ss_pred CEEEEEEECCCC--CcHHHHHHHHHHHh------CCCCEEEEEECccCCcC-CHHHHHHHHH----hc----C-------
Confidence 999999999875 23333344443322 57899999999999764 2222221111 00 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.........+.++++||++|+ +++++++|.+.+
T Consensus 136 ------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 136 ------------LVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp ------------CCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred ------------cChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 000111234689999999999 999999998653
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=171.42 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=112.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-chhhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-LRPKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-~~~~~~~~~~~~ 140 (267)
...+||+++|++|||||||+|+|++.... ......+++.++......+++..+.+.+|||+|... .+.....+++.+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~ 81 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDS--MDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 81 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCC--C----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCC--cCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence 35679999999999999999999964321 111122233344334444567777889999999876 445566788899
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|||+++. .+++....|+..+..... ..+.|+++|+||+|+...+.... +.... +..
T Consensus 82 ~~~i~v~dv~~~-~s~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~r~v~~--~~~~~-~a~------------- 142 (192)
T 2cjw_A 82 DAYLIVYSITDR-ASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRXREVSV--SEGRA-XAV------------- 142 (192)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHTT--TSCCCEEEEEECTTCGGGCCSCH--HHHHH-HHH-------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhhC--CCCCeEEEEEechhhhccccccH--HHHHH-HHH-------------
Confidence 999999999986 678888888776655321 25789999999999965332211 00000 000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..|+++||++|+ +++++++|.+.+
T Consensus 143 ------------------~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 143 ------------------VFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp ------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 123478999999999 999999998754
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=176.30 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=107.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC--CcccceeeeeccccceeEeecccC---CCccccEEEEeCCCCCCchhhHHhhhc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSEST---KGKIKPVHLVDVPGHSRLRPKLDEFLP 138 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~DtpG~~~~~~~~~~~~~ 138 (267)
.+||+++|++|||||||+++|++. .+.....++. +.++....... ++..+.+.+|||+|++++...+..+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~---g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 78 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATV---GIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMT 78 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------C---SEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceec---cEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHcc
Confidence 469999999999999999999985 2222122221 12222111111 234578999999999988888888999
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
++|++++|+|++++..++..+..|+.++.... .+.|+++|+||+|+...... ..........+ .
T Consensus 79 ~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~----~----- 142 (184)
T 2zej_A 79 QRALYLAVYDLSKGQAEVDAMKPWLFNIKARA----SSSPVILVGTHLDVSDEKQR---KACMSKITKEL----L----- 142 (184)
T ss_dssp HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC----TTCEEEEEEECGGGCCHHHH---HHHHHHHHHHT----T-----
T ss_pred CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC----CCCcEEEEEECCCcccchhh---HHHHHHHHHHH----H-----
Confidence 99999999999886335777888888876542 47899999999999643221 11111111111 0
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccC-c-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG-E-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g-~-i~~l~~~l~~~~ 265 (267)
... .+.....++++||++| + +++|++.|.+.+
T Consensus 143 ---~~~------------~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 143 ---NKR------------GFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp ---TCT------------TSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred ---Hhc------------CCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 000 0012235899999999 4 999998887654
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-25 Score=195.68 Aligned_cols=209 Identities=14% Similarity=0.159 Sum_probs=114.3
Q ss_pred cchhhhHHH---HHHHHHHHHHhhhcCCc--hHHH----HHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHH
Q 024474 11 EGMEQWKKE---LEEWLNRGIEFINQIPP--TQLY----IACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLF 81 (267)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl 81 (267)
.....|++. +.+.++..+||.++.-+ .... +..+...+..+.....+....+++++|+++|.+|+|||||+
T Consensus 171 ~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLl 250 (476)
T 3gee_A 171 VRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLL 250 (476)
T ss_dssp HHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEECCCCCCHHHHH
Confidence 334444443 45666777777654322 1111 33333334444433334444567789999999999999999
Q ss_pred HHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHH--------hhhccCCEEEEEEeCCCCC
Q 024474 82 YQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD--------EFLPQAAGIVFVVDALEFL 153 (267)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~ 153 (267)
|+|++... ..++...+++.+.......+++ +.+.+|||||+.++...++ .+++.+|++++|+|++++
T Consensus 251 n~L~~~~~--a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~- 325 (476)
T 3gee_A 251 NTLLGQER--AIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTE- 325 (476)
T ss_dssp HHCC--------------------CEEEEETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTC-
T ss_pred HHHhCCCC--cccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCC-
Confidence 99998752 1233333334433333333344 6799999999987665443 367899999999999986
Q ss_pred CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCc
Q 024474 154 PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAF 233 (267)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (267)
.+...... ...++... .+.|+++|+||+|+........ +.+.+ .
T Consensus 326 ~s~~~~~~-~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~----~------------------------- 369 (476)
T 3gee_A 326 RLDDELTE-IRELKAAH----PAAKFLTVANKLDRAANADALI--RAIAD----G------------------------- 369 (476)
T ss_dssp SSGGGHHH-HHHHHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHH----H-------------------------
T ss_pred cchhhhHH-HHHHHHhc----CCCCEEEEEECcCCCCccchhH--HHHHh----c-------------------------
Confidence 44432212 22222221 3689999999999976543321 11111 0
Q ss_pred ccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 234 SFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 234 ~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
....++++||++|+ +++|+++|.+.+.
T Consensus 370 ------~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 370 ------TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ------HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ------CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 01358999999999 9999999988753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-25 Score=168.71 Aligned_cols=153 Identities=22% Similarity=0.211 Sum_probs=101.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch------hhHHhhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR------PKLDEFL 137 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~~~~~ 137 (267)
.++|+++|++|+|||||+|+|.+..+.....+ ..+..........++ ..+++|||||+.++. .....++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWP---GVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC--------CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCC---CcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHH
Confidence 46899999999999999999998764322221 111111111111222 579999999998774 3345566
Q ss_pred c--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 138 P--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 138 ~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
+ ++|++++|+|+++. +....|+.++.. .+.|+++|+||+|+..........+.+.+
T Consensus 78 ~~~~~~~~i~v~D~~~~----~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------------ 135 (165)
T 2wji_A 78 INEKPDLVVNIVDATAL----ERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEK------------ 135 (165)
T ss_dssp HHHCCSEEEEEEETTCH----HHHHHHHHHHHH------TTCCEEEEEECHHHHHHTTCCCCHHHHHH------------
T ss_pred hcCCCCEEEEEecCCch----hHhHHHHHHHHh------cCCCEEEEEEchHhccccChhhHHHHHHH------------
Confidence 5 89999999999873 344556666544 46899999999998532211000011111
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+..++++||++|+ +++++++|.+.++
T Consensus 136 -----------------------~~~~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 136 -----------------------ILGVKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp -----------------------HHTSCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred -----------------------HhCCCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 112468999999999 9999999998765
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-24 Score=170.85 Aligned_cols=160 Identities=20% Similarity=0.269 Sum_probs=103.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCC----------CCCchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG----------HSRLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG----------~~~~~~ 131 (267)
.+.++|+++|++|+|||||+|+|++..+......+... +.... ....+ ..+.+||||| ++.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-t~~~~--~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGK-TQTLN--FYIIN---DELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEE--EEEET---TTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCc-eeeEE--EEEEC---CcEEEEECCCCCccccCHHHHHHHHH
Confidence 46789999999999999999999987643222222211 11111 11112 2699999999 445556
Q ss_pred hHHhhhccC---CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ~~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
.+..+++.+ |++++|+|+++. .+.... ++...+.. .+.|+++|+||+|+..........+.+.+.+..
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~--~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~- 165 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHA-PSNDDV--QMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI- 165 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSC-CCHHHH--HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC-
T ss_pred HHHHHHhhhhcCCEEEEEEECCCC-CCHHHH--HHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc-
Confidence 677777776 999999999886 333332 22222321 678999999999998765444333333321110
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ ++++++||.+.++
T Consensus 166 ------------------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 166 ------------------------------DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ------------------------------CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ------------------------------cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 234579999999999 9999999988764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-26 Score=182.21 Aligned_cols=175 Identities=14% Similarity=0.105 Sum_probs=117.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.++.+.....++ ..........+++..+.+++|||||++++...+..+++.+
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT----VFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 102 (204)
Confidence 356789999999999999999999987754332222 2222222333456667888999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|+|+++. .++.... .|+..+... ..+.|+++|+||+|+.......+....... ..+....
T Consensus 103 d~iilv~D~~~~-~s~~~~~~~~~~~l~~~----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---------~~v~~~~ 168 (204)
T 3th5_A 103 DVFLICFSLVSP-ASFENVRAKWYPEVRHH----CPNTPIILVGTKLDLRDDKDTIEKLKEKKL---------TPITYPQ 168 (204)
Confidence 999999999987 5677765 555544432 137899999999999754322111110000 0000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. .+....+...++++||++|+ +++++++|.+.+
T Consensus 169 ~~------------~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 169 GL------------AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 00 01111222378999999999 999999998754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=168.34 Aligned_cols=164 Identities=19% Similarity=0.257 Sum_probs=104.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc---------hhh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL---------RPK 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~---------~~~ 132 (267)
.+.++|+++|++|+|||||+|+|++..+. ......++.......... ....+.+|||||+.+. ...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~---~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD---VQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE---EECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc---cCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHHH
Confidence 45789999999999999999999998753 122222223333222222 2367999999998421 112
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHH
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLR 209 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~ 209 (267)
+..++..+|++|+|+|+++. .++. ....|+..+... ..+.|+++|+||+|+....... ...+.+.+....
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~l~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 174 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQ-CGLTIKEQINLFYSIKSV----FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN-- 174 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCT-TSSCHHHHHHHHHHHHTC----C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH--
T ss_pred HHHhhccccEEEEEEecccc-cCcchHHHHHHHHHHHHh----hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh--
Confidence 34457889999999999986 3433 334556555442 1478999999999997654321 111122221111
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+.++++||++|+ +++++++|.+.+
T Consensus 175 ----------------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 175 ----------------------------VKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp ----------------------------CCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------------------cCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 0112679999999999 999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-24 Score=165.26 Aligned_cols=154 Identities=20% Similarity=0.328 Sum_probs=103.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh--------HH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------LD 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~~ 134 (267)
+..+|+++|++|+|||||+|+|.+..+. .+....+++.++......+++ ..+.+|||||+.++... ..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAA--IVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAW 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCS--CCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--eeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHH
Confidence 5679999999999999999999987532 112222223333333333343 46899999998764321 12
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.+++.+|++++|+|+++. .++. ...|+..+.... ..++|+++|+||+|+.....
T Consensus 79 ~~~~~ad~~i~v~D~~~~-~s~~-~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~--------------------- 132 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTT-DAVD-PAEIWPEFIARL---PAKLPITVVRNKADITGETL--------------------- 132 (172)
T ss_dssp HHHHTCSEEEEEEETTTC-CCCS-HHHHCHHHHHHS---CTTCCEEEEEECHHHHCCCC---------------------
T ss_pred HHHHhCCEEEEEEECCCC-CCHH-HHHHHHHHHHhc---ccCCCEEEEEECccCCcchh---------------------
Confidence 467899999999999886 3443 345555555432 25789999999999843210
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
. +.. .....++++||++|+ +++++++|.+.+.
T Consensus 133 -----------------~--~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 133 -----------------G--MSE-VNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp -----------------E--EEE-ETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred -----------------h--hhh-ccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0 000 124579999999999 9999999988753
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-24 Score=171.01 Aligned_cols=170 Identities=19% Similarity=0.251 Sum_probs=109.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----------chh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----------LRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----------~~~ 131 (267)
...++|+++|.+|+|||||+|+|++..... ......+++......... ......+.+|||||+.. +..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA-FASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSS-CTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcce-eecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 467899999999999999999999876211 111122222222222111 13346899999999644 244
Q ss_pred hHHhhhcc---CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
....+++. +|++++|+|+++. +......+...+.. .+.|+++|+||+|+..........+.+.+.+..+
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRP---LTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSC---CCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCC---CCHHHHHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 55566666 7889999999875 22333333333332 5789999999999976544433444444433332
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.... ......++++||++|+ +++++++|.+.++
T Consensus 177 ~~~~-------------------------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 177 RDAG-------------------------YAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHT-------------------------CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred hhcc-------------------------cCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 1100 0245689999999999 9999999998765
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=165.37 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=105.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCC----------CCCchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG----------HSRLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG----------~~~~~~ 131 (267)
...++|+++|++|+|||||+|+|++..+.. ...+. ..+...... . ....+.+||||| ...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~-~~t~~~~~~--~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTP-GKTRSINFY--L---VNSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSC-CCCCCEEEE--E---ETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCC-CCccCeEEE--E---ECCcEEEEECCCCccccCChhhHHHHHH
Confidence 456799999999999999999999876321 11111 111111111 1 123689999999 344555
Q ss_pred hHHhhhccC---CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ~~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
.+..+++.+ |++++|+|+++... . ....+...+.. .+.|+++|+||+|+..........+.+.+....
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~-~--~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~- 164 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQ-D--SDLMMVEWMKS-----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK- 164 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCC-H--HHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS-
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCC-H--HHHHHHHHHHH-----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh-
Confidence 666677665 99999999987522 1 11122222221 478999999999998665554444444432221
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+.++++||++|+ ++++++||.+.++
T Consensus 165 ------------------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 165 ------------------------------YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ------------------------------SCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ------------------------------cCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 234579999999999 9999999998764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=177.10 Aligned_cols=163 Identities=20% Similarity=0.225 Sum_probs=109.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch----------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR---------- 130 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~---------- 130 (267)
..+...|+++|.+|||||||+|+|++..+.. ++....++......... .+....+.+|||||+.++.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i--~s~~~~tT~~~~~~~~~-~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI--ISPKAGTTRMRVLGVKN-IPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEE-ETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccc--cCCCCCceeeEEEEEEe-cCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 3455689999999999999999999987531 11111112221111111 1214689999999997654
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC-CCCCHHHHHHHHHHHHHHHH
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV-TAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~l~~~~~~~~ 209 (267)
.....+++.+|++++|+|+++. .+......|+..+.. .+.|+++|+||+|+. .........+.+.+.+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~------~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~---- 152 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEG-WRPRDEEIYQNFIKP------LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH---- 152 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGG------GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC----
T ss_pred HHHHHHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHh------cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc----
Confidence 4566788999999999999986 445555444544432 578999999999997 3333322222222100
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ +++|+++|.++++
T Consensus 153 -----------------------------~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 153 -----------------------------PELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp -----------------------------TTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -----------------------------cCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 123468999999999 9999999998875
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-24 Score=162.65 Aligned_cols=152 Identities=20% Similarity=0.216 Sum_probs=100.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-------chhhHHhhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-------LRPKLDEFL 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-------~~~~~~~~~ 137 (267)
+||+++|++|+|||||++++.+..+.. .....+++..........++ ..+.+|||||+.. +...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV--VADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee--ccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHH
Confidence 589999999999999999999876421 11122222222222222233 4789999999887 345566788
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
+.+|++++|+|+++. ......++.+.+.. .+.|+++|+||+|+..... .. .
T Consensus 78 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~------~~----~----------- 128 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAE---LTQADYEVAEYLRR-----KGKPVILVATKVDDPKHEL------YL----G----------- 128 (161)
T ss_dssp TTCSEEEEEEESSSC---CCHHHHHHHHHHHH-----HTCCEEEEEECCCSGGGGG------GC----G-----------
T ss_pred HhCCEEEEEEECCCc---ccHhHHHHHHHHHh-----cCCCEEEEEECcccccchH------hH----H-----------
Confidence 999999999999885 22333444444442 5689999999999875310 00 0
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
. +.. .+...++++||++|+ +++++++|.+.++
T Consensus 129 --------------~--~~~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 129 --------------P--LYG-LGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp --------------G--GGG-GSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred --------------H--HHh-CCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 0 011 111158999999999 9999999998774
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=185.96 Aligned_cols=204 Identities=18% Similarity=0.207 Sum_probs=127.8
Q ss_pred CcchhhhHHH---HHHHHHHHHHhhhcCCch-H-H---HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHH
Q 024474 10 PEGMEQWKKE---LEEWLNRGIEFINQIPPT-Q-L---YIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLF 81 (267)
Q Consensus 10 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl 81 (267)
+.....|+.. +.+.+++.++|.++ -+. . . .+..+...+..+.....+....++.++|+++|.||+|||||+
T Consensus 182 ~~~~~~~r~~l~~~~~~ie~~idf~ee-i~~~~~~i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLl 260 (482)
T 1xzp_A 182 RDFVDSLRRELIEVLAEIRVELDYPDE-IETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLL 260 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCcc-ccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHH
Confidence 3444556544 56667788888775 221 1 1 122233333333322223333345689999999999999999
Q ss_pred HHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC-Cchh--------hHHhhhccCCEEEEEEeCCCC
Q 024474 82 YQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS-RLRP--------KLDEFLPQAAGIVFVVDALEF 152 (267)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~-~~~~--------~~~~~~~~~d~ii~v~d~~~~ 152 (267)
|+|++.... .++.+++++.+.......+++ ..+.+|||||+. ++.. ....+++.+|++|+|+|++++
T Consensus 261 n~L~~~~~a--~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~ 336 (482)
T 1xzp_A 261 NRLLNEDRA--IVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP 336 (482)
T ss_dssp HHHHHHTBC--CCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC
T ss_pred HHHHCCCCC--ccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCC
Confidence 999987531 233344444433333333343 579999999998 6542 245688999999999999886
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCC
Q 024474 153 LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQA 232 (267)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (267)
.+.+.. ..+ +.+ .+.|+++|+||+|+......+++ .+ +.
T Consensus 337 -~s~~~~-~il-~~l-------~~~piivV~NK~DL~~~~~~~~~----~~----~~----------------------- 375 (482)
T 1xzp_A 337 -LDEEDR-KIL-ERI-------KNKRYLVVINKVDVVEKINEEEI----KN----KL----------------------- 375 (482)
T ss_dssp -CCHHHH-HHH-HHH-------TTSSEEEEEEECSSCCCCCHHHH----HH----HH-----------------------
T ss_pred -CCHHHH-HHH-HHh-------cCCCEEEEEECcccccccCHHHH----HH----Hh-----------------------
Confidence 344332 222 222 36799999999999754332221 11 00
Q ss_pred cccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 233 FSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 233 ~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+++++||++|+ +++|+++|.+.+
T Consensus 376 ------~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 376 ------GTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp ------TCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred ------cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 112358999999999 999999998754
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=175.08 Aligned_cols=168 Identities=15% Similarity=0.198 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh---hHHhhhccCCE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---KLDEFLPQAAG 142 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~d~ 142 (267)
||+++|+.|||||||++++.++.++. ...++.++.+.-... + +..+++++|||||+++|+. ....|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~-~~~~~~~Tig~~~~~---v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL-DTLYLESTSNPSLEH---F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG-GGTTCCCCCSCCCEE---E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC-ccceecCeeeeeeEE---E-ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988664322 122222322211111 1 2347899999999999964 46889999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|||+++. +.....|+.+++........++|+++|+||+|+.......+..+.+.....+ .
T Consensus 76 ~IlV~Ditd~---~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~---~----------- 138 (331)
T 3r7w_B 76 LVYVIDSQDE---YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGE---E----------- 138 (331)
T ss_dssp EEEECCCSSC---TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHH---T-----------
T ss_pred EEEEEECCch---HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHH---H-----------
Confidence 9999999984 3444444443332110012679999999999997543322222222221111 0
Q ss_pred cccCCCCCCCcccccc---cceeEEEEeeeccCcchhHHHHHHhhcCC
Q 024474 223 DFTLGIPGQAFSFSQC---HNKVSVAEASGLTGEISQVEQFIREQVKP 267 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~i~~l~~~l~~~~~p 267 (267)
+.+. ..++.|+++||+++.+.+.+..|.+.+.|
T Consensus 139 ------------la~~~~~~~~i~f~eTSAkd~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 139 ------------LLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIP 174 (331)
T ss_dssp ------------TSSSSCSCCCEEEECCCSSSSHHHHHHHHHHTTSST
T ss_pred ------------HHhhcccccCceEEEeccCCCcHHHHHHHHHHHHHh
Confidence 1111 24678999999985588888888776654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=174.21 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=108.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc-----hhhHHhhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL-----RPKLDEFL 137 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~-----~~~~~~~~ 137 (267)
..+||+++|++|||||||+++++++..... .....++ .........+++ .+.+++|||||++++ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~T-i~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGAT-IDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCC-CSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCc-cceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 457999999999999999999988732110 1112222 112222222223 478999999999988 67788899
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHH---HHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEY---LYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
+++|++|+|||+++. .+++.+..| +..+... ..++|+++|+||+|+..........+.....+.++..
T Consensus 79 ~~ad~vi~V~D~t~~-~s~~~l~~~~~~l~~l~~~----~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~---- 149 (307)
T 3r7w_A 79 QMVQVLIHVFDVEST-EVLKDIEIFAKALKQLRKY----SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS---- 149 (307)
T ss_dssp TTCSEEEEEEETTCS-CHHHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccCCEEEEEEECCCh-hhHHHHHHHHHHHHHHHHh----CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHH----
Confidence 999999999999987 667776555 4444332 2579999999999997532222111122222222210
Q ss_pred cccccccccccCCCCCCCcccccccc--eeEEEEeeeccCcchhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHN--KVSVAEASGLTGEISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~i~~l~~~l~~~~ 265 (267)
..+ ++.++++||+++.+.+++..+...+
T Consensus 150 -----------------------~~g~~~~~~~~tSa~~~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 150 -----------------------EFGFPNLIGFPTSIWDESLYKAWSQIVCSL 179 (307)
T ss_dssp -----------------------TTTCCSCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred -----------------------HcCCCCeEEEEeeecCChHHHHHHHHHHHH
Confidence 011 3689999999955766666665544
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-23 Score=177.30 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=117.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|.+|+|||||+++++++.+.....++ +.........+++..+.+.+|||||++.+...+..+++.+
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 227 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT----VFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCC----SEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTC
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCc----ccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCC
Confidence 356789999999999999999999987764433222 2222223334466667888999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|||+++. .++.... .|+..+.... .++|+++|+||+|+.......+ .+.. . ....++...
T Consensus 228 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~---~~~~----~--~~~~v~~~~ 293 (332)
T 2wkq_A 228 DVFLICFSLVSP-ASFHHVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIE---KLKE----K--KLTPITYPQ 293 (332)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTSCEEEEEECHHHHTCHHHHH---HHHH----T--TCCCCCHHH
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhhC----CCCcEEEEEEchhcccccchhh---hccc----c--ccccccHHH
Confidence 999999999986 5677765 5655555431 4889999999999865421111 1100 0 000000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. .+....+...|+++||++|+ +++++++|.+.+
T Consensus 294 ~~------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 294 GL------------AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HH------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------------HHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 00 01111122379999999999 999999998763
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-24 Score=189.36 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=118.0
Q ss_pred cchhhhHHH---HHHHHHHHHHhhhcCCch-----HHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHH
Q 024474 11 EGMEQWKKE---LEEWLNRGIEFINQIPPT-----QLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFY 82 (267)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~ 82 (267)
.....|++. +.+.+++.+||.++.... ...+..+...+..+.....+....+.+++|+++|++|+|||||+|
T Consensus 163 ~~~~~~r~~l~~~~a~iEa~iDf~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln 242 (462)
T 3geh_A 163 HPIRQLRANCLDILAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 242 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSSSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHHHHH
Confidence 334455444 677888899986643221 111333333333333222333344567899999999999999999
Q ss_pred HHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHh--------hhccCCEEEEEEeCCCCCC
Q 024474 83 QLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDE--------FLPQAAGIVFVVDALEFLP 154 (267)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~~ 154 (267)
+|++..+. .++...+++.++......+++ ..+.+|||||+.++....+. +++.+|++++|+|++++ .
T Consensus 243 ~L~~~~~a--~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~-~ 317 (462)
T 3geh_A 243 AWSQSDRA--IVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATG-W 317 (462)
T ss_dssp HHHHHHBS--CCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCCCSCSEEEEEEETTTC-S
T ss_pred HHhCCCcc--cccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCC-C
Confidence 99986431 222233333333222222333 57899999998776554333 57889999999999986 2
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcc
Q 024474 155 NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFS 234 (267)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (267)
+... ..++..+ ...|+++|+||+|+....... .
T Consensus 318 ~~~~-~~i~~~l--------~~~piivV~NK~Dl~~~~~~~-----------------------~--------------- 350 (462)
T 3geh_A 318 TTGD-QEIYEQV--------KHRPLILVMNKIDLVEKQLIT-----------------------S--------------- 350 (462)
T ss_dssp CHHH-HHHHHHH--------TTSCEEEEEECTTSSCGGGST-----------------------T---------------
T ss_pred CHHH-HHHHHhc--------cCCcEEEEEECCCCCcchhhH-----------------------H---------------
Confidence 2222 3333322 336999999999997542210 0
Q ss_pred cccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 235 FSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 235 ~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.....++++||++|+ +++|+++|.+.+
T Consensus 351 ~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 351 LEYPENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 0111134468999999999 999999998865
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=163.99 Aligned_cols=154 Identities=20% Similarity=0.176 Sum_probs=104.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch------hhHHhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR------PKLDEF 136 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~~~~ 136 (267)
+.++|+++|++|||||||+++|++..+. ....+..+..........+ +..+.+|||||+.++. .....+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~---~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVY---IGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEE---EEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc---ccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHH
Confidence 4579999999999999999999986542 2222222222222222222 3689999999998874 345566
Q ss_pred hc--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 137 LP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 137 ~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
++ .+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+..........+.+. .
T Consensus 81 ~~~~~~~~~i~v~d~~~----~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~---~-------- 139 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA----LERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLE---K-------- 139 (188)
T ss_dssp HHHHCCSEEEEEEEGGG----HHHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCCCHHHHH---H--------
T ss_pred HhccCCCEEEEEecchh----HHHHHHHHHHHHh------cCCCEEEEEEhhhccccccchHHHHHHH---H--------
Confidence 64 4999999999875 4556667666654 5789999999999854321110011111 1
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.+.
T Consensus 140 ------------------------~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 140 ------------------------ILGVKVVPLSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp ------------------------HHTSCEEECBGGGTBSHHHHHHHHHHHHT
T ss_pred ------------------------HhCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 112468999999998 9999999987653
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-23 Score=172.10 Aligned_cols=150 Identities=18% Similarity=0.151 Sum_probs=102.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh----------hHH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP----------KLD 134 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~----------~~~ 134 (267)
++|+++|.+|||||||+|+|++... .+...++.+.+........++ ..+.+|||||+.++.+ ...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~---~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~ 76 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ---RVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAA 76 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE---EEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---CccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHH
Confidence 5899999999999999999999764 233333333333333333333 4799999999987764 345
Q ss_pred hhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 135 EFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 135 ~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
.++ +.+|++|+|+|+++. +....+...+. ..+.|+++|+||+|+..........+.+.+
T Consensus 77 ~~~~~~~~d~vi~VvDas~~----~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~--------- 137 (256)
T 3iby_A 77 QSVIDLEYDCIINVIDACHL----ERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISIDTEKLES--------- 137 (256)
T ss_dssp HHHHHSCCSEEEEEEEGGGH----HHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEECHHHHHH---------
T ss_pred HHHhhCCCCEEEEEeeCCCc----hhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHHHHHHHHH---------
Confidence 566 889999999999873 22223333332 257899999999998643321111111111
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++++||++|+ +++|+++|.+.
T Consensus 138 --------------------------~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 138 --------------------------LLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp --------------------------HHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred --------------------------HcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 123579999999999 99999999874
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=170.60 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=105.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKLD 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~~ 134 (267)
+..+|+++|.+|+|||||+|+|++..+.. ++..+.++....... .......+++|||||+.+ +.....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i--vs~~~~tTr~~i~~i--~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP--ISPRPQTTRKRLRGI--LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEE--EEETTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee--ecCCCCceeEEEEEE--EEeCCcEEEEecCccccchhhHHHHHHHHHHH
Confidence 34579999999999999999999987531 111111122111111 122346899999999887 344566
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.+++.+|++++|+|++++ +.....|+.+.+... ..+.|+++|+||+|+..... .+ .+.+..+
T Consensus 82 ~~l~~ad~il~VvD~~~~---~~~~~~~i~~~l~~~---~~~~p~ilV~NK~Dl~~~~~--~~----~~~~~~~------ 143 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHP---PTPEDELVARALKPL---VGKVPILLVGNKLDAAKYPE--EA----MKAYHEL------ 143 (301)
T ss_dssp HHTSSCSEEEEEEETTSC---CCHHHHHHHHHHGGG---TTTSCEEEEEECGGGCSSHH--HH----HHHHHHT------
T ss_pred HHHhcCCEEEEEEECCCC---CChHHHHHHHHHHhh---cCCCCEEEEEECcccCCchH--HH----HHHHHHh------
Confidence 788999999999999875 233345665555431 13789999999999975422 11 1111111
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ +++++++|.+.++
T Consensus 144 ------------------------~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 144 ------------------------LPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp ------------------------STTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred ------------------------cCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 011258999999999 9999999998764
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-23 Score=170.69 Aligned_cols=153 Identities=23% Similarity=0.283 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh------hHHhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP------KLDEF 136 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~------~~~~~ 136 (267)
+.++|+++|++|+|||||+|+|++..+. +...++.+.... ...+......+.+|||||+..+.. ....+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~---~~~~pg~tv~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~ 78 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY---VANWPGVTVEKK--EGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDY 78 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE---EEECTTSCCEEE--EEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc---ccCCCCceEEEE--EEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHH
Confidence 4579999999999999999999987653 222222222222 222222346899999999987764 23455
Q ss_pred h--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 137 L--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 137 ~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
+ ..+|++++|+|+++. +....++.++.. .+.|+++|+||+|+..........+.+.+
T Consensus 79 ~~~~~~d~ii~V~D~t~~----~~~~~~~~~l~~------~~~pvilv~NK~Dl~~~~~i~~~~~~l~~----------- 137 (258)
T 3a1s_A 79 LLKGDADLVILVADSVNP----EQSLYLLLEILE------MEKKVILAMTAIDEAKKTGMKIDRYELQK----------- 137 (258)
T ss_dssp HHHSCCSEEEEEEETTSC----HHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCBCHHHHHH-----------
T ss_pred HhhcCCCEEEEEeCCCch----hhHHHHHHHHHh------cCCCEEEEEECcCCCCccchHHHHHHHHH-----------
Confidence 5 589999999999885 233345555544 57999999999998543211100111111
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 138 ------------------------~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 138 ------------------------HLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp ------------------------HHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------------HcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 123579999999999 999999998754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-23 Score=171.67 Aligned_cols=151 Identities=25% Similarity=0.262 Sum_probs=102.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch------hhHHhhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR------PKLDEFL 137 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~~~~~ 137 (267)
.++|+++|++|||||||+|+|++..... ...++.+.... ...+.. ...+.+|||||+.++. .....++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v---~~~pg~tv~~~--~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV---GNWPGVTVERK--SGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC---CSSSCCCCSCE--EEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc---cCCCCCcEEEE--EEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH
Confidence 4689999999999999999999875322 12222122111 122233 5689999999998875 3456666
Q ss_pred c--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 138 P--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 138 ~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
. .+|++++|+|+++. +....|..++.. .+.|+++|+||+|+..........+.+.+
T Consensus 77 ~~~~~d~vi~V~D~t~~----e~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~------------ 134 (272)
T 3b1v_A 77 LSQRADSILNVVDATNL----ERNLYLTTQLIE------TGIPVTIALNMIDVLDGQGKKINVDKLSY------------ 134 (272)
T ss_dssp HTTCCSEEEEEEEGGGH----HHHHHHHHHHHH------TCSCEEEEEECHHHHHHTTCCCCHHHHHH------------
T ss_pred hcCCCCEEEEEecCCch----HhHHHHHHHHHh------cCCCEEEEEEChhhCCcCCcHHHHHHHHH------------
Confidence 5 59999999999873 334455555544 57899999999998532211100111111
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 135 -----------------------~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 135 -----------------------HLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp -----------------------HHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred -----------------------HcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 113468999999999 999999998865
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-23 Score=173.20 Aligned_cols=154 Identities=24% Similarity=0.224 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh----------h
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP----------K 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~----------~ 132 (267)
+.++|+++|.+|+|||||+|+|++..+ .+...++++...........+ ..+.+|||||+.++.. .
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~---~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i 76 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ---RVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQI 76 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE---EEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc---ccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHH
Confidence 457999999999999999999999764 333333333333333333333 5789999999987662 1
Q ss_pred HHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 133 LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 133 ~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
...++ +.+|++++|+|+++. +....+...+.. .++|+++|+||+|+..........+.+.+
T Consensus 77 ~~~~~~~~~~d~ii~VvD~~~~----~~~~~~~~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~------- 139 (274)
T 3i8s_A 77 ACHYILSGDADLLINVVDASNL----ERNLYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIEIDALSA------- 139 (274)
T ss_dssp HHHHHHHTCCSEEEEEEEGGGH----HHHHHHHHHHHH------HTCCEEEEEECHHHHHHTTEEECHHHHHH-------
T ss_pred HHHHHhhcCCCEEEEEecCCCh----HHHHHHHHHHHh------cCCCEEEEEECccchhhhhHHHHHHHHHH-------
Confidence 23333 789999999999873 333344444433 47899999999998543221111111111
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+++++++||++|+ +++|+++|.+.++
T Consensus 140 ----------------------------~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 140 ----------------------------RLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ----------------------------HHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred ----------------------------hcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 123479999999999 9999999988754
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=173.36 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=105.9
Q ss_pred CCCCEEEEEcCC---------CCCHHHHHHHHHcC---CcccceeeeeccccceeEeeccc--------------CCCcc
Q 024474 62 KKSTTIVLAGLS---------GSGKTVLFYQLRDG---STHQGTVTSMEPNEDTFVLHSES--------------TKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~---------~~GKSsLl~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 115 (267)
...+||+++|.+ |||||||+++|+++ .+.....++.. +.++...... +++..
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLS--TSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEEC--HHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccc--ccccceeEeecccccccccccccccCCcE
Confidence 456899999999 99999999999984 33222222210 1111111111 34566
Q ss_pred ccEEEEe-----------------------CCCCCCchhhHHhhhc---------------------cCCEEEEEEeCCC
Q 024474 116 KPVHLVD-----------------------VPGHSRLRPKLDEFLP---------------------QAAGIVFVVDALE 151 (267)
Q Consensus 116 ~~~~l~D-----------------------tpG~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~ 151 (267)
+.+++|| ++|++++...+..+++ ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 5555555555556665 7999999999988
Q ss_pred C-CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCC
Q 024474 152 F-LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPG 230 (267)
Q Consensus 152 ~-~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (267)
. ..+++.+..|+..+..... ..++|+++|+||+|+...... +...+...
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~--~~~~piilV~NK~Dl~~~~~v----~~~~~~~~------------------------ 224 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLA--KTKKPIVVVLTKCDEGVERYI----RDAHTFAL------------------------ 224 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHH--HTTCCEEEEEECGGGBCHHHH----HHHHHHHH------------------------
T ss_pred CchhhHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccccccHHH----HHHHHHHH------------------------
Confidence 4 1478888888888765311 257899999999999643211 11111000
Q ss_pred CCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 231 QAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 231 ~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...++.++++||++|+ +++++++|.+.+
T Consensus 225 -------~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 225 -------SKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp -------TSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------hcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 0124578999999999 999999998765
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=159.37 Aligned_cols=159 Identities=20% Similarity=0.296 Sum_probs=114.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.++|+++|++|||||||+++|.+..+.....++. +.++......+++..+.+.+|||||++.++..+..+++.++++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~---~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI---GVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCC---SCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 4699999999999999999999987543222221 2223333344466667899999999998888888899999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+..... ..+... ...
T Consensus 82 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~i~~v~nK~Dl~~~~~~~~~~a~~----l~~--------------- 138 (199)
T 2f9l_A 82 LLVYDIAKH-LTYENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTDEARA----FAE--------------- 138 (199)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHH----HHH---------------
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccCcCHHHHHH----HHH---------------
Confidence 999999886 45666667776654431 25789999999999975432 222111 111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|. +++++++|.+.+
T Consensus 139 -----------------~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 139 -----------------KNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123568999999999 999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=159.21 Aligned_cols=139 Identities=35% Similarity=0.539 Sum_probs=104.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhcc--
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQ-- 139 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~-- 139 (267)
.+.++|+++|++|||||||+++|.+..+.. ...+..++... +.....+.+|||||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc-ccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 567899999999999999999999987533 22222222110 1134689999999999988888877766
Q ss_pred --CCEEEEEEeCC-CCCCchHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 140 --AAGIVFVVDAL-EFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 140 --~d~ii~v~d~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
+|++|+|+|++ +. .++.....|+..++..... ...+.|+++|+||+|+.......++.+.+.+.+..++.
T Consensus 117 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~l~~ 190 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDP-KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE 190 (193)
T ss_dssp GGEEEEEEEEETTCCH-HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCCc-hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 89999999998 54 5778888888887754211 12579999999999999988999999999988887754
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=175.59 Aligned_cols=172 Identities=20% Similarity=0.178 Sum_probs=113.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc--ee-eeeccc-----cceeEee----cccC---CCccccEEEEeCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TV-TSMEPN-----EDTFVLH----SEST---KGKIKPVHLVDVPG 125 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~-~~~~~~-----~~~~~~~----~~~~---~~~~~~~~l~DtpG 125 (267)
..+.++|+++|++|+|||||+|+|++...... .. .+.... ...+... .... ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 45678999999999999999999998543211 00 000000 0000000 0000 11225799999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
+++|......++..+|++|+|+|++++ .+.....+++..+... ...|+++|+||+|+.......+..+.+.+.+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~-~~~~qt~~~~~~~~~~-----~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEP-FPQPQTREHFVALGII-----GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSC-SSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCC-CCcHHHHHHHHHHHHc-----CCCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 3456666666544332 3358999999999975432222222222211
Q ss_pred HHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 206 DKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
... ...+++++++||++|+ +++|+++|.+.+++
T Consensus 159 ~~~-----------------------------~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 159 KGT-----------------------------WAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTS-----------------------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred Hhh-----------------------------CCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 100 0224579999999999 99999999987653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-22 Score=155.76 Aligned_cols=159 Identities=21% Similarity=0.291 Sum_probs=115.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.++++++|++|||||||++++.+..+.....++. +.++......+++..+.+.+|||+|+.++...+..+++.++++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~---~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI---GVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCC---SEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---ceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 4799999999999999999999987643332222 2233333344466667788999999999888888899999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|.++. .+++.+..|+..+.... ..+.|+++|+||+|+..... ....... ..
T Consensus 106 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l----~~--------------- 162 (191)
T 1oix_A 106 LLVYDIAKH-LTYENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTDEARAF----AE--------------- 162 (191)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HH---------------
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHHH----HH---------------
Confidence 999999885 45666666776654421 25789999999999975332 2211111 11
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++++ +++++++|.+.+
T Consensus 163 -----------------~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 -----------------KNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 123578899999999 999999998764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=167.68 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=106.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh---------h
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---------K 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---------~ 132 (267)
...++++++|++|+|||||+|+|++... .......++......... .....+.+|||||+.+... .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~---~~~~~~~~t~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP---EIASYPFTTRGINVGQFE--DGYFRYQIIDTPGLLDRPISERNEIEKQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC---EEECCTTCSSCEEEEEEE--ETTEEEEEEECTTTSSSCSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCeeeceeEEEEE--ecCceEEEEeCCCccccchhhhhHHHHHH
Confidence 4678999999999999999999998763 222222222222222211 1235799999999865321 1
Q ss_pred HHhhhccCCEEEEEEeCCCCCC-chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
...+...+|++++|+|+++... ++.....|+..+.... .+.|+++|+||+|+......++ ..+.+.
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~~~~~~~~----~~~~~~----- 306 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVADEENIKR----LEKFVK----- 306 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTCCHHHHHH----HHHHHH-----
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccCChHHHHH----HHHHHH-----
Confidence 2234456999999999887521 5677778887776532 3789999999999975422211 111111
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ +++|+++|.+.+
T Consensus 307 ---------------------------~~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 307 ---------------------------EKGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp ---------------------------HTTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred ---------------------------hcCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 112358999999999 999999998765
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=157.49 Aligned_cols=159 Identities=21% Similarity=0.309 Sum_probs=95.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCC-----------CCCchhhH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG-----------HSRLRPKL 133 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG-----------~~~~~~~~ 133 (267)
++|+++|++|+|||||+++|++..+.....++. +... ...... .+.+||||| ++.+...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 72 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV---TRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEI 72 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC---TTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc---ccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHH
Confidence 589999999999999999999987643332211 1111 111111 689999999 44555566
Q ss_pred Hhhhcc-CCEEEEEEeCCCCCCchHHH-HHHHHH--------HHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 134 DEFLPQ-AAGIVFVVDALEFLPNCSAA-SEYLYD--------ILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 134 ~~~~~~-~d~ii~v~d~~~~~~~~~~~-~~~l~~--------~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
..+++. ++++++|+++.+. .++... ..|... +.... ...+.|+++|+||+|+.... .+ ..++
T Consensus 73 ~~~~~~~~~~~~~v~~v~d~-~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~--~~---~~~~ 144 (190)
T 2cxx_A 73 VHFIEDNAKNIDVAVLVVDG-KAAPEIIKRWEKRGEIPIDVEFYQFL--RELDIPTIVAVNKLDKIKNV--QE---VINF 144 (190)
T ss_dssp HHHHHHHGGGCCEEEEEEET-THHHHHHHHHHHTTCCCHHHHHHHHH--HHTTCCEEEEEECGGGCSCH--HH---HHHH
T ss_pred HHHHHhhhccCCEEEEEEcc-hhhhhHHHhhhccCccHHHHHHHHHH--HhcCCceEEEeehHhccCcH--HH---HHHH
Confidence 667665 5544444444443 334444 333321 11110 12578999999999997654 11 1222
Q ss_pred HHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 204 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+.. .+. .....++++||++|+ +++++++|.+.+
T Consensus 145 ~~~~~~~-----------------------~~~--~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 145 LAEKFEV-----------------------PLS--EIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHHHTC-----------------------CGG--GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHhhh-----------------------hhh--ccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 2222110 000 113468999999999 999999998764
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=177.52 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=104.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEee---cccC--CCccccEEEEeCCCCCCchhhHHh
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLH---SEST--KGKIKPVHLVDVPGHSRLRPKLDE 135 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~DtpG~~~~~~~~~~ 135 (267)
....+||+++|.+|||||||+|+|++..+.....++......+.... ...+ ++..+.+.+|||||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 35668999999999999999999999876443333332211111000 1122 334578999999999999999999
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
+++.+|++|+|+|+++. +....|+..+.... .+.|+++|+||+|+........ +.+++...
T Consensus 118 ~l~~~d~ii~V~D~s~~----~~~~~~~~~l~~~~----~~~pvilV~NK~Dl~~~~~v~~--~~~~~~~~--------- 178 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD----SNKHYWLRHIEKYG----GKSPVIVVMNKIDENPSYNIEQ--KKINERFP--------- 178 (535)
T ss_dssp HHHSSEEEEEEECGGGG----GGHHHHHHHHHHHS----SSCCEEEEECCTTTCTTCCCCH--HHHHHHCG---------
T ss_pred HccCCcEEEEEEeCCCc----hhHHHHHHHHHHhC----CCCCEEEEEECCCcccccccCH--HHHHHHHH---------
Confidence 99999999999999864 44566666665532 4689999999999976543211 11111000
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++|+++|.+.+
T Consensus 179 -----------------------~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 179 -----------------------AIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp -----------------------GGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred -----------------------hcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 112368999999999 999999998765
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=166.31 Aligned_cols=154 Identities=21% Similarity=0.207 Sum_probs=103.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh------hHHhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP------KLDEF 136 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~------~~~~~ 136 (267)
+.++|+++|++|||||||+|+|++..+ .....+..+...........+ ..+.+|||||+.++.. ....+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~---~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 76 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ---HVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNF 76 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE---EEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc---ccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHh
Confidence 356999999999999999999998764 222232223333322222233 4699999999988766 45566
Q ss_pred h--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 137 L--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 137 ~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
+ ..+|++++|+|+++. .....++.++... ...|+++|+||+|+..........+.+.+
T Consensus 77 ~~~~~~d~vi~v~D~~~~----~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~----------- 136 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCL----MRNLFLTLELFEM-----EVKNIILVLNKFDLLKKKGAKIDIKKMRK----------- 136 (271)
T ss_dssp HHTTCCSEEEEEEEGGGH----HHHHHHHHHHHHT-----TCCSEEEEEECHHHHHHHTCCCCHHHHHH-----------
T ss_pred hhccCCcEEEEEecCCcc----hhhHHHHHHHHhc-----CCCCEEEEEEChhcCcccccHHHHHHHHH-----------
Confidence 6 689999999999874 3444455555542 23899999999997532111000111111
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 137 ------------------------~lg~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 137 ------------------------ELGVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ------------------------HHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ------------------------HcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-22 Score=174.27 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=102.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC----------Cchhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS----------RLRPK 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~----------~~~~~ 132 (267)
..++|+++|.+|+|||||+|+|++.... .+....+++.+........++ ..+++|||||+. .|...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~--~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV--IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE--EEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce--eecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHH
Confidence 4579999999999999999999987642 122233333332222222233 469999999983 33333
Q ss_pred HH-hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHH
Q 024474 133 LD-EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLR 209 (267)
Q Consensus 133 ~~-~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~ 209 (267)
.. .+++.+|++++|+|++++ .+.+.. .|+..+.. .++|+++|+||+|+...... ++..+.+.+.+..
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~-~s~~~~-~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~-- 319 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEG-IIEQDK-RIAGYAHE------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF-- 319 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTC-CCHHHH-HHHHHHHH------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHhCCEEEEEEcCCcC-CcHHHH-HHHHHHHH------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhccc--
Confidence 22 478899999999999986 444443 45554443 67899999999999865432 2233322221110
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
....+++++||++|+ ++++++++.+.
T Consensus 320 -----------------------------~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 320 -----------------------------LDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp -----------------------------GTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred -----------------------------CCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 123478999999999 99998887754
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=166.98 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=101.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cccce--------------------eee----eccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT--------------------VTS----MEPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~~--------------------~~~----~~~~~~~~~~~~~~~~~~~ 115 (267)
....+|+++|++|+|||||+++|+... +.... ... ....+.+.......+....
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456799999999999999999996532 10000 000 0001122222222223334
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCC--ch---HHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP--NC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~---~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
..+.+|||||+++|......+++.+|++|+|+|++++.. .+ ....+.+..+.. .++| +++|+||+|+.
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~------~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT------AGVKHLIVLINKMDDP 168 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH------cCCCeEEEEeecCCCc
Confidence 689999999999999999999999999999999988521 11 123333333222 4566 99999999996
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhH
Q 024474 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQV 257 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l 257 (267)
.....+...+.+.+.+..+-.... +.. ..++.++++||++|+ ++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g---------------------~~~-~~~~~~i~iSA~~G~ni~~l 215 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVG---------------------FNP-KKDIHFMPCSGLTGANLKEQ 215 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhc---------------------ccc-cCCeeEEEeeccCCcccccc
Confidence 543222222333333322210000 000 125689999999999 8873
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=173.69 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=103.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCC----------CCCchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG----------HSRLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG----------~~~~~~ 131 (267)
...++|+++|.+|+|||||+|+|++.... .+....+++.+........++ ..+++||||| ++.+..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~--~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~ 268 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERV--IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSV 268 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE--EECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcc--ccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHH
Confidence 35689999999999999999999976421 222222222222111222233 4799999999 455555
Q ss_pred hHH-hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHH
Q 024474 132 KLD-EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ~~~-~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~ 208 (267)
... .+++.+|++|+|+|++++ +.....++...+.. .++|+++|+||+|+..... .++..+.+++.+..
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~---~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~- 339 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEG---IIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF- 339 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC---CCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGG-
T ss_pred HHHHHHHhhCCEEEEEEeCCCC---cCHHHHHHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhccc-
Confidence 444 478899999999999885 23333333333332 6789999999999986543 23333333321110
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+++++||++|+ +++++++|.+.+
T Consensus 340 ------------------------------~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 340 ------------------------------LDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp ------------------------------GTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred ------------------------------CCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 123579999999999 999999987653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-21 Score=172.40 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=95.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC---------chhhHHh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR---------LRPKLDE 135 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~---------~~~~~~~ 135 (267)
++|+++|.||||||||+|+|++.... .+...++.+.+.......+++ ..+++|||||+.. ++.....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~--~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA--IVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc--eecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHH
Confidence 58999999999999999999987631 122233333333333333334 4689999999875 2345667
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
+++.+|++++|+|++++. .....++.++++. .++|+++|+||+|+... ..... ...+
T Consensus 78 ~~~~ad~il~V~D~~~~~---~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~~~-----~~~~~---~~~~------- 134 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGI---TKEDESLADFLRK-----STVDTILVANKAENLRE-----FEREV---KPEL------- 134 (439)
T ss_dssp HHTTCSEEEEEEETTTCC---CHHHHHHHHHHHH-----HTCCEEEEEESCCSHHH-----HHHHT---HHHH-------
T ss_pred HHHhCCEEEEEEECCCCC---CHHHHHHHHHHHH-----cCCCEEEEEeCCCCccc-----cHHHH---HHHH-------
Confidence 899999999999998752 2233344444432 46899999999997421 00000 0111
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+. ...++++||++|. +++|+++|.+.+
T Consensus 135 --------------------~~lg-~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 135 --------------------YSLG-FGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp --------------------GGGS-SCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HhcC-CCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 0001 1146899999999 999999998765
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-21 Score=172.69 Aligned_cols=164 Identities=19% Similarity=0.262 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--cccc----ee-eeecc---cccee-----EeecccCCCccccEEEEeCCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQG----TV-TSMEP---NEDTF-----VLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~----~~-~~~~~---~~~~~-----~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
+.++|+++|++|+|||||+++|+... +... .. .+... .+.+. .......++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45699999999999999999997621 1110 00 00000 01111 11111114455789999999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
+|...+..+++.+|++|+|+|++++ ...+....|.. ... .++|+++|+||+|+.... .++..+.+.+.+.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~g-v~~qt~~~~~~-~~~------~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg- 152 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQG-VEAQTLANCYT-AME------MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVG- 152 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTC-CCTHHHHHHHH-HHH------TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHH-HHH------CCCCEEEeeeccCccccc-HHHHHHHHHHHhC-
Confidence 9999999999999999999999986 34444444433 222 578999999999998654 3333333322110
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|. +++|+++|.+++++
T Consensus 153 -------------------------------~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 153 -------------------------------IDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp -------------------------------CCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred -------------------------------CCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 001137899999999 99999999998764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=171.10 Aligned_cols=152 Identities=21% Similarity=0.276 Sum_probs=96.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC--------CchhhHHhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS--------RLRPKLDEF 136 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~--------~~~~~~~~~ 136 (267)
++|+++|.+|||||||+|+|++..+. .+....+.+.+........ .+..+.+|||||+. .+...+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~--~v~~~~g~T~d~~~~~~~~--~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSSAEW--LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 79 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEECTT--CSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCCccceEEEEEEE--CCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 68999999999999999999987542 2222333333333333333 33689999999986 455667788
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
++.+|++|+|+|++++ ......++.+.++. .++|+++|+||+|+.....
T Consensus 80 ~~~ad~il~vvD~~~~---~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~~----------------------- 128 (436)
T 2hjg_A 80 MDEADVIIFMVNGREG---VTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMRA----------------------- 128 (436)
T ss_dssp HHHCSEEEEEEETTTC---SCHHHHHHHHHHTT-----CCSCEEEEEECCCC----------------------------
T ss_pred HHhCCEEEEEEeCCCC---CCHHHHHHHHHHHH-----cCCCEEEEEECccCccchh-----------------------
Confidence 9999999999999886 22334556666653 6789999999999863210
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. .+ +..+. -..++++||++|+ +++|+++|.+.++
T Consensus 129 --~~----------~~--~~~lg-~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 129 --NI----------YD--FYSLG-FGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp --CC----------CS--SGGGS-SCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred --hH----------HH--HHHcC-CCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 00 00 11111 1157899999999 9999999988764
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=159.18 Aligned_cols=165 Identities=18% Similarity=0.236 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceee----eeccc-cceeEeecccCCCccccEEEEeCCCCCC-------c
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT----SMEPN-EDTFVLHSESTKGKIKPVHLVDVPGHSR-------L 129 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~l~DtpG~~~-------~ 129 (267)
...++|+++|.+|+|||||+|+|++........+ ...++ +.+........++..+.+++|||||+.+ +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 3467999999999999999999887654221110 00111 1122222223345456899999999843 2
Q ss_pred hhhH-------Hhhhcc-------------CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 130 RPKL-------DEFLPQ-------------AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 130 ~~~~-------~~~~~~-------------~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.... ..|+.. +|+++++++.+.. .+......+...+. .++|+++|+||+|+.
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~--~~~~~d~~~l~~l~------~~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH--GLKPLDIEFMKRLH------EKVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS--SCCHHHHHHHHHHT------TTSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC--CCCHHHHHHHHHHh------ccCCEEEEEeccCCC
Confidence 3333 444443 7899999987763 23334344444443 378999999999986
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.........+.+.+.+. ..++.++++||++|+ ++++.++|.+.++
T Consensus 158 ~~~e~~~~~~~i~~~l~--------------------------------~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQ--------------------------------EHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp CHHHHHHHHHHHHHHHH--------------------------------HTTCCCCCC-----------CHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHH--------------------------------HcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 54333333333333322 223457888999999 9999999988764
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=171.43 Aligned_cols=164 Identities=18% Similarity=0.295 Sum_probs=105.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--Ccccc-----eeeeecc---ccce-----eEeecccCCCccccEEEEeCCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQG-----TVTSMEP---NEDT-----FVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~-----~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
+.++|+++|++|+|||||+++|+.. .+... ...+... .+.+ ........++..+.+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4569999999999999999999752 11110 0000000 0001 111111114455789999999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
+|...+.++++.+|++|+|+|++++ .+.+....|.. ... .+.|+++|+||+|+.... .+...+.+.+.+
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~g-v~~qt~~~~~~-a~~------~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-- 153 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQG-IEAQTVANFWK-AVE------QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-- 153 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTB-CCHHHHHHHHH-HHH------TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS--
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCC-ccHHHHHHHHH-HHH------CCCCEEEEEeccCccccC-HHHHHHHHHHhh--
Confidence 9999999999999999999999986 34444444433 222 678999999999997654 333322222210
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
. .....++++||++|. +++|+++|.+++++
T Consensus 154 ------g------------------------~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 154 ------G------------------------LDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ------C------------------------CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ------C------------------------CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 0 001137999999999 99999999998864
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-21 Score=172.73 Aligned_cols=186 Identities=16% Similarity=0.233 Sum_probs=112.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeeccc-------------CCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-------------TKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+++|++|+|||||+++|++..+.......+..+.+........ .+.....+++|||||+.+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3568999999999999999999987644221111111111111111100 001112599999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--------------H
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------K 194 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~ 194 (267)
|..++.++++.+|++|+|+|++++. .......+..+.. .++|+++|+||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv--~~qT~e~l~~l~~------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGF--KPQTQEALNILRM------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCC--CHHHHHHHHHHHH------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCc--cHhHHHHHHHHHH------cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 9999889999999999999999851 1222222332222 6789999999999975321 1
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 195 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.+.+.+.+.+..+...... .....+... ........++++++||++|+ +++|++||...+
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e---~gl~~e~~~-------~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHE---EGFESERFD-------RVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---TTCEEEEGG-------GCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---cCcchHHHH-------HHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 33334443333332221111 000000000 01112456789999999999 999999998754
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-21 Score=166.85 Aligned_cols=171 Identities=19% Similarity=0.158 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---cceee--eeccccceeEe---------ecc-cCC--Cc----cccEE
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTVT--SMEPNEDTFVL---------HSE-STK--GK----IKPVH 119 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~~--~~~~~~~~~~~---------~~~-~~~--~~----~~~~~ 119 (267)
+...++|+++|++++|||||+++|++.... ..... |+......... ... ..+ +. ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 456789999999999999999999864321 11111 11100000000 000 001 11 25799
Q ss_pred EEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHH
Q 024474 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK 199 (267)
Q Consensus 120 l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 199 (267)
+|||||+++|.......+..+|++|+|+|++++ .......+.+..+... ...|+++|+||+|+.......+..+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~~qt~e~l~~~~~l-----~~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEP-CPQPQTKEHLMALEIL-----GIDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC-SSCHHHHHHHHHHHHT-----TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC-CCCchhHHHHHHHHHc-----CCCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999888888888889999999999975 2123333333322221 2358999999999986543222222
Q ss_pred HHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 200 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+.+.+... ...+++++++||++|+ +++|+++|.+.++
T Consensus 159 ~i~~~l~~~-----------------------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGT-----------------------------IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTS-----------------------------TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhc-----------------------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 232211100 0124579999999999 9999999998765
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-22 Score=180.51 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=110.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.+..+.....+++ +.++........ ....+++|||||+.+|..++..+++.+|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~gi---T~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~ 78 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGI---TQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDI 78 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCB---CCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCce---eEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCE
Confidence 56799999999999999999999866533222211 122211222221 23479999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+|++++ ........+..+.. .++|+++|+||+|+....... ..+.+. ..
T Consensus 79 vILVVDa~dg--~~~qt~e~l~~~~~------~~vPiIVViNKiDl~~~~~~~-v~~~l~----~~-------------- 131 (537)
T 3izy_P 79 VILVVAADDG--VMKQTVESIQHAKD------AHVPIVLAINKCDKAEADPEK-VKKELL----AY-------------- 131 (537)
T ss_dssp CEEECBSSSC--CCHHHHHHHHHHHT------TTCCEEECCBSGGGTTTSCCS-SSSHHH----HT--------------
T ss_pred EEEEEECCCC--ccHHHHHHHHHHHH------cCCcEEEEEecccccccchHH-HHHHHH----hh--------------
Confidence 9999999985 23344444444332 678999999999997543210 001110 00
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+........++++++||++|+ +++|+++|...+
T Consensus 132 ---------~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 132 ---------DVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp ---------TSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred ---------hhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 0001122346789999999999 999999998764
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=169.90 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc-------------ceeeeec----cccceeEeecccCCCccccEEEEeCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-------------GTVTSME----PNEDTFVLHSESTKGKIKPVHLVDVPG 125 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~-------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~DtpG 125 (267)
+.++|+|+|++|+|||||+++|+...... ....... ..+.+.......+....+.+++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 56799999999999999999996211000 0000000 000111111111222346899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
+.+|......+++.+|++|+|+|++++ ...... ..+..+.. .++|+++|+||+|+....
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g-~~~~t~-~~~~~~~~------~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKG-VEPRTI-KLMEVCRL------RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTC-SCHHHH-HHHHHHHT------TTCCEEEEEECTTSCCSC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHH-HHHHHHHH------cCCCEEEEEeCCCCcccc
Confidence 999999999999999999999999986 333332 33333322 678999999999996543
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-21 Score=171.06 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=105.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC----cccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS----THQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLP 138 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 138 (267)
+.++|+++|++++|||||+++|++.. ............+.+........ ....+++|||||+++|......++.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE--CCEEEEEEECCChHHHHHHHHHHHh
Confidence 45799999999999999999999865 11000000000011111111111 2368999999999999888889999
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
.+|++|+|+|++++ ......+.+..+.. .++|+++|+||+|+.+....+...+.+.+.+... .
T Consensus 96 ~aD~~ilVvda~~g--~~~qt~e~l~~~~~------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~----~----- 158 (482)
T 1wb1_A 96 IIDLALIVVDAKEG--PKTQTGEHMLILDH------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST----H----- 158 (482)
T ss_dssp SCCEEEEEEETTTC--SCHHHHHHHHHHHH------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS----S-----
T ss_pred hCCEEEEEEecCCC--ccHHHHHHHHHHHH------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh----c-----
Confidence 99999999999885 12333333332222 5688899999999975322233333333322210 0
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ..+++++++||++|+ +++|+++|.+.+
T Consensus 159 ------------------~-~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 159 ------------------N-LKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp ------------------S-GGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------c-cccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 0 114579999999999 999999998864
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-21 Score=170.17 Aligned_cols=156 Identities=20% Similarity=0.246 Sum_probs=102.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------HH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-------LD 134 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-------~~ 134 (267)
...++|+++|++|+|||||+|+|++..+.. .....+++...........+. ..+++|||||+.++... ..
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~--~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI--VSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 456799999999999999999999876421 111222222222222222222 27999999999877544 45
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.+++.+|++|+|+|+.. ......|+..+.. .+.|+++|+||+|+......+. . ..
T Consensus 109 ~~l~~aD~vllVvD~~~----~~~~~~~l~~l~~------~~~piIvV~NK~Dl~~~~~~~~-~-------~~------- 163 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAP----TPYEDDVVNLFKE------MEIPFVVVVNKIDVLGEKAEEL-K-------GL------- 163 (423)
T ss_dssp HHHTSCSEEEEECSSSC----CHHHHHHHHHHHH------TTCCEEEECCCCTTTTCCCTHH-H-------HH-------
T ss_pred HHHhcCCEEEEEEeCCC----hHHHHHHHHHHHh------cCCCEEEEEeCcCCCCccHHHH-H-------HH-------
Confidence 68899999999999932 2344555555544 5789999999999987655411 1 10
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.+ ..++.++++||++|+ +++++++|.+.++
T Consensus 164 --------------------l~~-~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 164 --------------------YES-RYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp --------------------SSC-CTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred --------------------HHH-HcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 000 123478999999999 9999999998873
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-21 Score=167.14 Aligned_cols=171 Identities=19% Similarity=0.224 Sum_probs=105.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---cceee--eeccccceeEee---------ccc-CC--Cc----cccEE
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTVT--SMEPNEDTFVLH---------SES-TK--GK----IKPVH 119 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~~--~~~~~~~~~~~~---------~~~-~~--~~----~~~~~ 119 (267)
+...++|+++|++++|||||+++|++.... ..... |+.......... ... .. +. ...++
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 355679999999999999999999854321 11111 110000000000 000 01 11 25799
Q ss_pred EEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHH
Q 024474 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK 199 (267)
Q Consensus 120 l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 199 (267)
+|||||+.+|.......+..+|++|+|+|++++ .......+.+..+... ...|+++|+||+|+.......+..+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~~qt~e~l~~~~~~-----~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEP-CPRPQTREHLMALQII-----GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC-SSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCC-CCChhHHHHHHHHHHc-----CCCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999888888888899999999999975 1123333333322211 2357999999999975432112222
Q ss_pred HHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 200 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+.+.+.. ....+++++++||++|+ +++|+++|.+.++
T Consensus 161 ~i~~~l~~-----------------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 161 QIKEFIEG-----------------------------TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHTT-----------------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHh-----------------------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22211110 00224579999999999 9999999998765
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-21 Score=156.73 Aligned_cols=167 Identities=11% Similarity=0.132 Sum_probs=98.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccc--cceeEeecccCCCccccEEEEeCCCCCCchh--------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN--EDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------- 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------- 131 (267)
.+.++|+++|++|+|||||+|+|++..... ....++ +..........+ +..+.+|||||+.++..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~---~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~ 94 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFE---SKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKE 94 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSC---CCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcc---cCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHH
Confidence 456899999999999999999999876311 111121 122221122222 35799999999876532
Q ss_pred ---hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe-cCCCCCCCCHHH-HH----HHHH
Q 024474 132 ---KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN-KTDKVTAHTKEF-IR----KQME 202 (267)
Q Consensus 132 ---~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n-K~Dl~~~~~~~~-~~----~~l~ 202 (267)
....+++.+|++|+|+|+++..........++.+.... ....|+++|+| |+|+... .... +. +.+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~----~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~ 169 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE----DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALS 169 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG----GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc----hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHH
Confidence 22336789999999999986422223344555554431 12456777776 9999743 2222 11 1122
Q ss_pred HHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 203 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.+..+ .. .......+++||++|. +++++++|.+.+
T Consensus 170 ~~~~~~----~~-----------------------~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 170 KLVAAC----GG-----------------------RICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp HHHHHT----TT-----------------------CEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh----CC-----------------------eEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 122211 00 0000111788999999 999999998765
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=157.13 Aligned_cols=157 Identities=20% Similarity=0.301 Sum_probs=101.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeecc-ccceeEeecccCCCccccEEEEeCCCCC-Cch--------hh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP-NEDTFVLHSESTKGKIKPVHLVDVPGHS-RLR--------PK 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~DtpG~~-~~~--------~~ 132 (267)
+..+|+++|++|+|||||+|+|++..+. ..+..+ ++....... +......+.+|||||+. ... ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~---i~s~~~~tTr~~~~gi--~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS---ITSRKAQTTRHRIVGI--HTEGAYQAIYVDTPGLHMEEKRAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE---ECCCCSSCCSSCEEEE--EEETTEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc---ccCCCCCcceeeEEEE--EEECCeeEEEEECcCCCccchhhHHHHHHHH
Confidence 3458999999999999999999997642 111112 121111111 12233689999999987 322 22
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
...+++.+|++++|+|+++. .....++.+.+.. .+.|+++|+||+|+... .....+ .+..+...
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~~----~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~--~~~~~~----~l~~l~~~- 145 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTRW----TPDDEMVLNKLRE-----GKAPVILAVNKVDNVQE--KADLLP----HLQFLASQ- 145 (301)
T ss_dssp TTSCCCCEEEEEEEEETTCC----CHHHHHHHHHHHS-----SSSCEEEEEESTTTCCC--HHHHHH----HHHHHHTT-
T ss_pred HHHHHhcCCEEEEEEeCCCC----CHHHHHHHHHHHh-----cCCCEEEEEECcccCcc--HHHHHH----HHHHHHHh-
Confidence 34567889999999999762 2333455555542 57899999999998752 222222 22222100
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+...++++||++|+ +++|+++|.+.++
T Consensus 146 --------------------------~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 146 --------------------------MNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp --------------------------SCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred --------------------------cCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 111258999999999 9999999998764
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-21 Score=166.63 Aligned_cols=171 Identities=19% Similarity=0.188 Sum_probs=108.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--------Ccccceeee-e---ccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG--------STHQGTVTS-M---EPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~--------~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
....++|+++|++|+|||||+++|++. .+....... . ...+.+.......+......+.+|||||+.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456789999999999999999999873 110000000 0 0001111111112233346899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCC-HHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT-KEFIRKQMEKEID 206 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~l~~~~~ 206 (267)
|......+++.+|++|+|+|++++ ......+++..+.. .++| +++|+||+|+..... .+.+.+.+.+.+.
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g--~~~qt~~~l~~~~~------~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADG--PMPQTREHILLARQ------VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN 159 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTC--CCHHHHHHHHHHHH------TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCC--CcHHHHHHHHHHHH------cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence 998899999999999999999886 23445555544433 5678 899999999974211 1222223333222
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-------------------chhHHHHHHhhcC
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-------------------ISQVEQFIREQVK 266 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-------------------i~~l~~~l~~~~~ 266 (267)
.+. +. ..+++++++||++|+ +++|+++|.++++
T Consensus 160 ~~~-------------------------~~--~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 160 QYE-------------------------FP--GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HTT-------------------------SC--TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred Hhc-------------------------cc--ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 210 00 123578999999985 6788889888775
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=166.77 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=100.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC--cccceee------------------------eeccccceeEeecccCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTVT------------------------SMEPNEDTFVLHSESTKGK 114 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 114 (267)
....++|+++|.+|+|||||+++|++.. +...... .....+.+.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4567899999999999999999997641 1100000 0000011111111112334
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCC--c--hHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP--N--CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~--~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.+.+.||||||+++|......+++.+|++|+|+|++++.. . ......+...+.... ...|+++|+||+|+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~----~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GIHNLIIAMNKMDNVD 185 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT----TCCCEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc----CCCcEEEEEECcCccc
Confidence 4689999999999999999999999999999999988511 0 112222232333221 2346999999999976
Q ss_pred CC--CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chh
Q 024474 191 AH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ 256 (267)
Q Consensus 191 ~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~ 256 (267)
.. ..+++.+.+...+..+. + ...++.|+++||++|+ +++
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g-------------------------~--~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIG-------------------------F--FEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHT-------------------------C--CGGGEEEEECCSSSCTTSSS
T ss_pred chHHHHHHHHHHHHHHHHHcC-------------------------C--CcccceEEEEeeecCCCccc
Confidence 32 12333333333333221 0 0235689999999999 774
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-20 Score=167.85 Aligned_cols=162 Identities=19% Similarity=0.246 Sum_probs=105.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++.++|+++|++++|||||+++|.+..+.......+...... ..+...+..+++|||||+.+|..++..++..+|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~-----~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD 76 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA-----YHVETENGMITFLDTPGHAAFTSMRARGAQATD 76 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSC-----CCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEE-----EEEEECCEEEEEEECCCcHHHHHHHHHHHhhCC
Confidence 467899999999999999999998765432222111111111 112222357899999999999999888999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+|++++. .....+.+..... .+.|+++++||+|+...... ...
T Consensus 77 ~aILVVda~~g~--~~qT~e~l~~~~~------~~vPiIVviNKiDl~~~~~~------------------------~v~ 124 (501)
T 1zo1_I 77 IVVLVVAADDGV--MPQTIEAIQHAKA------AQVPVVVAVNKIDKPEADPD------------------------RVK 124 (501)
T ss_dssp SEEEEEETTTBS--CTTTHHHHHHHHH------TTCCEEEEEECSSSSTTCCC------------------------CTT
T ss_pred EEEEEeecccCc--cHHHHHHHHHHHh------cCceEEEEEEeccccccCHH------------------------HHH
Confidence 999999998741 2222233333222 67899999999999753210 000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+. ...+..+.....++++++||++|+ +++|+++|...
T Consensus 125 ~~l~----~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 125 NELS----QYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCCC----CCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHHH----HhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 0000 000001112345789999999999 99999998753
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-20 Score=163.96 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=107.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccc------e--ee---eeccccceeEeecccCCCccccEEEEeCCCCCCchh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQG------T--VT---SMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~------~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
+.++|+++|++|+|||||+++|++...... . .. .....+.+.......+......+.+|||||+.+|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 456999999999999999999987411000 0 00 000011112211122233446899999999999988
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCC-HHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT-KEFIRKQMEKEIDKLR 209 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~ 209 (267)
....+++.+|++|+|+|++++ . .....+.+..+.. .++| +++|+||+|+..... .+.+.+.+.+.+..+.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g-~-~~qt~e~l~~~~~------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 153 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDG-P-MPQTREHLLLARQ------IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG 153 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTC-S-CHHHHHHHHHHHH------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHhhCCEEEEEEECCCC-C-CHHHHHHHHHHHH------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence 888999999999999999986 2 3344444433322 5678 789999999975211 1222223333222210
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-----------chhHHHHHHhhcCC
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVKP 267 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~p 267 (267)
+. ...++++++||++|. +++|+++|.+++++
T Consensus 154 -------------------------~~--~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 154 -------------------------YK--GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp -------------------------SC--TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred -------------------------CC--cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 00 124579999999964 78999999987753
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=159.90 Aligned_cols=161 Identities=18% Similarity=0.172 Sum_probs=103.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC----CchhhHHhh---h
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS----RLRPKLDEF---L 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~----~~~~~~~~~---~ 137 (267)
.+|+++|.+|||||||+|+|++... .+..+..++.........+++ ...+.+|||||+. .+..+...+ +
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~---~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP---KIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC---EESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC---ccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHH
Confidence 5799999999999999999988653 111121111111111222222 2479999999953 233343444 4
Q ss_pred ccCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 138 PQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
..+|++|+|+|+++. ..+++....|+.++..... ...++|+++|+||+|+.... + .+++....+
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~-~l~~~p~ilV~NK~Dl~~~~---e---~~~~l~~~l------- 300 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL-RLTERPQIIVANKMDMPEAA---E---NLEAFKEKL------- 300 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS-STTTSCBCBEEECTTSTTHH---H---HHHHHHHHC-------
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh-hhcCCCEEEEEECccCCCCH---H---HHHHHHHHh-------
Confidence 569999999999872 2567777777777765421 12578999999999996421 1 111111110
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ +++|+++|.+.+.
T Consensus 301 -----------------------~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 301 -----------------------TDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp -----------------------CSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred -----------------------hcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 111468999999999 9999999988763
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-20 Score=161.00 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=100.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
+|+++|++|+|||||+++|+.. -.++.. .... +......+++|||||+.+|.......++.+|++|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~~-----~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ail 89 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTSSDI-----TMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVL 89 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEESSS-----EEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEEEEe-----eEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEE
Confidence 9999999999999999999821 111211 1111 12233579999999999998888889999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcE-EEEEe-cCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCN-KTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pv-ivv~n-K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|+| +.+ ......+++..+.. .+.|. ++|+| |+|+ .....++..+.+++.+...
T Consensus 90 Vvd-~~g--~~~qt~e~~~~~~~------~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--------------- 144 (370)
T 2elf_A 90 CIP-PQG--LDAHTGECIIALDL------LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--------------- 144 (370)
T ss_dssp EEC-TTC--CCHHHHHHHHHHHH------TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS---------------
T ss_pred EEc-CCC--CcHHHHHHHHHHHH------cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc---------------
Confidence 999 654 34455555544433 46777 99999 9999 4321222222222211100
Q ss_pred ccCCCCCCCcccccccceeEEEE--eeecc---Cc-chhHHHHHHhhcC
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAE--ASGLT---GE-ISQVEQFIREQVK 266 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~---g~-i~~l~~~l~~~~~ 266 (267)
-...+++++ +||++ |+ +++|+++|.+.++
T Consensus 145 --------------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 145 --------------VLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp --------------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred --------------CCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 012457999 99999 99 9999999987653
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=153.69 Aligned_cols=165 Identities=20% Similarity=0.176 Sum_probs=95.2
Q ss_pred CCCE-EEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC---------chhh
Q 024474 63 KSTT-IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR---------LRPK 132 (267)
Q Consensus 63 ~~~~-i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~---------~~~~ 132 (267)
...+ |+++|++|+|||||+|+|++..+. +.....++.+.......+++ ..+.+|||||+.. ++..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~---~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQK---VDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC--------------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCcc---ccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH
Confidence 3455 999999999999999999987642 11111112112122222334 4689999999732 2222
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
+ ..+..+|++++|+|++++..........+.+++.... ..+.|+++|+||+|+.... .....+.+......+.
T Consensus 252 l-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~--- 324 (364)
T 2qtf_A 252 L-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG--VSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY--- 324 (364)
T ss_dssp H-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--CCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC---
T ss_pred H-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--cCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc---
Confidence 2 3578899999999998751112222222233333211 1568999999999997543 2221111211111100
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++|+++|.+.+
T Consensus 325 --------------------------~~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 325 --------------------------SPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp --------------------------SCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------------CCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 113457999999999 999999998764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-20 Score=161.52 Aligned_cols=168 Identities=21% Similarity=0.255 Sum_probs=103.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccceeee------------------ec------cccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTS------------------ME------PNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~------------------~~------~~~~~~~~~~~~~~~~~ 115 (267)
.+.++|+++|++|+|||||+++|+.. .+....... .+ ..+.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45679999999999999999999864 222111000 00 00111111112223445
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHH-------HHHHHHHHhcCCCCCCCC-cEEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAA-------SEYLYDILTNSTVVKKKI-PVLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~-pvivv~nK~D 187 (267)
..+++|||||+.+|......+++.+|++|+|+|++++ +++.. .+.+..... .+. |+++|+||+|
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~g--sfe~~~~~~~qt~~~~~~~~~------~~~~~iivviNK~D 155 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG--EYEAGMSVEGQTREHIILAKT------MGLDQLIVAVNKMD 155 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT--HHHHHHSTTCHHHHHHHHHHH------TTCTTCEEEEECGG
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCC--ccccccccchHHHHHHHHHHH------cCCCeEEEEEEccc
Confidence 6899999999999999999999999999999999984 44432 222221111 343 6899999999
Q ss_pred CCCCCC-H---HHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-ch-------
Q 024474 188 KVTAHT-K---EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS------- 255 (267)
Q Consensus 188 l~~~~~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~------- 255 (267)
+..... . +.+.+.+.+.+..+. +. ..++.++++||++|+ +.
T Consensus 156 l~~~~~~~~~~~~~~~~i~~~~~~~~-------------------------~~--~~~~~~i~iSA~~g~~v~e~~~~~~ 208 (435)
T 1jny_A 156 LTEPPYDEKRYKEIVDQVSKFMRSYG-------------------------FN--TNKVRFVPVVAPSGDNITHKSENMK 208 (435)
T ss_dssp GSSSTTCHHHHHHHHHHHHHHHHHTT-------------------------CC--CTTCEEEECBTTTTBTTTBCCSSCT
T ss_pred CCCccccHHHHHHHHHHHHHHHHHcC-------------------------CC--cCCceEEEeecccCccccccccccc
Confidence 986421 1 222333333322210 00 124679999999999 75
Q ss_pred -----hHHHHHHhh
Q 024474 256 -----QVEQFIREQ 264 (267)
Q Consensus 256 -----~l~~~l~~~ 264 (267)
.|+++|...
T Consensus 209 ~~~g~~Ll~~l~~~ 222 (435)
T 1jny_A 209 WYNGPTLEEYLDQL 222 (435)
T ss_dssp TCCSCCHHHHHTTC
T ss_pred cccchhHHHHHhcc
Confidence 577777654
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-20 Score=161.62 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cccee------eeecccc--------------------ceeEeecccCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTV------TSMEPNE--------------------DTFVLHSESTKG 113 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~~~~------~~~~~~~--------------------~~~~~~~~~~~~ 113 (267)
.+.++|+++|++|+|||||+++|++... ..... ....+++ .+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4457999999999999999999986431 00000 0000100 000000111122
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCC-cEEEEEecCCCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-PVLICCNKTDKVTA 191 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-pvivv~nK~Dl~~~ 191 (267)
....+++|||||+++|......++..+|++|+|+|++++. .....+++..+.. .+. |+++|+||+|+...
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~--~~qt~~~l~~~~~------~~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV--QTQTRRHSYIASL------LGIKHIVVAINKMDLNGF 172 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCEEEEEEECTTTTTS
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCeEEEEEEcCcCCcc
Confidence 3467999999999999988889999999999999999862 3344444443322 334 69999999999753
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-20 Score=161.58 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=97.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh----------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK---------- 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---------- 132 (267)
..++++++|++|||||||+|+|++.... .+...++++.+.......+++ ..+.+|||||+......
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~--~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERA--LVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTE--EECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCC
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccc--ccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHH
Confidence 3479999999999999999999987531 122222222222222222344 36899999998543221
Q ss_pred --HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHH
Q 024474 133 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKL 208 (267)
Q Consensus 133 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~ 208 (267)
...+++.+|++++|+|++++ .+... .++...+.. .++|+++|+||+|+..... .++..+.+.+.+.
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~-~~~~~--~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-- 324 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQG-ITRQD--QRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY-- 324 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC-CCHHH--HHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG--
T ss_pred HHHHHHHhhCCEEEEEEeCCCC-CCHHH--HHHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc--
Confidence 13467889999999999875 23322 233343332 6789999999999975432 2323222221110
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
. ....+++++||++|. +++|++.+.+.
T Consensus 325 ----------------------------~-~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 325 ----------------------------F-IDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp ----------------------------G-GTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ----------------------------c-CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 0 123468999999999 99999988764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-20 Score=163.22 Aligned_cols=154 Identities=20% Similarity=0.267 Sum_probs=99.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCC--------CCCchhhH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG--------HSRLRPKL 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG--------~~~~~~~~ 133 (267)
...++|+++|.+|||||||+|+|++..+. .+....+.+.+.... ........+++||||| +..++...
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~--~v~~~~g~t~~~~~~--~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEE--ECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCcceeEEEE--EEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence 34679999999999999999999987542 122222222222222 2233446899999999 44556667
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..+++.+|++|+|+|..++ +.....++.+.++. .++|+++|+||+|+......
T Consensus 97 ~~~~~~ad~il~VvD~~~~---~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~~~------------------- 149 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREG---VTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMRAN------------------- 149 (456)
T ss_dssp HHHHHHCSEEEEEEESSSC---SCHHHHHHHHHHTT-----CCSCEEEEEECC---------------------------
T ss_pred HhhHhhCCEEEEEEeCCCC---CChHHHHHHHHHHH-----cCCCEEEEEECccchhhhhh-------------------
Confidence 7889999999999998775 44556667777653 68899999999997532100
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+ +..+. ...++++||++|. +.+|++++.+.+
T Consensus 150 ------~~e------------~~~lg-~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 150 ------IYD------------FYSLG-FGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -------CC------------SGGGS-SSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred ------HHH------------HHHcC-CCceEEeecccccchHHHHHHHHhhc
Confidence 000 00001 1135789999999 999999998765
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-20 Score=163.13 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccce--------------------eeee----ccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VTSM----EPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~--------------------~~~~----~~~~~~~~~~~~~~~~~~ 115 (267)
.+.++|+++|++|+|||||+++|++. .+.... +... ...+.+.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 34579999999999999999999864 111100 0000 000111111111123344
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchH-------HHHHHHHHHHhcCCCCCCCCc-EEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS-------AASEYLYDILTNSTVVKKKIP-VLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~p-vivv~nK~D 187 (267)
..+.+|||||+.+|......+++.+|++|+|+|++++ .+. .....+..... .++| +++|+||+|
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g--~~~~sf~~~~qt~~~~~~~~~------~~v~~iivviNK~D 156 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG--EFEAGISKDGQTREHALLAFT------LGVRQLIVAVNKMD 156 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH--HHHHHTCTTSHHHHHHHHHHH------TTCCEEEEEEECGG
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC--ccccccCcchhHHHHHHHHHH------cCCCeEEEEEEccc
Confidence 6899999999999999999999999999999999874 121 23333332222 4565 999999999
Q ss_pred CCC
Q 024474 188 KVT 190 (267)
Q Consensus 188 l~~ 190 (267)
+..
T Consensus 157 l~~ 159 (458)
T 1f60_A 157 SVK 159 (458)
T ss_dssp GGT
T ss_pred ccc
Confidence 973
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=164.13 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=99.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccee---------eeec-----------------cccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV---------TSME-----------------PNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~---------~~~~-----------------~~~~~~~~~~~~~~~~~ 115 (267)
...++|+++|++|+|||||+++|++....-... .... ..+.+.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 567899999999999999999998753210000 0000 00111111122223344
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC--Cc---hHHHHHHHHHHHhcCCCCCCC-CcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PN---CSAASEYLYDILTNSTVVKKK-IPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~-~pvivv~nK~Dl~ 189 (267)
..++||||||+.+|......+++.+|++|+|+|++++. .. .......+. +... .+ .|+++|+||+|+.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~-~~~~-----lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASS-----LGIHNLIIAMNKMDNV 318 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHH-HHHT-----TTCCEEEEEEECTTTT
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHH-HHHH-----cCCCeEEEEEeccccc
Confidence 68999999999999999999999999999999998630 00 112222222 2221 33 4599999999997
Q ss_pred CCCC--HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhH
Q 024474 190 TAHT--KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQV 257 (267)
Q Consensus 190 ~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l 257 (267)
.... .+++.+.+...+..+.. ...++.++++||++|+ ++++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~---------------------------~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGF---------------------------FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC---------------------------CGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcc---------------------------cccCccEEeeecccCCCcccc
Confidence 6321 22333333333332210 0235689999999999 7643
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=147.44 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=74.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-----------c
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-----------L 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-----------~ 129 (267)
....++|+++|++|+|||||+|+|++..+.....+... .+..........++ ..+.+|||||..+ +
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKS-ITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCc-eeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 34678999999999999999999999776332222111 11222222222233 5799999999654 2
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 195 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 195 (267)
......+++++|++|+|+|++...........++...... ....|+++|+||+|+......+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~----~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE----RARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH----HHGGGEEEEEECGGGC------
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh----hccceEEEEEeCCccCCcccHH
Confidence 2333445667899999999986522222233333332221 1345899999999987655443
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-20 Score=170.53 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--ccce--------------------eee-e---ccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGT--------------------VTS-M---EPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~~~--------------------~~~-~---~~~~~~~~~~~~~~~~~~ 115 (267)
...++|+++|++|+|||||+++|++... .... ... . ...+.+.......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 3456899999999999999999964210 0000 000 0 000112222222223334
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC--Cc---hHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PN---CSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
..+.||||||+.+|......+++.+|++|+|+|++++. .. .......+..+.. .++| +|+|+||+|+.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~------lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA------LGISEIVVSVNKLDLM 328 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH------SSCCCEEEEEECGGGG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH------cCCCeEEEEEeccccc
Confidence 68999999999999888888899999999999998641 01 1122222222222 4565 99999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-ch-------------
Q 024474 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS------------- 255 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~------------- 255 (267)
... .+. .+.+.+.+..+.. ... + + ...+++++++||++|+ ++
T Consensus 329 ~~~-~~~-~~~i~~el~~~l~--~~~----------------g--~--~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g 384 (592)
T 3mca_A 329 SWS-EDR-FQEIKNIVSDFLI--KMV----------------G--F--KTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384 (592)
T ss_dssp TTC-HHH-HHHHHHHHHHHHT--TTS----------------C--C--CGGGEEEEEECSSSCSSSCSCCCCGGGGTCCS
T ss_pred ccc-HHH-HHHHHHHHHHHHH--Hhh----------------C--C--CccceEEEEEecccCcccccccccccccccch
Confidence 522 111 1222222222110 000 0 0 0235689999999999 87
Q ss_pred -hHHHHHHhhcCC
Q 024474 256 -QVEQFIREQVKP 267 (267)
Q Consensus 256 -~l~~~l~~~~~p 267 (267)
.|++.|.+.++|
T Consensus 385 ~~Lle~l~~~~pp 397 (592)
T 3mca_A 385 PTLLSALDQLVPP 397 (592)
T ss_dssp CCHHHHHHTSCCC
T ss_pred HHHHHHHHhhccc
Confidence 799999887654
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-19 Score=158.13 Aligned_cols=124 Identities=20% Similarity=0.162 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--CCcccc--------------------eeeee----ccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG--------------------TVTSM----EPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~--------------------~~~~~----~~~~~~~~~~~~~~~~~~ 115 (267)
.+.++|+++|++++|||||+++|+. +.+... ..... ...+.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4567999999999999999999974 221100 00000 000111111111122234
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC--Cch---HHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PNC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~---~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
..+++|||||+.+|......+++.+|++|+|+|++++. .++ ....+.+..... .++| +++|+||+|+.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~------~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART------QGINHLVVVINKMDEP 194 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH------TTCSSEEEEEECTTST
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH------cCCCEEEEEEECccCC
Confidence 68999999999999998889999999999999999851 011 122222222221 5677 99999999996
Q ss_pred CC
Q 024474 190 TA 191 (267)
Q Consensus 190 ~~ 191 (267)
..
T Consensus 195 ~~ 196 (467)
T 1r5b_A 195 SV 196 (467)
T ss_dssp TC
T ss_pred Cc
Confidence 53
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=160.19 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=49.5
Q ss_pred ccEEEEeCCCCCC---chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 116 KPVHLVDVPGHSR---LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 116 ~~~~l~DtpG~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..+.+|||||..+ .......+++.+|++|+|+|++++ .+...... +.+.+. ..+.|+++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~-~s~~e~~~-l~~~l~-----~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP-CTLGERRY-LENYIK-----GRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST-TCHHHHHH-HHHHTT-----TSCCCEEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc-cchhHHHH-HHHHHH-----hhCCCEEEEEECcccccc
Confidence 3699999999765 344566789999999999999875 33333332 333332 246789999999998654
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=156.90 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--ccc-----------ceeeeec----cccceeEeecccCCCccccEEEEeCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQ-----------GTVTSME----PNEDTFVLHSESTKGKIKPVHLVDVPG 125 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~-----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~DtpG 125 (267)
+.++|+++|++|+|||||+++|+... +.. ....... ..+.+.......+....+.+++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 56799999999999999999998632 100 0000000 000011111111223447899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
+.+|......+++.+|++|+|+|++++ .......+..... ..++|+++|+||+|+.... ..+..+.+++
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g---~~~~t~~~~~~~~-----~~~ipiivviNK~Dl~~~~-~~~~~~~i~~ 160 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKG---VEDRTRKLMEVTR-----LRDTPILTFMNKLDRDIRD-PMELLDEVEN 160 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTC---SCHHHHHHHHHHT-----TTTCCEEEEEECTTSCCSC-HHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCcc---chHHHHHHHHHHH-----HcCCCEEEEEcCcCCcccc-HHHHHHHHHH
Confidence 999999999999999999999999986 2222233333332 2678999999999997654 3333344433
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=170.72 Aligned_cols=171 Identities=17% Similarity=0.192 Sum_probs=108.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc------e-eee---e-ccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG------T-VTS---M-EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~------~-~~~---~-~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
..+.++|+++|++++|||||+++|++...... . ... . ...+.+.......++.....+++|||||+.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 34568999999999999999999986411000 0 000 0 00111111111122344568999999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCC-HHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT-KEFIRKQMEKEIDK 207 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~l~~~~~~ 207 (267)
......+++.+|++|+|+|++++. .....+++..+.. .++| +++|+||+|+..... .+.+.+.+.+.+..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv--~~QTrEhL~ll~~------lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~ 444 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGP--MPQTREHILLGRQ------VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ 444 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCS--CTTHHHHHHHHHH------HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCccC--cHHHHHHHHHHHH------cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence 888889999999999999999852 3334444443332 4677 799999999975211 11222333332222
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC--------c-chhHHHHHHhhcC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG--------E-ISQVEQFIREQVK 266 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g--------~-i~~l~~~l~~~~~ 266 (267)
.. +. ..+++++++||++| + +++|+++|.++++
T Consensus 445 ~G-------------------------~~--~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 445 YD-------------------------FP--GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TT-------------------------SC--TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cc-------------------------cc--ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 10 00 12457999999999 5 8899999998775
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=146.72 Aligned_cols=164 Identities=15% Similarity=0.175 Sum_probs=98.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeecccc---------------------ceeEe-e-cc-----cC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNE---------------------DTFVL-H-SE-----ST 111 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~---------------------~~~~~-~-~~-----~~ 111 (267)
...++|+++|.+|+|||||+|+|++..+.... ..+..|+. .++.. . .. .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998763111 11111110 00000 0 00 00
Q ss_pred -----------------CCccccEEEEeCCCCCC-------------chhhHHhhhccCCEEE-EEEeCCCCCCchHHHH
Q 024474 112 -----------------KGKIKPVHLVDVPGHSR-------------LRPKLDEFLPQAAGIV-FVVDALEFLPNCSAAS 160 (267)
Q Consensus 112 -----------------~~~~~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~ 160 (267)
......+.+|||||+.. +......|++.++.++ +|+|+++. -......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC-GGGCHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc-hhhhHHH
Confidence 01125899999999742 3455667888888766 79999874 2222222
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccc-c
Q 024474 161 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQC-H 239 (267)
Q Consensus 161 ~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (267)
.++..+ . ..+.|+++|+||+|+...... ..+.++. . +..+ .
T Consensus 183 ~~~~~~-~-----~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~-------------------~-----------~~~~~~ 224 (299)
T 2aka_B 183 KIAKEV-D-----PQGQRTIGVITKLDLMDEGTD--ARDVLEN-------------------K-----------LLPLRR 224 (299)
T ss_dssp HHHHHH-C-----TTCSSEEEEEECGGGSCTTCC--CHHHHTT-------------------C-----------SSCCTT
T ss_pred HHHHHh-C-----CCCCeEEEEEEccccCCCCch--HHHHHhC-------------------C-----------cCcCCC
Confidence 333332 2 257899999999999754331 0011100 0 0000 1
Q ss_pred ceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 240 NKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 240 ~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+...++++||++|+ +++++++|.+.
T Consensus 225 ~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 225 GYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CcEEEECCChhhccccccHHHHHHHH
Confidence 23468899999999 99999998653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-19 Score=151.46 Aligned_cols=165 Identities=14% Similarity=0.273 Sum_probs=83.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc-cceeee----eccccceeEeec--ccCCCccccEEEEeCCCC-------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTS----MEPNEDTFVLHS--ESTKGKIKPVHLVDVPGH------- 126 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~-~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~l~DtpG~------- 126 (267)
....++|+++|++|+|||||+|+|.+.... ...... ..++ ....... ...++....+++|||||+
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~t-i~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERT-VQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------C-EEEEEEEEC----CEEEEEEEEC-----------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCc-eeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence 456689999999999999999998765422 111110 0111 1111111 122344467999999999
Q ss_pred CCchhhHH-------hhhccC-------------CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 127 SRLRPKLD-------EFLPQA-------------AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 127 ~~~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
+.+..+.. .|++.+ |+++|+++.+. .++......+...+. .++|+|+|+||+
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~--~~l~~~d~~~~~~l~------~~~piIlV~NK~ 184 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG--HGLKPLDVAFMKAIH------NKVNIVPVIAKA 184 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS--SSCCHHHHHHHHHTC------S-SCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC--CCcchhHHHHHHHhc------cCCCEEEEEECC
Confidence 55555554 555443 45777776533 235555433333322 678999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc----chhHHHHHH
Q 024474 187 DKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE----ISQVEQFIR 262 (267)
Q Consensus 187 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----i~~l~~~l~ 262 (267)
|+..........+.+.+.+. ..++.++++||++|+ +..+.+.|.
T Consensus 185 Dl~~~~ev~~~k~~i~~~~~--------------------------------~~~i~~~~~Sa~~~~~~e~~~~l~~~i~ 232 (361)
T 2qag_A 185 DTLTLKERERLKKRILDEIE--------------------------------EHNIKIYHLPDAESDEDEDFKEQTRLLK 232 (361)
T ss_dssp SSSCHHHHHHHHHHHHHHTT--------------------------------CC-CCSCCCC---------CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH--------------------------------HCCCCEEeCCCcCCCcchhHHHHHHHHH
Confidence 99754322211112211111 224578899999875 566677776
Q ss_pred hhcC
Q 024474 263 EQVK 266 (267)
Q Consensus 263 ~~~~ 266 (267)
+.++
T Consensus 233 ~~ip 236 (361)
T 2qag_A 233 ASIP 236 (361)
T ss_dssp HTCS
T ss_pred hcCC
Confidence 6654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=136.53 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=93.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----------ch
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----------LR 130 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----------~~ 130 (267)
..++.+|+++|++|||||||+|+|++..+.....++. +.+........++ .+.+|||||+.. ++
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~---G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTP---GRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQ 96 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEET---TEEEEECCCCC------CCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCC---ccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHH
Confidence 4577899999999999999999999875321111111 1111111111112 588999999853 22
Q ss_pred hhHHhhh---ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 131 PKLDEFL---PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 131 ~~~~~~~---~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
.....++ +.++++++++|++... +.. ...+...+. ..+.|+++|+||+|+............+...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~--~~~~~~~~~-----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~- 167 (210)
T 1pui_A 97 RALGEYLEKRQSLQGLVVLMDIRHPL-KDL--DQQMIEWAV-----DSNIAVLVLLTKADKLASGARKAQLNMVREAVL- 167 (210)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCC-CHH--HHHHHHHHH-----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHhhhcccEEEEEEECCCCC-chh--HHHHHHHHH-----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHH-
Confidence 2233444 4689999999998752 222 112222222 157899999999998643211110111111111
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+....+.++++||++++ +++++++|.+.+
T Consensus 168 -----------------------------~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 168 -----------------------------AFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp -----------------------------GGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------------------hcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 00223568899999999 999999998764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=154.90 Aligned_cols=134 Identities=21% Similarity=0.192 Sum_probs=87.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc---ccee------eeecc----ccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTV------TSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+..+|+++|++|+|||||+++|++.... .+.+ ....+ .+.++......+....+.+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 46679999999999999999999843221 0000 00000 01111111111223346899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
|......+++.+|++++|+|++++. ......++..+.. .++|+++|+||+|+. ....+..+.+.+.+
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~--~~qt~~~~~~~~~------~~ip~ilv~NKiD~~--~~~~~~~~~l~~~l 153 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGV--QVGTERAWTVAER------LGLPRMVVVTKLDKG--GDYYALLEDLRSTL 153 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCEEEEEECGGGC--CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcCcEEEEEcCCccc--chhHHHHHHHHHH------ccCCEEEEecCCchh--hhHHHHHHHHHHHh
Confidence 9999999999999999999988752 2233344444433 578999999999997 44444444454433
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=147.13 Aligned_cols=124 Identities=14% Similarity=0.164 Sum_probs=91.5
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCC---------CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
.+.+++|||+|++.++..|..|+++++++|||+|+++. .+++.+...|+..+..+.. ..++|+++|+||
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~--~~~~piiLv~NK 269 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW--FTDTSIILFLNK 269 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG--GTTSEEEEEEEC
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc--ccCCcEEEEEEC
Confidence 46799999999999999999999999999999999983 1568889999999887542 267999999999
Q ss_pred CCCCCC-----------------CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEee
Q 024474 186 TDKVTA-----------------HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS 248 (267)
Q Consensus 186 ~Dl~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 248 (267)
+|+... ...++..+.+...+..+. ......++.++++|
T Consensus 270 ~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~-------------------------~~~~~~~~~~~etS 324 (353)
T 1cip_A 270 KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLN-------------------------KRKDTKEIYTHFTC 324 (353)
T ss_dssp HHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTC-------------------------SCTTTCCEEEEECC
T ss_pred cCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhh-------------------------cccCCCceEEEEEE
Confidence 998521 223333333322221110 00003467899999
Q ss_pred eccCc-chhHHHHHHhhc
Q 024474 249 GLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 249 a~~g~-i~~l~~~l~~~~ 265 (267)
|++|+ |+++++|+.+.+
T Consensus 325 A~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 325 ATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CcCchhHHHHHHHHHHHH
Confidence 99999 999999987653
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=148.08 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=112.3
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCc---ccceeeee
Q 024474 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGST---HQGTVTSM 97 (267)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~---~~~~~~~~ 97 (267)
+..+.+++++++...+..... +...+..+. ....+.++|+++|.+|+|||||+++|...-. ....+...
T Consensus 44 ~~~l~~~i~~~e~~~~~~~~~--~~~~~~~~~------~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 44 RAALPRAITLVESTRPDHREQ--AQQLLLRLL------PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp TTHHHHHHHHHHCCSHHHHHH--HHHHHHHHG------GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HHHHHHHHHHHhhcChhhHHH--HHHHHHHhH------hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 556788888887765543321 222222221 1235677999999999999999999864210 01011111
Q ss_pred ccccce---------------------eEeecc-----------------cCCCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 98 EPNEDT---------------------FVLHSE-----------------STKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 98 ~~~~~~---------------------~~~~~~-----------------~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
.+.... +..... .....++.+.||||||... .....+..
T Consensus 116 Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~ 192 (355)
T 3p32_A 116 DPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANM 192 (355)
T ss_dssp C----------------CHHHHTCTTEEEECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTT
T ss_pred CCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHh
Confidence 111100 000000 0011346899999999654 23344588
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
+|++++|+|+... +....+... ....|+++|+||+|+..........+.+.+.+..+...
T Consensus 193 aD~vl~V~d~~~~-~~~~~l~~~-----------~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~-------- 252 (355)
T 3p32_A 193 VDTFVLLTLARTG-DQLQGIKKG-----------VLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPR-------- 252 (355)
T ss_dssp CSEEEEEEESSTT-CTTTTCCTT-----------SGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTT--------
T ss_pred CCEEEEEECCCCC-ccHHHHHHh-----------HhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhcccc--------
Confidence 9999999998765 222211110 13468999999999865433333333444333322100
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
......+++++||++|+ +++|+++|.+++
T Consensus 253 -----------------~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 253 -----------------EALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp -----------------CCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred -----------------ccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 00112468999999999 999999998865
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-18 Score=146.61 Aligned_cols=204 Identities=16% Similarity=0.156 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH---HHhh-cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---cc
Q 024474 20 LEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLL---QVFR-RKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QG 92 (267)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~ 92 (267)
-+..+++.++.++...+... ..+...++.+..... +..+ +.....|+++|+||||||||+|+|++...+ ..
T Consensus 28 ~r~~l~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 28 QRACLAEAITLVESTHSRKK--ELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp CHHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHHHTTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHhccCcchh--HHHHHHHHHHHHhcccchhhcccccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 37788999999888766532 223333333322211 1111 234789999999999999999999862100 00
Q ss_pred eeeeeccccc---------------------eeEee-----------c------ccCCCccccEEEEeCCCCCCchhhHH
Q 024474 93 TVTSMEPNED---------------------TFVLH-----------S------ESTKGKIKPVHLVDVPGHSRLRPKLD 134 (267)
Q Consensus 93 ~~~~~~~~~~---------------------~~~~~-----------~------~~~~~~~~~~~l~DtpG~~~~~~~~~ 134 (267)
.+...+++.. .+... . ..+...++.+.++||||.... ..
T Consensus 106 ~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~ 182 (349)
T 2www_A 106 SVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQS---EF 182 (349)
T ss_dssp EEEECCC----------------CCSTTCTTEEEECC---------CTTHHHHHHHHHHTTCSEEEEECCCC--C---HH
T ss_pred EEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHHHHHHHHhhccCCCCEEEEECCCcchh---hh
Confidence 1111111100 00000 0 000123468999999996532 23
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.....+|++++|+|++.+ ...+.... .+ ...|.++|+||+|+............+...+..
T Consensus 183 ~l~~~~d~vl~V~d~~~~-~~~~~i~~---~i--------l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~------- 243 (349)
T 2www_A 183 AVADMVDMFVLLLPPAGG-DELQGIKR---GI--------IEMADLVAVTKSDGDLIVPARRIQAEYVSALKL------- 243 (349)
T ss_dssp HHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTT-------
T ss_pred hHHhhCCEEEEEEcCCcc-hhHHHhHH---HH--------HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHh-------
Confidence 456789999999999865 22211111 11 245789999999986321111111112111110
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
... .. .....+++++||++|+ +++|+++|.+++
T Consensus 244 ~~~-----------------~a-~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 244 LRK-----------------RS-QVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CC-----------------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCc-----------------cc-cCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 000 00 0112367889999999 999999998764
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=153.68 Aligned_cols=132 Identities=19% Similarity=0.212 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Cccc-c------eeeeec----cccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQ-G------TVTSME----PNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~-~------~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+++|++|+|||||+++|+.. .+.. . ...... ..+.+.......+....+.+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 34679999999999999999999842 1100 0 000000 000111111111122346899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~ 202 (267)
|...+..+++.+|++|+|+|++++ ...+.... +..+.. .+.|+++|+||+|+.... .....+.++
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g-~~~~t~~~-~~~~~~------~~~p~ivviNKiD~~~~~-~~~~~~~l~ 154 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQG-VEPQSETV-WRQAEK------YKVPRIAFANKMDKTGAD-LWLVIRTMQ 154 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHH-HHHHHH------TTCCEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred hHHHHHHHHHHCCEEEEEEECCCC-cchhhHHH-HHHHHH------cCCCEEEEEECCCcccCC-HHHHHHHHH
Confidence 999999999999999999999986 33443333 333332 578999999999997653 333333333
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=151.32 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccc-------eee-----------eeccccceeEeecccCCCccccEEEE
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQG-------TVT-----------SMEPNEDTFVLHSESTKGKIKPVHLV 121 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~ 121 (267)
.+.++|+|+|+.|+|||||+++|+.. .+... ... ++......+.+.....++..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45679999999999999999999742 11110 000 01000011111110112344789999
Q ss_pred eCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 024474 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201 (267)
Q Consensus 122 DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l 201 (267)
||||+.+|...+..+++.+|++|+|+|++++ ... .....+..... .+.|+++|+||+|+.... .....+.+
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~-qt~~~~~~~~~------~~ip~ilviNKiD~~~~~-~~~~~~~l 158 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-VQP-QSETVWRQANK------YKVPRIAFVNKMDRMGAN-FLKVVNQI 158 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCC-CcH-HHHHHHHHHHH------cCCCEEEEEeCCCccccc-HHHHHHHH
Confidence 9999999999999999999999999999986 222 22233333322 678999999999997653 34444444
Q ss_pred HHHH
Q 024474 202 EKEI 205 (267)
Q Consensus 202 ~~~~ 205 (267)
+..+
T Consensus 159 ~~~l 162 (704)
T 2rdo_7 159 KTRL 162 (704)
T ss_pred HHHh
Confidence 4443
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=134.76 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhc---
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLP--- 138 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~--- 138 (267)
.+.++|+++|.+|+|||||+|+|++..+.. .....+++......... ..+..+++|||||+.++....+.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~--~~~~~~~t~~~~~~~~~--~~~~~l~liDTpG~~~~~~~~~~~~~~i~ 109 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR--VSPFQAEGLRPVMVSRT--MGGFTINIIDTPGLVEAGYVNHQALELIK 109 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC--CCSSCC-CCCCEEEEEE--ETTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCCcceeeEEEEEE--ECCeeEEEEECCCCCCcccchHHHHHHHH
Confidence 467899999999999999999999876421 11122222222211122 22358999999999877655444332
Q ss_pred ------cCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC--CCHHHHHHH
Q 024474 139 ------QAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQ 200 (267)
Q Consensus 139 ------~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~ 200 (267)
.+|++++|+|++.. . +... ..++..+..... .....|+++|+||+|+... ...++..+.
T Consensus 110 ~~l~~~~~~~il~V~~~d~~-~-~~~~~~~~~~~l~~~~~-~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 110 GFLVNRTIDVLLYVDRLDVY-A-VDELDKQVVIAITQTFG-KEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp HHTTTCEECEEEEEEESSCS-C-CCHHHHHHHHHHHHHHC-GGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred HHHhcCCCCEEEEEEcCCCC-C-CCHHHHHHHHHHHHHhc-hhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 78999999988764 2 3322 234433332110 0123589999999999633 344444333
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=138.96 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=47.6
Q ss_pred ccEEEEeCCCCCC-------------chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 024474 116 KPVHLVDVPGHSR-------------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182 (267)
Q Consensus 116 ~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv 182 (267)
..+.+|||||+.+ +......+++.+|++++|+|+++..-.... ...+...+. ..+.|+++|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~-~~~i~~~~~-----~~~~~~i~v 204 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSD-ALQLAKEVD-----PEGKRTIGV 204 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCS-HHHHHHHHC-----SSCSSEEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhH-HHHHHHHhC-----CCCCcEEEE
Confidence 5799999999864 344566789999999999997432111111 112222222 267899999
Q ss_pred EecCCCCCCC
Q 024474 183 CNKTDKVTAH 192 (267)
Q Consensus 183 ~nK~Dl~~~~ 192 (267)
+||+|+....
T Consensus 205 ~NK~Dl~~~~ 214 (315)
T 1jwy_B 205 ITKLDLMDKG 214 (315)
T ss_dssp EECTTSSCSS
T ss_pred EcCcccCCcc
Confidence 9999997654
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-18 Score=142.54 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=88.0
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCC----------CCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
.+.+++|||+|++.++..|..|+++++++|||+|++ +. +++.+...|+..+..+.. ..++|+++++|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~-nr~~es~~~~~~i~~~~~--~~~~~iiL~~N 242 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNE-NRMEESKALFRTIITYPW--FQNSSVILFLN 242 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTS-BHHHHHHHHHHHHHTSGG--GTTCEEEEEEE
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccH-hHHHHHHHHHHHHhhhhc--cCCceEEEEEE
Confidence 468899999999999999999999999999999765 33 578888899998887543 26799999999
Q ss_pred cCCCCCC------------------CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEE
Q 024474 185 KTDKVTA------------------HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAE 246 (267)
Q Consensus 185 K~Dl~~~------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (267)
|+|+... .+.++..+.+.+.+..+. ..-..++.+++
T Consensus 243 K~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~--------------------------~~~~~~i~~~~ 296 (327)
T 3ohm_A 243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLN--------------------------PDSDKIIYSHF 296 (327)
T ss_dssp CHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSC--------------------------TTTTSCEEEEE
T ss_pred CchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhc--------------------------ccccCCcEEEE
Confidence 9998532 122333333222222110 00134567899
Q ss_pred eeeccCc-chhHHHHHHhh
Q 024474 247 ASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 247 ~Sa~~g~-i~~l~~~l~~~ 264 (267)
+||++++ |+.+++.+.+.
T Consensus 297 TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 297 TCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp CCTTCHHHHHHHHHHHHHH
T ss_pred EEeecCHHHHHHHHHHHHH
Confidence 9999999 98888777654
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-17 Score=145.88 Aligned_cols=132 Identities=19% Similarity=0.209 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--Ccc------c-----ceeeeeccccc----eeEeecccCCCccccEEEEeCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STH------Q-----GTVTSMEPNED----TFVLHSESTKGKIKPVHLVDVPG 125 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--~~~------~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~DtpG 125 (267)
+.++|+|+|+.++|||||..+|+.. ... . ..+....+... +.......+.++++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 5679999999999999999998521 110 0 01111111100 11111111234457899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
+.+|.....+.++-+|++|+|+|+..+ .+.. ...+....+ .++|+++++||+|..... .....+.+++.
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~G---V~~qT~~v~~~a~~------~~lp~i~fINK~Dr~~ad-~~~~~~~i~~~ 179 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKG---VEAQTRKLMDVCRM------RATPVMTFVNKMDREALH-PLDVMADIEQH 179 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTB---SCHHHHHHHHHHHH------TTCCEEEEEECTTSCCCC-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCC---cccccHHHHHHHHH------hCCceEEEEecccchhcc-hhHhhhhhhhh
Confidence 999999999999999999999999987 3333 333333333 789999999999987654 44444444443
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-17 Score=150.69 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--CCcccc-------eeeeecc----ccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-------TVTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+++|++|+|||||+|+|+. +.+... ......+ .+.+.......+....+.+++|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4567999999999999999999985 221110 0000000 00001101111122246899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
+...+..+++.+|++|+|+|++++ ...... ..+..+.. .+.|+++|+||+|+... ......+.+++
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g-~~~~~~-~~~~~~~~------~~~p~ilviNK~Dl~~~-~~~~~~~~l~~ 153 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSG-VEPQTE-TVWRQATT------YGVPRIVFVNKMDKLGA-NFEYSVSTLHD 153 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTB-SCHHHH-HHHHHHHH------TTCCEEEEEECTTSTTC-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCEEEEEECCCCC-CcHHHH-HHHHHHHH------cCCCEEEEEECCCcccc-chHHHHHHHHH
Confidence 999999999999999999999886 333333 33333332 57899999999999764 33334444443
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=131.59 Aligned_cols=138 Identities=11% Similarity=0.076 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------HH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-------LD 134 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-------~~ 134 (267)
...++|+++|.+|+|||||+|+|++..+.. +....+++..... ......+..+.+|||||+.++... +.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~--~~~~~~~t~~~~~--~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~ 112 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS--ISPFQSEGPRPVM--VSRSRAGFTLNIIDTPGLIEGGYINDMALNIIK 112 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC--CCSSSCCCSSCEE--EEEEETTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc--ccCCCCcceeeEE--EEEeeCCeEEEEEECCCCCCCccchHHHHHHHH
Confidence 457899999999999999999999876421 1111111111111 111233468999999999765422 11
Q ss_pred hh--hccCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHH
Q 024474 135 EF--LPQAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEID 206 (267)
Q Consensus 135 ~~--~~~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~ 206 (267)
.+ .+.+|++++|+|++.. ++... ..++..+..... .....|+++|+||+|+.... ..++..+.....+.
T Consensus 113 ~~~~~~~~d~il~v~~~d~~--~~~~~~~~~~~~l~~~~~-~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~ 186 (270)
T 1h65_A 113 SFLLDKTIDVLLYVDRLDAY--RVDNLDKLVAKAITDSFG-KGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALL 186 (270)
T ss_dssp HHTTTCEECEEEEEEESSCC--CCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCEEEEEEeCCCC--cCCHHHHHHHHHHHHHhC-cccccCEEEEEECcccCCcCCCCHHHHHHHHHHHHH
Confidence 22 2479999999998653 23322 344444433210 01226999999999997543 45554444444333
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-17 Score=139.19 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---ccee
Q 024474 18 KELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTV 94 (267)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~ 94 (267)
..-|..+.+.++.++.......+.. ...+..+ .....+...++++|++|+|||||++.|.+.... ...+
T Consensus 18 ~~~r~~l~~~i~~ie~~~~~~~~~~--~~~~~~l------~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 18 QGERATLAQAMTLVESRHPRHQALS--TQLLDAI------MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp TTCHHHHHHHHHHHHCCCHHHHHHH--HHHHHHH------GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCHHHHHhhhhHhhcCCchhhhHH--HHHHHhC------CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3347788888888877655433211 1111111 112456788999999999999999999642100 0011
Q ss_pred eeeccccce---------------------eEeecc-----------------cCCCccccEEEEeCCCCCCchhhHHhh
Q 024474 95 TSMEPNEDT---------------------FVLHSE-----------------STKGKIKPVHLVDVPGHSRLRPKLDEF 136 (267)
Q Consensus 95 ~~~~~~~~~---------------------~~~~~~-----------------~~~~~~~~~~l~DtpG~~~~~~~~~~~ 136 (267)
.+..+.... +..... .....++.+.+|||||..+.... .
T Consensus 90 ~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~ 166 (341)
T 2p67_A 90 IAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE---V 166 (341)
T ss_dssp EEECCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---H
T ss_pred EeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---H
Confidence 111111000 000000 00122468999999998764433 4
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
.+.+|++++|+|++.+ ...+..... . .+.|.++|+||+|+..........+.+++.+..+ .
T Consensus 167 ~~~aD~vl~Vvd~~~~-~~~~~l~~~---~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~-------~ 227 (341)
T 2p67_A 167 ARMVDCFISLQIAGGG-DDLQGIKKG---L--------MEVADLIVINKDDGDNHTNVAIARHMYESALHIL-------R 227 (341)
T ss_dssp HTTCSEEEEEECC-------CCCCHH---H--------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHS-------C
T ss_pred HHhCCEEEEEEeCCcc-HHHHHHHHh---h--------hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhc-------c
Confidence 6889999999999764 211111100 0 2457899999999864322222222222222110 0
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. .. .....++++||++|+ +++|+++|.+++
T Consensus 228 ~~-----------------~~-~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 228 RK-----------------YD-EWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp CS-----------------BT-TBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred cc-----------------cc-CCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 00 012368999999999 999999998764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-16 Score=136.10 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=101.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc-------hhhHHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL-------RPKLDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~-------~~~~~~~ 136 (267)
...|+++|++|||||||+++|++... .+..+..++..........++ ...+.+|||||+.+. .......
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~---~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~ 232 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP---KIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRH 232 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC---EECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc---cccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHH
Confidence 45799999999999999999988642 222222221111111122222 246899999998532 1122334
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+..++.+++++|++ . ..+..+..+..++..... .....|.++|+||+|+... ...+.+.+.+.
T Consensus 233 ~era~~lL~vvDls-~-~~~~~ls~g~~el~~la~-aL~~~P~ILVlNKlDl~~~----~~~~~l~~~l~---------- 295 (416)
T 1udx_A 233 IARTRVLLYVLDAA-D-EPLKTLETLRKEVGAYDP-ALLRRPSLVALNKVDLLEE----EAVKALADALA---------- 295 (416)
T ss_dssp HTSSSEEEEEEETT-S-CHHHHHHHHHHHHHHHCH-HHHHSCEEEEEECCTTSCH----HHHHHHHHHHH----------
T ss_pred HHHHHhhhEEeCCc-c-CCHHHHHHHHHHHHHHhH-HhhcCCEEEEEECCChhhH----HHHHHHHHHHH----------
Confidence 56799999999998 2 456666666666554321 0135789999999998643 12222222111
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++++ +++|+++|.+.+
T Consensus 296 ----------------------~~g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 296 ----------------------REGLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp ----------------------TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------------hcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence 112468999999999 999999998765
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=134.99 Aligned_cols=73 Identities=29% Similarity=0.330 Sum_probs=63.9
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCC----------CCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~ 183 (267)
+.+.+++|||+|++.++..|..|+++++++|||+|++ +. +++.+...|+..+..... ..++|+++++
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~-nr~~es~~~~~~i~~~~~--~~~~piiLv~ 235 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNT-SRLTESIAVFKDIMTNEF--LKGAVKLIFL 235 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCS-BHHHHHHHHHHHHHHCGG--GTTSEEEEEE
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccccccc-chHHHHHHHHHHHhhhhc--cCCCeEEEEE
Confidence 3468999999999999999999999999999999998 43 678889999999887643 2689999999
Q ss_pred ecCCCC
Q 024474 184 NKTDKV 189 (267)
Q Consensus 184 nK~Dl~ 189 (267)
||+|+.
T Consensus 236 NK~DL~ 241 (340)
T 4fid_A 236 NKMDLF 241 (340)
T ss_dssp ECHHHH
T ss_pred ECchhh
Confidence 999985
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-16 Score=146.71 Aligned_cols=144 Identities=18% Similarity=0.275 Sum_probs=97.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cccc-----ee-----------eeeccccceeEeec---------ccCCCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQG-----TV-----------TSMEPNEDTFVLHS---------ESTKGK 114 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~-----~~-----------~~~~~~~~~~~~~~---------~~~~~~ 114 (267)
.+.++|+|+|++|+|||||+++|+... .... .. .++......+.+.. ...++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 356799999999999999999998641 1000 00 01111111111110 012344
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---C
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---A 191 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~ 191 (267)
.+.+++|||||+.+|...+..+++.+|++|+|+|++++ .+.+.... +..... .++|+++|+||+|+.. .
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~-~~~~~~------~~~p~ilviNK~D~~~~e~~ 168 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG-VCVQTETV-LRQALG------ERIKPVVVINKVDRALLELQ 168 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB-SCHHHHHH-HHHHHH------TTCEEEEEEECHHHHHHTSC
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHH-HHHHHH------cCCCeEEEEECCCcchhhhc
Confidence 67899999999999999999999999999999999986 34444333 333332 5789999999999864 2
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh
Q 024474 192 HTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
.+.++....+.+.+..++....
T Consensus 169 ~~~~e~~~~~~~~~~~i~~~l~ 190 (842)
T 1n0u_A 169 VSKEDLYQTFARTVESVNVIVS 190 (842)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHh
Confidence 3667777777777776655543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=137.75 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeee--cccc----------ceeEeec----------------------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM--EPNE----------DTFVLHS---------------------- 108 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~--~~~~----------~~~~~~~---------------------- 108 (267)
..+.|+++|++|||||||+|+|++..+........ .|+. ..+....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 55699999999999999999999976522111100 0000 0000000
Q ss_pred ----------------ccCCCccccEEEEeCCCCCCc-------------hhhHHhhhccCCEEEEEEeCCCCCCchHHH
Q 024474 109 ----------------ESTKGKIKPVHLVDVPGHSRL-------------RPKLDEFLPQAAGIVFVVDALEFLPNCSAA 159 (267)
Q Consensus 109 ----------------~~~~~~~~~~~l~DtpG~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~ 159 (267)
.........+.+|||||+.++ ......|++++|++|+|+|+.+........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 000112346899999998876 556778999999999999976531112222
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 160 SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
..++..+ ...+.|+++|+||+|+....
T Consensus 193 ~~l~~~~------~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 193 IKISREV------DPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHS------CTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHh------cccCCCEEEEEeCCccCCCc
Confidence 2222222 13678999999999997543
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-17 Score=141.59 Aligned_cols=88 Identities=26% Similarity=0.283 Sum_probs=47.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeec----------------ccCCC-ccccEEEEeCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHS----------------ESTKG-KIKPVHLVDVPG 125 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~l~DtpG 125 (267)
++|+++|.||+|||||+|+|++....... .++..++.+...+.. ..+++ ....+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 48999999999999999999987521111 122223322211110 00111 235799999999
Q ss_pred CCCc----hhhHH---hhhccCCEEEEEEeCCCC
Q 024474 126 HSRL----RPKLD---EFLPQAAGIVFVVDALEF 152 (267)
Q Consensus 126 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~ 152 (267)
+.+. +.+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 22333 356899999999999874
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=136.46 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-cce-eeeecccc---------------------ceeEe----------ec
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGT-VTSMEPNE---------------------DTFVL----------HS 108 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~-~~~-~~~~~~~~---------------------~~~~~----------~~ 108 (267)
...++|+++|.+|+|||||+|+|++..+. ... +.+..|+. .++.. ..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998753 111 11111110 00000 00
Q ss_pred ----cc----------CCCccccEEEEeCCCCCC-------------chhhHHhhhccCCE-EEEEEeCCCCCCchHHHH
Q 024474 109 ----ES----------TKGKIKPVHLVDVPGHSR-------------LRPKLDEFLPQAAG-IVFVVDALEFLPNCSAAS 160 (267)
Q Consensus 109 ----~~----------~~~~~~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~-ii~v~d~~~~~~~~~~~~ 160 (267)
.. .......+.+|||||... +..+...|++.++. +++|+|++.. -.-....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~-~~~~~~~ 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDAL 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC-GGGCHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc-cchhHHH
Confidence 00 001135799999999643 34456677766664 5555666543 1111222
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccc
Q 024474 161 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHN 240 (267)
Q Consensus 161 ~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (267)
.++..+ . ..+.|+++|+||+|+...... ..+.++ . . .+.+. .+
T Consensus 188 ~i~~~~-~-----~~~~~~i~V~NK~Dl~~~~~~--~~~~~~--------------~----~---------~~~l~--~~ 230 (353)
T 2x2e_A 188 KVAKEV-D-----PQGQRTIGVITKLDLMDEGTD--ARDVLE--------------N----K---------LLPLR--RG 230 (353)
T ss_dssp HHHHHH-C-----TTCTTEEEEEECGGGSCTTCC--CHHHHT--------------T----C---------SSCCT--TC
T ss_pred HHHHHh-C-----cCCCceEEEeccccccCcchh--HHHHHh--------------C----C---------ccccc--CC
Confidence 233322 2 267899999999999754321 000000 0 0 00000 12
Q ss_pred eeEEEEeeeccCc-chhHHHHHHh
Q 024474 241 KVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 241 ~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++++||++|+ ++++++++.+
T Consensus 231 ~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 231 YIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp EEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ceEEEeCCcccccccccHHHHHHH
Confidence 2467889999999 9999988865
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-16 Score=125.08 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeee--cccc-----------ce-eEeec---ccC----------CCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM--EPNE-----------DT-FVLHS---EST----------KGK 114 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~--~~~~-----------~~-~~~~~---~~~----------~~~ 114 (267)
.+.++|+++|.+|+|||||+++|+........+..+ .+.. .. ..... ... ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 356799999999999999999998652111111111 1110 00 00000 000 112
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC--C
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--H 192 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~ 192 (267)
...+.+|||+|+..... .+....+.+++|+|++... .....+. .. .+.|+++|+||+|+... .
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~---~~~~~~~-~~--------~~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGD---DVVEKHP-EI--------FRVADLIVINKVALAEAVGA 172 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCT---THHHHCH-HH--------HHTCSEEEEECGGGHHHHTC
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcc---hhhhhhh-hh--------hhcCCEEEEecccCCcchhh
Confidence 35789999999522111 1113578899999998752 1111111 11 24678999999998642 2
Q ss_pred CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 193 TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++..+.+. .+ .....++++||++|+ +++++++|.+.+
T Consensus 173 ~~~~~~~~~~----~~------------------------------~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 173 DVEKMKADAK----LI------------------------------NPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp CHHHHHHHHH----HH------------------------------CTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----Hh------------------------------CCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 3333322222 11 123478999999999 999999998765
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=138.02 Aligned_cols=121 Identities=22% Similarity=0.331 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeE-eeccc--------------------CC--C------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFV-LHSES--------------------TK--G------ 113 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------~~--~------ 113 (267)
..++|+|+|.+|+|||||+|+|++..+....+ +..+++.... +.... .. +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~v-s~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRV-GPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCC-CSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCcc-CCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45799999999999999999999987531111 1111111110 00000 00 0
Q ss_pred --------c-cccEEEEeCCCCCC-----------chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCC
Q 024474 114 --------K-IKPVHLVDVPGHSR-----------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV 173 (267)
Q Consensus 114 --------~-~~~~~l~DtpG~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (267)
. ...+.+|||||+.+ +......++..+|++|+|+|+++. ........++..+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~-~~~~~~~~~l~~l~------ 215 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL-EISDEFSEAIGALR------ 215 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC-CCCHHHHHHHHHTT------
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC-CCCHHHHHHHHHHH------
Confidence 0 03689999999875 446677788999999999999874 23344445544432
Q ss_pred CCCCcEEEEEecCCCCCC
Q 024474 174 KKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 174 ~~~~pvivv~nK~Dl~~~ 191 (267)
..+.|+++|+||+|+...
T Consensus 216 ~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 216 GHEDKIRVVLNKADMVET 233 (550)
T ss_dssp TCGGGEEEEEECGGGSCH
T ss_pred hcCCCEEEEEECCCccCH
Confidence 256899999999999754
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-16 Score=144.71 Aligned_cols=122 Identities=20% Similarity=0.168 Sum_probs=84.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc--CCcccc-------eeeeeccc----cceeEeecccCCCccccEEEEeCCCCCCch
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD--GSTHQG-------TVTSMEPN----EDTFVLHSESTKGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-------~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 130 (267)
.++|+|+|+.++|||||..+|+. +..... ......+. +-+.......+..+++.++|+|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 46899999999999999999863 111110 00100000 112222233345566889999999999999
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
....+.++-+|++|+|+|+.++- .......+....+ .++|.++++||+|....+.
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV--~~qT~~v~~~a~~------~~lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGV--QAQTRILFHALRK------MGIPTIFFINKIDQNGIDL 136 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTT--CSHHHHHHHHHHH------HTCSCEECCEECCSSSCCS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCC--cHHHHHHHHHHHH------cCCCeEEEEeccccccCCH
Confidence 99999999999999999999862 2223333333333 6789999999999877654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-16 Score=131.66 Aligned_cols=162 Identities=15% Similarity=0.233 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC-Ccccceee----eeccccc-eeEeecccCCCccccEEEEeCCCC-------CC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG-STHQGTVT----SMEPNED-TFVLHSESTKGKIKPVHLVDVPGH-------SR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~-~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~l~DtpG~-------~~ 128 (267)
.-.++|+++|++|+|||||+++|.+. .++...+. ...++.. ..........+....+++|||+|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45579999999999999999998875 33222211 0011100 000001111333457899999998 44
Q ss_pred chhhHH-------hhhcc-------------CCEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 129 LRPKLD-------EFLPQ-------------AAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 129 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
+..... .+++. +++++|+.+++.. +++... ..+..+ ..+.|+++|+||.|
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~--~Ld~~~~~~l~~l-------~~~~~iilV~~K~D 166 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH--GLKPLDVAFMKAI-------HNKVNIVPVIAKAD 166 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS--SCCHHHHHHHHHH-------TTTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc--CCCHHHHHHHHHH-------HhcCCEEEEEEeCC
Confidence 555444 44433 3446666666442 233332 222222 14578999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCcchhHHHHHHhh
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQ 264 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~ 264 (267)
+..........+.+.+.+. ..++.|+++||++|+++++++++.+.
T Consensus 167 l~~~~e~~~~~~~~~~~~~--------------------------------~~~~~~~e~Sa~~~~v~e~f~~l~~~ 211 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIE--------------------------------EHNIKIYHLPDAESDEDEDFKEQTRL 211 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHH--------------------------------HTTCCCCCCC---------CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH--------------------------------HcCCeEEecCCccccccHHHHHHHHH
Confidence 9753222212222222222 12356899999999877776666554
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=134.83 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--------Ccccc-eee-----------eeccccceeEeecccCCCccccEEEEe
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--------STHQG-TVT-----------SMEPNEDTFVLHSESTKGKIKPVHLVD 122 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--------~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~D 122 (267)
+.++|+|+|+.++|||||..+|+.. ..... ... |+.....++.+.......+.+.++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4579999999999999999998521 11110 011 111122222222222233457899999
Q ss_pred CCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 123 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
||||.+|.....+.++-+|++|+|+|+..+ -.......+++..+ .++|.++|+||+|.....
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveG--V~~qT~~v~~~a~~------~~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSG--VEPQSETVWRQANK------YGVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTC--SCHHHHHHHHHHHH------HTCCEEEEEECSSSTTCC
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCC--CchhHHHHHHHHHH------cCCCeEEEEccccccCcc
Confidence 999999999999999999999999999987 22333444444443 689999999999987553
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=132.06 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceee----eeccccceeEeecccC--CCccccEEEEeCCCCCCch-----
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT----SMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRLR----- 130 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~----- 130 (267)
.-.++|+++|++|+|||||+|.|++..+...... ...++.. .......+ .+....+++|||+|+....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~-~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ-VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE-EEEEECC------CEEEEEEECC-----------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee-eeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 3456899999999999999999998765211110 0011111 11111111 2333468999999987542
Q ss_pred --hh-------HHh-----------hhccC--CEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 131 --PK-------LDE-----------FLPQA--AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 131 --~~-------~~~-----------~~~~~--d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.. ... ++.++ |+++|+++++. .++.... .++..+ . .++|+|+|+||+|
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~--~~L~~~d~~~lk~L-~------~~v~iIlVinK~D 178 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG--HGLKPLDIEFMKRL-H------EKVNIIPLIAKAD 178 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C--CSCCHHHHHHHHHH-T------TTSEEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc--cCCCHHHHHHHHHH-h------ccCcEEEEEEccc
Confidence 11 111 23333 45666666542 1233333 444443 2 4689999999999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 024474 188 KVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~ 206 (267)
+..........+.+.+.+.
T Consensus 179 ll~~~ev~~~k~~i~~~~~ 197 (418)
T 2qag_C 179 TLTPEECQQFKKQIMKEIQ 197 (418)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 9754333333344444443
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-15 Score=124.54 Aligned_cols=134 Identities=21% Similarity=0.161 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCCCchhh------HHhhhccCCEEEEEEeCCCCCCchHHHHHHH---HHHHhcCCCCCCCCcEEEEEecC
Q 024474 116 KPVHLVDVPGHSRLRPK------LDEFLPQAAGIVFVVDALEFLPNCSAASEYL---YDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~------~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
+.+.+|||||+.+.... ...++.. +++++++|+....+ ........ ..... ..+.|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-~~~~~~~~~~~~~~~~-----~~~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-PNDYCFVRFFALLIDL-----RLGATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-HHHHHHHHHHHHHHHH-----HHTSCEEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-HHHHHHHHHHHHHHhc-----ccCCCeEEEEecc
Confidence 58999999998764332 1134566 89999999875422 22222111 11111 1468999999999
Q ss_pred CCCCCCCHHHHHHHHH---HHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 187 DKVTAHTKEFIRKQME---KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 187 Dl~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
|+.......++.+.++ .....+.... ...+... +.+. -...+......++++||++|+ +++|+++|.
T Consensus 182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~---~~~~~~~-~~l~-----~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~ 252 (262)
T 1yrb_A 182 DLLSEEEKERHRKYFEDIDYLTARLKLDP---SMQGLMA-YKMC-----SMMTEVLPPVRVLYLSAKTREGFEDLETLAY 252 (262)
T ss_dssp GGCCHHHHHHHHHHHHCHHHHHHHHHHCC---SHHHHHH-HHHH-----HHHHHHSCCCCCEECCTTTCTTHHHHHHHHH
T ss_pred cccccccHHHHHHHHhChHHHHHHHhccc---cccchhH-hHHH-----HHHHHhcCcccceEEEecCcccHHHHHHHHH
Confidence 9875432222222221 1111110000 0000000 0000 000011122368999999999 999999998
Q ss_pred hhc
Q 024474 263 EQV 265 (267)
Q Consensus 263 ~~~ 265 (267)
+.+
T Consensus 253 ~~~ 255 (262)
T 1yrb_A 253 EHY 255 (262)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-15 Score=128.87 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=82.4
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCC---------CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
.+.+++|||+|++.++..|..++++++++|||+|+++. .+++.+...|+..+..... ..++|+++|+||
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~--~~~~piILv~NK 277 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV--FSNVSIILFLNK 277 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG--GTTSEEEEEEEC
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh--hCCCCEEEEEEC
Confidence 47899999999999999999999999999999999982 2578889999999887532 267999999999
Q ss_pred CCCCCC------------------CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccc--cceeEEE
Q 024474 186 TDKVTA------------------HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQC--HNKVSVA 245 (267)
Q Consensus 186 ~Dl~~~------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 245 (267)
+|+... ...++..+.+...+..+ ... ..++.++
T Consensus 278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l---------------------------~~~~~~~~~~~~ 330 (362)
T 1zcb_A 278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGK---------------------------RRDQQQRPLYHH 330 (362)
T ss_dssp HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTT---------------------------CSSCC--CCEEE
T ss_pred hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHh---------------------------hcccCCCceEEE
Confidence 998521 12222222221111110 000 2356789
Q ss_pred EeeeccCc-chhHHHHHHhhc
Q 024474 246 EASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 246 ~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
++||++|+ |+++++++.+.+
T Consensus 331 ~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 331 FTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEecCCchhHHHHHHHHHHHH
Confidence 99999999 999999987653
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=113.68 Aligned_cols=108 Identities=11% Similarity=0.151 Sum_probs=77.5
Q ss_pred CCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHH---HHHHhcCCCCCCCCcEEEEEecC-CCCCCCCHHHHHH
Q 024474 124 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYL---YDILTNSTVVKKKIPVLICCNKT-DKVTAHTKEFIRK 199 (267)
Q Consensus 124 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~pvivv~nK~-Dl~~~~~~~~~~~ 199 (267)
+|+..+++.|++|+.++|++|||+|+++. ...+ ....+ ..++.... ...+.|++|++||. |+..+.+..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~-~R~e-ak~EL~eL~~mL~ee~-~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAH-KRHE-WQDEFSHIMAMTDPAF-GSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTT-CCCC-HHHHHHHHHHHSCTTS-SCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccH-hHHH-HHHHHHHHHHHhcchh-hhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 38889999999999999999999999986 3343 55555 44444321 12688999999995 8888888877766
Q ss_pred HHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 200 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+. ...+...+.+..|||++|+ +.+.++||.++++
T Consensus 187 ~L~--------------------------------L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELH--------------------------------LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTT--------------------------------GGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcC--------------------------------CcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 554 1112457889999999999 9999999998875
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-14 Score=121.21 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeeccc-------CCC---ccccEEEEeCCCCCCchh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSES-------TKG---KIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~---~~~~~~l~DtpG~~~~~~ 131 (267)
..+|+++|.||+|||||+|+|++..+.... .+++.++.+...+.... +.. ....+++|||||+.++.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987632111 12344444333221100 000 014699999999987542
Q ss_pred -------hHHhhhccCCEEEEEEeCCC
Q 024474 132 -------KLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 132 -------~~~~~~~~~d~ii~v~d~~~ 151 (267)
....+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23346789999999999986
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-15 Score=128.04 Aligned_cols=72 Identities=25% Similarity=0.308 Sum_probs=64.3
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCC----------CCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALE----------FLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
.+.+++|||+|++.++..|..|+++++++|||||+++ . +++.....|+..+..... ..++|+++|+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~-ns~~e~~~~~~~i~~~~~--~~~~piiLvgN 292 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT-NRLQEALNLFKSIWNNRW--LRTISVILFLN 292 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCS-BHHHHHHHHHHHHHTCTT--CSSCCEEEEEE
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECccccccccccccc-chHHHHHHHHHHHHhccc--CCCCeEEEEEE
Confidence 3789999999999999999999999999999999998 5 789999999999887532 26789999999
Q ss_pred cCCCC
Q 024474 185 KTDKV 189 (267)
Q Consensus 185 K~Dl~ 189 (267)
|+|+.
T Consensus 293 K~DL~ 297 (402)
T 1azs_C 293 KQDLL 297 (402)
T ss_dssp CHHHH
T ss_pred Chhhh
Confidence 99984
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=124.30 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=62.1
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCC----------CCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~ 183 (267)
+.+.+++|||+|+++++..+..|+++++++|+|+|++ +. +++.+...|+..+..... ..++|+++|+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQK-NRMMETKELFDWVLKQPC--FEKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTS-BHHHHHHHHHHHHHTCGG--GSSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccch-hHHHHHHHHHHHHHhccc--cCCCeEEEEE
Confidence 5678999999999999999999999999999999997 44 678899999988887532 2679999999
Q ss_pred ecCCCC
Q 024474 184 NKTDKV 189 (267)
Q Consensus 184 nK~Dl~ 189 (267)
||+|+.
T Consensus 258 NK~DL~ 263 (354)
T 2xtz_A 258 NKFDIF 263 (354)
T ss_dssp ECHHHH
T ss_pred ECcchh
Confidence 999984
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=131.40 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-ccce-eeeecc-------ccceeEe--------------------------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST-HQGT-VTSMEP-------NEDTFVL-------------------------- 106 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~-~~~~-~~~~~~-------~~~~~~~-------------------------- 106 (267)
...++|+++|.+++|||||+|+|++..+ +.+. ..|..| ....+..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999765 2221 111000 0000000
Q ss_pred ------------ecccCCCccccEEEEeCCCCCCc-------------hhhHHhhh-ccCCEEEEEEeCCCCCCchHHHH
Q 024474 107 ------------HSESTKGKIKPVHLVDVPGHSRL-------------RPKLDEFL-PQAAGIVFVVDALEFLPNCSAAS 160 (267)
Q Consensus 107 ------------~~~~~~~~~~~~~l~DtpG~~~~-------------~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~ 160 (267)
...........+.|+||||.... ......|+ ..+|++++|+|++.... .....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-NSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-SCHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-hhHHH
Confidence 00000111235889999997651 12334455 46899999999987422 12221
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccc
Q 024474 161 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHN 240 (267)
Q Consensus 161 ~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (267)
..+..+ . ..+.|+++|+||+|+........ .+. . . .. +....+
T Consensus 208 ~ll~~L-~-----~~g~pvIlVlNKiDlv~~~~~~~---~il---~------~--------~~-----------~~l~lg 250 (772)
T 3zvr_A 208 KIAKEV-D-----PQGQRTIGVITKLDLMDEGTDAR---DVL---E------N--------KL-----------LPLRRG 250 (772)
T ss_dssp HHHHHH-C-----TTCSSEEEEEECTTSSCTTCCSH---HHH---T------T--------CS-----------SCCSSC
T ss_pred HHHHHH-H-----hcCCCEEEEEeCcccCCcchhhH---HHH---H------H--------Hh-----------hhhhcc
Confidence 222222 2 26789999999999975432110 000 0 0 00 000012
Q ss_pred eeEEEEeeeccCc-chhHHHHHHh
Q 024474 241 KVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 241 ~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++++||++|+ +++|.+.|.+
T Consensus 251 ~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 251 YIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp EEECCCCCCEESSSSEEHHHHHHH
T ss_pred CCceEEecccccccchhHHHHHHH
Confidence 3467889999999 9999998876
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-14 Score=119.36 Aligned_cols=201 Identities=13% Similarity=0.127 Sum_probs=105.5
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHc------C
Q 024474 14 EQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRD------G 87 (267)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~------~ 87 (267)
+..+..-+..+.+.+++++.......+-. ...+..+ .+...++..++++|++|||||||+|.|.+ +
T Consensus 13 ~~~~~~~r~~l~r~i~~ie~~~~~~~~~~--~~~l~~i------~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 13 ERLLAGDRAALARAITLAESRRADHRAAV--RDLIDAV------LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp HHHHTTCHHHHHHHHHHHTCSSHHHHHHH--HHHHHHH------GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHeeCCcccccCh--HHHHHhC------CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 33333347778888877766544433311 1112221 12245677899999999999999999974 2
Q ss_pred Ccccceeeeeccccce--------------------eEee-cc-----------------cCCCccccEEEEeCCCCCCc
Q 024474 88 STHQGTVTSMEPNEDT--------------------FVLH-SE-----------------STKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 88 ~~~~~~~~~~~~~~~~--------------------~~~~-~~-----------------~~~~~~~~~~l~DtpG~~~~ 129 (267)
.. .+.+..+.... .... .. .....++.+.++||||....
T Consensus 85 ~v---~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~ 161 (337)
T 2qm8_A 85 KV---AVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS 161 (337)
T ss_dssp CE---EEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC
T ss_pred EE---EEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc
Confidence 21 11111111100 0000 00 01112468999999998753
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKL 208 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~ 208 (267)
.. .....+|.+++|+|+..+ +..+.....+ ...|.++|+||+|+..... .....+.+...
T Consensus 162 ~~---~v~~~~d~vl~v~d~~~~-~~~~~i~~~i-----------~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a---- 222 (337)
T 2qm8_A 162 ET---AVADLTDFFLVLMLPGAG-DELQGIKKGI-----------FELADMIAVNKADDGDGERRASAAASEYRAA---- 222 (337)
T ss_dssp HH---HHHTTSSEEEEEECSCC-------CCTTH-----------HHHCSEEEEECCSTTCCHHHHHHHHHHHHHH----
T ss_pred hh---hHHhhCCEEEEEEcCCCc-ccHHHHHHHH-----------hccccEEEEEchhccCchhHHHHHHHHHHHH----
Confidence 32 334689999999998653 2111111111 1234577889999753211 11111111111
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+... .. ....+++.+||++|+ +++|.++|.+..
T Consensus 223 ---~~l~~~~-----------~~-------~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 223 ---LHILTPP-----------SA-------TWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ---HTTBCCS-----------BT-------TBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---HHhcccc-----------cc-------CCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1000000 00 002357889999999 999999998754
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=119.23 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=75.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHHhhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLDEFL 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~~~~ 137 (267)
.+|+++|.||||||||+|+|++... .+..++.++.+.......+.+ .+++++||||..+... ..-..+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~---~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTES---EAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCC---CGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCC---cccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 4899999999999999999998653 344444444444433333344 5799999999754321 233467
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+|++++|+|++++....+.+...+... .......|.++++||.|..
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~----~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGV----GIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHT----TEEETCCCCCEEEEECSSS
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHh----hHhhccCChhhhhhHhhhh
Confidence 88999999999987522222222222221 1112467889999999964
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.7e-14 Score=117.12 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=95.2
Q ss_pred HHHHHHHcCCcc-cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchH
Q 024474 79 VLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS 157 (267)
Q Consensus 79 sLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~ 157 (267)
+|+.+++.+.|. ..+.+++ ++........++ .+++||| +++++.+++.+++++|++|+|+|++++..++.
T Consensus 32 sl~~~~~~~~f~~~~~~pTi----Gd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~ 102 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYV----GDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTY 102 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCT----TCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHH
T ss_pred cEEEEEEcccccccCCCCCC----ccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHH
Confidence 577777777765 4433333 333222221122 7999999 88999999999999999999999998744677
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCccccc
Q 024474 158 AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQ 237 (267)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (267)
.+..|+..+.. .++|+++|+||+||...... +...+..+.+ .
T Consensus 103 ~l~~~l~~~~~------~~~piilv~NK~DL~~~~~v----~~~~~~~~~~---------------------------~- 144 (301)
T 1u0l_A 103 IIDKFLVLAEK------NELETVMVINKMDLYDEDDL----RKVRELEEIY---------------------------S- 144 (301)
T ss_dssp HHHHHHHHHHH------TTCEEEEEECCGGGCCHHHH----HHHHHHHHHH---------------------------T-
T ss_pred HHHHHHHHHHH------CCCCEEEEEeHHHcCCchhH----HHHHHHHHHH---------------------------h-
Confidence 88888876543 57899999999999753221 1122222211 0
Q ss_pred ccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 238 CHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 238 ~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.. +.++++||++|+ ++++++++...
T Consensus 145 -~~-~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 145 -GL-YPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp -TT-SCEEECCTTTCTTHHHHHHHHSSS
T ss_pred -hh-CcEEEEECCCCcCHHHHHHHhcCC
Confidence 01 468999999999 99999988653
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=108.46 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=86.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccc--------------eeEee-cccC--------------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNED--------------TFVLH-SEST-------------- 111 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~-------------- 111 (267)
..+.++|+++|.+|||||||+++|+...+....+.++..... ..... ....
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 346789999999999999999999876443322322221100 01111 0000
Q ss_pred CCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 112 KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 112 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
......+.++|++|...... .+-...+.++.++|............ .. .+.|.++|+||+|+...
T Consensus 115 ~~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~~~----~~--------~~~~~iiv~NK~Dl~~~ 179 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEKHP----GI--------MKTADLIVINKIDLADA 179 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTTCH----HH--------HTTCSEEEEECGGGHHH
T ss_pred hcCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhhhh----hH--------hhcCCEEEEeccccCch
Confidence 01123678888888432111 12223456677888543211111001 11 23678999999998642
Q ss_pred --CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 192 --HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 192 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...++..+.+ ..+ .....++++||++|+ +++++++|.+.+
T Consensus 180 ~~~~~~~~~~~~----~~~------------------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 180 VGADIKKMENDA----KRI------------------------------NPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HTCCHHHHHHHH----HHH------------------------------CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHh------------------------------CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 1222222222 111 123478999999999 999999998764
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=117.02 Aligned_cols=87 Identities=20% Similarity=0.304 Sum_probs=56.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeecc---------cCC-----CccccEEEEeCCCCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSE---------STK-----GKIKPVHLVDVPGHSR 128 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~l~DtpG~~~ 128 (267)
++|+++|.||+|||||+|+|++...... ..+|+.++.+...+... ... .....+++|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999999987542111 11234444332221100 001 1235799999999876
Q ss_pred ch-------hhHHhhhccCCEEEEEEeCCC
Q 024474 129 LR-------PKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 129 ~~-------~~~~~~~~~~d~ii~v~d~~~ 151 (267)
.. .....+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 234456899999999999986
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=111.92 Aligned_cols=109 Identities=11% Similarity=0.136 Sum_probs=80.9
Q ss_pred CCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHH---HHHhcCCCCCCCCcEEEEEec-CCCCCCCCHHHHH
Q 024474 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLY---DILTNSTVVKKKIPVLICCNK-TDKVTAHTKEFIR 198 (267)
Q Consensus 123 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~pvivv~nK-~Dl~~~~~~~~~~ 198 (267)
.+|+..+++.|++|+.++|++|||+|+++. ..++ ....+. .++.... ...+.|++|++|| .|+..+.+..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDr-eRle-ak~EL~eL~~mL~e~~-~l~~apLLVfANKkQDlp~Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAH-KRHE-WQDEFSHIMAMTDPAF-GSSGRPLLVLSCISQGDVKRMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTT-CCCC-HHHHHHHHHHHHCHHH-HCTTCCEEEEEEESSTTSCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcH-hHHH-HHHHHHHHHHHhcchh-hcCCCeEEEEeCCcccccCCCCHHHHH
Confidence 468899999999999999999999999987 3344 444333 4443211 0167899999997 6998888887776
Q ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 199 KQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.+. ...+...+.+..|||+||+ +.+.++||.+.++
T Consensus 271 e~L~--------------------------------L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELH--------------------------------LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTT--------------------------------GGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcC--------------------------------CccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 6544 1112457889999999999 9999999999875
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-12 Score=108.04 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=52.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeecccC-------C---CccccEEEEeCCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSEST-------K---GKIKPVHLVDVPGHSR 128 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~---~~~~~~~l~DtpG~~~ 128 (267)
.....+|+++|.+|+|||||+|+|++..+.... .+|..++.+...+..... . .....+++|||||+..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 356789999999999999999999987542111 123334333332211000 0 0023599999999886
Q ss_pred chh-------hHHhhhccCCEEEEEEeCCCC
Q 024474 129 LRP-------KLDEFLPQAAGIVFVVDALEF 152 (267)
Q Consensus 129 ~~~-------~~~~~~~~~d~ii~v~d~~~~ 152 (267)
..+ .+..+++.+|++++|+|+++.
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC---
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 544 456788999999999999753
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=105.33 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=60.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecc-cCCCccccEEEEeCCCCCCch-------------
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-STKGKIKPVHLVDVPGHSRLR------------- 130 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~DtpG~~~~~------------- 130 (267)
++++|+|++|+|||||+|.|.+..+.........+.......... ...+-...++++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 349999999999999999999875422111111111110011110 111112368999999976421
Q ss_pred -hhHHhhhc-------------c--CCE-EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 131 -PKLDEFLP-------------Q--AAG-IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 131 -~~~~~~~~-------------~--~d~-ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..+..++. . +|+ ++|+.|+..+ +......+...+. .+.|+|+|+||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~---l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS---LKSLDLVTMKKLD------SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC------CHHHHHHHHHTC------SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC---CCHHHHHHHHHHh------hCCCEEEEEcchhccch
Confidence 11111111 1 233 5556666544 3333333333332 57899999999998754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.09 E-value=9e-11 Score=98.64 Aligned_cols=113 Identities=17% Similarity=0.071 Sum_probs=77.2
Q ss_pred CccccEEEEe-CCC-----CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 113 GKIKPVHLVD-VPG-----HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 113 ~~~~~~~l~D-tpG-----~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
|..+.+..+| +.| ++++..+.+.+++++|++++|+|++++..++..+..|+..+.. .++|+++|+||+
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~------~~~~~ilV~NK~ 120 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY------FKVEPVIVFNKI 120 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH------TTCEEEEEECCG
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh------CCCCEEEEEEcc
Confidence 3345566665 333 5667777778999999999999999874477777888875543 678999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 187 DKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 187 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
|+.+....+. .+...+... ..++.++++||++|+ +++|++++...
T Consensus 121 DL~~~~~v~~-~~~~~~~~~--------------------------------~~g~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 121 DLLNEEEKKE-LERWISIYR--------------------------------DAGYDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp GGCCHHHHHH-HHHHHHHHH--------------------------------HTTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred cCCCccccHH-HHHHHHHHH--------------------------------HCCCeEEEEECCCCCCHHHHHhhccCc
Confidence 9974321110 111111111 112468999999999 99999887653
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-09 Score=93.97 Aligned_cols=115 Identities=24% Similarity=0.317 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH------cCCcccceeeeecccc-----------c--eeEeecc-c------------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR------DGSTHQGTVTSMEPNE-----------D--TFVLHSE-S------------ 110 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~------~~~~~~~~~~~~~~~~-----------~--~~~~~~~-~------------ 110 (267)
+...|+++|.+||||||++++|. +.+. .+.+.++.. . ...+... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kV---llVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al 176 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKT---CLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGV 176 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCE---EEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE---EEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHH
Confidence 35589999999999999999998 3321 111111100 0 0000000 0
Q ss_pred --CCCccccEEEEeCCCCCCchh-hHH---hh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcE-EE
Q 024474 111 --TKGKIKPVHLVDVPGHSRLRP-KLD---EF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LI 181 (267)
Q Consensus 111 --~~~~~~~~~l~DtpG~~~~~~-~~~---~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pv-iv 181 (267)
.....+.+.|+||||...... ... .. +..+|.+++|+|+..+.+ .......+.+ ..|+ .+
T Consensus 177 ~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~-~~~~a~~~~~----------~~~i~gv 245 (504)
T 2j37_W 177 EKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA-CEAQAKAFKD----------KVDVASV 245 (504)
T ss_dssp HHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT-HHHHHHHHHH----------HHCCCCE
T ss_pred HHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc-HHHHHHHHHh----------hcCceEE
Confidence 001346899999999764322 111 11 227899999999987622 2222222211 2464 89
Q ss_pred EEecCCCCCC
Q 024474 182 CCNKTDKVTA 191 (267)
Q Consensus 182 v~nK~Dl~~~ 191 (267)
|+||+|....
T Consensus 246 VlNK~D~~~~ 255 (504)
T 2j37_W 246 IVTKLDGHAK 255 (504)
T ss_dssp EEECTTSCCC
T ss_pred EEeCCccccc
Confidence 9999998743
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.7e-10 Score=95.51 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc---ccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGST---HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK------- 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------- 132 (267)
...+++++|.+|+|||||+|+|++... ....+...+.++.... ...... .+.++||||.......
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~---~~~liDtPG~~~~~~~~~~l~~~ 235 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLES---GATLYDTPGIINHHQMAHFVDAR 235 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECST---TCEEEECCSCCCCSSGGGGSCTT
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCC---CeEEEeCCCcCcHHHHHHHHhHH
Confidence 346899999999999999999987510 0112222333222222 222222 4899999997643321
Q ss_pred -HHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 133 -LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 133 -~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
...++ ...|.++|++++... -....+. .+ +.+ ...+.|+++++||+|.......+...+.+++.+
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~-~l-~~l-----~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQT-LFFGGLA-RL-DYI-----KGGRRSFVCYMANELTVHRTKLEKADSLYANQL 303 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEE-EEETTTE-EE-EEE-----ESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHB
T ss_pred HHHHHhcccccCceEEEEcCCce-EEECCEE-EE-EEc-----cCCCceEEEEecCCcccccccHHHHHHHHHHhc
Confidence 11222 678999999998431 0000000 01 111 135789999999999876655555555555443
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-10 Score=97.80 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc----cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTH----QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK------ 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------ 132 (267)
...+++++|.+|+|||||+|+|++.... ...+...+.++... ....+.. .+.++||||..+....
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~ 233 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDE---ESSLYDTPGIINHHQMAHYVGK 233 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSS---SCEEEECCCBCCTTSGGGGSCH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecC---CeEEEeCCCcCcHHHHHHHhhH
Confidence 3468999999999999999999875311 11122222222221 1122222 3889999998653311
Q ss_pred --HHhh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 024474 133 --LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 133 --~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~ 206 (267)
...+ ....+.++|++|+... -....+. .+ +.+ ...+.|+++|+||+|.......+...+.+++.+.
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~-~~-d~l-----~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQT-LFFSGLA-RF-DYV-----SGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTEE-EEETTTE-EE-EEE-----ESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred HHHHHhccccccCceEEEEcCCCE-EEEcceE-EE-EEe-----cCCCceEEEEecCccccccccHHHHHHHHHHHhC
Confidence 1112 3567889999998431 0011000 01 111 1357899999999999877666666666665443
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-09 Score=87.78 Aligned_cols=135 Identities=14% Similarity=0.217 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeee-----eccccceeEeecc-cCCCccccEEEEeCCCCCCchh------h
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS-----MEPNEDTFVLHSE-STKGKIKPVHLVDVPGHSRLRP------K 132 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~l~DtpG~~~~~~------~ 132 (267)
++++++|++|+|||||+|.|++...+...... ...+......... ...+-...++++|++|...... .
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 58999999999999999999875432211100 1010000011111 1112123689999999643110 1
Q ss_pred HH--------h--------------hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 133 LD--------E--------------FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 133 ~~--------~--------------~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.. . .+..+++.++++|.... .+......+...+.. . .++++|+||+|...
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~--gL~~lD~~~l~~L~~-----~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH--SLRPLDLEFMKHLSK-----V-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS--SCCHHHHHHHHHHHT-----T-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC--cCCHHHHHHHHHHHh-----c-CcEEEEEeccccCC
Confidence 11 1 11236889999996632 133333333333331 3 89999999999876
Q ss_pred CCCHHHHHHHHHHHHHH
Q 024474 191 AHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 191 ~~~~~~~~~~l~~~~~~ 207 (267)
........+.+.+.+..
T Consensus 155 ~~e~~~~k~~i~~~l~~ 171 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEV 171 (270)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 54444444444444443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-08 Score=86.83 Aligned_cols=164 Identities=14% Similarity=0.156 Sum_probs=87.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc-ceeeeecccc-c-eeEeecccCCCccccEEEEeCCCCCCchhhHHhh---
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-GTVTSMEPNE-D-TFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEF--- 136 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~--- 136 (267)
....++++|++|+|||||+|.|.+-..+. +.+..-.... . .+... ....-.+.++|++|..........+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q----~~~~~~ltv~D~~g~~~~~~~~~~~L~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK----HPNIPNVVFWDLPGIGSTNFPPDTYLEK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE----CSSCTTEEEEECCCGGGSSCCHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc----ccccCCeeehHhhcccchHHHHHHHHHH
Confidence 55589999999999999999999843221 1111111000 0 11111 1111268999999964322222222
Q ss_pred --hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC---------CCCCHHHHHHHHHHHH
Q 024474 137 --LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV---------TAHTKEFIRKQMEKEI 205 (267)
Q Consensus 137 --~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~---------~~~~~~~~~~~l~~~~ 205 (267)
+...+..++ ++...+ +.....+...+.. .+.|+++|.||.|+. +.....++.+.+.+..
T Consensus 144 ~~L~~~~~~~~-lS~G~~----~kqrv~la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 144 MKFYEYDFFII-ISATRF----KKNDIDIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp TTGGGCSEEEE-EESSCC----CHHHHHHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCccCCeEE-eCCCCc----cHHHHHHHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 233455555 776532 1222223333322 568999999999964 1223444444433322
Q ss_pred HH-HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeee--ccCc-chhHHHHHHhhcC
Q 024474 206 DK-LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG--LTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 206 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~g~-i~~l~~~l~~~~~ 266 (267)
.+ +... . .....++.+|+ .++. +++|.+.|.+.++
T Consensus 214 ~~~l~~~--g------------------------~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 214 VNTFREN--G------------------------IAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HHHHHHT--T------------------------CSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HHHHHhc--C------------------------CCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 10 0000 0 00124688899 5665 9999999988775
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.3e-09 Score=89.66 Aligned_cols=91 Identities=18% Similarity=0.303 Sum_probs=60.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc-ccce--eeeeccccceeEeeccc-------CCCc---cccEEEEeCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST-HQGT--VTSMEPNEDTFVLHSES-------TKGK---IKPVHLVDVPGHS 127 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~~-------~~~~---~~~~~l~DtpG~~ 127 (267)
...+.+++++|++|||||||+|.|++... .... .+++.|+.+...+.... .... +..+.+||+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 35678999999999999999999998653 1111 12344544444332100 0110 1258999999964
Q ss_pred C-------chhhHHhhhccCCEEEEEEeCCC
Q 024474 128 R-------LRPKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 128 ~-------~~~~~~~~~~~~d~ii~v~d~~~ 151 (267)
. +......+++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 33345667889999999999875
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-08 Score=84.16 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=37.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.....+++++|.||+|||||+|+|.+.... .+...+.++... .....+ ..+.++||||....
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~--~~~~~~g~T~~~--~~~~~~---~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIA--KTGDRPGITTSQ--QWVKVG---KELELLDTPGILWP 178 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC----------------CCEEET---TTEEEEECCCCCCS
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCcee--ecCCCCCeeeee--EEEEeC---CCEEEEECcCcCCC
Confidence 356679999999999999999999986531 222222222211 111111 26899999998643
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-08 Score=82.44 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=62.0
Q ss_pred EEeCCCCC-CchhhHHhhhccCCEEEEEEeCCCCCCchH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH
Q 024474 120 LVDVPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNCS-AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 197 (267)
Q Consensus 120 l~DtpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 197 (267)
+-+.||+. .........+..+|+++.|+|+.++..+.. .+..++ .++|+++|+||+|+.+. ...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----------~~kp~ilVlNK~DL~~~---~~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-----------KNKPRIMLLNKADKADA---AVT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----------SSSCEEEEEECGGGSCH---HHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----------CCCCEEEEEECcccCCH---HHH
Confidence 45678986 345567778999999999999998733322 233322 56899999999999752 111
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 198 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+..++.+. ..+++++.+||++|. +++|.+++.+.+
T Consensus 69 ----~~~~~~~~-----------------------------~~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 69 ----QQWKEHFE-----------------------------NQGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp ----HHHHHHHH-----------------------------TTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred ----HHHHHHHH-----------------------------hcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 11111110 112367889999999 999988877653
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-08 Score=85.25 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHH
Q 024474 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEK 203 (267)
Q Consensus 125 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~ 203 (267)
..++|+..+..+.+.+|++++|+|++++ . ..|...+.+. ..++|+++|+||+|+.+.. ..+...+.+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~---~---~~~~~~l~~~----~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~ 124 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDF---N---GSWLPGLHRF----VGNNKVLLVGNKADLIPKSVKHDKVKHWMRY 124 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSH---H---HHCCTTHHHH----SSSSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCC---c---ccHHHHHHHH----hCCCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence 3467888899999999999999999874 1 2222222221 1478999999999997543 23344443333
Q ss_pred HHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 204 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
...... .....++++||++|+ +++|+++|.+.
T Consensus 125 ~~~~~g-----------------------------~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 125 SAKQLG-----------------------------LKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHHHTT-----------------------------CCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHcC-----------------------------CCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 222110 011258899999999 99999999764
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.63 E-value=5e-08 Score=84.13 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=67.6
Q ss_pred CCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHH
Q 024474 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEK 203 (267)
Q Consensus 125 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~ 203 (267)
.+++|+..+.++++.++++++|+|++++..+ ....+.+.+ .+.|+++|+||+|+.+... .+...+.+.+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s---~~~~l~~~l-------~~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS---FIPGLPRFA-------ADNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGGG---CCSSHHHHC-------TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCCc---hhhHHHHHh-------CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 4778899999999999999999999986321 111122221 4689999999999976532 3334443333
Q ss_pred HHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 204 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...... .....++.+||++|. +++|+++|.+..
T Consensus 127 ~~~~~g-----------------------------~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELG-----------------------------LCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTT-----------------------------CCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHcC-----------------------------CCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 222100 011257899999999 999999997653
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-07 Score=81.82 Aligned_cols=115 Identities=20% Similarity=0.204 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccc---ceeeeecc-------------------------cccee-Ee--ecccCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEP-------------------------NEDTF-VL--HSESTK 112 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~---~~~~~~~~-------------------------~~~~~-~~--~~~~~~ 112 (267)
...|+++|++|+||||+++.|...-... ....+.++ ++.+. .. .... .
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~-~ 177 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME-K 177 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH-T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH-H
Confidence 4579999999999999999986521100 01111100 00000 00 0000 1
Q ss_pred CccccEEEEeCCCCCCchhhHHh------hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCC-c-EEEEEe
Q 024474 113 GKIKPVHLVDVPGHSRLRPKLDE------FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-P-VLICCN 184 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~~~~~------~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-p-vivv~n 184 (267)
...+.+.++||||.......... .+..+|.+++|+|+..+ . + .......+ . ... | ..+|+|
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~--~-~~~~~~~~-~------~~~~~i~gvVln 246 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG-Q--Q-AGIQAKAF-K------EAVGEIGSIIVT 246 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-G--G-HHHHHHHH-H------TTSCSCEEEEEE
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeecccc-H--H-HHHHHHHH-h------hcccCCeEEEEe
Confidence 13468999999997654222111 12368999999998765 2 1 22222222 1 234 5 889999
Q ss_pred cCCCCC
Q 024474 185 KTDKVT 190 (267)
Q Consensus 185 K~Dl~~ 190 (267)
|+|...
T Consensus 247 K~D~~~ 252 (432)
T 2v3c_C 247 KLDGSA 252 (432)
T ss_dssp CSSSCS
T ss_pred CCCCcc
Confidence 999853
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=77.12 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=39.9
Q ss_pred ccEEEEeCCCCCCchhhHH------hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLD------EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.|+||||......... .....+|.+++|+|+..+ .........+ .. .-.+..+|+||+|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g-q~a~~~a~~f---~~------~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG-QQAYNQALAF---KE------ATPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG-GGHHHHHHHH---HH------SCTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc-hhHHHHHHHH---Hh------hCCCeEEEEECCCCc
Confidence 6899999999654322211 123357999999999875 2222222222 21 223457899999975
Q ss_pred C
Q 024474 190 T 190 (267)
Q Consensus 190 ~ 190 (267)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=9.5e-08 Score=78.45 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=35.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.+++++|.+|+|||||+|+|.+..... +.....++.. ......+ ..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~--~~~~~g~T~~--~~~~~~~---~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS--VGAQPGITKG--IQWFSLE---NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------CC--SCEEECT---TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc--cCCCCCCccc--eEEEEeC---CCEEEEECCCcccC
Confidence 699999999999999999999876421 1111111111 1111111 36899999997754
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4e-07 Score=82.60 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=41.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeee-ccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM-EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
..+..+|+|+|.||+|||||+|+|++....-....+. +.+.+.+.+...........+.++||||..+.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 4566789999999999999999999876311111111 11122222111111123357999999998754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-06 Score=78.83 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTH 90 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~ 90 (267)
.-+.++|+|++|||||||++.+.+-..+
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCCCC
Confidence 4457999999999999999999986533
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3.7e-06 Score=73.62 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=39.5
Q ss_pred cccEEEEeCCCCCC--chh-h---HHh--hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 115 IKPVHLVDVPGHSR--LRP-K---LDE--FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 115 ~~~~~l~DtpG~~~--~~~-~---~~~--~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
.+.+.++||||... ... . ... .....|.+++|+|+..+ .........+.+. -.+..+|+||+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g-q~a~~~a~~f~~~---------~~~~gVIlTKl 248 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG-QKAYDLASRFHQA---------SPIGSVIITKM 248 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG-GGGHHHHHHHHHH---------CSSEEEEEECG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc-hHHHHHHHHHhcc---------cCCcEEEEecc
Confidence 46899999999644 211 1 111 12246899999999875 3333333333332 13467889999
Q ss_pred CCC
Q 024474 187 DKV 189 (267)
Q Consensus 187 Dl~ 189 (267)
|..
T Consensus 249 D~~ 251 (433)
T 3kl4_A 249 DGT 251 (433)
T ss_dssp GGC
T ss_pred ccc
Confidence 964
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.12 E-value=9e-06 Score=67.85 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=40.5
Q ss_pred ccccEEEEeCCCCCC--chh-hHH-----hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEe
Q 024474 114 KIKPVHLVDVPGHSR--LRP-KLD-----EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCN 184 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~n 184 (267)
..+.+.++||||... ... ... .....+|.+++|+|+... . ........+. ...| ..+|+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~---~~~~~~~~~~-------~~~~i~gvVln 247 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG-Q---KAYDLASKFN-------QASKIGTIIIT 247 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG-G---GHHHHHHHHH-------HTCTTEEEEEE
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch-H---HHHHHHHHHH-------hhCCCCEEEEe
Confidence 346899999999776 322 221 134478999999998754 1 2222222222 1244 678999
Q ss_pred cCCCC
Q 024474 185 KTDKV 189 (267)
Q Consensus 185 K~Dl~ 189 (267)
|.|..
T Consensus 248 k~D~~ 252 (297)
T 1j8m_F 248 KMDGT 252 (297)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 99975
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=8.6e-07 Score=72.71 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCCCC-chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 024474 123 VPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201 (267)
Q Consensus 123 tpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l 201 (267)
.|||.. ........+.++|+++.|+|+.++..+...... + . ++|.++|+||+||.+....+.+.+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l---------l--~k~~iivlNK~DL~~~~~~~~~~~-- 69 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F---------S--RKETIILLNKVDIADEKTTKKWVE-- 69 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C---------T--TSEEEEEEECGGGSCHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h---------c--CCCcEEEEECccCCCHHHHHHHHH--
Confidence 477653 334567788999999999999886332211111 1 1 689999999999975311111111
Q ss_pred HHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 202 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.+.. .+.++ .+||++|. +++|.++|.+.
T Consensus 70 --~~~~--------------------------------~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 70 --FFKK--------------------------------QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp --HHHH--------------------------------TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred --HHHH--------------------------------cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 1110 11235 78999999 99998887654
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.2e-05 Score=67.87 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=39.0
Q ss_pred cccEEEEeCCCCCCchhh-HH-----hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCC
Q 024474 115 IKPVHLVDVPGHSRLRPK-LD-----EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTD 187 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~-~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~D 187 (267)
.+.+.|+||||....... .. ..+..++.+++|+|+..+ ...-.....+. . ..+ .-+|+||.|
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g-~~~~~~~~~f~---~-------~l~i~gvVlnK~D 251 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG-QDAANTAKAFN---E-------ALPLTGVVLTKVD 251 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC-TTHHHHHHHHH---H-------HSCCCCEEEECTT
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh-HHHHHHHHHHh---c-------cCCCeEEEEecCC
Confidence 468999999997654222 21 124468999999999865 22222222121 1 123 247999999
Q ss_pred CCC
Q 024474 188 KVT 190 (267)
Q Consensus 188 l~~ 190 (267)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=6.8e-06 Score=68.73 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=38.2
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
.+..+.++|.+++|+|+..+..+...+..++...- ..++|+++|+||+||.+.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~------~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE------ANDIQPIICITKMDLIED 132 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH------TTTCEEEEEEECGGGCCC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH------HCCCCEEEEEECCccCch
Confidence 34467899999999999976445554444443222 267899999999999865
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=5e-05 Score=64.16 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..++++|++||||||+++.|.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.78 E-value=7e-05 Score=66.34 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 455799999999999999999865
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00024 Score=59.30 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++||||||+++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999864
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=3.5e-05 Score=67.68 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..-|.|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45567999999999999999999863
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.55 E-value=1.3e-05 Score=71.34 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--chhhH------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--LRPKL------ 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--~~~~~------ 133 (267)
....+|+++|.+|+||||+.++|...-... ...+.......+.. ...+......+||..|... .+..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~---~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRR---DMVKTYKSFEFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHH---HHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhh---hhccCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 345689999999999999999987642100 11111000000000 0011112346789888632 23332
Q ss_pred --HhhhccCCEEEEEEeCCCCCCchHHHHHHHH
Q 024474 134 --DEFLPQAAGIVFVVDALEFLPNCSAASEYLY 164 (267)
Q Consensus 134 --~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~ 164 (267)
..++..+++.++|+|.++. ..+....|+.
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~--~~~~R~~~~~ 143 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNT--TRERRAMIFN 143 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCC--SHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCC--CHHHHHHHHH
Confidence 4566667888999999985 3444444443
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00048 Score=53.64 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=47.4
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.+.+.++|||+.. .......+..+|.+++++.++.. + ......+..+.... ....+.++.+|+|+.|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~--~-~~~~~~~~~l~~~~-~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL--D-FSAAGSVVTVLEAQ-AYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT--T-HHHHHHHHHHHTTS-CGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH--H-HHHHHHHHHHHHHH-HhCCCCcEEEEEeccCCC
Confidence 3789999999866 34555677789999999998874 4 44544444443321 112456789999999954
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00015 Score=60.98 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++|+||||++..|.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999988743
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00047 Score=57.58 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..++++|++|+||||++..|.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 44689999999999999998764
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00013 Score=60.72 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++|+||||++..|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00019 Score=61.18 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=51.5
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
...++|.+++|.. ..+..+...+..++...-. .++|+++|+||+||.+... .+.+++.+..+.
T Consensus 127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~------~~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~------ 189 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCET------LQVEPLIVLNKIDLLDDEG----MDFVNEQMDIYR------ 189 (358)
T ss_dssp EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHH------HTCEEEEEEECGGGCCHHH----HHHHHHHHHHHH------
T ss_pred HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHh------cCCCEEEEEECccCCCchh----HHHHHHHHHHHH------
Confidence 3578899997755 4453445544444433222 5678899999999975421 111222222221
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
..+++++.+||.+|. +++|..++.
T Consensus 190 -----------------------~~G~~v~~~Sa~~~~gl~~L~~~~~ 214 (358)
T 2rcn_A 190 -----------------------NIGYRVLMVSSHTQDGLKPLEEALT 214 (358)
T ss_dssp -----------------------TTTCCEEECBTTTTBTHHHHHHHHT
T ss_pred -----------------------hCCCcEEEEecCCCcCHHHHHHhcC
Confidence 122357888999998 888776553
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0012 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...++|+|+.|||||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 456899999999999999999865
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.37 E-value=5e-05 Score=63.47 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++..++++|++|||||||+|.|.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 45689999999999999999998754
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.32 E-value=9.3e-05 Score=63.12 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++++|++|+|||||+|.|.+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 34589999999999999999999865
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00035 Score=58.31 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++++|++|+|||||+|.|. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45689999999999999999998 53
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0014 Score=57.25 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=37.2
Q ss_pred cccEEEEeCCCCCCchh-hHH-----hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRP-KLD-----EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+.++||||...... ... .....+|.+++|+|+... . ........+... .+ ..-+|+||.|.
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg-q---~av~~a~~f~~~-----l~-i~GVIlTKlD~ 249 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG-Q---EALSVARAFDEK-----VG-VTGLVLTKLDG 249 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT-T---HHHHHHHHHHHH-----TC-CCEEEEESGGG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch-H---HHHHHHHHHHhc-----CC-ceEEEEeCcCC
Confidence 46799999999764322 111 112358899999998764 2 222222222211 11 24578899986
Q ss_pred C
Q 024474 189 V 189 (267)
Q Consensus 189 ~ 189 (267)
.
T Consensus 250 ~ 250 (425)
T 2ffh_A 250 D 250 (425)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0024 Score=50.16 Aligned_cols=67 Identities=7% Similarity=-0.076 Sum_probs=46.6
Q ss_pred cccEEEEeCCCC-CCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 115 IKPVHLVDVPGH-SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 115 ~~~~~l~DtpG~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.+.+.++|||+. .. ......+..+|.+|+++.++. .+.......+..+... .+.++.+|+|+.|-..
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~--~~~~~~~~~~~~l~~~-----~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA--LALDALMLTIETLQKL-----GNNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH--HHHHHHHHHHHHHHHT-----CSSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc--hhHHHHHHHHHHHHhc-----cCCCEEEEEEecCCcc
Confidence 468999999987 43 344566778999999998875 3455555555444331 2456889999999653
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00018 Score=56.16 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..++++|++|||||||++.|.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999976
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00022 Score=54.79 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00024 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..++++|++|||||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4557999999999999999999864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00042 Score=57.82 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++++|++|+|||||+|.|.+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 35579999999999999999998754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00038 Score=53.59 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..++++|++||||||+++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00044 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++..++++|++|||||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567999999999999999999874
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0058 Score=49.63 Aligned_cols=65 Identities=8% Similarity=0.086 Sum_probs=45.1
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.+.+.++|||+... ......+..+|.+|+++.++.. +...+...+..+... ..+.++.+|+|+.+
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~--s~~~~~~~~~~l~~~----~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKW--AVESLDLFNFFVRKL----NLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTT--HHHHHHHHHHHHHTT----TCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChH--HHHHHHHHHHHHHHH----hccCCEEEEEeccc
Confidence 46799999998553 4455667789999999998763 455554444433332 24567889999994
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0005 Score=53.57 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..++++|++|+|||||++.|.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 45668999999999999999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00053 Score=54.45 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++..++|+|++|||||||++.|.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 466789999999999999999998753
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00042 Score=54.41 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..++|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46678999999999999999988763
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.084 Score=43.39 Aligned_cols=66 Identities=11% Similarity=-0.056 Sum_probs=43.8
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.|+|||+..... ........+|.+|+|+..... +...+...+..+... ....+-+|+|+.|..
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~--~~~~~~~~~~~l~~~-----g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVN--TLKEVETSLSRFEQN-----GIPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTS--BHHHHHHHHHHHHHT-----TCCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCC--cHHHHHHHHHHHHhC-----CCCEEEEEEcCcccc
Confidence 579999999866432 233455679999999998863 455555555444332 223356899999864
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0005 Score=54.49 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++..++|+|++|||||||++.|.+-.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356679999999999999999998743
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.029 Score=45.78 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=43.1
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvi-vv~nK~Dl~ 189 (267)
+.+.|+|||+..... ........+|.+|+|+..... +...+...+..+.. .+.+++ +|+|+.|..
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~--~~~~~~~~~~~l~~------~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENN--NKDEVKKGKELIEA------TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSC--CHHHHHHHHHHHHT------TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCC--cHHHHHHHHHHHHh------CCCCEEEEEEeCCcCC
Confidence 578999999865432 223344568999999998763 45555555444432 455666 899999964
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00059 Score=53.51 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|++|||||||++.+.+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45668999999999999999999874
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00062 Score=53.45 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++.-|+++|++||||||+++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 356679999999999999999998753
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00062 Score=52.57 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
-|+|+||+|||||||+++|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00073 Score=52.62 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++..++++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00088 Score=52.16 Aligned_cols=25 Identities=36% Similarity=0.588 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..++++|++||||||+++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00076 Score=52.69 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+++|++||||||+.+.|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45668999999999999999999763
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0012 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..++++|++|+|||||++.+.+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34668999999999999999988764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00095 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
++..|+++|++||||||+++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00077 Score=52.81 Aligned_cols=26 Identities=38% Similarity=0.350 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..++++|++|||||||++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35568999999999999999998763
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00079 Score=50.88 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00093 Score=53.61 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456689999999999999999998754
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00069 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++--++++|++|||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 455789999999999999998654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00097 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..|+++|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.001 Score=49.87 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456689999999999999999998753
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.001 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=52.96 Aligned_cols=27 Identities=41% Similarity=0.535 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998754
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0012 Score=55.10 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.6
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.-+++-.++|+|++|+|||||++.|.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 346777999999999999999999875
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0012 Score=52.99 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..|+++|++||||||+.+.|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3566899999999999999998864
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0049 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...+++.|++|+|||+++..+...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 335999999999999999988753
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0013 Score=51.22 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+++|++||||||+.+.|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999865
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=50.96 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 588999999999999999975
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=49.45 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q 024474 65 TTIVLAGLSGSGKTVLFYQL 84 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l 84 (267)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0014 Score=53.46 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455679999999999999999998754
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
-.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998854
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=52.47 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999998754
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.091 Score=43.47 Aligned_cols=65 Identities=11% Similarity=-0.073 Sum_probs=40.8
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
+.+.|+|||+...... .......+|.+|+|+..... ....+...+..+.. .+.+ +-+|+|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~--~~~~~~~~~~~l~~------~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN--TAKEVSLSMQRLEQ------AGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS--CTTHHHHHHHHHHH------TTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC--hHHHHHHHHHHHHh------CCCCeEEEEEeCCccC
Confidence 5789999998654322 22344679999999988763 34444444444433 2333 33788999864
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0018 Score=50.33 Aligned_cols=27 Identities=41% Similarity=0.540 Sum_probs=22.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..++..|+++|++||||||+.+.|.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346678999999999999999988763
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=54.00 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 355679999999999999999998754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|+.|+|||||++.+.+-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0015 Score=53.24 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 456689999999999999999998754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=52.92 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998753
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=49.88 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..+|+++|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0016 Score=53.10 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456689999999999999999998754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0014 Score=53.01 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355689999999999999999998854
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0014 Score=53.58 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455689999999999999999998754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0014 Score=53.30 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999998754
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0017 Score=52.79 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998854
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998763
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0018 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|+.|+|||||++.+.+-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999999985
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|++|||||||++.+.+-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 45568999999999999999998763
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=52.78 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355579999999999999999998854
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|++.|+|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0017 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++|+|+.|+|||||++.+.+-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998754
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0019 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|+++|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0018 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=52.44 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355579999999999999999998854
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.002 Score=49.17 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...++++|++|+|||||+++|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 567999999999999999999864
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=52.92 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=17.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH-cC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLR-DG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~-~~ 87 (267)
.++..++++|++|||||||++.|. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 455689999999999999999998 64
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0018 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|+.|+|||||++.+.+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35557999999999999999999985
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.002 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|+++|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.002 Score=48.83 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..|+++|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999763
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=54.44 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..++..++|+|++|||||||++.|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35667899999999999999998876
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=49.79 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=22.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..++..|+++|.+||||||+.+.|..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999998865
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999865
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=53.48 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355689999999999999999998754
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|+++|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=49.72 Aligned_cols=21 Identities=19% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++-.++++|+.|+|||||++.+.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.002 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455689999999999999999998754
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0047 Score=46.84 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||++++.+...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999988753
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0024 Score=49.48 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++..|++.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0021 Score=50.17 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+|+|++|+||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999874
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0019 Score=52.39 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345579999999999999999998754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0023 Score=48.88 Aligned_cols=23 Identities=48% Similarity=0.530 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.002 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..|+|+|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999866
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0038 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=20.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...+-|+|+|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999998754
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0026 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+...|+++|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999998864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0022 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=50.66 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|+++|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0023 Score=50.20 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=49.93 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999976
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0025 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|+++|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0025 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0044 Score=54.23 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=39.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc------------------CCcccceeeeecc-ccceeEeec----ccCCCccccE
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD------------------GSTHQGTVTSMEP-NEDTFVLHS----ESTKGKIKPV 118 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~------------------~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~ 118 (267)
.+..-|.|+|+.++|||+|+|.|++ ..|..+ ++..+ |.+-+.... ...++....+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~--~~~~~~TkGIWmw~~p~~~~~~~g~~~~v 142 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR--GGSERETTGIQIWSEIFLINKPDGKKVAV 142 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCC--CSSSCCCCSEEEESSCEEEECTTSCEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeC--CCCCCcCceEEEecCcccccCCCCCeeEE
Confidence 3455678999999999999996641 122111 11122 223333221 1225556789
Q ss_pred EEEeCCCCCCc
Q 024474 119 HLVDVPGHSRL 129 (267)
Q Consensus 119 ~l~DtpG~~~~ 129 (267)
.++||.|..+.
T Consensus 143 lllDTEG~~d~ 153 (457)
T 4ido_A 143 LLMDTQGTFDS 153 (457)
T ss_dssp EEEEECCBTCT
T ss_pred EEEeccCCCCc
Confidence 99999997654
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=50.31 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+..|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0027 Score=48.33 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+++|++|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 455799999999999999999874
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0026 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456689999999999999999998754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0028 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....++++|++|+|||||+.+|..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999876
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=49.77 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+-.++++|++|+|||||++.|.+-.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34489999999999999999998754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0032 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....|+++|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999865
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0031 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.071 Score=38.83 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....|++.|++|+|||++...+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 35567999999999999999998764
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0031 Score=49.19 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0036 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+..+|++.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999999864
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0017 Score=54.10 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++|+|+.|+|||||++.|.+-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 456689999999999999999988743
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=47.41 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998874
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0029 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0024 Score=50.46 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++-.++++|++|+|||||++.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999987
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0036 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
.++..|+|+|++||||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999998
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0075 Score=49.88 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+...|+|+|++|||||||.+.|.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0033 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
+-.++++|+.|+|||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5589999999999999999998865
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0069 Score=47.89 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|++|+|||+|+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988753
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.003 Score=49.11 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..++++|++|+||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998865
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0031 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0015 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..++|+|++|+|||||++.|.+-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998874
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0038 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++-.++|+|++|||||||++.+.+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3348999999999999999998763
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.016 Score=48.47 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHhhcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 57 ~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..........+.+.|+||+|||++++.++..
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3334567889999999999999999988653
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0035 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+...|++.|++||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999999874
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.003 Score=47.86 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+|+++|++||||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0058 Score=46.19 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||+++..+...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999988653
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0032 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..|+|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998876
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0037 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+|+++|+|||||+|...+|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0038 Score=53.16 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 355578999999999999999998854
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0054 Score=52.40 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
..+-.++|+|++|+|||||++.|.+-.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 355689999999999999999998754
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0036 Score=47.60 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999876
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0041 Score=53.06 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 455679999999999999999998754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0032 Score=52.01 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+..|+++|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999975
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0036 Score=50.86 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.006 Score=47.63 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+...+++.||||+|||+++.++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999888765
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0053 Score=50.33 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4999999999999999999874
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0038 Score=49.00 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0027 Score=54.30 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998764
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0043 Score=52.89 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 355679999999999999999998754
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0028 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=16.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999864
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0044 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0045 Score=52.85 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 355679999999999999999998754
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0049 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+..|+++|++||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.004 Score=48.13 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45668999999999999999999865
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0048 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 355679999999999999999998854
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0042 Score=52.86 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345579999999999999999998754
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.004 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++-.++++|++||||||+++.|.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 445799999999999999998865
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.005 Score=52.76 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 455679999999999999999998754
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.004 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|++||||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34557999999999999999998763
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0047 Score=46.25 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.004 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0048 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0044 Score=47.25 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0035 Score=49.89 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45668999999999999999998764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0064 Score=54.39 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++|+|++||||||+++.+++--
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34469999999999999999998743
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0051 Score=47.14 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.012 Score=46.68 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=19.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++.-+++.|++|+||||++-++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHH
Confidence 3456788899999999998776543
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0056 Score=48.38 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.-|+++|+|||||+|...+|...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34677999999999999988753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0051 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45578999999999999999998754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0056 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|++.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0056 Score=48.45 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0056 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...++++|++|+|||||++.+.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999998763
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0047 Score=50.02 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999865
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0075 Score=47.17 Aligned_cols=25 Identities=44% Similarity=0.610 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..|+++|++|+||||+.+.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998865
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0033 Score=50.84 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+..|+++|++||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999998753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0055 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++-.++++|++|+|||||++.+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 556799999999999999999874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0058 Score=48.69 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++..|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5668999999999999999998753
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0042 Score=52.75 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 355579999999999999999998754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0064 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|++|||||||++.+.+-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 45668999999999999999999874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0058 Score=53.92 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=23.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
-..+..++|+|+.|||||||++.|.+-
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 357789999999999999999998764
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.026 Score=46.08 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||+|++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667999999999999999998764
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.016 Score=49.48 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0058 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..|+++|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0025 Score=49.84 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999865
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0064 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.019 Score=44.30 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988753
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0065 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345799999999999999998865
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.016 Score=49.12 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....+|+++|++|+||||+...|.+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34456799999999999999987754
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0059 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0085 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++|+|++|||||||++.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999998763
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0081 Score=46.96 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++-.++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999987
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.004 Score=53.02 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355679999999999999999998754
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0078 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
-+.+..++++|++|+|||||++.+.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35666899999999999999999886
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0084 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...++++|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999998763
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0078 Score=49.70 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++--++|+|++|+|||||+..+.+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46668999999999999999988653
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.01 Score=51.81 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.8
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+....|++.||||+|||+|..++.+.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3455678999999999999999999874
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0072 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999754
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0084 Score=44.94 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.-.|++.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998864
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.021 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||++++.+...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44558999999999999999988753
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.008 Score=49.42 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+|.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999873
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.042 Score=47.88 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=22.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....-+++.||||+|||+|+.++.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345567999999999999999999863
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0096 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.049 Score=44.95 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=20.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....+++.|+||+|||+++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455799999999999999986654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0089 Score=50.76 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-+++++|++|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567799999999999999999998854
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0089 Score=47.52 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|++|+|||||+..+...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45668999999999999999999873
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.03 Score=43.86 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+++.|++|+|||+++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0085 Score=48.33 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+...|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999998865
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.013 Score=48.67 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||+|++.+.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45567999999999999999998764
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.013 Score=51.24 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.8
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
......-|++.||||+|||+|.+++.+.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456678999999999999999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.011 Score=53.32 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.|.+-.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999998753
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0096 Score=54.21 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|++|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45589999999999999999998754
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.012 Score=46.95 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+...|+++|++|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5667899999999999999998875
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.011 Score=43.69 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 024474 66 TIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~ 85 (267)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.011 Score=53.87 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
+++-.++++|+.|+|||||++.+.+-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.02 Score=48.23 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+...+++.|++|+||||+++.+.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3345999999999999999998764
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.012 Score=48.63 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...-+++.|+||+|||+|...+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999998753
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.012 Score=48.42 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||++++.+.+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34568999999999999999998764
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.014 Score=50.34 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....-+++.||||+|||.|..++.+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 445567999999999999999999864
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.01 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHH
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQL 84 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l 84 (267)
..+..||+++|.+||||||++.++
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 356789999999999999999886
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.013 Score=47.14 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....+++.|++|+|||+++..+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999876
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.013 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....++|.|++|+|||||++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999998763
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.046 Score=42.93 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCCCCHHH-HHHHHHcCCcccceeeeeccccceeEe--ecccCCCccccEEEEeCCCCCCchhhHHhhhc
Q 024474 62 KKSTTIVLAGLSGSGKTV-LFYQLRDGSTHQGTVTSMEPNEDTFVL--HSESTKGKIKPVHLVDVPGHSRLRPKLDEFLP 138 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSs-Ll~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 138 (267)
..+.-.++.|+.|+|||| |+.++.........+.-+.|...+... ....-.+....-..++.+ .+ .......
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~--~d---i~~~i~~ 100 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA--SE---IMTHDLT 100 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG--GG---GGGSCCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH--HH---HHHHHhc
Confidence 345678899999999999 555443211111111112221111110 011112222222222221 11 1111113
Q ss_pred cCCEEEEEEeCCCCCCchH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 139 QAAGIVFVVDALEFLPNCS-AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..| ++.+|=... +. .+.+.+..+.. .++||++.+=..|=...
T Consensus 101 ~~d--vV~IDEaQF---f~~~~v~~l~~la~------~gi~Vi~~GLd~DF~~~ 143 (219)
T 3e2i_A 101 NVD--VIGIDEVQF---FDDEIVSIVEKLSA------DGHRVIVAGLDMDFRGE 143 (219)
T ss_dssp TCS--EEEECCGGG---SCTHHHHHHHHHHH------TTCEEEEEEESBCTTSC
T ss_pred CCC--EEEEechhc---CCHHHHHHHHHHHH------CCCEEEEeecccccccC
Confidence 344 445664443 33 45566666653 68999999999996543
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.015 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+...+++.|++|+||||+++.+.+
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 334499999999999999998876
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.013 Score=51.37 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=24.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
-.++-+++|+|++|+|||||++.+.+..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3567799999999999999999998754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.015 Score=53.21 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.|.+-.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 356689999999999999999998753
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.035 Score=45.09 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
......+++.|++|+|||+++..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345568999999999999999998763
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=54.03 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|+|||||++.+.+-.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 345689999999999999999998754
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.077 Score=46.11 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=24.1
Q ss_pred hhcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 59 ~~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...+...-|++.||||+|||+|..++.+.
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 33455678999999999999999999864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.013 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.014 Score=47.81 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++-.++|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 566899999999999999998875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.013 Score=52.76 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.|.+-.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345578999999999999999998753
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.013 Score=45.25 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999988653
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.012 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
-.++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999998865
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.016 Score=44.98 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..|+|+|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45579999999999999999998754
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.014 Score=49.99 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 024474 66 TIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~ 85 (267)
-.+|+|+.|+|||||++.++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57799999999999999976
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0094 Score=54.23 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
+++-.++++|++|+|||||++.+.+-.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345589999999999999999888754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.016 Score=53.00 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.|.+-.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 355689999999999999999998753
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.28 Score=39.40 Aligned_cols=70 Identities=17% Similarity=-0.020 Sum_probs=40.5
Q ss_pred cccEEEEeCCCCCCchhhH-HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~-~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl 188 (267)
.+.+.++||||........ ......+|.+|+++.++. .+...+...+..+..... ..+.+ +-+|.|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~--~s~~~~~~~~~~l~~~~~--~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM--MALYAANNISKGIQKYAK--SGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH--HHHHHHHHHHHHHHHHBT--TBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCch--hhHHHHHHHHHHHHHHHh--cCCCcEEEEEeecCCc
Confidence 4789999999854322221 112246899999998765 245544444443332111 12445 4689999873
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0097 Score=48.27 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+|.|.+||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999988764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.015 Score=49.41 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999998753
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.033 Score=43.00 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=18.1
Q ss_pred CCCEEEEEcCCCCCHH-HHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKT-VLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKS-sLl~~l~~ 86 (267)
.+.-.++.|+.|+||| .|++++-+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n 43 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRR 43 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH
Confidence 3456888999999999 66666543
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.021 Score=50.08 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=23.9
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.-....-|++.||||+|||+|..++.+.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3456678999999999999999999864
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.032 Score=49.29 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++++|+||+|||++++.+...
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999988653
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|++|+|||||++.+.+-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999987753
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.041 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+++.|++|+|||+++..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988763
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.016 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....+++.|++|+|||+|++.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999998876
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.054 Score=46.01 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|+||+|||++...+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988753
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.02 Score=45.55 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=20.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++--++++|++|+|||||+.+++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999877753
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.021 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...-|+++|++||||||+.++|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999998763
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.019 Score=51.79 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++|+|+.|+|||||++.|.+-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998854
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.019 Score=44.41 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.019 Score=47.30 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....+++.|++|+|||++++.+..
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998865
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.022 Score=47.99 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+...|+|+|++|+|||+|...|...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3347999999999999999999864
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.049 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+++.|+||+|||+|...+...
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHH
Confidence 48999999999999999998763
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.084 Score=45.04 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++.-+.|.|++|+|||+|...+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3556789999999999999988754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.022 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|+||+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 4467999999999999999998863
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.021 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+..|++.|.+||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.019 Score=51.72 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|+.|+|||||++.|.+-.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999998754
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.026 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+++.|++|+|||++++.+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 44999999999999999988764
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.064 Score=44.93 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||++++.+...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34557999999999999999998653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.021 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|+.|+|||||++.|.+-.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998854
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.54 E-value=0.024 Score=47.46 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|+||+|||+|+..+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3567999999999999999998763
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.014 Score=42.62 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....|++.|++|+|||++...+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4457999999999999999987664
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.057 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...+++.|+||+|||+++..+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.014 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=17.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.019 Score=48.73 Aligned_cols=26 Identities=31% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..+.|+|++|+|||||++.++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46668999999999999999998764
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.013 Score=47.53 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|++|+|||+|++.+...
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3445899999999999999998763
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.021 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=18.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++.-|++.|++||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 267 | ||||
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 4e-29 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 6e-25 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 7e-08 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 1e-07 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 3e-07 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 5e-07 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 9e-07 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 2e-06 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 3e-06 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 4e-06 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 5e-06 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 7e-06 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 2e-05 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 3e-05 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 3e-05 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 3e-05 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 1e-04 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 2e-04 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 2e-04 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 2e-04 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-04 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 4e-04 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 5e-04 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 6e-04 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 7e-04 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 0.001 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 0.001 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 0.002 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 0.002 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 0.003 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 0.004 |
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 107 bits (267), Expect = 4e-29
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 14/205 (6%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
++ GL SGKT+LF +L G ++ T TS+ + + ++ +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTG-QYRDTQTSITDSSAIYKVN---NNRGNSLTLIDLPGHE 58
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
S LD F A +VFVVD+ F +E+LY +L +S +K +LI CNK
Sbjct: 59 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 118
Query: 187 DKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQAFSFSQCHNKVS 243
D A + + I++Q+EKE++ LR +RSA ++ T LG G+ F FSQ KV
Sbjct: 119 DIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVE 178
Query: 244 VAEASGLTGE-------ISQVEQFI 261
E S G I +E+++
Sbjct: 179 FLECSAKGGRGDTGSADIQDLEKWL 203
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.6 bits (239), Expect = 6e-25
Identities = 58/214 (27%), Positives = 86/214 (40%), Gaps = 23/214 (10%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG 125
+I++AG SGKT L L S + V LVD PG
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTV---------VSQEPLSAADYDGSGVTLVDFPG 55
Query: 126 HSRLRPKLDEFLPQAAGIV----FVVDALEFLPNCSAASEYLYDILTNSTVVKKK-IPVL 180
H +LR KL ++L A V F+VD+ + +E+L DIL+ + + I +L
Sbjct: 56 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115
Query: 181 ICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR---------SAVSEADVTNDFTLGIPGQ 231
I CNK++ TA I+ +E EI K+ R E N +
Sbjct: 116 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175
Query: 232 AFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 265
F F+ V E S +ISQ ++I E++
Sbjct: 176 GFKFANLEASVVAFEGSINKRKISQWREWIDEKL 209
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (116), Expect = 7e-08
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I+L G SG GK+ L + + + +T++ + F + + GK + + D G
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID---FKIKTVDINGKKVKLQIWDTAGQ 61
Query: 127 SRLRPKLDEFLPQAAGIVFVVDA 149
R R + A GI+ V D
Sbjct: 62 ERFRTITTAYYRGAMGIILVYDI 84
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.2 bits (114), Expect = 1e-07
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
++L G SG GKT + ++ + + + ++++ F + + GK + + D G
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG---IDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 127 SRLRPKLDEFLPQAAGIVFVVDA 149
R R + A GI+ V D
Sbjct: 66 ERFRTITTAYYRGAMGIMLVYDI 88
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 47.3 bits (111), Expect = 3e-07
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)
Query: 55 LLQVFRRKKSTT-----IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE 109
LL + R+ KS I+L GL +GKT L QL T T + +
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGF--------NIK 53
Query: 110 STKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTN 169
S + + +++ D+ G ++RP + +++V+D+ +
Sbjct: 54 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTELL 110
Query: 170 STVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204
+PVLI NK D +TA I + +
Sbjct: 111 EEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLH 145
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 5e-07
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 7/121 (5%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G SG GK+ L + + + +++ T + GK + D G
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ---VDGKTIKAQIWDTAGQ 63
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
R R + A G + V D + +L ++ ++ I +++ NK+
Sbjct: 64 ERYRRITSAYYRGAVGALLVYD-IAKHLTYENVERWLKELRDHA---DSNIVIMLVGNKS 119
Query: 187 D 187
D
Sbjct: 120 D 120
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.6 bits (107), Expect = 9e-07
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ G S GKT ++ D S V+++ + ++ + K+ + D G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKL---QIWDTAGQ 64
Query: 127 SRLRPKLDEFLPQAAGIVFVVDA 149
R R + A G + + D
Sbjct: 65 ERYRTITTAYYRGAMGFILMYDI 87
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 2e-06
Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 6/159 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
IVL G +G GKT L + G G ++ F++ + G+ + + D G
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATI---GVDFMIKTVEINGEKVKLQIWDTAGQ 64
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
R R + A ++ D S V I VL+
Sbjct: 65 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV---ITVLVGNKID 121
Query: 187 DKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225
+ ++ + D SA +V F
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 160
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 3e-06
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
++ G +G+GK+ L +Q + S F + GK + + D G
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKD---DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 64
Query: 127 SRLRPKLDEFLPQAAGIVFVVD 148
R R + AAG + V D
Sbjct: 65 ERFRSVTRSYYRGAAGALLVYD 86
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 4e-06
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ G SG GK+ L + D + ++ + + + K K+ + D G
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKL---AIWDTAGQ 66
Query: 127 SRLRPKLDEFLPQAAGIVFVVDA 149
R R + A G++ V D
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDV 89
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (102), Expect = 5e-06
Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
++L G SG GK+ L + D + ++++ F + + GK + + D G
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTI---GVDFKIKTVELDGKTVKLQIWDTAGQ 65
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185
R R + + GI+ V D + + + + + + L+ NK
Sbjct: 66 ERFRTITSSYYRGSHGIIIVYD----VTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 120
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 43.0 bits (100), Expect = 7e-06
Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 11/150 (7%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGK 114
+L K I++ GL +GKT + Y+L+ G + T + E+ K
Sbjct: 3 VLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTI--------PTVGFNVETVTYK 54
Query: 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVK 174
++ DV G ++RP + G++FVVD + A E I
Sbjct: 55 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM--- 111
Query: 175 KKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204
+ +LI NK D A I++++
Sbjct: 112 RDAIILIFANKQDLPDAMKPHEIQEKLGLT 141
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 2e-05
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 7/121 (5%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
++ G G GK+ L +Q + ++ T ++ G+ + + D G
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE---VSGQKIKLQIWDTAGQ 63
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
R R + AAG + V + S + + + +++ NK
Sbjct: 64 ERFRAVTRSYYRGAAGALMVY----DITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 119
Query: 187 D 187
D
Sbjct: 120 D 120
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 3e-05
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
++L G SG GKT L + +DG+ GT S F G + + D G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV--GIDFRNKVLDVDGVKVKLQMWDTAGQ 66
Query: 127 SRLRPKLDEFLPQAAGIVFVVD 148
R R + A ++ + D
Sbjct: 67 ERFRSVTHAYYRDAHALLLLYD 88
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 3e-05
Identities = 25/147 (17%), Positives = 40/147 (27%), Gaps = 9/147 (6%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGS---THQGTVTSMEPNEDTFVL----HSESTKGKIKPVH 119
++ G SG GKT Y+ D TV + + S K +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
L D G R R F A G + + D + + + V
Sbjct: 68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC--ENPDIV 125
Query: 180 LICCNKTDKVTAHTKEFIRKQMEKEID 206
LI E +++ +
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYG 152
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 41.1 bits (95), Expect = 3e-05
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG 113
+ +++ K I++ GL G+GKT + Y+L+ G T + E+
Sbjct: 7 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTK--------PTIGFNVETLSY 58
Query: 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV 173
K +++ D+ G + +RP + A ++FVVD+ + + AS+ L+ +L +
Sbjct: 59 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMST-ASKELHLMLQEEEL- 116
Query: 174 KKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204
+ +L+ NK D+ A + + K++
Sbjct: 117 -QDAALLVFANKQDQPGALSASEVSKELNLV 146
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 14/150 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+ + G +GSGK+ LR G ++ + + + I V D+PG
Sbjct: 59 VAVTGETGSGKSSFINTLR-GIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117
Query: 127 SRLRPKLDEFL---PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183
D +L F++ + DI + K
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKN--------DIDIAKAISMMKKEFYFVR 169
Query: 184 NKTDKVTAHTKEFIRKQMEKE--IDKLRAS 211
K D + + + +KE + +R +
Sbjct: 170 TKVDSDITNEADGEPQTFDKEKVLQDIRLN 199
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ G S GKT L Y+ G T ++ + + + + KI+
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
+ + A V+ + + + A E L IP ++ NK
Sbjct: 65 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-----NDIPRILVGNK- 118
Query: 187 DKVTAHTKEFIRKQMEKEIDKLRASR-------SAVSEADVTN 222
+ K + SA + D +
Sbjct: 119 -----CDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 156
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 22/139 (15%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
+ + ++L G SGK+ + Q+R V + E F + H+
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETKF-------QVDKVNFHMF 52
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSA---------ASEYLYDILTNSTV 172
DV G R K + I+FVV + + A I N +
Sbjct: 53 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 112
Query: 173 VKKKIPVLICCNKTDKVTA 191
+ I V++ NK D +
Sbjct: 113 --RTISVILFLNKQDLLAE 129
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 11/143 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK+ +V GL +GKT L + L+D Q T +
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH---------PTSEELTIAGMTFTT 61
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
G ++ + A + + + E L ++T+ T+ +P+LI
Sbjct: 62 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI--ANVPILI 119
Query: 182 CCNKTDKVTAHTKEFIRKQMEKE 204
NK D+ A ++E +R+
Sbjct: 120 LGNKIDRPEAISEERLREMFGLY 142
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
++ GL +GKT L + L++ + +++P T+ SE D+ GH
Sbjct: 3 LLFLGLDNAGKTTLLHMLKN-----DRLATLQP---TWHPTSEELAIGNIKFTTFDLGGH 54
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
+ R ++ P+ GIVF+VDA + A E K +P +I NK
Sbjct: 55 IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAEL---KDVPFVILGNKI 111
Query: 187 DKVTAHTKEFIRKQMEKE 204
D A ++ +R +
Sbjct: 112 DAPNAVSEAELRSALGLL 129
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 37.7 bits (86), Expect = 4e-04
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 11/138 (7%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL +GKT + Y+L+ G T + E+ + K + DV G
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIP--------TIGFNVETVEYKNISFTVWDVGGQ 54
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
++RP + G++FVVD+ + A E + + + + +L+ NK
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML---AEDELRDAVLLVFANKQ 111
Query: 187 DKVTAHTKEFIRKQMEKE 204
D A I ++
Sbjct: 112 DLPNAMNAAEITDKLGLH 129
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 37.7 bits (86), Expect = 5e-04
Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 11/136 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+++ GL +GKT + + + T + ++ + + +++ DV G
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISP--------TLGFNIKTLEHRGFKLNIWDVGGQ 56
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
LR + G+++VVD+ + +LI NK
Sbjct: 57 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIFANKQ 113
Query: 187 DKVTAHTKEFIRKQME 202
D A + I++ +E
Sbjct: 114 DLPGALSCNAIQEALE 129
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 6e-04
Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 7/121 (5%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+V+ G G GK+ L Q G+ + +P + F + ++D G
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGT----FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
+ D ++ G + V + I +K+PV++ NK
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKV 118
Query: 187 D 187
D
Sbjct: 119 D 119
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 7e-04
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
++ G +G GK+ L Q D ++ +++ GK + + D G
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVN---IDGKQIKLQIWDTAGQ 62
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
R + AAG + V D + + + +L D +S+ + +++ NK+
Sbjct: 63 ESFRSITRSYYRGAAGALLVYD-ITRRETFNHLTSWLEDARQHSS---SNMVIMLIGNKS 118
Query: 187 D 187
D
Sbjct: 119 D 119
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.001
Identities = 19/139 (13%), Positives = 37/139 (26%), Gaps = 3/139 (2%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
++L G G GK+ L + F+ G + + D G
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDT---QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 65
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
R R F + + + + ++ I + P +I NK
Sbjct: 66 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 125
Query: 187 DKVTAHTKEFIRKQMEKEI 205
D + ++
Sbjct: 126 DISERQVSTEEAQAWCRDN 144
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.001
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G GKT L + + + +T++ + T + GK + + D G
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLT---KKLNIGGKRVNLAIWDTAGQ 62
Query: 127 SRLRPKLDEFLPQAAGIVFVVD 148
R + + G + V D
Sbjct: 63 ERFHALGPIYYRDSNGAILVYD 84
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.4 bits (83), Expect = 0.002
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I+L G SGK+ Q+R T +H + K P +VDV G
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG----------IHEYDFEIKNVPFKMVDVGGQ 54
Query: 127 SRLRPKLDEFLPQAAGIVFVV 147
R + E I+F+V
Sbjct: 55 RSERKRWFECFDSVTSILFLV 75
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 35.8 bits (81), Expect = 0.002
Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 11/162 (6%)
Query: 66 TIVLAGLSGSGKTVLFYQLRD-----GSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHL 120
TI+ AG S GK+ L Y+L G T +E + G + +
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61
Query: 121 VDVPGHSRLRPKLDEFLPQAAGIVFVV----DALEFLPNCSAASEYLYDILTNSTVVKKK 176
E + + +V A E + E D+ + +
Sbjct: 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121
Query: 177 IPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVS 216
IP ++ NK DK+ F+ ++ E + ++ +S
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPIS 163
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.4 bits (80), Expect = 0.003
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 8/138 (5%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ K
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 65
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
LR + F + + + + V + IP+++C NK
Sbjct: 66 GGLRDGYYIQ--------AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 117
Query: 187 DKVTAHTKEFIRKQMEKE 204
D K K+
Sbjct: 118 DIKDRKVKAKSIVFHRKK 135
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 35.0 bits (79), Expect = 0.004
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 11/149 (7%)
Query: 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKI 115
+ + +++ GL +GKT + YQ + T + E
Sbjct: 7 IWRLFNHQEHKVIIVGLDNAGKTTILYQFSMN--------EVVHTSPTIGSNVEEIVINN 58
Query: 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKK 175
+ D+ G LR + + ++ VVD + + +
Sbjct: 59 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD---STDRERISVTREELYKMLAHEDLR 115
Query: 176 KIPVLICCNKTDKVTAHTKEFIRKQMEKE 204
K +LI NK D T I + ++
Sbjct: 116 KAGLLIFANKQDVKECMTVAEISQFLKLT 144
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 267 | |||
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.96 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.96 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.96 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.95 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.95 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.95 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.95 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.95 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.95 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.95 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.95 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.95 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.94 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.94 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.94 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.94 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.94 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.94 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.93 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.93 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.93 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.93 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.93 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.92 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.92 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.91 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.91 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.9 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.89 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.89 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.88 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.88 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.88 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.87 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.86 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.86 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.86 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.85 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.85 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.85 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.84 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.84 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.84 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.83 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.83 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.81 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.79 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.76 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.75 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.75 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.74 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.73 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.72 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.72 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.7 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.7 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.65 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.64 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.59 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.52 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.5 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.12 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.05 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.97 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.93 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.9 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.88 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.58 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.3 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.25 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.24 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.23 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.2 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.19 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.07 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.99 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.96 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.91 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.64 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.57 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.47 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.4 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.37 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.35 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.32 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.16 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.15 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.12 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.11 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.07 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.05 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.04 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.01 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.98 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.96 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.95 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.95 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.95 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.92 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.92 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.87 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 96.87 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.86 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.84 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.83 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.75 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.74 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.73 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.71 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 96.7 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.7 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.69 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 96.68 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.66 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.65 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.65 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.65 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.65 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.63 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 96.63 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 96.61 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.61 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.6 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.57 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.57 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.56 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 96.56 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 96.53 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 96.53 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.51 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.51 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.46 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.45 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.43 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.37 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 96.36 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 96.35 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.33 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.33 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.32 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.31 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.3 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.28 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.27 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.25 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.25 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.23 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.21 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.14 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.14 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.11 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.08 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.08 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.08 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.08 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.06 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.05 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.01 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.0 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.98 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.98 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.92 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.88 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.87 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.76 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.66 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.62 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 95.59 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.53 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.49 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.41 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.22 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.21 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 95.19 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.19 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.14 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.11 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.1 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.08 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.06 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.98 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.92 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.71 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.46 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.43 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.43 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.39 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.35 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.25 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.11 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.03 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.96 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.95 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 93.9 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.89 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.84 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 93.78 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.75 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.74 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 93.6 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.59 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.56 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.44 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.38 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.25 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.2 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.15 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.07 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.0 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.86 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 92.62 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.57 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.33 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.31 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 92.25 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.83 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.82 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.77 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 91.55 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.3 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 91.13 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.88 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.67 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 90.63 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.58 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 89.8 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.56 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 86.74 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.33 | |
| d1xzpa1 | 173 | TrmE connector domain {Thermotoga maritima [TaxId: | 85.25 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 84.69 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 84.45 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 84.39 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.16 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 82.48 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 82.4 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 80.51 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 80.48 |
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.6e-30 Score=197.06 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=121.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||+++++++.+.....+++. .++.......++..+.+.+|||+|+..+..++..+++++|+++
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~---~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 80 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG---VEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 80 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-----CCEEEETT---EEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccccccee---ccccccccccccccccccccccccccccceecchhcccccchh
Confidence 6999999999999999999999887665555442 2344444555777789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+..+.+.. .++|+++|+||+|+......++...
T Consensus 81 lv~d~~~~-~Sf~~~~~~~~~~~~~~----~~~piilvgnK~Dl~~~~~~~~~~~------------------------- 130 (170)
T d1i2ma_ 81 IMFDVTSR-VTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIV------------------------- 130 (170)
T ss_dssp EEEETTSG-GGGTTHHHHHHHHHHHH----CSCCEEEEEECCCCSCSCCTTTSHH-------------------------
T ss_pred hccccccc-cccchhHHHHHHHhhcc----CCCceeeecchhhhhhhhhhhHHHH-------------------------
Confidence 99999997 78999999998887642 6799999999999976543321110
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.. ..+++|+++||++|+ +++++++|.+.+
T Consensus 131 ----------~~~-~~~~~~~e~Sak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 131 ----------FHR-KKNLQYYDISAKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp ----------HHS-SCSSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred ----------HHH-HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 345689999999999 999999998764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.96 E-value=4.5e-29 Score=190.83 Aligned_cols=162 Identities=22% Similarity=0.306 Sum_probs=126.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
..||+++|++|||||||+++|.++.+.....+|... .... ++...+.+++||+||+..+...+..++..+|++
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~-----~~~~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 74 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF-----NMRK--ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 74 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSE-----EEEE--EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCccccccee-----eeee--eeeeeEEEEEeeccccccccccccccccccchh
Confidence 469999999999999999999998875544433321 1111 123347899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|||+++. .++.....++..++.... ..++|+++|+||+|+.......++.+.+.. .
T Consensus 75 i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~-------~------------ 132 (164)
T d1zd9a1 75 VYMVDAADQ-EKIEASKNELHNLLDKPQ--LQGIPVLVLGNKRDLPGALDEKELIEKMNL-------S------------ 132 (164)
T ss_dssp EEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTG-------G------------
T ss_pred hcccccccc-cccchhhhhhhhhhhhhc--ccCCcEEEEEeccccchhhhHHHHHHHHHH-------H------------
Confidence 999999986 778999999988887643 368999999999999877666554332211 0
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.. ..++.++++||++|+ ++++++||.+++|
T Consensus 133 -----------~~~-~~~~~~~e~Sa~~g~gv~e~~~~l~~~~k 164 (164)
T d1zd9a1 133 -----------AIQ-DREICCYSISCKEKDNIDITLQWLIQHSK 164 (164)
T ss_dssp -----------GCC-SSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred -----------HHH-hCCCEEEEEeCcCCcCHHHHHHHHHHccC
Confidence 000 235689999999999 9999999999876
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.3e-29 Score=190.09 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=110.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.+..+... .++..........+++..+.+.+|||||+++++..+..+++.+|++|
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~i 76 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPE-----AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYV 76 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC--------------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCc-----CCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhc
Confidence 6899999999999999999998764321 12222222333445777889999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|||+++. .+++.+..|+.++..... ...+|+++|+||+|+...... .+..+ +.+
T Consensus 77 lv~d~t~~-~s~~~~~~~~~~i~~~~~--~~~~piilvgnK~Dl~~~~~v~~~~~~~-~~~------------------- 133 (168)
T d2gjsa1 77 IVYSVTDK-GSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGRA-CAV------------------- 133 (168)
T ss_dssp EEEETTCH-HHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCGGGCCSCHHHHHH-HHH-------------------
T ss_pred eecccccc-ccccccccccchhhcccc--cccceEEEeecccchhhhcchhHHHHHH-HHH-------------------
Confidence 99999997 789999999888876432 367899999999999765432 22111 111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|++|||++|. +++++++|.+.+
T Consensus 134 ----------------~~~~~~~e~Sak~~~~v~~~f~~l~~~i 161 (168)
T d2gjsa1 134 ----------------VFDCKFIETSAALHHNVQALFEGVVRQI 161 (168)
T ss_dssp ----------------HHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------------hcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 223579999999999 999999987654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.7e-28 Score=187.58 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=125.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|||||||+++|+++++.....++. +..........++..+.+.+||++|++++...+..+++.+|+++
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 77 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI---GIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAV 77 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCC---SEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccce---eeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEE
Confidence 589999999999999999999988755444333 22333344445677789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|||.++. .++..+..|+.++.... ..+.|+++|+||+|+...... ++..+..+
T Consensus 78 lv~d~~~~-~s~~~i~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-------------------- 133 (164)
T d1yzqa1 78 VVYDITNV-NSFQQTTKWIDDVRTER---GSDVIIMLVGNKTDLADKRQVSIEEGERKAK-------------------- 133 (164)
T ss_dssp EEEETTCH-HHHHTHHHHHHHHHHHH---TTSSEEEEEEECTTCGGGCCSCHHHHHHHHH--------------------
T ss_pred Eeeccccc-cchhhhHhhHHHHHHhc---CCCceEEEEecccchhhhhhhhHHHHHHHHH--------------------
Confidence 99999997 78899999998877643 367999999999999754332 22221111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.|++|||++|+ |++++++|.+.++
T Consensus 134 ----------------~~~~~~~e~SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 134 ----------------ELNVMFIETSAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp ----------------HTTCEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred ----------------HcCCEEEEecCCCCcCHHHHHHHHHHhhC
Confidence 234579999999999 9999999998875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.96 E-value=5.9e-29 Score=191.79 Aligned_cols=164 Identities=23% Similarity=0.362 Sum_probs=125.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+..||+++|++|||||||++++.++.+.. . . ++.. ...... ....+.+.+||+||+..++..+..+++.+
T Consensus 9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~---~-~t~~-~~~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 80 (173)
T d1e0sa_ 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-T---I-PTVG-FNVETV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGT 80 (173)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHTTCCCCEE-E---E-EETT-EEEEEE--EETTEEEEEEEESCCGGGHHHHGGGTTTC
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCC-c---c-ceee-eeEEEe--eccceeeEEecCCCcchhhhHHHhhhccc
Confidence 4677899999999999999999999876422 1 1 1111 111111 23347899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .++.....|+...+.... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 81 ~~ii~v~D~s~~-~~~~~~~~~l~~~~~~~~--~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~--~-------------- 141 (173)
T d1e0sa_ 81 QGLIFVVDCADR-DRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEIQEKLGL--T-------------- 141 (173)
T ss_dssp CEEEEEEETTCG-GGHHHHHHHHHHHHTSGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG--G--------------
T ss_pred ceEEEEEecccc-hhHHHHHHHHHHHhhhcc--cccceeeeeeecccccccccHHHHHHHHHH--H--------------
Confidence 999999999986 778889899988877543 368999999999999877666554433210 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. ...++.+++|||++|+ |+++++||.+++|
T Consensus 142 --------------~~-~~~~~~~~e~SA~tg~gv~e~~~~l~~~~k 173 (173)
T d1e0sa_ 142 --------------RI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173 (173)
T ss_dssp --------------GC-CSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred --------------HH-HhCCCEEEEeeCCCCcCHHHHHHHHHHhcC
Confidence 00 0235679999999999 9999999999886
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.96 E-value=9.7e-29 Score=190.97 Aligned_cols=163 Identities=23% Similarity=0.370 Sum_probs=124.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+..||+++|++|||||||+|+|.++.+... . ++.+ +.... +....+.+.+||++|++.++..+..+++.+
T Consensus 13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~----~~~~-~~~~~--i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 84 (176)
T d1fzqa_ 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-T----PTQG-FNIKS--VQSQGFKLNVWDIGGQRKIRPYWRSYFENT 84 (176)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-E----EETT-EEEEE--EEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-e----eeee-eeEEE--eccCCeeEeEeeccccccchhHHHHHhhcc
Confidence 35678999999999999999999999876321 1 1111 11222 223347899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|||+++. .++.....++.++..... ..++|+++|+||+|+........+.+.+...
T Consensus 85 ~~ii~v~d~~d~-~s~~~~~~~~~~~~~~~~--~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~---------------- 145 (176)
T d1fzqa_ 85 DILIYVIDSADR-KRFEETGQELTELLEEEK--LSCVPVLIFANKQDLLTAAPASEIAEGLNLH---------------- 145 (176)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHTTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTGG----------------
T ss_pred ceeEEeeccccc-cchhhhhhhhhhhhhhhc--cCCCeEEEEEEeccccccccHHHHHHHHHHH----------------
Confidence 999999999987 788888888888776543 3678999999999998776665444322210
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+. ....+.+++|||++|+ ++++++||.+.+
T Consensus 146 --------------~~-~~~~~~~~~~SA~tg~gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 146 --------------TI-RDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (176)
T ss_dssp --------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred --------------HH-HhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 00 0245689999999999 999999999864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-28 Score=190.19 Aligned_cols=161 Identities=16% Similarity=0.228 Sum_probs=126.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+||+++|++|||||||+++++++.+.... .++..........+++..+.+.+|||+|+.++...+..+++.+|
T Consensus 4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 79 (173)
T d2fn4a1 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDY----DPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 79 (173)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCeEEEEEECCCCcCHHHHHHHHHhCCCCccc----ccccccceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence 45679999999999999999999998865433 33334444445556777889999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|||+++. .++..+..|+..+.+... ..+.|+++|+||+|+...+. .++..+..+
T Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----------------- 139 (173)
T d2fn4a1 80 GFLLVFAINDR-QSFNEVGKLFTQILRVKD--RDDFPVVLVGNKADLESQRQVPRSEASAFGA----------------- 139 (173)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHT--SSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----------------
T ss_pred eeeeecccccc-cccchhhhhhHHHHHHhc--cCCCceEEEEEeechhhccccchhhhhHHHH-----------------
Confidence 99999999987 789999999888776432 26789999999999875432 222211111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|++|||++|+ |++++++|.+.+
T Consensus 140 -------------------~~~~~~~e~Sak~g~gv~e~f~~l~~~i 167 (173)
T d2fn4a1 140 -------------------SHHVAYFEASAKLRLNVDEAFEQLVRAV 167 (173)
T ss_dssp -------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------hcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 224579999999999 999999998765
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.95 E-value=7.2e-29 Score=192.86 Aligned_cols=167 Identities=24% Similarity=0.363 Sum_probs=122.6
Q ss_pred HhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhh
Q 024474 58 VFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFL 137 (267)
Q Consensus 58 ~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 137 (267)
.+...+..||+++|++|||||||+++|.++.+.. ..++..... . ......+.+.+||+||++.++..+..++
T Consensus 11 l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-----~~~t~~~~~-~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (182)
T d1moza_ 11 LWGSNKELRILILGLDGAGKTTILYRLQIGEVVT-----TKPTIGFNV-E--TLSYKNLKLNVWDLGGQTSIRPYWRCYY 82 (182)
T ss_dssp GTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-----ECSSTTCCE-E--EEEETTEEEEEEEEC----CCTTGGGTT
T ss_pred HhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-----cccccceEE-E--EEeeCCEEEEEEecccccccchhHHhhh
Confidence 4457788999999999999999999998876422 222221111 1 1123347899999999999999999999
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
+.+|++++|+|+++. .++.....|+.+.+.... ..+.|+++|+||+|+....+..++.+.+..
T Consensus 83 ~~~~~ii~v~d~~d~-~s~~~~~~~l~~~~~~~~--~~~~piliv~NK~Dl~~~~~~~~i~~~~~~-------------- 145 (182)
T d1moza_ 83 ADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEE--LQDAALLVFANKQDQPGALSASEVSKELNL-------------- 145 (182)
T ss_dssp TTEEEEEEEEETTCT-TTHHHHHHHHHHHTTSST--TSSCEEEEEEECTTSTTCCCHHHHHHHTTT--------------
T ss_pred ccceeEEEEeeeccc-ccchhHHHHHHHHHHhhc--cCCcceEEEEEeeccccccCHHHHHHHHHH--------------
Confidence 999999999999987 678888888888777543 367999999999999876666554432210
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
. + -...++.|++|||++|+ ++++++||.+.++
T Consensus 146 ---------~-------~-~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~ 178 (182)
T d1moza_ 146 ---------V-------E-LKDRSWSIVASSAIKGEGITEGLDWLIDVIK 178 (182)
T ss_dssp ---------T-------T-CCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred ---------H-------H-HhhCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 0 00345789999999999 9999999998763
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3e-28 Score=186.75 Aligned_cols=162 Identities=14% Similarity=0.194 Sum_probs=127.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.+||+++|.+|||||||+++++.+.+.....++. ..........++..+.+.+||++|+..+...+..+++.+|+
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~----~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 77 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI----EDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQG 77 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCS----EEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcc----ccccceeEEeeeeEEEeccccccCcccccccccccccccce
Confidence 45799999999999999999999998765544333 22233334457777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|||+++. .+++.+..|+..+.+... ..+.|+++|+||+|+...... ++..+..++
T Consensus 78 ~ilv~d~~~~-~sf~~~~~~~~~~~~~~~--~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~----------------- 137 (167)
T d1c1ya_ 78 FALVYSITAQ-STFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----------------- 137 (167)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHHC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------
T ss_pred eEEeeeccch-hhhHhHHHHHHHHHHhcC--CCCCeEEEEEEecCcccccccchhHHHHHHHH-----------------
Confidence 9999999997 789999999988876432 267899999999999765432 222111111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.|++|||++|+ +++++++|.+.+.
T Consensus 138 ------------------~~~~~~~e~Sak~g~gv~e~F~~l~~~i~ 166 (167)
T d1c1ya_ 138 ------------------WCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp ------------------TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred ------------------hCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence 235689999999999 9999999987654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.5e-28 Score=189.14 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=122.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|||||||+++|+++.+.....++. +.++......+++..+.+.+|||||++++...+..+++++|++
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~ 81 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI---GVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 81 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCC---SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccc---cceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence 3699999999999999999999988755443333 2334444445567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|.++. .++.....|+..+.+.. ....|+++|+||+|+..... .++..+ +.+
T Consensus 82 i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~~~ilvgnK~D~~~~~~v~~~~~~~-~~~------------------ 138 (171)
T d2ew1a1 82 ILTYDITCE-ESFRCLPEWLREIEQYA---SNKVITVLVGNKIDLAERREVSQQRAEE-FSE------------------ 138 (171)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCSSCHHHHHH-HHH------------------
T ss_pred EEeeecccc-hhhhhhhhhhhhhcccc---cccccEEEEEeecccccccchhhhHHHH-HHH------------------
Confidence 999999987 67888888888776642 36789999999999875443 222221 111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..++.|++|||++|+ |++++++|...
T Consensus 139 -----------------~~~~~~~~~SAktg~gV~e~f~~l~~~ 165 (171)
T d2ew1a1 139 -----------------AQDMYYLETSAKESDNVEKLFLDLACR 165 (171)
T ss_dssp -----------------HHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----------------hCCCEEEEEccCCCCCHHHHHHHHHHH
Confidence 123468999999999 99998887754
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.1e-28 Score=188.71 Aligned_cols=157 Identities=16% Similarity=0.197 Sum_probs=122.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|||||||+++|.++.+.....++... +........++..+.+.+|||+|+.++......+++.+|+++
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~---~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 79 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV---DFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 79 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSS---SEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccccccccc---ccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEE
Confidence 58999999999999999999988776554444432 233333444667789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|||+++. .+++.+..|+.++.+.. .++|+++|+||+|+...+. .++..+.. +
T Consensus 80 ~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~~iilVgnK~Dl~~~~~v~~~~~~~~~----~---------------- 134 (164)
T d1z2aa1 80 LVFSTTDR-ESFEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGLA----K---------------- 134 (164)
T ss_dssp EEEETTCH-HHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHHH----H----------------
T ss_pred EEEeccch-hhhhhcccccccccccC----CCceEEEeeccCCcccceeeeehhhHHHH----H----------------
Confidence 99999997 78888999988887642 6789999999999976543 22222111 1
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|+++||++|. +++++++|.+++
T Consensus 135 ----------------~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 135 ----------------RLKLRFYRTSVKEDLNVSEVFKYLAEKH 162 (164)
T ss_dssp ----------------HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ----------------HcCCEEEEeccCCCcCHHHHHHHHHHHH
Confidence 223579999999999 999999997753
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=2.6e-28 Score=187.49 Aligned_cols=159 Identities=22% Similarity=0.265 Sum_probs=121.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|||||||+++|.++.+.....++. +.+.........+..+.+++|||||++++..++..+++.+|++
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ 81 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV---GIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCC---SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCccccccc---ccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 4689999999999999999999887654433332 2233333444456668899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
|+|||+++. .++.....|+..+.... ....|+++|+||+|+..... .++..+ +. +
T Consensus 82 ilv~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~v~~~~~~~-~~---~--------------- 138 (169)
T d3raba_ 82 ILMYDITNE-ESFNAVQDWSTQIKTYS---WDNAQVLLVGNKCDMEDERVVSSERGRQ-LA---D--------------- 138 (169)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHC---CSCCEEEEEEECTTCGGGCCSCHHHHHH-HH---H---------------
T ss_pred EEEEECccc-hhhhhhhhhhhhhhccc---CCcceEEEEEeecccccccccchhhhHH-HH---H---------------
Confidence 999999987 67888877776665432 36789999999999876543 222221 11 1
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|++|||++|+ +++++++|.+.+
T Consensus 139 -----------------~~~~~~~e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 139 -----------------HLGFEFFEASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp -----------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------HcCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence 123479999999999 999999998754
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.95 E-value=2.3e-28 Score=187.55 Aligned_cols=161 Identities=17% Similarity=0.266 Sum_probs=122.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.+||+++|++|||||||+++++.+.+...+.++ ..........+++..+.+.+||++|+.++...+..+++.+|+
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T----~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~ 78 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT----KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 78 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTT----CCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCc----cccccccccccccccccccccccccccchhhhhhhcccccce
Confidence 3469999999999999999999988875544333 222222334457778899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|||.++. .+++.+..|+.++.+... ..+.|+++|+||+|+...+. .++..+.. .
T Consensus 79 ~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiivgnK~Dl~~~~~v~~~~~~~~~----~-------------- 137 (168)
T d1u8za_ 79 FLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRA----D-------------- 137 (168)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHH----H--------------
T ss_pred eEEEeeccch-hhhhhHHHHHHHHHHhhC--CCCCcEEEEeccccccccccccHHHHHHHH----H--------------
Confidence 9999999997 789999999988876432 36789999999999876543 23222211 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.|++|||++|+ +++++++|.+.++
T Consensus 138 ------------------~~~~~~~e~Sak~g~gv~e~f~~l~~~i~ 166 (168)
T d1u8za_ 138 ------------------QWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp ------------------HHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 224579999999999 9999999987653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=5e-28 Score=185.47 Aligned_cols=161 Identities=16% Similarity=0.236 Sum_probs=124.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.+||+++|.+|||||||+++|..+.+.....++.. ..........+.....+.+|||+|++++...+..+++.+|+
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~---~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 79 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG---ASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 79 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS---EEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccc---cccccccccccccccceeeeecCCchhhhHHHHHHHhhccc
Confidence 457999999999999999999999887655444332 22222333335556788999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|||+++. +++..+..|+..+.... ..+.|+++|+||+|+...+. .++..+..+
T Consensus 80 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~------------------ 137 (167)
T d1z0ja1 80 AIIVYDITKE-ETFSTLKNWVRELRQHG---PPSIVVAIAGNKCDLTDVREVMERDAKDYAD------------------ 137 (167)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTSEEEEEEECTTCGGGCCSCHHHHHHHHH------------------
T ss_pred eEEEeeechh-hhhhhHHHhhhhhhhcc---CCcceEEEecccchhccccchhHHHHHHHHH------------------
Confidence 9999999987 78999998887776643 37889999999999975533 222221111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.|++|||++|. |++++.+|.+.+|
T Consensus 138 ------------------~~~~~~~e~SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 138 ------------------SIHAIFVETSAKNAININELFIEISRRIP 166 (167)
T ss_dssp ------------------HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ------------------HcCCEEEEEecCCCCCHHHHHHHHHHhCC
Confidence 224579999999999 9999999999886
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.2e-28 Score=188.31 Aligned_cols=171 Identities=15% Similarity=0.116 Sum_probs=122.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|||||||++++..+.+.....++ ..........+++..+.+.+|||+|++.+...+..+++++|++|
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t----~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 78 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPT----VFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL 78 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC----SEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCc----eeeeccccccccccceeeeccccCccchhcccchhhcccchhhh
Confidence 58999999999999999999998876554433 33333334445677789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++....|+...+... ..+.|+++|+||+|+.......+...... ...++..+..
T Consensus 79 lv~d~~~~-~Sf~~~~~~~~~~~~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~---------~~~v~~~e~~--- 142 (177)
T d1kmqa_ 79 MCFSIDSP-DSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMK---------QEPVKPEEGR--- 142 (177)
T ss_dssp EEEETTCH-HHHHHHHHTHHHHHHHH---STTSCEEEEEECGGGTTCHHHHHHHHHTT---------CCCCCHHHHH---
T ss_pred hhcccchh-HHHHHHHHHHHHHHHHh---CCCCceEEeeecccccchhhHHHHHHHhh---------cccccHHHHH---
Confidence 99999987 77888887777766643 36799999999999975432211100000 0000000000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.+....+.+.|+||||++|+ |+++++.+.+.
T Consensus 143 ---------~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~ 174 (177)
T d1kmqa_ 143 ---------DMANRIGAFGYMECSAKTKDGVREVFEMATRA 174 (177)
T ss_dssp ---------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ---------HHHHHcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 01111344689999999999 99999988764
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.95 E-value=1.4e-28 Score=188.21 Aligned_cols=161 Identities=18% Similarity=0.318 Sum_probs=122.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.+||+++|++|||||||+++|.+..+. +..|+.+.. .. .+..+.+.+.+|||||++.++..+..+++.+++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-----~~~~t~~~~-~~--~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 72 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFN-IK--TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDG 72 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCS-----SCCCCSSEE-EE--EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSE
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCC-----cccceEeee-ee--eccccccceeeeecCcchhhhhHHHhhhhhhhc
Confidence 3569999999999999999999887642 222322211 11 123344789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .++.....++...+.... ..+.|+++|+||+|+.......+..+.+..
T Consensus 73 ~i~v~d~~d~-~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------------------- 130 (165)
T d1ksha_ 73 LIWVVDSADR-QRMQDCQRELQSLLVEER--LAGATLLIFANKQDLPGALSCNAIQEALEL------------------- 130 (165)
T ss_dssp EEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG-------------------
T ss_pred ceeeeecccc-hhHHHHHHhhhhhhhhcc--cCCCceEEEEeccccccccCHHHHHHHHHh-------------------
Confidence 9999999986 678888888877776543 367999999999999877766554332210
Q ss_pred cccCCCCCCCcccccc-cceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+ ..++.|++|||++|+ ++++++||.+++.
T Consensus 131 -------------~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~ 163 (165)
T d1ksha_ 131 -------------DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163 (165)
T ss_dssp -------------GGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------------hhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000 235689999999999 9999999988763
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.7e-28 Score=185.44 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=123.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|+++
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i 81 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI---GVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 81 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSC---CCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccc---cccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence 699999999999999999999988755443322 33344445555777789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+++. .++.....|+..+.... ....|+++|+||+|+...... ++..+..+
T Consensus 82 lv~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-------------------- 137 (166)
T d1z0fa1 82 MVYDITRR-STYNHLSSWLTDARNLT---NPNTVIILIGNKADLEAQRDVTYEEAKQFAE-------------------- 137 (166)
T ss_dssp EEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH--------------------
T ss_pred EEeccCch-HHHHHHHHHHHHHHhhc---cccceEEEEcccccchhhcccHHHHHHHHHH--------------------
Confidence 99999987 78888888887776542 367899999999998654432 22222111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|++|||++|+ +++++++|.+.+
T Consensus 138 ----------------~~~~~~~e~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 138 ----------------ENGLLFLEASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp ----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 223579999999999 999999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.6e-28 Score=185.65 Aligned_cols=162 Identities=16% Similarity=0.229 Sum_probs=125.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.+||+++|++|||||||+++++++.+..... ++..+.......+++..+.+.+||++|+..+......+++++|+
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~ 77 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYD----PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG 77 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccC----CceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccc
Confidence 56799999999999999999999988654433 33344444445557777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|||+++. .++..+..|+..+..... ..++|+++|+||+|+........ +.......
T Consensus 78 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~--~~~~~~~~---------------- 136 (167)
T d1kaoa_ 78 FILVYSLVNQ-QSFQDIKPMRDQIIRVKR--YEKVPVILVGNKVDLESEREVSS--SEGRALAE---------------- 136 (167)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHTT--TSCCCEEEEEECGGGGGGCCSCH--HHHHHHHH----------------
T ss_pred eeeeeeecch-hhhhhhhchhhhhhhhcc--CCCCCEEEEEEccchhhcccchH--HHHHHHHH----------------
Confidence 9999999997 789999999888776432 26789999999999876543211 11111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|++|||++|+ +++++++|.+.+
T Consensus 137 ----------------~~~~~~~e~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 137 ----------------EWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ----------------HHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ----------------HcCCeEEEECCCCCcCHHHHHHHHHHHH
Confidence 223468999999999 999999987754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.5e-28 Score=186.34 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=118.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|||||||++++.++.+.....++. ...........++..+.+.+||++|+.+++..+..+++++|+++
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 80 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL---GASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 80 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC---SCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccccccc---ccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeE
Confidence 699999999999999999999988766544443 23344445555677789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|||+++. .+++.+..|+..+.... ....|+++|+||+|+...+. .++..+..+
T Consensus 81 ~v~d~~~~-~Sf~~~~~~~~~~~~~~---~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~-------------------- 136 (167)
T d1z08a1 81 LVYDITDE-DSFQKVKNWVKELRKML---GNEICLCIVGNKIDLEKERHVSIQEAESYAE-------------------- 136 (167)
T ss_dssp EEEETTCH-HHHHHHHHHHHHHHHHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH--------------------
T ss_pred EEEeCCch-hHHHhhhhhhhhccccc---ccccceeeeccccccccccccchHHHHHHHH--------------------
Confidence 99999997 78999999887766542 26788999999999976543 232222111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|++|||++|. |++++++|.+.+
T Consensus 137 ----------------~~~~~~~e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 137 ----------------SVGAKHYHTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp ----------------HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ----------------HcCCeEEEEecCCCcCHHHHHHHHHHHH
Confidence 234579999999999 999999998764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.6e-28 Score=186.33 Aligned_cols=161 Identities=14% Similarity=0.168 Sum_probs=122.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|.+|||||||+++++++.+...+.++ ..........+++..+.+.+|||+|.+.+......+++.+|++
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T----~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ 77 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT----VEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAF 77 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCC----SCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcc----eeeccccceeeccccceeccccccccccccccccccccceeEE
Confidence 579999999999999999999998875544433 3333333445577778899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|||+++. +++..+..|+..+.+... ...++|+++|+||+|+...+.. ++..+ +. .
T Consensus 78 ilv~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~piilVgnK~Dl~~~~~v~~~e~~~-~~---~--------------- 136 (171)
T d2erxa1 78 ILVYSITSR-QSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEA-LA---R--------------- 136 (171)
T ss_dssp EEEEETTCH-HHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHH-HH---H---------------
T ss_pred EEEeecccc-cchhcccchhhhhhhhhc-cCCCCcEEEEeecccccccccccHHHHHH-HH---H---------------
Confidence 999999987 788888888877765321 1367899999999999765432 22221 11 1
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.|++|||++|+ |+++++.|.+.++
T Consensus 137 -----------------~~~~~~~e~Sak~~~~v~e~f~~l~~~~~ 165 (171)
T d2erxa1 137 -----------------TWKCAFMETSAKLNHNVKELFQELLNLEK 165 (171)
T ss_dssp -----------------HHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred -----------------HcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 223579999999999 9999999887653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8e-28 Score=185.01 Aligned_cols=160 Identities=16% Similarity=0.227 Sum_probs=122.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.+||+++|.+|||||||+++++++.+.... .|+..........+++..+.+.+||++|..++......+++.+|+
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 79 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDY----DPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEG 79 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSC----CTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCccc----Ccccccceeeeeeecccccccccccccccccccccccccccccce
Confidence 4579999999999999999999998765443 333444555555567788899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|.++. .++..+..|+.++++... ....|+++|+||+|+..... .++..+..+
T Consensus 80 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~------------------ 138 (171)
T d2erya1 80 FLLVFSVTDR-GSFEEIYKFQRQILRVKD--RDEFPMILIGNKADLDHQRQVTQEEGQQLAR------------------ 138 (171)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHHT--SSCCSEEEEEECTTCTTSCSSCHHHHHHHHH------------------
T ss_pred EEEeeccccc-cchhhHHHHhHHHHhhcc--cCCCCEEEEEeccchhhhccchHHHHHHHHH------------------
Confidence 9999999997 789999999888776532 26789999999999976532 332222111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|++|||++|. |++++++|.+.+
T Consensus 139 ------------------~~~~~~~e~Sak~~~~i~e~f~~l~~~i 166 (171)
T d2erya1 139 ------------------QLKVTYMEASAKIRMNVDQAFHELVRVI 166 (171)
T ss_dssp ------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEcCCCCcCHHHHHHHHHHHH
Confidence 224579999999999 999999987754
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.5e-28 Score=187.26 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=122.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|.+|||||||+++|+.+.+.....++. ...........+..+.+.+|||+|++.+...+..+++++|
T Consensus 7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti----~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~ 82 (185)
T d2atxa1 7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV----FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 82 (185)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSS----CCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCce----eeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccc
Confidence 345799999999999999999999988765544433 3333444445677789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|||+++. ++++....|+...++.. ..++|+++|+||+|+.............. ...++.++..
T Consensus 83 ~~ilv~d~t~~-~Sf~~~~~~~~~~~~~~---~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~---------~r~v~~~~~~ 149 (185)
T d2atxa1 83 VFLICFSVVNP-ASFQNVKEEWVPELKEY---APNVPFLLIGTQIDLRDDPKTLARLNDMK---------EKPICVEQGQ 149 (185)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHH---STTCCEEEEEECTTSTTCHHHHHHHTTTT---------CCCCCHHHHH
T ss_pred eeeeccccchH-HHHHHHHHHHHHHHHhc---CCCCCeeEeeeccccccchhhhhhhhhcc---------cccccHHHHH
Confidence 99999999997 77888777766666542 36899999999999975432211100000 0000000000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.+....+.+.|+||||++|+ |+++++.+.+.
T Consensus 150 ------------~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~ 181 (185)
T d2atxa1 150 ------------KLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181 (185)
T ss_dssp ------------HHHHHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ------------HHHHHcCCCEEEEecCCCCcCHHHHHHHHHHH
Confidence 01111234679999999999 99998877654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=9.8e-28 Score=184.35 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=125.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|||||||+++|+.+.+.....++.. ..+........+..+.+.+|||+|++++...+..+++++|+
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 81 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG---AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS---EEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc---cccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcce
Confidence 457999999999999999999999887665544432 22222333345666889999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|.++. .++.....|...+.+.. ..+.|+++|+||+|+...... ++..+ +. .
T Consensus 82 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~v~~e~~~~-~~---~-------------- 139 (170)
T d1r2qa_ 82 AIVVYDITNE-ESFARAKNWVKELQRQA---SPNIVIALSGNKADLANKRAVDFQEAQS-YA---D-------------- 139 (170)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHH-HH---H--------------
T ss_pred EEEEeccchh-hHHHHHHHHhhhhhhcc---CCCceEEeecccccccccccccHHHHHH-HH---H--------------
Confidence 9999999987 77888888888876643 368999999999998765432 22111 11 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+++|++|||++|+ |++++++|.+.++
T Consensus 140 ------------------~~~~~~~e~SAk~g~~V~e~f~~l~~~i~ 168 (170)
T d1r2qa_ 140 ------------------DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp ------------------HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred ------------------hcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 234579999999999 9999999988765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=7.4e-28 Score=184.91 Aligned_cols=160 Identities=13% Similarity=0.205 Sum_probs=125.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.+||+++|++|||||||+++++++.+.....+ +...........++..+.+.+||++|++.+...+..+++++|+
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 78 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDP----TIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 78 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCT----TCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCc----ceeeccccccccccccccccccccccccccccchhhhhhhccE
Confidence 468999999999999999999999876554333 2333333344457777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|||+++. .++..+..|+.++.+... ..+.|+++|+||+|+...+. .++..+..+
T Consensus 79 ~llv~d~~d~-~Sf~~~~~~~~~i~~~~~--~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~------------------ 137 (169)
T d1x1ra1 79 FLIVYSVTDK-ASFEHVDRFHQLILRVKD--RESFPMILVANKVDLMHLRKVTRDQGKEMAT------------------ 137 (169)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHHT--SSCCCEEEEEECTTCSTTCCSCHHHHHHHHH------------------
T ss_pred EEEecccccc-hhhhccchhhHHHHhhcc--ccCccEEEEecccchhhhceeehhhHHHHHH------------------
Confidence 9999999997 789999999988876532 36789999999999987643 233322211
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc--chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ |++++++|.+.+
T Consensus 138 ------------------~~~~~~~e~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 138 ------------------KYNIPYIETSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp ------------------HHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 223579999999986 999998887754
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.9e-28 Score=185.49 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=123.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.+||+++|++|||||||+++|+++.+.....++. .........+++..+.+.+|||+|...+..+...+++.+|+
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~----~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~ 78 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI----ENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 78 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSC----CEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCE
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcce----ecccceEEecCcEEEEeeecccccccccccccchhhhhhhh
Confidence 45799999999999999999999887755433332 22222334457778899999999999999989999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|||+++. .++..+..|+.++.+... ..++|+++|+||+|+...+. .++..+ +. +
T Consensus 79 ~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilvgnK~Dl~~~r~v~~~~~~~-~a---~-------------- 137 (167)
T d1xtqa1 79 YILVYSVTSI-KSFEVIKVIHGKLLDMVG--KVQIPIMLVGNKKDLHMERVISYEEGKA-LA---E-------------- 137 (167)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHHC--SSCCCEEEEEECTTCGGGCCSCHHHHHH-HH---H--------------
T ss_pred hhhhcccchh-hhhhhhhhhhhhhhhccc--ccccceeeeccccccccccchhHHHHHH-HH---H--------------
Confidence 9999999997 789999999888876432 36789999999999976543 222221 11 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|++|||++|+ ++++++.|...+
T Consensus 138 ------------------~~~~~~~e~Sak~~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 138 ------------------SWNAAFLESSAKENQTAVDVFRRIILEA 165 (167)
T ss_dssp ------------------HHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEecCCCCCHHHHHHHHHHHh
Confidence 223579999999999 999988876543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.2e-27 Score=184.67 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=122.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|||||||++++.++.+.....++. +.........+++..+.+.+|||+|++++...+..+++.+|++
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~ 80 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI---GVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 80 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCC---SCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccc---cceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence 3699999999999999999999987655443322 2233334444567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
|+|||.++. .++.....|+..+.... ..++|+++|+||+|+....... +......+
T Consensus 81 i~v~d~~~~-~S~~~~~~~~~~i~~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~------------------- 137 (175)
T d2f9la1 81 LLVYDIAKH-LTYENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTDEARAFAE------------------- 137 (175)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------------------
T ss_pred EEEEECCCc-ccchhHHHHHHHHHHhc---CCCCcEEEEEeeecccccccchHHHHHHhhc-------------------
Confidence 999999997 78999999998887653 3678999999999997543221 11111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..|++|||++|+ +++++++|.+.+
T Consensus 138 ----------------~~~~~~~e~Sa~~g~~i~e~f~~l~~~i 165 (175)
T d2f9la1 138 ----------------KNNLSFIETSALDSTNVEEAFKNILTEI 165 (175)
T ss_dssp ----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------ccCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 234579999999999 999998887653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7.6e-28 Score=184.25 Aligned_cols=160 Identities=14% Similarity=0.223 Sum_probs=122.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|||||||+++|+++.+.....++. ...........+..+.+.+||++|++.+...+..+++.++++
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 78 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 78 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCS----EEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCcc----ceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccc
Confidence 4799999999999999999999988755433332 222222233456678899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|.++. .+++....|+..+.+... ..++|+++|+||+|+.......+..+.+.+
T Consensus 79 iiv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------------------- 135 (166)
T d1ctqa_ 79 LCVFAINNT-KSFEDIHQYREQIKRVKD--SDDVPMVLVGNKCDLAARTVESRQAQDLAR-------------------- 135 (166)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHHT--CSSCCEEEEEECTTCSCCCSCHHHHHHHHH--------------------
T ss_pred ceeeccccc-ccHHHHHHHHHHHHHhcC--CCCCeEEEEecccccccccccHHHHHHHHH--------------------
Confidence 999999987 788999999888776432 257899999999999754432222121211
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|+++||++|+ |++++++|.+.+
T Consensus 136 ---------------~~~~~~~e~Sak~g~gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 136 ---------------SYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ---------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------------HhCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 223479999999999 999999998765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.2e-27 Score=184.46 Aligned_cols=159 Identities=21% Similarity=0.322 Sum_probs=121.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|||||||++++.++.+.....++...+ ........++....+.+|||||++++...+..+++.+|+++
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE---FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 82 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEE---EEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccc---eeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence 689999999999999999999888755544433222 22223333566678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|+|.++. .++..+..|+..+.... ..+.|+++|+||+|+....... .....+.+
T Consensus 83 ~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-------------------- 138 (174)
T d2bmea1 83 LVYDITSR-ETYNALTNWLTDARMLA---SQNIVIILCGNKKDLDADREVTFLEASRFAQ-------------------- 138 (174)
T ss_dssp EEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--------------------
T ss_pred EEEecccc-hhHHHHhhhhccccccc---CCceEEEEEEecccccchhchhhhHHHHHHH--------------------
Confidence 99999987 77888888888877643 3689999999999986544321 11111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|+++||++|+ ++++++||.+.+
T Consensus 139 ---------------~~~~~~~e~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 139 ---------------ENELMFLETSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp ---------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------------hCCCEEEEeeCCCCcCHHHHHHHHHHHH
Confidence 234579999999999 999999987653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.7e-27 Score=185.80 Aligned_cols=159 Identities=19% Similarity=0.323 Sum_probs=122.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+|+|++|||||||+++|+++.+.....++.. .++......+++..+.+.+|||||++++..++..+++.+|++
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~---~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~ 82 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG---VDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 82 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSC---CCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccc---eeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 36999999999999999999998887655544432 223333444566778999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
|+|||+++. .++.....+...+.+.. ..+.|+++|+||+|+...... ++......
T Consensus 83 i~v~d~t~~-~s~~~~~~~~~~~~~~~---~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~------------------- 139 (194)
T d2bcgy1 83 IIVYDVTDQ-ESFNGVKMWLQEIDRYA---TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD------------------- 139 (194)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-------------------
T ss_pred EEEEeCcch-hhhhhHhhhhhhhhhcc---cCCceEEEEEeccccccccchhHHHHhhhhh-------------------
Confidence 999999987 67888888777766542 378899999999999865432 21111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..|+++||++|. +++++++|.+.+
T Consensus 140 -----------------~~~~~~~e~SAk~g~gi~e~f~~l~~~i 167 (194)
T d2bcgy1 140 -----------------ANKMPFLETSALDSTNVEDAFLTMARQI 167 (194)
T ss_dssp -----------------HTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------ccCcceEEEecCcCccHHHHHHHHHHHH
Confidence 234568999999999 999999988764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.5e-26 Score=183.19 Aligned_cols=195 Identities=35% Similarity=0.576 Sum_probs=139.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-hhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-PKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~~~~~~d~i 143 (267)
.+|+++|++|||||||+|+|+++.+... .++.. .+... ....++..+.+.+||++|++.++ ..+..++..++++
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~---~~~~~-~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 75 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT---DSSAI-YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 75 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCS---CEEEE-EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-cCCee---EEEEE-EEEeeeeeeeeeeeeccccccccchhhhhhhhhcccc
Confidence 3799999999999999999999876432 22222 22211 12224455789999999998875 4567788999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc-c--cc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE-A--DV 220 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~--~~ 220 (267)
++|+|+++..........++.+++.........+|++||+||+|+..+.+.+++.+.+++.+............ . ..
T Consensus 76 i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~ 155 (207)
T d2fh5b1 76 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 155 (207)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred ceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhh
Confidence 99999998523355666677776654333346789999999999999999999999999888877665444221 1 12
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-------chhHHHHHHhh
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-------ISQVEQFIREQ 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-------i~~l~~~l~~~ 264 (267)
.....++..+..+.|+.+..++.++++|+++|+ ++++.+||.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 156 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hhhhhhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 233446677778889999999999999999885 78899999763
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-27 Score=183.16 Aligned_cols=159 Identities=18% Similarity=0.299 Sum_probs=121.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|||||||+++++++.+.....++. +.++......+++..+.+.+|||||++.++.++..+++++|+++
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~---~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI---GIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 79 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC----------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCcc---ceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 589999999999999999999988765554444 33444445556777789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||.++. ++++....|........ ....|+++++||.|+.......+..+.+.+
T Consensus 80 ~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~--------------------- 134 (166)
T d1g16a_ 80 LVYDITDE-RTFTNIKQWFKTVNEHA---NDEAQLLLVGNKSDMETRVVTADQGEALAK--------------------- 134 (166)
T ss_dssp EEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCTTCCSCHHHHHHHHH---------------------
T ss_pred EEEECCCc-cCHHHHHhhhhhhhccc---cCcceeeeecchhhhhhhhhhHHHHHHHHH---------------------
Confidence 99999997 67887777776666543 367889999999998766544332222221
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|++|||++|+ +++++++|.+.+
T Consensus 135 --------------~~~~~~~~~Sa~~~~~v~e~f~~l~~~i 162 (166)
T d1g16a_ 135 --------------ELGIPFIESSAKNDDNVNEIFFTLAKLI 162 (166)
T ss_dssp --------------HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------hcCCeEEEECCCCCCCHHHHHHHHHHHH
Confidence 224579999999999 999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.5e-27 Score=183.23 Aligned_cols=160 Identities=18% Similarity=0.241 Sum_probs=125.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
..||+++|++|||||||++++.++.+.....++. +..+.......++..+.+.+|||+|++++...+..+++.+|++
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~---~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ 79 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI---GAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAA 79 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS---SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccc---cceeeccccccccccccccccccCCchhHHHHHHHHHhccceE
Confidence 3599999999999999999999988765544333 2233334445567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-----HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-----KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
++|||.++. .++.....|+....... ....|+++|+||+|+..... .++..+.. +
T Consensus 80 ilv~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~----~------------ 139 (170)
T d1ek0a_ 80 LVVYDVTKP-QSFIKARHWVKELHEQA---SKDIIIALVGNKIDMLQEGGERKVAREEGEKLA----E------------ 139 (170)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH----H------------
T ss_pred EEEEeCCcc-cchhhhhhhhhhhcccc---ccccceeeeecccccccccchhhhhHHHHHHHH----H------------
Confidence 999999997 78889888887766643 36789999999999865422 22222111 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+++|++|||++|+ |++++++|.+.++
T Consensus 140 --------------------~~~~~~~e~Sak~g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 140 --------------------EKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp --------------------HHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred --------------------HcCCEEEEecCCCCcCHHHHHHHHHHHhc
Confidence 234579999999999 9999999998875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=5.8e-27 Score=180.74 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=109.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
-+||+++|++|||||||+++|+++.+.....++... ..........+.....+.+|||+|++++...+..+++.+|++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 79 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA--DFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 79 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCC--SCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCccccc--ceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceE
Confidence 368999999999999999999998876544433322 112222222344456789999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCCCC---HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHT---KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|||+++. .++..+..|+.++...... ...++|+++|+||+|+..... .++..+ +.+ .
T Consensus 80 ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~-~~~---~------------ 142 (175)
T d1ky3a_ 80 VLVYDVTNA-SSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE-LAK---S------------ 142 (175)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH-HHH---H------------
T ss_pred EEEeecccc-cccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHH-HHH---H------------
Confidence 999999987 6788888888887653221 235789999999999975432 222211 111 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.+...|++|||++|+ |++++++|.+.
T Consensus 143 -------------------~~~~~~~e~SA~~g~gv~e~f~~l~~~ 169 (175)
T d1ky3a_ 143 -------------------LGDIPLFLTSAKNAINVDTAFEEIARS 169 (175)
T ss_dssp -------------------TTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred -------------------cCCCeEEEEeCCCCcCHHHHHHHHHHH
Confidence 234578999999999 99999998764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.3e-27 Score=181.92 Aligned_cols=160 Identities=21% Similarity=0.287 Sum_probs=123.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|||||||+++|.++.+.....++. +.........+++..+.+.+|||||+++++.++..+++.+|+
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATI---GVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 82 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCC---SEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccce---eecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 34699999999999999999999988755443332 222333334456677899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|||+++. .++.....|+.++.+... ....|+++++||.|...... ..+..+..+
T Consensus 83 ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~------------------- 140 (177)
T d1x3sa1 83 VILVYDVTRR-DTFVKLDNWLNELETYCT--RNDIVNMLVGNKIDKENREVDRNEGLKFAR------------------- 140 (177)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHTTCCS--CSCCEEEEEEECTTSSSCCSCHHHHHHHHH-------------------
T ss_pred EEEEEECCCc-cccccchhhhhhhccccc--ccceeeEEEeeccccccccccHHHHHHHHH-------------------
Confidence 9999999987 778888999988876543 36789999999999865432 222222111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..++.|+++||++|+ ++++++||.+.
T Consensus 141 -----------------~~~~~~~e~Sa~tg~gv~e~f~~l~~~ 167 (177)
T d1x3sa1 141 -----------------KHSMLFIEASAKTCDGVQCAFEELVEK 167 (177)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----------------HCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 234579999999999 99999988765
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1.2e-27 Score=184.32 Aligned_cols=159 Identities=18% Similarity=0.250 Sum_probs=95.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|.+|||||||+++|+++.+.....++. +.++......+++..+.+++|||||++.+...+..+++.+|++
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~ 82 (173)
T d2fu5c1 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI---GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 82 (173)
T ss_dssp EEEEEEECCCCC----------------CHHHHH---CEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccc---cceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence 4689999999999999999999887654433332 2233444445567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
|+|||++++ .++..+..|+..+.... ..+.|+++|+||.|+...... ++..... .
T Consensus 83 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iilv~~k~D~~~~~~~~~~~~~~~~----~--------------- 139 (173)
T d2fu5c1 83 MLVYDITNE-KSFDNIRNWIRNIEEHA---SADVEKMILGNKCDVNDKRQVSKERGEKLA----L--------------- 139 (173)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEEC--CCSCCCSCHHHHHHHH----H---------------
T ss_pred EEEEECCCh-hhHHHHHHHHHHhhhhc---cCCceEEEEEecccchhhcccHHHHHHHHH----H---------------
Confidence 999999997 67888888887776543 377999999999998865433 2211111 1
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|++|||++|+ ++++++||.+.+
T Consensus 140 -----------------~~~~~~~e~Sa~~g~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 140 -----------------DYGIKFMETSAKANINVENAFFTLARDI 167 (173)
T ss_dssp -----------------HHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred -----------------hcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 234579999999999 999999998765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.4e-27 Score=183.47 Aligned_cols=173 Identities=13% Similarity=0.122 Sum_probs=123.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++.+||+++|.+|||||||+++|+.+.+.....+++ ..........++..+.+.+||++|++.+...+..+++.+|
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti----~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 78 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV----FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 78 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCS----CCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccce----eeceeeeeeccCcceEEEeecccccccchhhhhhcccccc
Confidence 466899999999999999999999988766544433 3333344445777789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh-ccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS-AVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~ 220 (267)
++++|||+++. .+++.+..|+....+.. ..++|+++|+||+|+...+.... .... ... .....+
T Consensus 79 ~~ilv~d~~~~-~sf~~i~~~~~~~~~~~---~~~~piilvgnK~Dl~~~~~~~~---~~~~-------~~~~~~~~~~- 143 (183)
T d1mh1a_ 79 VSLICFSLVSP-ASFENVRAKWYPEVRHH---CPNTPIILVGTKLDLRDDKDTIE---KLKE-------KKLTPITYPQ- 143 (183)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHH---STTSCEEEEEECHHHHTCHHHHH---HHHH-------TTCCCCCHHH-
T ss_pred eeeeeeccchH-HHHHHHHHHHHHHHHHh---CCCCcEEEEeecccchhhhhhhh---hhhh-------ccccchhhHH-
Confidence 99999999987 78888877666555542 36789999999999865432111 0000 000 000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
...+....+.+.|+||||++|+ |+++++.|.+.
T Consensus 144 -----------~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~ 177 (183)
T d1mh1a_ 144 -----------GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177 (183)
T ss_dssp -----------HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----------HHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHH
Confidence 0001111345789999999999 99998887654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.9e-27 Score=181.47 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=119.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.++.+.....++. +...........+..+.+.+||++|+..+...+..+++.+|+++
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i 80 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 80 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----C---CSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccce---eeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence 589999999999999999999987654443322 22233333334566678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+++. .++..+..|+..+.+.. ..+.|+++|+||+|+...... ++... +. .
T Consensus 81 lv~d~~~~-~sf~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~-~a---~---------------- 136 (173)
T d2a5ja1 81 LVYDITRR-ETFNHLTSWLEDARQHS---SSNMVIMLIGNKSDLESRRDVKREEGEA-FA---R---------------- 136 (173)
T ss_dssp EEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHH-HH---H----------------
T ss_pred EEEeecCh-HHHHhHHHHHHHHHHhC---CCCCeEEEEecCCchhhhhhhHHHHHHH-HH---H----------------
Confidence 99999997 78999999998887643 367899999999998654432 22111 11 1
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|+++||++|. |++++++|.+.+
T Consensus 137 ----------------~~~~~~~e~Sa~tg~~V~e~f~~i~~~i 164 (173)
T d2a5ja1 137 ----------------EHGLIFMETSAKTACNVEEAFINTAKEI 164 (173)
T ss_dssp ----------------HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----------------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 224579999999999 999998887653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=7.3e-27 Score=179.43 Aligned_cols=161 Identities=21% Similarity=0.291 Sum_probs=115.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|||||||+++++++.+......+. .+.++.......++..+.+++|||||++++..++..+++++|++
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~ 83 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIST--VGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 83 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCC--CSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccce--eeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence 4699999999999999999999887643322211 12233333344567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|.++. .++.....|+....... ....|+++|+||+|+...... ++..+.. .
T Consensus 84 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iilv~~k~d~~~~~~v~~~~~~~~~----~--------------- 140 (170)
T d2g6ba1 84 LLLYDVTNK-ASFDNIQAWLTEIHEYA---QHDVALMLLGNKVDSAHERVVKREDGEKLA----K--------------- 140 (170)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECCSTTSCCCSCHHHHHHHH----H---------------
T ss_pred EEEecCCcc-cchhhhhhhhhhhhhcc---CCCceEEEEEeeechhhcccccHHHHHHHH----H---------------
Confidence 999999987 67888888887776643 367899999999998875432 2222211 1
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+++|+++||++|+ |++++++|.+.++
T Consensus 141 -----------------~~~~~~~e~Sak~g~gi~e~f~~l~~~i~ 169 (170)
T d2g6ba1 141 -----------------EYGLPFMETSAKTGLNVDLAFTAIAKELK 169 (170)
T ss_dssp -----------------HHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----------------HcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence 224579999999999 9999999988753
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.9e-27 Score=183.82 Aligned_cols=172 Identities=15% Similarity=0.110 Sum_probs=122.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|||||||+++++.+.+.....++ ...........++..+.+.+|||+|++++...+..+++.+|++
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t----~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 78 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT----VFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC----SEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCc----eeeecceeEeeCCceeeeeccccccchhhhhhhhhccccccee
Confidence 469999999999999999999998876554433 3333444444567778999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|||+++. ++++.+..|+....... ..+.|+++|+||+|+.......+. +.. .....++.+++.
T Consensus 79 ilv~d~~~~-~Sf~~~~~~~~~~~~~~---~~~~~i~lvgnK~Dl~~~~~~~~~---~~~------~~~~~v~~~~~~-- 143 (191)
T d2ngra_ 79 LVCFSVVSP-SSFENVKEKWVPEITHH---CPKTPFLLVGTQIDLRDDPSTIEK---LAK------NKQKPITPETAE-- 143 (191)
T ss_dssp EEEEETTCH-HHHHHHHHTHHHHHHHH---CTTCCEEEEEECGGGGGCHHHHHH---HHT------TTCCCCCHHHHH--
T ss_pred ecccccchH-HHHHHHHHHHHHHHhhc---CCCCceEEEeccccccccchhhhh---hhh------cccccccHHHHH--
Confidence 999999997 78999987777666542 368999999999999754322110 000 000001110000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.|......+.|+|+||++|+ |+++++.+...
T Consensus 144 ----------~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~ 175 (191)
T d2ngra_ 144 ----------KLARDLKAVKYVECSALTQKGLKNVFDEAILA 175 (191)
T ss_dssp ----------HHHHHTTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----------HHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Confidence 01111244679999999999 99998777653
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.5e-26 Score=177.07 Aligned_cols=164 Identities=14% Similarity=0.178 Sum_probs=120.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.+||+++|++|||||||+++++++.+......+. +..........++..+.+.+||++|..+....+..++..+|+
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 81 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI---GVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 81 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CC---SEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccce---eeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccce
Confidence 45799999999999999999999988655443332 222333344446667889999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCC-CCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++++|.++. .++..+..|+.++..... ....+.|+++|+||+|+.... ..++..+..++
T Consensus 82 ~i~~~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~----------------- 143 (174)
T d1wmsa_ 82 CLLTFSVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----------------- 143 (174)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-----------------
T ss_pred EEEEEeeecc-cccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH-----------------
Confidence 9999999986 678888888877654321 113578999999999996532 23333222211
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..|+||||++|+ |++++++|.+.+
T Consensus 144 ------------------~~~~~~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 144 ------------------NGDYPYFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp ------------------TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------cCCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 234579999999999 999999987653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=6.2e-27 Score=182.42 Aligned_cols=163 Identities=18% Similarity=0.259 Sum_probs=119.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeE--eecc-----cCCCccccEEEEeCCCCCCchhhHHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFV--LHSE-----STKGKIKPVHLVDVPGHSRLRPKLDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~l~DtpG~~~~~~~~~~~ 136 (267)
.+||+++|++|||||||+++|+++.+.....++......... .... ...+..+.+.+|||+|+++++.++..+
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~ 84 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 84 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence 368999999999999999999998876554443322111111 1110 112334679999999999999999999
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~ 214 (267)
++++|++|+|||+++. .+++.+..|+.++..... ....|+++|+||+|+...+.. ++..+..+
T Consensus 85 ~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~------------ 149 (186)
T d2f7sa1 85 FRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAY--CENPDIVLIGNKADLPDQREVNERQARELAD------------ 149 (186)
T ss_dssp HTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCT--TTCCEEEEEEECTTCGGGCCSCHHHHHHHHH------------
T ss_pred HhcCCEEEEEEecccc-ccceeeeeccchhhhhcc--CCCceEEEEeeeccchhhhcchHHHHHHHHH------------
Confidence 9999999999999987 678888888877665432 367889999999999765432 22221111
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|++|||++|+ +++++++|.+.+
T Consensus 150 ------------------------~~~~~~~e~Sak~~~~i~e~f~~l~~~i 177 (186)
T d2f7sa1 150 ------------------------KYGIPYFETSAATGQNVEKAVETLLDLI 177 (186)
T ss_dssp ------------------------HTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ------------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224579999999999 999999998753
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1.8e-26 Score=178.65 Aligned_cols=171 Identities=15% Similarity=0.098 Sum_probs=120.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|||||||+++++.+.+...+.++. ..........++..+.+++||++|++.+...+..+++.+|+++
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~----~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 78 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----FENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 78 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----EEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccCCce----eecccccccccceEEeeccccccccccccccccchhhhhhhhh
Confidence 589999999999999999999998766544433 3344444455778889999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++....|+...+... ..+.|+++|+||+|+......... +.+ .....++..+..
T Consensus 79 lv~d~~~~-~Sf~~~~~~~~~~~~~~---~~~~~iilVgnK~Dl~~~~~~~~~---~~~------~~~~~V~~~e~~--- 142 (179)
T d1m7ba_ 79 ICFDISRP-ETLDSVLKKWKGEIQEF---CPNTKMLLVGCKSDLRTDVSTLVE---LSN------HRQTPVSYDQGA--- 142 (179)
T ss_dssp EEEETTCH-HHHHHHHHTHHHHHHHH---CTTCEEEEEEECGGGGGCHHHHHH---HHT------TTCCCCCHHHHH---
T ss_pred eeeecccC-CCHHHHHHHHHHHHhcc---CCcceEEEEEecccccccchhhHH---Hhh------hhcCcchHHHHH---
Confidence 99999997 78888888777665542 368999999999998643221100 000 000000000000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc--chhHHHHHHhh
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQ 264 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~ 264 (267)
.+....+...|+||||++|+ ++++++.+...
T Consensus 143 ---------~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~ 175 (179)
T d1m7ba_ 143 ---------NMAKQIGAATYIECSALQSENSVRDIFHVATLA 175 (179)
T ss_dssp ---------HHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred ---------HHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence 01111234579999999996 89999877654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.5e-26 Score=176.12 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=115.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
..||+++|++|||||||+++++++.+...+.+++ +..+. .....++..+.+++|||+|...+. ....+++.+|++
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi---~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ 76 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL---ESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGF 76 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC---CEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCce---ecccc-ccccccccceEEEEeecccccccc-cchhhhcccccc
Confidence 4699999999999999999999988765544433 22222 223346777899999999998764 566788999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|||+++. .++..+..|......... ..+.|+++|+||+|+...+. .++..+..+
T Consensus 77 ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~------------------- 134 (168)
T d2atva1 77 VLVYDITDR-GSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLDHSRQVSTEEGEKLAT------------------- 134 (168)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHHT--TSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-------------------
T ss_pred eeecccCCc-cchhhhhhhccccccccc--ccCcceeeeccchhhhhhccCcHHHHHHHHH-------------------
Confidence 999999997 678888776654443221 26789999999999975433 333222111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc--chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ |++++..|.+.+
T Consensus 135 -----------------~~~~~~~e~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 135 -----------------ELACAFYECSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp -----------------HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred -----------------HhCCeEEEEccccCCcCHHHHHHHHHHHH
Confidence 224579999999985 899988877643
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.93 E-value=3.2e-26 Score=178.04 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=121.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|||||||+++++++.+.....++... +.........+..+.+.+|||+|...+...+..++..+|+++
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~---~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 79 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA---DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 79 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSE---EEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccce---eeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEE
Confidence 58999999999999999999998876554444322 233333444666678999999999998888999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCC-CCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|+|.++. .++..+..|+.++..... ....++|+++|+||+|+.......+..+.+. ..
T Consensus 80 ~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~---------------- 139 (184)
T d1vg8a_ 80 LVFDVTAP-NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YS---------------- 139 (184)
T ss_dssp EEEETTCH-HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HH----------------
T ss_pred Eeecccch-hhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH---HH----------------
Confidence 99999886 678888888877765422 1125689999999999876543322221111 10
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
...+.|++|||++|+ |++++++|.+.
T Consensus 140 ---------------~~~~~~~e~Sak~~~gI~e~f~~l~~~ 166 (184)
T d1vg8a_ 140 ---------------KNNIPYFETSAKEAINVEQAFQTIARN 166 (184)
T ss_dssp ---------------TTSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---------------hcCCeEEEEcCCCCcCHHHHHHHHHHH
Confidence 334679999999999 99999998765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.93 E-value=3.7e-26 Score=173.05 Aligned_cols=159 Identities=21% Similarity=0.339 Sum_probs=120.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|||||||+++|.++++........ .... ..+...+.+.+||+||...+......++..+++++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 72 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG---FNVE-----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 72 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS---CCEE-----EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccee---eEEE-----EEeeeeEEEEEecCCCcccchhhhhhhhccceeEE
Confidence 489999999999999999999877533221111 1111 12344578999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+++|..+. .++.....++.++..... ....|+++++||.|+.......++.......
T Consensus 73 ~~~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~-------------------- 129 (160)
T d1r8sa_ 73 FVVDSNDR-ERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLH-------------------- 129 (160)
T ss_dssp EEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTGG--------------------
T ss_pred EEEEecCh-HHHHHHHHHHHHHHHhhc--ccCceEEEEeecccccccccHHHHHHHHHHH--------------------
Confidence 99999987 678888888888877543 2678999999999998776554432211100
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.. ..++.|++|||++|+ ++++++||.+++
T Consensus 130 ----------~~~-~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 130 ----------SLR-HRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp ----------GCS-SCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ----------HHh-hCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 000 345689999999999 999999999864
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6.3e-26 Score=174.88 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=114.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
-+.+||+++|++|||||||+++++++.+... .++..........+++..+.+.+|||+|+..+ .|++.+|
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-----~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad 72 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVL-----EKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWAD 72 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCCCC-----CCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCS
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCCc-----CCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccc
Confidence 3568999999999999999999999886432 12223333344455788899999999998764 3788999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|||+++. .+++.+..|...+...........|+++|+||.|+..........+..++...
T Consensus 73 ~~ilVfd~~~~-~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~--------------- 136 (175)
T d2bmja1 73 AVIFVFSLEDE-NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA--------------- 136 (175)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH---------------
T ss_pred eeEEEeecccc-hhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH---------------
Confidence 99999999997 78888888877765432223467899999999998543221100011111000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+ ..+..|+||||++|. +++++..|.+.
T Consensus 137 ---------------~-~~~~~~~e~SAk~~~~v~~~F~~l~~~ 164 (175)
T d2bmja1 137 ---------------D-MKRCSYYETCATYGLNVDRVFQEVAQK 164 (175)
T ss_dssp ---------------T-STTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ---------------H-hCCCeEEEeCCCCCcCHHHHHHHHHHH
Confidence 0 345689999999999 99998877654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=7.7e-26 Score=172.70 Aligned_cols=156 Identities=19% Similarity=0.300 Sum_probs=115.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-hHHhhhccCCE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-KLDEFLPQAAG 142 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~d~ 142 (267)
.+||+++|++|||||||+++++.+.+.....++.. .........+......+.+||++|...... .+..+++++|+
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 78 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG---VDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 78 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCS---CCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccc---cccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCc
Confidence 46999999999999999999999887655443332 223333334456667899999999887654 46778999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|||+++. .+++.+..|+.++.+... ..++|+++|+||+|+..... .++..+..+
T Consensus 79 ~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~------------------ 137 (165)
T d1z06a1 79 VVFVYDMTNM-ASFHSLPAWIEECKQHLL--ANDIPRILVGNKCDLRSAIQVPTDLAQKFAD------------------ 137 (165)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------------------
T ss_pred eEEEEEeehh-hhhhhhhhhhHHHHhhcc--CCCCeEEEEeccccchhccchhHHHHHHHHH------------------
Confidence 9999999997 789999999988877543 36789999999999976543 222221111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc----chhHHHHH
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE----ISQVEQFI 261 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----i~~l~~~l 261 (267)
..+++|++|||++|. |++++++|
T Consensus 138 ------------------~~~~~~~e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 138 ------------------THSMPLFETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp ------------------HTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred ------------------HCCCEEEEEecccCCcCcCHHHHHHHh
Confidence 223479999999753 88888876
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.4e-25 Score=171.19 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=115.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc-hhhHHhhhccCCE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL-RPKLDEFLPQAAG 142 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~-~~~~~~~~~~~d~ 142 (267)
-+||+++|++|+|||||++++.+..+..... ..+++.+.......+++..+.+.+||++|.... +.....+++.+|+
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~ 80 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSD--CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 80 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCcccc--ccceeeecceeeeccCCceeeeeeeccccccccccccccccccccce
Confidence 4799999999999999999999876432211 122233333344445677788999998764321 2246678999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|||+++. .++..+..|+..+..... ..++|+++|+||+|+...+. .++.. .+.+
T Consensus 81 ~ilvfd~t~~-~s~~~~~~~~~~i~~~~~--~~~~piilvgnK~Dl~~~~~v~~~~~~-~~a~----------------- 139 (172)
T d2g3ya1 81 YLIVYSITDR-ASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGR-ACAV----------------- 139 (172)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHTSGG--GTTSCEEEEEECTTCGGGCCSCHHHHH-HHHH-----------------
T ss_pred eeeeeccccc-chhhhhhhhhhhhhhccc--cCCceEEEEeccccccccccccHHHHH-HHHH-----------------
Confidence 9999999997 789999999888876432 36899999999999976543 22221 1111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ +++++++|.+.+
T Consensus 140 ------------------~~~~~~~e~Sak~g~~i~~~f~~l~~~i 167 (172)
T d2g3ya1 140 ------------------VFDCKFIETSAAVQHNVKELFEGIVRQV 167 (172)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 223579999999999 999999988765
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.4e-24 Score=171.74 Aligned_cols=193 Identities=30% Similarity=0.420 Sum_probs=134.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhh----hcc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEF----LPQ 139 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~----~~~ 139 (267)
.++|+++|++|||||||+|+|+++++... + +...... .+...+..+.+|||||+..++..+..+ ...
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~-t------t~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 73 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT-V------VSQEPLS--AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 73 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB-C------CCSSCEE--ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCe-E------EecceEE--EEEeCCeEEEEEecccccchhhHHHHHHHHHhhh
Confidence 56999999999999999999999875321 1 1111111 223444689999999999877665554 445
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcC-CCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc-c--
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNS-TVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA-V-- 215 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~-~-- 215 (267)
++.+++++|+.+...++.....|+.++.... .....++|+++|+||+|+......+.+.+.+++.++.+...... +
T Consensus 74 ~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 153 (209)
T d1nrjb_ 74 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNE 153 (209)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 6899999998875466777777776554211 01247899999999999998888888888888777776655432 1
Q ss_pred ------ccccccccccCCCCCCCcccccccceeEEEEeeeccCcchhHHHHHHhhc
Q 024474 216 ------SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 265 (267)
Q Consensus 216 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~ 265 (267)
..............+..+.|+.+...+.+++.|++.++++++.+||.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~ekl 209 (209)
T d1nrjb_ 154 VERKINEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 209 (209)
T ss_dssp --------------CTTC----CCCGGGSSSCEEEEECBTTTTBCHHHHHHHHHHC
T ss_pred eeeccchhhhHHHHHHhhccccccchhhCcCCceEEEEeeccccHHHHHHHHHHhC
Confidence 11122333445556677889988889999999999999999999999875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.92 E-value=4.7e-24 Score=164.30 Aligned_cols=164 Identities=20% Similarity=0.297 Sum_probs=118.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|.+|||||||+++|.++++.. +........ .. .......+.+||++|.+..+..+..++..+
T Consensus 12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~----~~~~~~~~~-~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 83 (177)
T d1zj6a1 12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVH----TSPTIGSNV-EE---IVINNTRFLMWDIGGQESLRSSWNTYYTNT 83 (177)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEE----EECCSCSSC-EE---EEETTEEEEEEECCC----CGGGHHHHTTC
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCc----cccccceeE-EE---EeecceEEEEeccccccccccchhhhhccc
Confidence 5778999999999999999999999987532 111111111 11 112236899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++++++|.++. .++.....+......... ....|+++|+||+|+.......++.+.+...
T Consensus 84 ~~~i~v~d~~d~-~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~---------------- 144 (177)
T d1zj6a1 84 EFVIVVVDSTDR-ERISVTREELYKMLAHED--LRKAGLLIFANKQDVKECMTVAEISQFLKLT---------------- 144 (177)
T ss_dssp CEEEEEEETTCT-TTHHHHHHHHHHHHTSGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTGG----------------
T ss_pred eeeeeecccccc-cchhhhhhhhhhhhhccc--ccceEEEEEEEcccccccCcHHHHHHHHHHH----------------
Confidence 999999999987 667776666666655432 3789999999999998777665544433210
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+ ....+++|+++||++|+ ++++++||.+++|
T Consensus 145 --------------~-~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 145 --------------S-IKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp --------------G-CCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred --------------h-hHhcCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 0 01346789999999999 9999999999886
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1e-23 Score=159.87 Aligned_cols=164 Identities=21% Similarity=0.258 Sum_probs=118.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|||||||+|+|.++.+.. +.|+........ ........+||++|...+......++..++++++
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~-----~~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEEL---AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF 73 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEE---CCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCe-----eeceeeEeEEEe---ccCCeeEEEEeeccchhhhhhHhhhhhheeeeee
Confidence 89999999999999999999987532 222222222211 2333679999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
++|.++. ........++........ ..+.|+++++||.|+.......++.+.+.. ..
T Consensus 74 ~~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~------------~~-------- 130 (166)
T d2qtvb1 74 LVDAADP-ERFDEARVELDALFNIAE--LKDVPFVILGNKIDAPNAVSEAELRSALGL------------LN-------- 130 (166)
T ss_dssp EEETTCG-GGHHHHHHHHHHHHTCTT--TTTCCEEEEEECTTSSSCCCHHHHHHHHTC------------SS--------
T ss_pred eccccch-hhhhhhhHHHHhhhhhhc--cCCceEEEEeccccccccCCHHHHHHHhhh------------hh--------
Confidence 9999986 566777777766665443 378899999999999877766555433221 00
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
............+.+++|||++|+ ++++++||.++
T Consensus 131 ----~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~~ 166 (166)
T d2qtvb1 131 ----TTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 166 (166)
T ss_dssp ----CCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTTC
T ss_pred ----hhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhCC
Confidence 000001111445689999999999 99999999875
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=4.6e-24 Score=164.78 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh--------HHhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------LDEF 136 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~~~~ 136 (267)
.+|+++|.+|||||||+|+|++.+.. .+.....++......... .....+.+|||||+...... ...+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~--~~~~~~~tt~~~~~~~~~--~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVA--PISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 81 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCS--CCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCce--eecccCCcccccccceee--eeeeeeeecccccccccccccchhcccccccc
Confidence 47999999999999999999987532 112122222222222222 22357999999998654332 2345
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+..+|++|+|+|++++ ......++.+.++.. ..+.|+++|+||+|+... .++..+.+.+
T Consensus 82 ~~~ad~il~v~D~~~~---~~~~~~~i~~~l~~~---~~~~piilv~NK~Dl~~~--~~~~~~~~~~------------- 140 (178)
T d1wf3a1 82 LADVNAVVWVVDLRHP---PTPEDELVARALKPL---VGKVPILLVGNKLDAAKY--PEEAMKAYHE------------- 140 (178)
T ss_dssp TSSCSEEEEEEETTSC---CCHHHHHHHHHHGGG---TTTSCEEEEEECGGGCSS--HHHHHHHHHH-------------
T ss_pred cccccceeeeechhhh---hcccccchhhheecc---ccchhhhhhhcccccccC--HHHHHHHHHh-------------
Confidence 7889999999999875 333445555555432 257899999999999643 2222221111
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
......++++||++|+ +++|+++|.++++
T Consensus 141 ---------------------~~~~~~~~~iSA~~~~gi~~L~~~i~~~lp 170 (178)
T d1wf3a1 141 ---------------------LLPEAEPRMLSALDERQVAELKADLLALMP 170 (178)
T ss_dssp ---------------------TSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred ---------------------hcccCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 0122357889999999 9999999999885
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.90 E-value=3.5e-24 Score=165.64 Aligned_cols=168 Identities=20% Similarity=0.184 Sum_probs=106.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccee--eeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV--TSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
+..+|+++|++|+|||||+|+|++........ +.....+.+..............+.++|+||+.++.......+..+
T Consensus 4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~ 83 (179)
T d1wb1a4 4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 83 (179)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence 45689999999999999999999743211100 0000001111111111122336789999999999888888899999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+.++. ......+...+.. .++|+++|+||+|+..........+.++..+.. ..
T Consensus 84 d~~ilv~d~~~g~---~~~~~~~~~~~~~-----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~----~~------- 144 (179)
T d1wb1a4 84 DLALIVVDAKEGP---KTQTGEHMLILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS----TH------- 144 (179)
T ss_dssp CEEEEEEETTTCS---CHHHHHHHHHHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH----SS-------
T ss_pred ccccccccccccc---chhhhhhhhhhhh-----cCCcceeccccccccCHHHHHHHHHHHHHHHHH----hh-------
Confidence 9999999999862 2222223333332 678999999999997653333222222222221 00
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
. ..+++++++||++|+ +++|+++|.+.++
T Consensus 145 ----------------~-~~~~~iv~iSA~~g~gi~eL~~~I~~~l~ 174 (179)
T d1wb1a4 145 ----------------N-LKNSSIIPISAKTGFGVDELKNLIITTLN 174 (179)
T ss_dssp ----------------S-GGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------------c-CCCCeEEEEEccCCcCHHHHHHHHHhcCC
Confidence 0 234578999999999 9999999988764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.89 E-value=7e-23 Score=164.12 Aligned_cols=182 Identities=18% Similarity=0.270 Sum_probs=106.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccc--cceeE-----------eecccCCCccccEEEEeCCCCCCch
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN--EDTFV-----------LHSESTKGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~l~DtpG~~~~~ 130 (267)
.+.|+|+|++|+|||||+|+|++.............. ..... .....+......+.++||||+.+|.
T Consensus 5 ~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~ 84 (227)
T d1g7sa4 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (227)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccc
Confidence 3459999999999999999998643211000000000 00000 0111123344579999999999998
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--------------HH
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--------------EF 196 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--------------~~ 196 (267)
......+..+|++|+|+|+.++ ++.....+...+.. .++|+++|+||+|+...... ..
T Consensus 85 ~~~~~~~~~~D~~ilVvda~~g---~~~~~~~~~~~~~~-----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~ 156 (227)
T d1g7sa4 85 TLRKRGGALADLAILIVDINEG---FKPQTQEALNILRM-----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (227)
T ss_dssp TSBCSSSBSCSEEEEEEETTTC---CCHHHHHHHHHHHH-----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred ccchhcccccceEEEEEecccC---cccchhHHHHHhhc-----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHH
Confidence 8888889999999999999886 33333333344432 67899999999998764321 11
Q ss_pred HHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 197 IRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 197 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
....+...+... ............. .+.-......++++++||++|+ +++|++.|.+
T Consensus 157 v~~~~~~~~~~~---~~~l~~~~~~~~~-------~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~ 214 (227)
T d1g7sa4 157 VQQKLDTKVYEL---VGKLHEEGFESER-------FDRVTDFASQVSIIPISAITGEGIPELLTMLMG 214 (227)
T ss_dssp HHHHHHHHHHHH---HHHHHHTTCEEEE-------GGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHhhhhhhh-------hcccccccCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 111121111111 1111111100000 0001112446789999999999 9999988765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=4.2e-23 Score=156.57 Aligned_cols=152 Identities=20% Similarity=0.274 Sum_probs=101.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh--------HHh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------LDE 135 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~~~ 135 (267)
++||+++|++|||||||+|+|++.+.. .+.....++........ ......+.++|+||..+.... ...
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 76 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAA--IVTDIAGTTRDVLREHI--HIDGMPLHIIDTAGLREASDEVERIGIERAWQ 76 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS--CCCSSTTCCCSCEEEEE--EETTEEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce--EeecccccccceEeeee--eccCceeeeccccccccccccchhHHHHHHHH
Confidence 469999999999999999999987642 11112222222222222 222357899999997654322 234
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
++..+|++++++|..+. ........|...+... ..+.|+++|+||+|+......
T Consensus 77 ~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~----~~~~~iilv~NK~Dl~~~~~~--------------------- 130 (161)
T d2gj8a1 77 EIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARL----PAKLPITVVRNKADITGETLG--------------------- 130 (161)
T ss_dssp HHHTCSEEEEEEETTTC-CCCSHHHHCHHHHHHS----CTTCCEEEEEECHHHHCCCCE---------------------
T ss_pred HHHhccccceeeccccc-cchhhhhhhhhhhhhc----ccccceeeccchhhhhhhHHH---------------------
Confidence 57889999999999876 3444444333333222 357899999999997543110
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+++ ....+++++||++|+ |++|+++|.+++
T Consensus 131 -------------------~~~-~~~~~~~~iSAk~~~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 131 -------------------MSE-VNGHALIRLSARTGEGVDVLRNHLKQSM 161 (161)
T ss_dssp -------------------EEE-ETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred -------------------HHH-hCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence 111 234579999999999 999999999874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.88 E-value=9.9e-23 Score=155.11 Aligned_cols=163 Identities=20% Similarity=0.310 Sum_probs=119.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..||+++|.+|||||||+|+++++.+... .++...... . .....+.+.+||++|..........++...+
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVE-T--VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTD 74 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEE-E--EEETTEEEEEEEECCCGGGGGGGGGGCTTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeee-e--eccCceEEEEeeccccccccccchhhhhhhh
Confidence 3567999999999999999999999876321 111111111 1 1223468999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++++|..+. .+......++........ ....|+++|+||.|+.......++...+...
T Consensus 75 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~----------------- 134 (169)
T d1upta_ 75 AVIYVVDSCDR-DRIGISKSELVAMLEEEE--LRKAILVVFANKQDMEQAMTSSEMANSLGLP----------------- 134 (169)
T ss_dssp EEEEEEETTCC-TTHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTGG-----------------
T ss_pred hhhhhhhhhhc-chhhhccchhhhhhhhhc--cccceEEEEEeeccccccccHHHHHHHHHHH-----------------
Confidence 99999999876 556666666666555432 3678999999999998877665544332210
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+. ...+++|+++||++|+ ++++++||.+.++
T Consensus 135 -------------~~-~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 135 -------------AL-KDRKWQIFKTSATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp -------------GC-TTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------------HH-hcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 1346789999999999 9999999988753
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.88 E-value=3.9e-23 Score=159.81 Aligned_cols=175 Identities=25% Similarity=0.335 Sum_probs=115.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.++..||+++|++|||||||+++|.++.+... .++...+... ...+ ...+..||++|...+......+.+..
T Consensus 10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (186)
T d1f6ba_ 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEE-----LTIA--GMTFTTFDLGGHIQARRVWKNYLPAI 81 (186)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE-----EEET--TEEEEEEEECC----CCGGGGGGGGC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccceeE-----EEec--ccccccccccchhhhhhHHhhhhccc
Confidence 46788999999999999999999999875322 2222111111 1112 25688999999999888889999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++++++|.++. ........++........ ..+.|+++++||.|+.......++.+.+.. ...
T Consensus 82 ~~~~~~~d~~d~-~~~~~~~~~~~~~~~~~~--~~~~~~li~~~K~D~~~~~~~~~i~~~~~~--------------~~~ 144 (186)
T d1f6ba_ 82 NGIVFLVDCADH-ERLLESKEELDSLMTDET--IANVPILILGNKIDRPEAISEERLREMFGL--------------YGQ 144 (186)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTSCEEEEEECTTSTTCCCHHHHHHHHTC--------------TTT
T ss_pred ceeeeeeeccCc-cchHHHHHHHHHhhcccc--cCCCceEEEEeccCccccCCHHHHHHHHhh--------------ccc
Confidence 999999999986 556666666665555432 378999999999999887776655443321 000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.... ....... ....++.+++|||++|+ ++++++||.+++
T Consensus 145 ~~~~----~~~~~~~-~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 145 TTGK----GSVSLKE-LNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp CCCS----SCCCTTT-CCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred chhh----hhhhHHH-hhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 0000 0000000 01346789999999999 999999999875
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=4.2e-23 Score=159.61 Aligned_cols=157 Identities=15% Similarity=0.217 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-------hhHHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-------PKLDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-------~~~~~~~~ 138 (267)
.|+++|.+|||||||+|+|++... .+.+....+......... ......+++|||||..... .....++.
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~---~~~~~~~~t~~~~~~~~~-~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~ 78 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHP---KIAPYPFTTLSPNLGVVE-VSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA 78 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC---EECCCTTCSSCCEEEEEE-CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---ceeccCCCceeeeeceee-ecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHH
Confidence 699999999999999999998653 222222222322222222 2233478999999965422 22345678
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
.++++++++|.... .......+...+.... ....++|+++|+||+|+......+. +.+.+.
T Consensus 79 ~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~D~~~~~~~~~----~~~~~~------------ 139 (180)
T d1udxa2 79 RTRVLLYVLDAADE--PLKTLETLRKEVGAYD-PALLRRPSLVALNKVDLLEEEAVKA----LADALA------------ 139 (180)
T ss_dssp SSSEEEEEEETTSC--HHHHHHHHHHHHHHHC-HHHHHSCEEEEEECCTTSCHHHHHH----HHHHHH------------
T ss_pred hhhhhhhhcccccc--cccchhhhhhhhhccc-cccchhhhhhhhhhhhhhhHHHHHH----HHHHHH------------
Confidence 89999999998764 1222222222221110 0124679999999999975432222 111111
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ +++|++.|.+.+
T Consensus 140 --------------------~~~~~~~~iSA~tg~gid~L~~~i~~~l 167 (180)
T d1udxa2 140 --------------------REGLAVLPVSALTGAGLPALKEALHALV 167 (180)
T ss_dssp --------------------TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------hcCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.87 E-value=3.1e-22 Score=156.65 Aligned_cols=170 Identities=19% Similarity=0.220 Sum_probs=106.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccee---e--ee-----------ccccceeEeecc-----cCCCccccEEE
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV---T--SM-----------EPNEDTFVLHSE-----STKGKIKPVHL 120 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~---~--~~-----------~~~~~~~~~~~~-----~~~~~~~~~~l 120 (267)
++..+|+++|+.++|||||+++|++........ . +. .+.......... ........+.+
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 455689999999999999999998743211000 0 00 000000000000 00112346899
Q ss_pred EeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHH
Q 024474 121 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ 200 (267)
Q Consensus 121 ~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 200 (267)
+||||+.+|.....+.+..+|++++|+|+.++. ......+.+..+... ...+++++.||+|+.+.....+..+.
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~-~~~~t~e~~~~~~~~-----~~~~iiv~inK~D~~d~~~~~~~~~~ 156 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPC-PRPQTREHLMALQII-----GQKNIIIAQNKIELVDKEKALENYRQ 156 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-SCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred eccchhhhhhHHhhcccccccccccccchhhhh-hhhhhHHHHHHHHHh-----cCccceeeeecccchhhHHHHHHHHH
Confidence 999999999998888899999999999999862 122333333322221 23458889999999754322222222
Q ss_pred HHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 201 MEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.+.+.. ....+++++++||++|+ +++|++.|.+++|
T Consensus 157 ~~~~~~~-----------------------------~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 157 IKEFIEG-----------------------------TVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHHHHTT-----------------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhcc-----------------------------ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 2222211 00235679999999999 9999999999887
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.86 E-value=6.4e-22 Score=154.37 Aligned_cols=171 Identities=14% Similarity=0.128 Sum_probs=109.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC-----cc-cc-----eeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS-----TH-QG-----TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~-----~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
+..+|+++|++++|||||+++|++.. .. .. ....-...+.+.......+......++++||||+.+|..
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~ 81 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence 45689999999999999999997410 00 00 000011111222222223344557899999999999998
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHh
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~ 210 (267)
...+.+..+|++|+|+|+.++. ..+..+.+..+... ...|+||++||+|+..... .+.+..+++..+..+.
T Consensus 82 ~~~~~~~~aD~allVVda~~G~--~~QT~~~~~~a~~~-----~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~- 153 (196)
T d1d2ea3 82 NMITGTAPLDGCILVVAANDGP--MPQTREHLLLARQI-----GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG- 153 (196)
T ss_dssp HHHHTSSCCSEEEEEEETTTCS--CHHHHHHHHHHHHT-----TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhcCeEEEEEEcCCCC--chhHHHHHHHHHHh-----cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhC-
Confidence 8889999999999999999862 23333333333331 3457899999999875321 1222223333222110
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC----------c-chhHHHHHHhhcCC
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----------E-ISQVEQFIREQVKP 267 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----------~-i~~l~~~l~~~~~p 267 (267)
+ ....++++++||++| . +.+|++.|.+++||
T Consensus 154 ------------------------~--~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~ 195 (196)
T d1d2ea3 154 ------------------------Y--KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (196)
T ss_dssp ------------------------S--CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ------------------------C--CcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCCC
Confidence 0 023457899999998 4 89999999999876
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.3e-22 Score=155.40 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=92.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch---------hhHHhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR---------PKLDEF 136 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~---------~~~~~~ 136 (267)
+|+++|++|||||||+|+|++.... .+.....++...... ........+.++|+||..... .....+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~--~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 77 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKA--IVEDEEGVTRDPVQD--TVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM 77 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC----------------CCSEE--EEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcc--eecccCceeeccccc--cccccccccccccccceeeeeccccccccccccccc
Confidence 6999999999999999999986532 111111111111111 122333579999999964322 123345
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+..+|++++++|.+.. .......+...+.. .++|+++|+||+|+... ....+.+.+.+
T Consensus 78 ~~~ad~i~~~~~~~~~---~~~~~~~~~~~l~~-----~~~pviiv~NK~Dl~~~-----~~~~~~~~~~~--------- 135 (171)
T d1mkya1 78 IREADLVLFVVDGKRG---ITKEDESLADFLRK-----STVDTILVANKAENLRE-----FEREVKPELYS--------- 135 (171)
T ss_dssp HTTCSEEEEEEETTTC---CCHHHHHHHHHHHH-----HTCCEEEEEESCCSHHH-----HHHHTHHHHGG---------
T ss_pred cccCcEEEEeeccccc---cccccccccccccc-----ccccccccchhhhhhhh-----hhhHHHHHHHh---------
Confidence 7889999999998875 22222333333332 57899999999998521 11111111110
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ +++|++||.++++
T Consensus 136 ----------------------~~~~~~i~iSAk~g~gid~L~~~i~~~l~ 164 (171)
T d1mkya1 136 ----------------------LGFGEPIPVSAEHNINLDTMLETIIKKLE 164 (171)
T ss_dssp ----------------------GSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----------------------cCCCCeEEEecCCCCCHHHHHHHHHHhCC
Confidence 011245889999999 9999999998764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.86 E-value=1e-21 Score=154.88 Aligned_cols=172 Identities=19% Similarity=0.176 Sum_probs=105.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-------eeeeccccceeEeec---------c----------cCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-------VTSMEPNEDTFVLHS---------E----------STKGK 114 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-------~~~~~~~~~~~~~~~---------~----------~~~~~ 114 (267)
.++..+|+++|+.++|||||+++|++....... ..........+.... . .....
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF 84 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence 356679999999999999999999863211000 000000000000000 0 00111
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 194 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 194 (267)
...++++||||+.+|.......+..+|++|+|+|+.++- ......+.+ .++.. ..-.|++|++||+|+......
T Consensus 85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi-~~~~t~e~~-~~~~~----~~i~~iIV~vNK~Dl~~~~~~ 158 (205)
T d2qn6a3 85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF-PQPQTREHF-VALGI----IGVKNLIIVQNKVDVVSKEEA 158 (205)
T ss_dssp EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCS-SCHHHHHHH-HHHHH----TTCCCEEEEEECGGGSCHHHH
T ss_pred eEEEEEeccchHHHHHhhhhcceeccccccccccccccc-cchhHHHHH-HHHHH----cCCceeeeccccCCCccchHH
Confidence 236899999999999888888899999999999999861 122222222 23322 123488999999999754332
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 195 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
......+.+.+.. ....+++++++||++|+ |++|++.|.+++|+
T Consensus 159 ~~~~~~~~~~l~~-----------------------------~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 159 LSQYRQIKQFTKG-----------------------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHHHHHTT-----------------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcc-----------------------------ccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 2222222221110 01235679999999999 99999999999874
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=4.7e-21 Score=149.80 Aligned_cols=160 Identities=20% Similarity=0.209 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh----------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---------- 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---------- 131 (267)
...++|+++|.+|||||||+|+|++.+.. ........++........ ...+.+.|++|......
T Consensus 21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~ 94 (195)
T d1svia_ 21 GGLPEIALAGRSNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFYII-----NDELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEE-----TTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHhcCCCce-EEeecccceeeecccccc-----cccceEEEEEeeccccccccccchhhh
Confidence 34568999999999999999999986421 111111111222221111 13567788887542111
Q ss_pred ---hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 132 ---KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ---~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
.....+..+|++++|+|++.+ +......+.+.++. .++|+++|+||+|+.......+..+.+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~vi~viD~~~~---~~~~~~~~~~~l~~-----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~-- 164 (195)
T d1svia_ 95 MIETYITTREELKAVVQIVDLRHA---PSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN-- 164 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSC---CCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT--
T ss_pred HHhhhhccccchhhhhhhhhcccc---cccccccccccccc-----ccCcceechhhccccCHHHHHHHHHHHHHHhc--
Confidence 112344567999999999875 23333333444442 67899999999998765554444444433221
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....+++++||++|+ +++|+++|.+.+.
T Consensus 165 -----------------------------~~~~~~~~~~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 165 -----------------------------IDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp -----------------------------CCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred -----------------------------ccCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 1344578999999999 9999999998764
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=2.7e-21 Score=149.53 Aligned_cols=157 Identities=20% Similarity=0.273 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch---------------
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR--------------- 130 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~--------------- 130 (267)
.|+++|.||||||||+|+|++.... +...+.++..... +.. ..+.++||||.....
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~---~~~~~g~T~~~~~----~~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~ 72 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVR---RGKRPGVTRKIIE----IEW--KNHKIIDMPGFGFMMGLPKEVQERIKDEIV 72 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS---SSSSTTCTTSCEE----EEE--TTEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce---eeCCCCEeecccc----ccc--ccceecccCCceeccccccccccccchhhh
Confidence 6899999999999999999987642 2222222222111 111 257899999964221
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCc--------hHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPN--------CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~ 202 (267)
......++.+|++++|+|+...... .......+.+.+.. .+.|+++|+||+|+... .+...+.+.
T Consensus 73 ~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-----~~~p~iiv~NK~D~~~~--~~~~~~~~~ 145 (184)
T d2cxxa1 73 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKN--VQEVINFLA 145 (184)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSC--HHHHHHHHH
T ss_pred hhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH-----cCCCEEEEEeeeehhhh--HHHHHHHHH
Confidence 1123456789999999998642000 00111122222322 67899999999998643 233222222
Q ss_pred HHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 203 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.+.. . +. .....++++||++|+ +++|+++|.+.++
T Consensus 146 ~~~~~---~-----------------------~~--~~~~~~~~vSA~~g~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 146 EKFEV---P-----------------------LS--EIDKVFIPISAKFGDNIERLKNRIFEVIR 182 (184)
T ss_dssp HHHTC---C-----------------------GG--GHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcc---c-----------------------cc--ccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence 21110 0 01 123357899999999 9999999998764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=1.9e-21 Score=150.79 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-----------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR----------- 130 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~----------- 130 (267)
.+.+||+++|.+|+|||||+|+|++.... .+.....++..........++ ..+.++|+||.....
T Consensus 6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~ 81 (186)
T d1mkya2 6 TDAIKVAIVGRPNVGKSTLFNAILNKERA--LVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYS 81 (186)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTE--EECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCcc--eeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccch
Confidence 35689999999999999999999986531 111111111111111122233 468889999975322
Q ss_pred -hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHH
Q 024474 131 -PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDK 207 (267)
Q Consensus 131 -~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~ 207 (267)
.....+++.+|++++|+|+..+ ......++...+.. .+.|+++|+||+|+..... ..+..+.+.+.+.
T Consensus 82 ~~~~~~~~~~~dvii~v~d~~~~---~~~~~~~~~~~~~~-----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~- 152 (186)
T d1mkya2 82 NYRVVDSIEKADVVVIVLDATQG---ITRQDQRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY- 152 (186)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTC---CCHHHHHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG-
T ss_pred hHHHHHHHhcCCEEEEeeccccc---chhhHHHHHHHHHH-----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhc-
Confidence 2344567889999999999875 22333333333332 6789999999999875432 2222222221110
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+ ....+++++||++|. +++|+++|.+.+
T Consensus 153 ---------------------------~---~~~~~i~~vSa~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 153 ---------------------------F---IDYSPLIFTSADKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp ---------------------------G---GTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------------c---cCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 123468999999999 999999998754
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=2e-21 Score=147.04 Aligned_cols=149 Identities=20% Similarity=0.250 Sum_probs=95.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch---------hhHHh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR---------PKLDE 135 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~---------~~~~~ 135 (267)
.||+++|.+|||||||+|+|++..... ......++........ ...+..+.+|||||..... .....
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~ 76 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAI--VTDIPGTTRDVISEEI--VIRGILFRIVDTAGVRSETNDLVERLGIERTLQ 76 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC--CCCSSCCSSCSCCEEE--EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee--eeccccccccceeEEE--EeCCeeEEeccccccccCCccHHHHHHHHHHHH
Confidence 389999999999999999999865321 1111111111111111 2233679999999953211 12334
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.+..+|++++|+|++++ ..... . .+...+ ...++++++||+|+......+++.+.+
T Consensus 77 ~~~~ad~ii~v~d~~~~-~~~~~-~-~~~~~~-------~~~~~i~~~~k~d~~~~~~~~~~~~~~-------------- 132 (160)
T d1xzpa2 77 EIEKADIVLFVLDASSP-LDEED-R-KILERI-------KNKRYLVVINKVDVVEKINEEEIKNKL-------------- 132 (160)
T ss_dssp HHHHCSEEEEEEETTSC-CCHHH-H-HHHHHH-------TTSSEEEEEEECSSCCCCCHHHHHHHH--------------
T ss_pred HHHhCCEEEEEEeCCCC-cchhh-h-hhhhhc-------ccccceeeeeeccccchhhhHHHHHHh--------------
Confidence 56789999999999986 22222 1 222222 456899999999998776654433221
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
....+++++||++|+ |++|+++|.+.
T Consensus 133 -----------------------~~~~~~~~vSA~~g~gi~~L~~~I~ke 159 (160)
T d1xzpa2 133 -----------------------GTDRHMVKISALKGEGLEKLEESIYRE 159 (160)
T ss_dssp -----------------------TCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred -----------------------CCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence 112357899999999 99999999763
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.84 E-value=2e-21 Score=150.68 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=96.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----chh---hHHhhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----LRP---KLDEFL 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----~~~---~~~~~~ 137 (267)
..|+++|++|||||||+|+|++... .+.+..+++...........+ ...+.+|||||+.+ ... .....+
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~---~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~ 77 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKP---KIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHI 77 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC---EESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCC---ceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHH
Confidence 3699999999999999999988653 223333333332222222221 23689999999631 111 122345
Q ss_pred ccCCEEEEEEeCCCCCC-chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 138 PQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
..++.++++++...... .....................++|+++|+||+|+.... +. ++...+.
T Consensus 78 ~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~---~~---~~~~~~~--------- 142 (185)
T d1lnza2 78 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA---EN---LEAFKEK--------- 142 (185)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH---HH---HHHHHHH---------
T ss_pred HHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH---HH---HHHHHHH---------
Confidence 67899999998765311 11121111111111111123578999999999996431 11 1111111
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+..+.+++++||++|+ +++|+++|.++++
T Consensus 143 ---------------------~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~ 172 (185)
T d1lnza2 143 ---------------------LTDDYPVFPISAVTREGLRELLFEVANQLE 172 (185)
T ss_dssp ---------------------CCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred ---------------------hccCCcEEEEECCCCCCHHHHHHHHHHhhh
Confidence 1223467899999999 9999999998874
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=2.4e-21 Score=150.99 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=109.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+..||+++|..|||||||+++|....++..... ...++...+.+++|||+|++.++..+..|++.+++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~------------~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~ 68 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV------------ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTA 68 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE------------EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCccEE------------EEEEEeeeeeeeeeccccccccccchhhcccCCce
Confidence 357999999999999999999987665322111 11123344689999999999999999999999999
Q ss_pred EEEEEeCCCCCCc----------hHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC-----------------CCHH
Q 024474 143 IVFVVDALEFLPN----------CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA-----------------HTKE 195 (267)
Q Consensus 143 ii~v~d~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~-----------------~~~~ 195 (267)
+++|+|.++. .+ ..+...++..++.... ..+.|+++++||+|+... ....
T Consensus 69 ~i~v~d~~~~-~~~~~~~~~~~~~~e~~~~~~~i~~~~~--~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
T d1svsa1 69 IIFCVALSDY-DLVLAEDEEMNRMHESMKLFDSICNNKW--FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYE 145 (195)
T ss_dssp EEEEEEGGGG-GCBCSSCTTSBHHHHHHHHHHHHHTCGG--GTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHH
T ss_pred eeeEEeeccc-chHHHHhhhhHHHHHHHHHHHHHhcccc--cCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHH
Confidence 9999998764 22 2344455555555432 378899999999996321 1111
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 196 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+....+...+... . ......++.++++||++|+ |+++++.+.+.+
T Consensus 146 ~~~~~~~~~f~~~---~----------------------~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i 191 (195)
T d1svsa1 146 EAAAYIQCQFEDL---N----------------------KRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191 (195)
T ss_dssp HHHHHHHHHHHTT---C----------------------SCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---h----------------------cccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence 1111111111100 0 0011346678899999999 999999887653
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=9.6e-21 Score=148.79 Aligned_cols=120 Identities=19% Similarity=0.153 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--------Ccccceeeeeccc----cceeEeecccCCCccccEEEEeCCCCCCch
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--------STHQGTVTSMEPN----EDTFVLHSESTKGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 130 (267)
+.++|+++|++++|||||+++|+.. ........+..+. +.+.......+...+..++++||||+.+|.
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~ 81 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 81 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence 4579999999999999999999631 0000000000000 111111111223444689999999999999
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVT 190 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~ 190 (267)
....+.++.+|++|+|+|+.++ ..........+... .++| +++++||+|+.+
T Consensus 82 ~~~~~~~~~aD~avlVvda~~G---v~~qt~~~~~~~~~-----~gi~~iiv~iNK~D~~~ 134 (204)
T d2c78a3 82 KNMITGAAQMDGAILVVSAADG---PMPQTREHILLARQ-----VGVPYIVVFMNKVDMVD 134 (204)
T ss_dssp HHHHHHHTTCSSEEEEEETTTC---CCHHHHHHHHHHHH-----TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHCCEEEEEEECCCC---CcHHHHHHHHHHHH-----cCCCeEEEEEEecccCC
Confidence 9999999999999999999987 33333333333332 5665 778899999875
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=2.1e-20 Score=146.13 Aligned_cols=116 Identities=21% Similarity=0.220 Sum_probs=87.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+..||+++|..|||||||++++..+.+. +.+|++. . .. .+....+.+++||++|+..++..+..+++.+++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~---~--~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 71 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGI---I--EY--PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTS 71 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSC---E--EE--EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeE---E--EE--EEeccceeeeeccccccccccccccccccccce
Confidence 3579999999999999999999887753 3333321 1 11 123344789999999999999999999999999
Q ss_pred EEEEEeCCCCC---------CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 143 IVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 143 ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+++++|.++.. ....+...++..++.... ..+.|+++++||+|+.
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~--~~~~~~~~v~NK~Dl~ 125 (200)
T d2bcjq2 72 IMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW--FQNSSVILFLNKKDLL 125 (200)
T ss_dssp EEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG--GSSSEEEEEEECHHHH
T ss_pred eeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhh--ccCccEEEecchhhhh
Confidence 99999987641 123445555666665432 3789999999999974
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=2.6e-20 Score=145.84 Aligned_cols=114 Identities=25% Similarity=0.328 Sum_probs=79.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|.+|||||||++++. +.....+|++ +.. ..++.+...+++||++|++.++..+..+++.++++
T Consensus 2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG-----~~~--~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~ 71 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKG-----IHE--YDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSI 71 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSS-----EEE--EEEEETTEEEEEEEECC-------CTTSCTTCCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeee-----eEE--EEEeeeeeeeeeecccceeeeccccccccccccee
Confidence 4699999999999999999993 2222333332 111 12233457899999999999999999999999999
Q ss_pred EEEEeCCCCC---------CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 144 VFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 144 i~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
++++|.++.. ..+.....++..++.... ..++|+++|+||+|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~ 124 (200)
T d1zcba2 72 LFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV--FSNVSIILFLNKTDLL 124 (200)
T ss_dssp EEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG--GTTSEEEEEEECHHHH
T ss_pred EEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChh--hcCceEEEEeccchhh
Confidence 9999998742 224566677777776543 3789999999999974
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.79 E-value=4.2e-19 Score=140.77 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=96.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccceee-----------e---------------eccccceeEeecccCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVT-----------S---------------MEPNEDTFVLHSESTK 112 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~-----------~---------------~~~~~~~~~~~~~~~~ 112 (267)
+++..+|+++|+.++|||||+++|+.. .+...... + ....+.+.........
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 446678999999999999999999631 11000000 0 0000000111111112
Q ss_pred CccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCC-cEEEEEecCCCCCC
Q 024474 113 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-PVLICCNKTDKVTA 191 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-pvivv~nK~Dl~~~ 191 (267)
.....+.++||||+.+|.......+..+|++++|+|+.++. ..+..+. ..++.. .++ .+++++||+|+...
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~--~~Qt~e~-~~~~~~-----~gv~~iiv~vNK~D~~~~ 157 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV--QTQTRRH-SYIASL-----LGIKHIVVAINKMDLNGF 157 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS--CHHHHHH-HHHHHH-----TTCCEEEEEEECTTTTTS
T ss_pred ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCc--ccchHHH-HHHHHH-----cCCCEEEEEEEccccccc
Confidence 23457999999999999999999999999999999999862 2233333 333332 454 48999999999754
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-c
Q 024474 192 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-I 254 (267)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i 254 (267)
.. +..+...+.+..+..... |. ..++.|+|+||++|+ |
T Consensus 158 ~~--~~~~~~~~~l~~~~~~~~---------------------~~--~~~i~~IPiSA~~G~ni 196 (222)
T d1zunb3 158 DE--RVFESIKADYLKFAEGIA---------------------FK--PTTMAFVPMSALKGDNV 196 (222)
T ss_dssp CH--HHHHHHHHHHHHHHHTTT---------------------CC--CSEEEEEECCTTTCTTT
T ss_pred cc--eehhhhHHHHhhhhHhhc---------------------cC--CCceEEEEEEcccCccC
Confidence 32 222222222322211100 00 346789999999998 5
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=8.2e-18 Score=129.04 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHH---------hh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD---------EF 136 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---------~~ 136 (267)
.|+++|.+|||||||+|+|++.+.. ..+..+.+........... ....+..+|++|......... ..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~---~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKIS---ITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 82 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEE---ECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce---eeccCCCceEEEEEeeeec-CCceeEeecCCCceecchhhhhhhhhhccccc
Confidence 5899999999999999999987642 2222222221111111111 223577889998754322211 12
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
...+++++++.|..+. ......+...+.. ...|+++|+||+|..... .......+....
T Consensus 83 ~~~~~~~l~~~d~~~~---~~~~~~~~~~l~~------~~~~~i~v~~k~d~~~~~--~~~~~~~~~~~~---------- 141 (179)
T d1egaa1 83 IGDVELVIFVVEGTRW---TPDDEMVLNKLRE------GKAPVILAVNKVDNVQEK--ADLLPHLQFLAS---------- 141 (179)
T ss_dssp CCCEEEEEEEEETTCC---CHHHHHHHHHHHS------SSSCEEEEEESTTTCCCH--HHHHHHHHHHHT----------
T ss_pred hhhcceeEEEEecCcc---chhHHHHHHHhhh------ccCceeeeeeeeeccchh--hhhhhHhhhhhh----------
Confidence 3457788889998764 2333333333332 567899999999987542 222222211111
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....+++++||++|+ +++|+++|.++++
T Consensus 142 ---------------------~~~~~~~~~vSA~~g~gi~~L~~~i~~~lp 171 (179)
T d1egaa1 142 ---------------------QMNFLDIVPISAETGLNVDTIAAIVRKHLP 171 (179)
T ss_dssp ---------------------TSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred ---------------------hcCCCCEEEEeCcCCCCHHHHHHHHHHhCC
Confidence 0233478999999999 9999999999986
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=1.1e-18 Score=138.73 Aligned_cols=115 Identities=23% Similarity=0.282 Sum_probs=88.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|+.|||||||++++..+.+ ++|++. ..... ..+.+.+++||++|+..++..+..+++++++
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~-----~~~~~--~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ 73 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGI-----FETKF--QVDKVNFHMFDVGGQRDERRKWIQCFNDVTA 73 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSC-----EEEEE--EETTEEEEEEECCCSTTTTTGGGGGCTTCSE
T ss_pred hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCe-----EEEEE--EECcEEEEEEecCccceeccchhhhcccccc
Confidence 457999999999999999999976543 223321 11112 2234789999999999999999999999999
Q ss_pred EEEEEeCCCC---------CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 143 IVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 143 ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+++|+|.++. ...+.+...++..++.+... .++|+++++||+|+..
T Consensus 74 ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~--~~~~iil~~NK~Dl~~ 128 (221)
T d1azta2 74 IIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL--RTISVILFLNKQDLLA 128 (221)
T ss_dssp EEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGG--SSCEEEEEEECHHHHH
T ss_pred eEEEEEccccccccccccchHHHHHHHHHHHHHhcChhh--CCCcEEEEechhhhhh
Confidence 9999998752 13456667778888876543 7899999999999853
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.75 E-value=4.1e-18 Score=137.14 Aligned_cols=167 Identities=19% Similarity=0.162 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccce--------------------ee-e---eccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VT-S---MEPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~--------------------~~-~---~~~~~~~~~~~~~~~~~~~ 115 (267)
++.++|+++|+.++|||||+.+|+.. .+.... .. . ....+.+............
T Consensus 22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 101 (245)
T d1r5ba3 22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 101 (245)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence 45568999999999999999999421 110000 00 0 0000011111111122344
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchH-------HHHHHHHHHHhcCCCCCCCC-cEEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS-------AASEYLYDILTNSTVVKKKI-PVLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~-pvivv~nK~D 187 (267)
..+.++||||+.+|.....+....+|++++|+|+.++ .++ +..+.+. ++.. .++ ++++++||+|
T Consensus 102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G--~~~~~~~~~~QT~e~l~-l~~~-----~~i~~iiv~iNKmD 173 (245)
T d1r5ba3 102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG--EFEAGFERGGQTREHAV-LART-----QGINHLVVVINKMD 173 (245)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTT--HHHHTTSTTCCHHHHHH-HHHH-----TTCSSEEEEEECTT
T ss_pred ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCC--ccCCccccccchHHHHH-HHHH-----cCCCeEEEEEEcCC
Confidence 6799999999999999999999999999999999875 111 2223332 2221 344 4889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhH
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQV 257 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l 257 (267)
+......+...+.+.+.+..+....... .....++|+|+||++|+ |.++
T Consensus 174 ~~~~~~~e~~~~ei~~~l~~~l~~i~~~---------------------~~~~~v~~VPiSA~~G~nI~~~ 223 (245)
T d1r5ba3 174 EPSVQWSEERYKECVDKLSMFLRRVAGY---------------------NSKTDVKYMPVSAYTGQNVKDR 223 (245)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCC---------------------CHHHHEEEEECBTTTTBTTSSC
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHhCc---------------------CcccCCEEEEeeccCCCCcccc
Confidence 9865543333333333333221111110 00235789999999999 7654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=4.7e-18 Score=138.13 Aligned_cols=132 Identities=20% Similarity=0.253 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc--CCcccc-------eeeeeccc----cceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-------TVTSMEPN----EDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-------~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
+.++|+++|+.|+|||||+.+|+. +...+. .+....+. +.+.......+..++.+++++||||+.+|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence 345899999999999999999853 111110 11111111 11111111222345578999999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
.......++.+|++|+|+|+.++ .+.....+.+... ..++|.++++||+|..... .....+.+++
T Consensus 85 ~~e~~~~l~~~D~avlVvda~~G---v~~~T~~~w~~a~-----~~~lP~i~fINKmDr~~ad-~~~~l~ei~~ 149 (276)
T d2bv3a2 85 TIEVERSMRVLDGAIVVFDSSQG---VEPQSETVWRQAE-----KYKVPRIAFANKMDKTGAD-LWLVIRTMQE 149 (276)
T ss_dssp STTHHHHHHHCCEEEEEEETTTS---SCHHHHHHHHHHH-----TTTCCEEEEEECTTSTTCC-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhheEEeccccCC---cchhHHHHHHHHH-----HcCCCEEEEEecccccccc-cchhHHHHHH
Confidence 99999999999999999999987 4444444444444 2789999999999987653 3344444443
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.73 E-value=6.8e-18 Score=136.87 Aligned_cols=117 Identities=25% Similarity=0.292 Sum_probs=79.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC--ccc------ce-eeeecc----ccceeEeecccCCCccccEEEEeCCCCCCchh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS--THQ------GT-VTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~--~~~------~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
++|+++|+.++|||||+.+|+... ..+ .. +....+ ...+..........++.+++++||||+.+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence 479999999999999999985311 111 00 000000 01111111112233446899999999999999
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.....++.+|++|+|+|+.++ .+.....+.+.... .++|.++++||+|..
T Consensus 83 e~~~al~~~D~avlvvda~~G---v~~~t~~~~~~~~~-----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAG---VQVGTERAWTVAER-----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTC---SCHHHHHHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred hhhhhhcccCceEEEeeccCC---ccchhHHHHHhhhh-----ccccccccccccccc
Confidence 999999999999999999986 34343334444432 789999999999963
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=9.7e-18 Score=134.32 Aligned_cols=123 Identities=19% Similarity=0.159 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--CCccc--------------------ceeeee----ccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQ--------------------GTVTSM----EPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~--------------------~~~~~~----~~~~~~~~~~~~~~~~~~ 115 (267)
+...+|+++|+.++|||||+.+|+. +.... +..... ...+.+.......+....
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 4457999999999999999999852 11100 000000 000111111111123344
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCch-------HHHHHHHHHHHhcCCCCCCCCc-EEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNC-------SAASEYLYDILTNSTVVKKKIP-VLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~D 187 (267)
++++++|||||.+|.....+.+..+|++|+|+|+..+ .+ .+..+.+..... .++| +|+++||+|
T Consensus 84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G--~~e~g~~~~~QT~eh~~~~~~------~gv~~iiv~iNKmD 155 (239)
T d1f60a3 84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG--EFEAGISKDGQTREHALLAFT------LGVRQLIVAVNKMD 155 (239)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH--HHHHHTCTTSHHHHHHHHHHH------TTCCEEEEEEECGG
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC--ccccccCchHhHHHHHHHHHH------cCCCeEEEEEECCC
Confidence 7899999999999999999999999999999999864 11 123333322222 4555 788999999
Q ss_pred CCCCC
Q 024474 188 KVTAH 192 (267)
Q Consensus 188 l~~~~ 192 (267)
+....
T Consensus 156 ~~~~d 160 (239)
T d1f60a3 156 SVKWD 160 (239)
T ss_dssp GGTTC
T ss_pred CCCCC
Confidence 87654
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.72 E-value=1.4e-17 Score=132.59 Aligned_cols=164 Identities=20% Similarity=0.154 Sum_probs=97.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--cccce--------------------eee----eccccceeEeecccCCCccc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT--------------------VTS----MEPNEDTFVLHSESTKGKIK 116 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~~--------------------~~~----~~~~~~~~~~~~~~~~~~~~ 116 (267)
+..+|+++|+.++|||||+.+|+... ..... ... ....+.+............+
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 35699999999999999999985311 00000 000 00001111111222234457
Q ss_pred cEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCc-----hHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 117 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPN-----CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
.++++||||+.+|.......++.+|++|+|+|+.++-.. .....+.+.-... ..-.++|+++||+|+...
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-----~~~~~iIv~iNK~D~~~~ 156 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-----MGLDQLIVAVNKMDLTEP 156 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-----TTCTTCEEEEECGGGSSS
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-----hCCCceEEEEEcccCCCc
Confidence 899999999999999999999999999999999985100 1122222221111 133468899999999865
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-c
Q 024474 192 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-I 254 (267)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i 254 (267)
.......+.+...+..+..... ....++.++++||.+|+ +
T Consensus 157 ~~~~~~~~~v~~~i~~~~~~~~-----------------------~~~~~i~~IPISA~~G~NV 197 (224)
T d1jnya3 157 PYDEKRYKEIVDQVSKFMRSYG-----------------------FNTNKVRFVPVVAPSGDNI 197 (224)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT-----------------------CCCTTCEEEECBTTTTBTT
T ss_pred cccHHHHHHHHHHHHhHHHhcC-----------------------CCcccCeEEEEEccCCCCc
Confidence 4433334444444443322111 01345688999999998 5
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.7e-17 Score=127.84 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=84.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC-CCchh-------h
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH-SRLRP-------K 132 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~-~~~~~-------~ 132 (267)
....++|+++|.+|||||||+|+|++.+.... ....+++...... ...... ......++++. ..... .
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~--~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLAR--TSKTPGRTQLINL-FEVADG-KRLVDLPGYGYAEVPEEMKRKWQRA 88 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEE-EEEETT-EEEEECCCCC------CCHHHHHHH
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCCceEe--ecccccceeeccc-eecccc-cceeeeecccccchhhhhhhhhhhh
Confidence 45678999999999999999999988753211 1111111111111 111111 12222222221 11110 1
Q ss_pred HHhh---hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024474 133 LDEF---LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 133 ~~~~---~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 209 (267)
.... ....+.++.+.+.... .......++..... ...++++++||+|+..........+.+.+.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~-- 158 (188)
T d1puia_ 89 LGEYLEKRQSLQGLVVLMDIRHP--LKDLDQQMIEWAVD------SNIAVLVLLTKADKLASGARKAQLNMVREAVLA-- 158 (188)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSC--CCHHHHHHHHHHHH------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG--
T ss_pred hhhhhhhhhheeEEEEeeccccc--chhHHHHHHHHhhh------ccccccchhhhhhccCHHHHHHHHHHHHHHHHh--
Confidence 1111 2233455555666553 23333444444333 567899999999987543333333333322221
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....+++++||++|. +++|+++|.+.+
T Consensus 159 ----------------------------~~~~~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 159 ----------------------------FNGDVQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp ----------------------------GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------------------------hCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence 1335678999999999 999999998764
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=2.9e-16 Score=131.29 Aligned_cols=171 Identities=20% Similarity=0.302 Sum_probs=112.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc--CCcccce------e----------eeeccccceeEeec---------ccCCCcc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQGT------V----------TSMEPNEDTFVLHS---------ESTKGKI 115 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~~------~----------~~~~~~~~~~~~~~---------~~~~~~~ 115 (267)
+.++|+|+|+.++|||||+.+|+. +...... . .|+..+...+.... ...+++.
T Consensus 16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 95 (341)
T d1n0ua2 16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 95 (341)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence 445799999999999999999962 1111000 0 01111111111111 1113456
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---CC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AH 192 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~~ 192 (267)
+.++++||||+.+|.......++-+|++|+|+|+.++ -.......+..... .+.|+++|+||+|... ..
T Consensus 96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eG--v~~qT~~~~~~a~~------~~~p~i~viNKiDr~~~el~~ 167 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG--VCVQTETVLRQALG------ERIKPVVVINKVDRALLELQV 167 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB--SCHHHHHHHHHHHH------TTCEEEEEEECHHHHHHTSCC
T ss_pred eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccC--cchhHHHHHHHHHH------cCCCeEEEEECcccccccHHh
Confidence 7899999999999999999999999999999999986 22333444444443 7899999999999643 35
Q ss_pred CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc
Q 024474 193 TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 253 (267)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 253 (267)
.+.++.+.+...+..++............. +.++...++ ++.+||+.|=
T Consensus 168 ~~~~~~~~l~~~i~~vn~~i~~~~~~~~~~----------~~~~P~~gn--V~FaSa~~g~ 216 (341)
T d1n0ua2 168 SKEDLYQTFARTVESVNVIVSTYADEVLGD----------VQVYPARGT--VAFGSGLHGW 216 (341)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCGGGCC----------CCCCGGGTC--EEEEETTTTE
T ss_pred hHHHHHHHHcCccccccceeeecccccccc----------cccCcccCc--eEecccccCe
Confidence 788889999988888876665433222111 123333444 5558999886
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.9e-16 Score=132.16 Aligned_cols=208 Identities=16% Similarity=0.161 Sum_probs=117.4
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCc
Q 024474 10 PEGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGST 89 (267)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~ 89 (267)
.+..++.+..-+..+.++++.++...+..... +..++..+. ....+.++|.|.|+||||||||+++|.....
T Consensus 8 ~~~~~~~~~g~~~~la~~it~vE~~~~~~~~~--~~~ll~~~~------~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 8 AESIRRLRQGERATLAQAMTLVESRHPRHQAL--STQLLDAIM------PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHG------GGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCCcccHHH--HHHHHHHhh------hccCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 34445555556889999999999876654432 333343332 1245788999999999999999999964211
Q ss_pred c---cceeeeeccccce---------------------eEeeccc-----------------CCCccccEEEEeCCCCCC
Q 024474 90 H---QGTVTSMEPNEDT---------------------FVLHSES-----------------TKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 90 ~---~~~~~~~~~~~~~---------------------~~~~~~~-----------------~~~~~~~~~l~DtpG~~~ 128 (267)
. .-.+.+.+|+... +...... .+..++.+.++.|.|...
T Consensus 80 ~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq 159 (327)
T d2p67a1 80 REGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQ 159 (327)
T ss_dssp HTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTT
T ss_pred hcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccchhhhhHHHHHHHhcCCCeEEEeeccccc
Confidence 1 1122223332110 0000000 000123566777776543
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
-. ..+...+|.+++|.++..+ +..+..+..+.++. =++|+||+|+............+...++.+
T Consensus 160 ~e---~~i~~~aD~~l~v~~P~~G-d~iq~~k~gi~e~a-----------Di~VvNKaD~~~~~~~~~~~~~~~~al~~~ 224 (327)
T d2p67a1 160 SE---TEVARMVDCFISLQIAGGG-DDLQGIKKGLMEVA-----------DLIVINKDDGDNHTNVAIARHMYESALHIL 224 (327)
T ss_dssp HH---HHHHTTCSEEEEEECC-------CCCCHHHHHHC-----------SEEEECCCCTTCHHHHHHHHHHHHHHHHHS
T ss_pred cc---hhhhhccceEEEEecCCCc-hhhhhhchhhhccc-----------cEEEEEeecccchHHHHHHHHHHHHHhhhc
Confidence 21 1355678999999998876 55555556665542 278999999875433333333333322221
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. . . .-.-..+++.|||++|+ +++|.+.|.++.
T Consensus 225 ~-------~-----------~-------~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 225 R-------R-----------K-------YDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp C-------C-----------S-------BTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred c-------c-----------C-------CCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 0 0 0 00123479999999999 999999998763
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=1.3e-15 Score=130.95 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=68.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHh----
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDE---- 135 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---- 135 (267)
....+|+|+|.+|+|||||+|+|++...... ..+...+++.+..... ......+.+|||||..........
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~---~~~~~~~~l~DtPG~~~~~~~~~~~~~~ 130 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK---HPNIPNVVFWDLPGIGSTNFPPDTYLEK 130 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE---CSSCTTEEEEECCCGGGSSCCHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee---ccCCCeEEEEeCCCcccccccHHHHHHH
Confidence 4568999999999999999999998543221 1222222222222111 112236899999997654333232
Q ss_pred -hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 136 -FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 136 -~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.+..+|.+|++.|..-. +.-...+..+.. .++|+++|.||+|..
T Consensus 131 ~~~~~~d~~l~~~~~~~~----~~d~~l~~~l~~------~~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 131 MKFYEYDFFIIISATRFK----KNDIDIAKAISM------MKKEFYFVRTKVDSD 175 (400)
T ss_dssp TTGGGCSEEEEEESSCCC----HHHHHHHHHHHH------TTCEEEEEECCHHHH
T ss_pred hhhhcceEEEEecCCCCC----HHHHHHHHHHHH------cCCCEEEEEeCcccc
Confidence 35568888888774322 112222222322 678999999999953
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.59 E-value=2.2e-15 Score=125.44 Aligned_cols=208 Identities=15% Similarity=0.157 Sum_probs=116.5
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCc
Q 024474 10 PEGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGST 89 (267)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~ 89 (267)
.+..++.+..-+..++++++.++...+.... .+..++..+. ....+.++|.|.|+||+|||||+++|.....
T Consensus 5 ~~l~~~~~~g~~~~lar~it~~E~~~~~~~~--~~~~~~~~~~------~~~~~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 5 DTLRERLLAGDRAALARAITLAESRRADHRA--AVRDLIDAVL------PQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTCSSHHHHH--HHHHHHHHHG------GGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCCchhHH--HHHHHHHHhh------hccCCceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence 3344555555688999999999987665432 2222333221 1245788999999999999999999874211
Q ss_pred ---ccceeeeeccccce---------------------eEeeccc-----------------CCCccccEEEEeCCCCCC
Q 024474 90 ---HQGTVTSMEPNEDT---------------------FVLHSES-----------------TKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 90 ---~~~~~~~~~~~~~~---------------------~~~~~~~-----------------~~~~~~~~~l~DtpG~~~ 128 (267)
..-.+...+|.... +...... .+..++.+.|+.|.|...
T Consensus 77 ~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq 156 (323)
T d2qm8a1 77 AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQ 156 (323)
T ss_dssp HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred hcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhh
Confidence 11122222221110 0000000 011235677888887654
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDK 207 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~ 207 (267)
-.. .....+|..++|..+..+ +..+..+.-+.++. =++|+||+|+.+..... .........++.
T Consensus 157 ~e~---~~~~~~D~~v~v~~p~~G-D~iQ~~k~gilE~a-----------Di~vvNKaD~~~~~~~~~~~~~~~~~~l~~ 221 (323)
T d2qm8a1 157 SET---AVADLTDFFLVLMLPGAG-DELQGIKKGIFELA-----------DMIAVNKADDGDGERRASAAASEYRAALHI 221 (323)
T ss_dssp CHH---HHHTTSSEEEEEECSCC-------CCTTHHHHC-----------SEEEEECCSTTCCHHHHHHHHHHHHHHHTT
T ss_pred hhh---hhhcccceEEEEeeccch-hhhhhhhhhHhhhh-----------heeeEeccccccchHHHHHHHHHHHHHhhc
Confidence 322 233458999999999887 45555554444432 28999999987553221 111111211110
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. -.......+++.+||++|+ +++|.++|.++.
T Consensus 222 -------~~------------------~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 222 -------LT------------------PPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp -------BC------------------CSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -------cc------------------ccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 00 0000224478999999999 999999998763
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.52 E-value=1.2e-14 Score=116.41 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=72.6
Q ss_pred ccEEEEeCCCCCCchhhHHh---hh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDE---FL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~---~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
..+.++|+||+.++...... .. ...+.+++++|+....+........+...... .....|.++|+||+|+..
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~---~~~~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID---LRLGATTIPALNKVDLLS 171 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH---HHHTSCEEEEECCGGGCC
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHH---HHhCCCceeeeecccccc
Confidence 45899999999765333221 12 23568999999876422122211222111111 014678999999999987
Q ss_pred CCCHHHHHHHHH---HHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 191 AHTKEFIRKQME---KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 191 ~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
...........+ .....+........ ..... ......+....++++++||++|+ +++|+++|.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 172 EEEKERHRKYFEDIDYLTARLKLDPSMQG--LMAYK-------MCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHH--HHHHH-------HHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHH-------HHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 654443332221 11111111100000 00000 00001112456788999999999 99999999985
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.50 E-value=1.1e-13 Score=111.81 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=76.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------H
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-------L 133 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-------~ 133 (267)
.....+|+++|.+|+|||||+|.|++.... .++...+++..........++ ..+.++||||..+.... .
T Consensus 29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~--~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i 104 (257)
T d1h65a_ 29 DVNSLTILVMGKGGVGKSSTVNSIIGERVV--SISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNII 104 (257)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCS--CCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHH
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhCCCce--eecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHH
Confidence 357789999999999999999999987642 222233333333333333344 57999999997542211 1
Q ss_pred Hhh--hccCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 134 DEF--LPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 134 ~~~--~~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..+ ....|+++||++++.. ..........+..++.. ..-.++++|+||+|...+
T Consensus 105 ~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~----~~~~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 105 KSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK----GIWNKAIVALTHAQFSPP 162 (257)
T ss_dssp HHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG----GGGGGEEEEEECCSCCCG
T ss_pred HHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch----hhhhCEEEEEECcccCCc
Confidence 112 2356899999988753 11223334444444432 133579999999998754
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.12 E-value=4.2e-10 Score=92.73 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=43.1
Q ss_pred cEEEEeCCCCCCc-------------hhhHHhhhccCCEEEEEE-eCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 024474 117 PVHLVDVPGHSRL-------------RPKLDEFLPQAAGIVFVV-DALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182 (267)
Q Consensus 117 ~~~l~DtpG~~~~-------------~~~~~~~~~~~d~ii~v~-d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv 182 (267)
.+.++||||.... ......|+..++.+++++ ++... -.......+...+- ....++++|
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~-~~~~~~~~~~~~~~------~~~~r~i~V 204 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD-LANSDALQLAKEVD------PEGKRTIGV 204 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC-STTCSHHHHHHHHC------SSCSSEEEE
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccc-ccccHHHHHHHHhC------cCCCeEEEE
Confidence 5889999997642 234567888999866665 44432 12223334443332 245689999
Q ss_pred EecCCCCCCC
Q 024474 183 CNKTDKVTAH 192 (267)
Q Consensus 183 ~nK~Dl~~~~ 192 (267)
+||+|.....
T Consensus 205 itk~D~~~~~ 214 (306)
T d1jwyb_ 205 ITKLDLMDKG 214 (306)
T ss_dssp EECTTSSCSS
T ss_pred Eeccccccch
Confidence 9999987553
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=8.1e-10 Score=90.63 Aligned_cols=123 Identities=17% Similarity=0.157 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc-ccceeeee-ccccceeEe------eccc------------------------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGST-HQGTVTSM-EPNEDTFVL------HSES------------------------ 110 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~-~~~~~~~~-~~~~~~~~~------~~~~------------------------ 110 (267)
..++|+|+|..++|||||+|+|++..+ +.+..++. .++.-.+.. ....
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 566899999999999999999999875 32221111 010000000 0000
Q ss_pred ---------------CCCccccEEEEeCCCCCCc-------------hhhHHhhhccCCEE-EEEEeCCCCCCchHHHHH
Q 024474 111 ---------------TKGKIKPVHLVDVPGHSRL-------------RPKLDEFLPQAAGI-VFVVDALEFLPNCSAASE 161 (267)
Q Consensus 111 ---------------~~~~~~~~~l~DtpG~~~~-------------~~~~~~~~~~~d~i-i~v~d~~~~~~~~~~~~~ 161 (267)
.......+.++||||.... ..+...|+...+.+ ++|.++... -.......
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~-~~~~~~~~ 183 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDALK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC-GGGCHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccc-hhhhHHHH
Confidence 0001135889999997532 23355677777755 455555543 22334444
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 162 YLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 162 ~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
+...+- ....++++|+||+|.....
T Consensus 184 ~~~~~~------~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 184 IAKEVD------PQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHC------TTCSSEEEEEECGGGSCTT
T ss_pred HHHHhC------cCCCceeeEEeccccccch
Confidence 444432 2567899999999987653
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.97 E-value=5e-10 Score=91.01 Aligned_cols=88 Identities=22% Similarity=0.312 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeeccc-------CCCcc---ccEEEEeCCCCCCchh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES-------TKGKI---KPVHLVDVPGHSRLRP 131 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~l~DtpG~~~~~~ 131 (267)
..+|.++|.||||||||+|++++.....+ ..+|+.|+.+...+.... ++++. ..++++|.||.-.-.+
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 36999999999999999999998764222 234556665554432111 01111 2588999999764322
Q ss_pred -------hHHhhhccCCEEEEEEeCCC
Q 024474 132 -------KLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 132 -------~~~~~~~~~d~ii~v~d~~~ 151 (267)
..-++++++|+++.|+|+..
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cCCCccHHHHHHHHhccceEEEeeccC
Confidence 24567899999999999753
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.93 E-value=5.9e-10 Score=92.41 Aligned_cols=87 Identities=23% Similarity=0.255 Sum_probs=45.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeE-eeccc-------CC---------CccccEEEEeCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFV-LHSES-------TK---------GKIKPVHLVDVPG 125 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~-~~~~~-------~~---------~~~~~~~l~DtpG 125 (267)
.+|+++|.||||||||+|+|++.+...+. -+|+.|+.+... ..... +. .....++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 37999999999999999999986542211 123333322111 11000 00 1124699999999
Q ss_pred CCCchh----hHH---hhhccCCEEEEEEeCCC
Q 024474 126 HSRLRP----KLD---EFLPQAAGIVFVVDALE 151 (267)
Q Consensus 126 ~~~~~~----~~~---~~~~~~d~ii~v~d~~~ 151 (267)
.-...+ ... ..++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 754221 122 35678999999999864
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.90 E-value=6.4e-10 Score=91.22 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=62.4
Q ss_pred hhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---cceeeeeccccceeEeecccC-------C---CccccEEEEeCCC
Q 024474 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTVTSMEPNEDTFVLHSEST-------K---GKIKPVHLVDVPG 125 (267)
Q Consensus 59 ~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~l~DtpG 125 (267)
.|.....+|+++|.||||||||+|++++.... ...-+|+.|+.+...++.... . .....++++|.||
T Consensus 5 ~~~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaG 84 (296)
T d1ni3a1 5 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 84 (296)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccc
Confidence 34567789999999999999999999976431 112345566555443321100 0 0113689999998
Q ss_pred CCCc-------hhhHHhhhccCCEEEEEEeCCC
Q 024474 126 HSRL-------RPKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 126 ~~~~-------~~~~~~~~~~~d~ii~v~d~~~ 151 (267)
...- ....-..++.+|+++.|+|+.+
T Consensus 85 Lv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 85 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 5432 2346677899999999999865
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.88 E-value=8e-10 Score=89.52 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=37.6
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
......+++|+|.||||||||+|+|.+.+. ..+...+..+.. ......+ -.+.++||||..
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~--~~~~~~pG~Tr~--~~~i~~~---~~~~l~DTPGi~ 168 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNI--AKTGDRPGITTS--QQWVKVG---KELELLDTPGIL 168 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCC--C--------------CCEEET---TTEEEEECCCCC
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccce--EEECCccccccc--ceEEECC---CCeEEecCCCcc
Confidence 345678999999999999999999998753 123323322222 2222212 369999999975
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.58 E-value=2.9e-08 Score=77.07 Aligned_cols=65 Identities=26% Similarity=0.282 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-cceeeeeccccc--eeEeecccCCCccccEEEEeCCCCCCch
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNED--TFVLHSESTKGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 130 (267)
+....+++|++|||||||+|+|.++... .+.++.....+. +.........+ .-.++||||..++.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~---gg~iiDTPG~r~~~ 161 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF---GGYVVDTPGFANLE 161 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT---SCEEESSCSSTTCC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC---CcEEEeCCcccccc
Confidence 3458899999999999999999875422 112221111111 11111112222 24699999987653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.30 E-value=7.2e-08 Score=75.01 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
+....+++|++|||||||+|+|.++.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred ccceEEEECCCCccHHHHHHhhccHh
Confidence 45578999999999999999998864
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.25 E-value=6e-07 Score=72.17 Aligned_cols=87 Identities=22% Similarity=0.275 Sum_probs=57.4
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
.....+..+|+||+|+|+..+..+.. ..+.+++ .++|+++|+||+|+.+....+.+.+.++
T Consensus 8 ~i~~~i~~~DvIl~V~DaR~P~ss~~---~~l~~~~-------~~Kp~IlVlNK~DLv~~~~~~~w~~~f~--------- 68 (273)
T d1puja_ 8 EVTEKLKLIDIVYELVDARIPMSSRN---PMIEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHFE--------- 68 (273)
T ss_dssp HHHHHGGGCSEEEEEEETTSTTTTSC---HHHHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHHH---------
T ss_pred HHHHHHHhCCEEEEEEECCCCCCCCC---HHHHHHH-------cCCCeEEEEECccCCchHHHHHHHHHHH---------
Confidence 45668899999999999988643332 2333333 3679999999999986543333333222
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.....++.+||+++. ...+.+++.+.
T Consensus 69 ---------------------------~~~~~~i~isa~~~~~~~~~~~~~~~~ 95 (273)
T d1puja_ 69 ---------------------------NQGIRSLSINSVNGQGLNQIVPASKEI 95 (273)
T ss_dssp ---------------------------TTTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred ---------------------------hcCCccceeecccCCCccccchhhhhh
Confidence 122356788999988 77676665543
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=4.5e-06 Score=64.75 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+-.+|.|..|||||||+++++..
T Consensus 3 iPv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 3 IAVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCEEEEeeCCCCCHHHHHHHHHhc
Confidence 456889999999999999999864
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.23 E-value=1.1e-06 Score=67.98 Aligned_cols=88 Identities=11% Similarity=0.195 Sum_probs=60.0
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
..+.|.+++|+.+.++.-+...+..++..... .++|.++|+||+||....... .+.......
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~------~~i~pvIvlnK~DL~~~~~~~----~~~~~~~~~-------- 69 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK------NELETVMVINKMDLYDEDDLR----KVRELEEIY-------- 69 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH------TTCEEEEEECCGGGCCHHHHH----HHHHHHHHH--------
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------cCCCEEEEEeCcccCCHHHHH----HHHHhhccc--------
Confidence 46789999999987754456666666654443 789999999999997532221 222222211
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
....+++.+||++|+ +++|.++|..+
T Consensus 70 ----------------------~~~~~v~~vSa~~~~g~~~L~~~l~~k 96 (225)
T d1u0la2 70 ----------------------SGLYPIVKTSAKTGMGIEELKEYLKGK 96 (225)
T ss_dssp ----------------------TTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred ----------------------ccceeEEEeccccchhHhhHHHHhcCC
Confidence 122467889999999 99999988654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.20 E-value=6.5e-06 Score=62.88 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=39.7
Q ss_pred ccEEEEeCCCCCCchhh----HHhh---h-----ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 024474 116 KPVHLVDVPGHSRLRPK----LDEF---L-----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~----~~~~---~-----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~ 183 (267)
+.+.++||||...+... +..+ . ...+-+++|+|++...+........+..+ . +-=+++
T Consensus 89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~---------~~~lI~ 158 (207)
T d1okkd2 89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-G---------LTGVIV 158 (207)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-C---------CSEEEE
T ss_pred CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-C---------CceEEE
Confidence 57899999996644332 1111 1 13467899999988634444444433322 1 114789
Q ss_pred ecCCCCCC
Q 024474 184 NKTDKVTA 191 (267)
Q Consensus 184 nK~Dl~~~ 191 (267)
||.|....
T Consensus 159 TKlDet~~ 166 (207)
T d1okkd2 159 TKLDGTAK 166 (207)
T ss_dssp ECTTSSCC
T ss_pred eccCCCCC
Confidence 99997543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.19 E-value=1.1e-06 Score=68.15 Aligned_cols=89 Identities=13% Similarity=0.212 Sum_probs=58.7
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
..+.|.+++|+++.++.-+...+..++.-... .+++.++|+||+||..+... .+.++.....+.
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~------~~i~pvIvlnK~DL~~~~~~---~~~~~~~~~~y~------- 71 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------NDIQPIICITKMDLIEDQDT---EDTIQAYAEDYR------- 71 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------TTCEEEEEEECGGGCCCHHH---HHHHHHHHHHHH-------
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH------cCCCEEEEEecccccccHHH---HHHHHHHHHHHh-------
Confidence 46789999999987764566667766654433 78899999999999865332 222222222211
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++++.+||++|+ +++|.++|..
T Consensus 72 ----------------------~~g~~v~~~Sa~~~~gl~~L~~~l~~ 97 (231)
T d1t9ha2 72 ----------------------NIGYDVYLTSSKDQDSLADIIPHFQD 97 (231)
T ss_dssp ----------------------HHTCCEEECCHHHHTTCTTTGGGGTT
T ss_pred ----------------------hccccceeeecCChhHHHHHHHhhcc
Confidence 113467888888888 8888777654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=3.3e-06 Score=64.84 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=19.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
.+...|+++|++||||||.+-+|.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344568899999999999987775
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.99 E-value=6.7e-06 Score=62.86 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=38.0
Q ss_pred ccEEEEeCCCCCCchhhHH----hh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLD----EF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.++||+|......... .+ ....+-+++|.|++.+.+....... +.+.+. . -=+++||.|..
T Consensus 93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~-f~~~~~--------~-~~~I~TKlDe~ 162 (207)
T d1ls1a2 93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA-FDEKVG--------V-TGLVLTKLDGD 162 (207)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH-HHHHTC--------C-CEEEEECGGGC
T ss_pred CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHH-HHhhCC--------C-CeeEEeecCcc
Confidence 5789999999665433211 12 2356889999999876222222222 222211 1 13889999965
Q ss_pred C
Q 024474 190 T 190 (267)
Q Consensus 190 ~ 190 (267)
.
T Consensus 163 ~ 163 (207)
T d1ls1a2 163 A 163 (207)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=1.7e-05 Score=60.60 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q 024474 64 STTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
..-|+++|++||||||.+-+|.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3457789999999999998875
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.91 E-value=2.6e-05 Score=59.62 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=36.9
Q ss_pred ccEEEEeCCCCCCchh------hHHhh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRP------KLDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~------~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
+.+.++||||...+.. ....+ .-..+-+++|+|++...+.......... . .+. -=+++||.|
T Consensus 95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~-~--------~~~-~~lI~TKlD 164 (211)
T d1j8yf2 95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQ-A--------SKI-GTIIITKMD 164 (211)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH-H--------CTT-EEEEEECTT
T ss_pred CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhc-c--------cCc-ceEEEeccc
Confidence 5799999999643321 11111 2235788999999875233332222221 1 222 247799999
Q ss_pred CCC
Q 024474 188 KVT 190 (267)
Q Consensus 188 l~~ 190 (267)
...
T Consensus 165 et~ 167 (211)
T d1j8yf2 165 GTA 167 (211)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=3.4e-05 Score=61.61 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeecc-ccceeEeecccCCCccccEEEEeCCCCCCchhh--------H
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP-NEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------L 133 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~ 133 (267)
+..-|.|+|+.++|||+|+|.|.+....-....+..+ |.+-+.......++....+.++||.|....... .
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~i~ 110 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF 110 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHHHH
Confidence 4457899999999999999999986632111122222 233333333333555668999999997643211 1
Q ss_pred HhhhccCCEEEEEEeCC
Q 024474 134 DEFLPQAAGIVFVVDAL 150 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~ 150 (267)
.-.+--++.+||=....
T Consensus 111 ~l~~llSs~~i~N~~~~ 127 (277)
T d1f5na2 111 ALAVLLSSTFVYNSIGT 127 (277)
T ss_dssp HHHHHHCSEEEEEEESC
T ss_pred HHHHHHhCEEEEecccc
Confidence 11122367776665544
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.57 E-value=1.8e-05 Score=58.52 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.||+++|++|+|||||++.+++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 38999999999999999998863
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.47 E-value=3.5e-05 Score=56.60 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..+|+++|+|||||||+.+.|...
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 467889999999999999999999763
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.40 E-value=3.8e-05 Score=56.24 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++|+++|+|||||||+.+.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.37 E-value=3.6e-05 Score=56.94 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+|+|.|++|+|||||+++|...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999763
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=5.1e-05 Score=55.38 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+-++|+|++|||||||+++|..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.32 E-value=7.1e-05 Score=56.04 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+++.+|+++|+|||||||....|..
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999875
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.16 E-value=0.00011 Score=52.71 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
-|++.|+|||||||+.++|...
T Consensus 4 lIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3788999999999999998653
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.15 E-value=0.00014 Score=54.52 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+..+|+++|+|||||||+...|...
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 357789999999999999999999864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.12 E-value=0.00012 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+...|+|+|+|||||||+..+|...
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44557899999999999999999753
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.11 E-value=0.00014 Score=54.40 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++.+|+++|+|||||||+...|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.07 E-value=0.00031 Score=55.18 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=22.0
Q ss_pred hcCCCCE-EEEEcCCCCCHHHHHHHHHcC
Q 024474 60 RRKKSTT-IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 60 ~~~~~~~-i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....++ |++.|+||+|||||...+.+.
T Consensus 27 ~~~~~P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 27 KAVESPTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3333344 889999999999999999764
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.05 E-value=0.00017 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+|+|+|+|||||||+...|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998865
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.04 E-value=0.00018 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..++..|.++|.|||||||+...|..
T Consensus 3 ~~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 3 ATQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999988864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.01 E-value=0.00017 Score=52.48 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
-|++.|+|||||||+.++|...
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00021 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..|+++|++||||||+...|...
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.96 E-value=0.00022 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+|+++|+|||||||+...|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988753
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.95 E-value=0.00023 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+|+++|+|||||||+...|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999998753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.95 E-value=0.00026 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+|+++|+|||||||+...|...
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.95 E-value=0.0002 Score=52.29 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++|+++|++||||||+.+.|..
T Consensus 2 p~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999888754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.00021 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..|+|.|++|+|||||+..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999998864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.92 E-value=0.00026 Score=51.54 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
-+.|+|.+|||||||+++|+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999999875
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00029 Score=51.97 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+|+++|+|||||||....|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998865
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.87 E-value=0.017 Score=43.71 Aligned_cols=68 Identities=9% Similarity=0.052 Sum_probs=46.8
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVTAH 192 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~ 192 (267)
.+.+.++|+|+... ......+..+|.++++...+. .++....+.+..+.+ .+.|++ +|+||.|.....
T Consensus 111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~~--~s~~~~~~~~~~~~~------~~~~~~giv~N~~~~~~~~ 179 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEI--SCLTDTMKVGIVLKK------AGLAILGFVLNRYGRSDRD 179 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCH--HHHHHHHHHHHHHHH------TTCEEEEEEEEEETSCTTC
T ss_pred cCCEEEEccccccc--ccchhhhhhhhcccccccccc--eecchhhHHHHHHhh------hhhhhhhhhhcccccccch
Confidence 46899999998654 344456778999999998764 345666555544433 556765 899999865443
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.86 E-value=0.0011 Score=51.11 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+.+++.||||+||||+.+.+...
T Consensus 32 ~~~~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 32 GEVLDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp TCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHhc
Confidence 344568999999999999999998753
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.84 E-value=0.00028 Score=53.25 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=28.3
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
+...++.++++|+... ......++.++... .+.+++++.++++
T Consensus 81 ~~~~~~~~vi~d~~~~---~~~~r~~~~~~~~~-----~~~~~~~~~~~~~ 123 (213)
T d1bifa1 81 LSEEGGHVAVFDATNT---TRERRAMIFNFGEQ-----NGYKTFFVESICV 123 (213)
T ss_dssp HHTTCCSEEEEESCCC---SHHHHHHHHHHHHH-----HTCEEEEEEECCC
T ss_pred HHhcCCCEEEeecCCc---cHHHHHHHHHHHHh-----cCCeEEEEEeecc
Confidence 3445667788999875 45555566666553 5567788878775
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.83 E-value=0.00039 Score=51.17 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..-|+++|.|||||||+..++..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999865
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.00048 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+.-|+++||+|||||||+++|+..
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.00038 Score=54.11 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-+++|+|++|||||||++.+.+-.
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456689999999999999999998753
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.73 E-value=0.00039 Score=51.13 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
-|+|.|++||||||+++.|..
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998853
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.00039 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+...|+++|+|||||||+...|...
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45567999999999999999999763
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.70 E-value=0.00038 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+++-.
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 25 EKGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhccc
Confidence 355579999999999999999998853
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00044 Score=51.63 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+.|+|+|+|||||||....|..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.69 E-value=0.0005 Score=53.85 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-+++|+|++|||||||++.|.+-.
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhccc
Confidence 456689999999999999999998743
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=96.68 E-value=0.00045 Score=53.71 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456689999999999999999997743
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.66 E-value=0.00047 Score=51.32 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
|+|+||+|||||||+++|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999764
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00055 Score=53.51 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++|+|+.|||||||++.+.+-.
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 566789999999999999999988754
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.65 E-value=0.0025 Score=51.60 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=43.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+.+|+|+|++||||||+++.|+..-.+...+.++..+ ..+.. ... ..+.-+...+...+.......++..--.
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~-~El~l-----~~~-~~~~~~~~~~~~~~~~ll~~~lR~~pd~ 238 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT-EEIVF-----KHH-KNYTQLFFGGNITSADCLKSCLRMRPDR 238 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS-CCCCC-----SSC-SSEEEEECBTTBCHHHHHHHHTTSCCSE
T ss_pred CCCEEEEeeccccchHHHHHHhhhcccccceeeccch-hhhhc-----ccc-cccceeccccchhHHHHHHHHhccCCCc
Confidence 3479999999999999999998754333333333221 11111 111 1233445555556666677777654334
Q ss_pred EEE
Q 024474 144 VFV 146 (267)
Q Consensus 144 i~v 146 (267)
|+|
T Consensus 239 iiv 241 (323)
T d1g6oa_ 239 IIL 241 (323)
T ss_dssp EEE
T ss_pred ccC
Confidence 444
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.65 E-value=0.0012 Score=48.93 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=20.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....-|+|.|++|||||||.++|..
T Consensus 20 ~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4445688999999999999999864
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.65 E-value=0.00059 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.-|++.|++||||||+.+.|...
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999998764
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.63 E-value=0.00051 Score=49.83 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|+++|++||||||+...|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988854
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.63 E-value=0.00061 Score=54.20 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++|+|+.|+|||||++.+.+-.
T Consensus 60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 60 EKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 567789999999999999999998754
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0007 Score=52.14 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 24 HEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 455689999999999999999988754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.00058 Score=49.57 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...-++++|++||||||+.+.|...
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445778999999999999998753
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.0006 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.-|+++||+|||||||++.|...
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 45889999999999999999764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.57 E-value=0.0006 Score=52.66 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.||||+||||+++.+.+.
T Consensus 33 ~~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 33 EPLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp SCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998763
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.57 E-value=0.00073 Score=50.46 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+...|+++|+|||||||+..+|...
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4456889999999999999999764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.56 E-value=0.0014 Score=50.19 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+.+.+++.|++|+||||+++.+...
T Consensus 43 ~~~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 43 GSMPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999988763
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.56 E-value=0.00071 Score=52.04 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCcchhhHhccCCC
Confidence 456689999999999999999887743
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.53 E-value=0.00084 Score=51.89 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 30 KDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 455679999999999999999998854
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.53 E-value=0.00064 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999998854
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.00031 Score=52.24 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|.++|+|||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 355788999999999999999864
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.51 E-value=0.00087 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
-|++.|++||||||+.+.|...
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4777799999999999998764
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0014 Score=48.86 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++...+++++|+||+|||+++..|...
T Consensus 40 r~~k~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 40 RRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCCeEEEecCCcccHHHHHHHHHH
Confidence 445668999999999999999988753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00079 Score=49.73 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
-|+++||+|+||+||+++|...
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999854
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.43 E-value=0.0008 Score=50.19 Aligned_cols=21 Identities=43% Similarity=0.689 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
|+|+||+|||||||.++|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999998653
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.37 E-value=0.00062 Score=53.28 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-+++|+|++|||||||++.+.+-.
T Consensus 42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 466799999999999999999887643
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0011 Score=51.33 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++--++++|++|||||||++.+.+-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 455679999999999999999998753
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=96.35 E-value=0.0011 Score=51.34 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 27 ~~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 355689999999999999999998754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.33 E-value=0.0029 Score=49.16 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....+++.|+||+|||++++.+..
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999998875
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.33 E-value=0.00097 Score=49.08 Aligned_cols=20 Identities=20% Similarity=0.634 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 024474 67 IVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~ 86 (267)
|+|.|.+||||||+++.|..
T Consensus 4 ivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998853
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.32 E-value=0.001 Score=51.54 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++--++++|+.|+|||||++.+.+-.
T Consensus 30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455679999999999999999998854
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.31 E-value=0.0011 Score=48.43 Aligned_cols=21 Identities=29% Similarity=0.418 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|+++|++||||||+.+.|..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998854
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0018 Score=50.86 Aligned_cols=27 Identities=33% Similarity=0.403 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+....+++++|+||+|||+++..|...
T Consensus 36 r~~k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 36 RRRKNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCccCCcEEECCCCCcHHHHHHHHHHH
Confidence 345678999999999999999988653
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.28 E-value=0.0021 Score=49.63 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST 89 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~ 89 (267)
.++-.++++|+.|+|||||++.+.+-..
T Consensus 26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~ 53 (238)
T d1vpla_ 26 EEGEIFGLIGPNGAGKTTTLRIISTLIK 53 (238)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4556789999999999999999988643
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.27 E-value=0.0026 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+...|++.||||+|||++++.+.+
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 445699999999999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.00086 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++--++++|+.|+|||||++.+.+-
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45567999999999999999999884
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=96.25 E-value=0.00094 Score=51.24 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++--++++|+.|||||||++.+.+-.
T Consensus 24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 455579999999999999999998854
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.23 E-value=0.0017 Score=49.08 Aligned_cols=27 Identities=44% Similarity=0.626 Sum_probs=23.6
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..++.-|.+.|.|||||||+.+.|..
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 356788899999999999999998864
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.0025 Score=48.48 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+...+++.||+|+||||+++.+..
T Consensus 33 ~~~~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 33 DGNMPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp SCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCCchhhHHHHHH
Confidence 44556799999999999999998764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.14 E-value=0.0017 Score=50.82 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 26 RAGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 456689999999999999999998743
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0015 Score=49.34 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++-|+|.|++||||||+.+.|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998854
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.002 Score=49.27 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=22.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+...+++.||+|+||||+++.++..
T Consensus 30 ~~~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 30 SANLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCChHHHHHHHHHH
Confidence 344456999999999999999988753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.08 E-value=0.0025 Score=49.49 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.||||+|||++++.+...
T Consensus 40 ~~~~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 40 RIPKGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCChhHHHHHHHHH
Confidence 34456999999999999999999863
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.0033 Score=47.77 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+.+.+++.|++|+||||++..++..
T Consensus 33 ~~~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 33 GKLPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCChhHHHHHHHHH
Confidence 34557999999999999999998763
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.0018 Score=50.11 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.||||+||||++..+...
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999874
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.08 E-value=0.0022 Score=50.15 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.||||+|||++++.+...
T Consensus 36 ~~~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 36 KPPRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCceeEEecCCCCCchHHHHHHHHH
Confidence 34557999999999999999998874
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.06 E-value=0.0016 Score=50.84 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++--++++|+.|||||||++.+.+-.
T Consensus 28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 28 NKGDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 345578999999999999999998864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.05 E-value=0.00099 Score=51.54 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 456689999999999999999998854
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.01 E-value=0.0015 Score=48.68 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+..-|+|-|..||||||+++.|...
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 345568999999999999999998753
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.00 E-value=0.0029 Score=49.44 Aligned_cols=20 Identities=30% Similarity=0.127 Sum_probs=16.8
Q ss_pred EEEcCCCCCHHHHHHHHHcC
Q 024474 68 VLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 68 ~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+.|+||+|||++++.+...
T Consensus 50 ~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHH
T ss_pred EeECCCCCCHHHHHHHHHHH
Confidence 44699999999999998753
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.98 E-value=0.0024 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..+|+|-|||||||||....|..
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346788889999999999998865
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.98 E-value=0.0019 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+...++++||||+|||.|.+++...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhc
Confidence 4567999999999999999998763
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.92 E-value=0.0031 Score=49.07 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....++|.|++|+|||||+.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 445788999999999999998865
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.0045 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
.+..+-|+|.|++||||||+.+.|.
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 3556789999999999999988774
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.87 E-value=0.0099 Score=42.53 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+++.-|++-|+-|||||||++.++..
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhh
Confidence 34557889999999999999998764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.0025 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....+++.||||+|||++++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHH
Confidence 345699999999999999999975
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0034 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+-|+|.|||||||||+...|...
T Consensus 4 piI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46888899999999999988753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.62 E-value=0.0034 Score=46.40 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-|+|.|.+||||||+.+.|...
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3457889999999999999988654
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=95.59 E-value=0.0058 Score=50.57 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++...+++++|+||||||+++..|..
T Consensus 40 r~~k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 40 RRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred cCCCCCCeEECCCCCCHHHHHHHHHH
Confidence 45666789999999999999976654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.53 E-value=0.0096 Score=50.16 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+|+++||+|||||-|.++|..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 44899999999999999999865
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0031 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....+++.|++|+||||++..+..
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999998865
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.41 E-value=0.0049 Score=48.31 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....|++.|++|+|||+|++.+.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHH
Confidence 34557999999999999999999874
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.22 E-value=0.0048 Score=46.07 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
-|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0064 Score=45.80 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=19.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++.-|+|-|+.||||||++..|..
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 455688889999999998877643
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=95.19 E-value=0.0088 Score=41.91 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=14.3
Q ss_pred EEEEcCCCCCHHH-HHHHH
Q 024474 67 IVLAGLSGSGKTV-LFYQL 84 (267)
Q Consensus 67 i~i~G~~~~GKSs-Ll~~l 84 (267)
-+++||..||||| |+.++
T Consensus 5 ~~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEEccccCHHHHHHHHHH
Confidence 3689999999999 55554
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.19 E-value=0.017 Score=45.56 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=20.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
..+.+-|+|.|++|||||||...|.
T Consensus 24 ~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 24 NKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEeECCCCCCHHHHHHHHH
Confidence 3455678899999999999987663
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.007 Score=45.40 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+.-|+|-|..||||||+++.|..
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999998764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.11 E-value=0.0066 Score=49.80 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++...+++.||||+|||++.+.+.+
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHH
Confidence 5556899999999999999999875
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.10 E-value=0.018 Score=42.77 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++...+++.||+++|||.+.+.|+.
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCccHHHHHHHHHH
Confidence 45667899999999999999998765
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.06 E-value=0.021 Score=46.76 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+..+++++||+|||||-|..+|..
T Consensus 66 ~p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 66 LSKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcceeeeCCCCccHHHHHHHHHh
Confidence 3556799999999999999998864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0042 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...|+|-|+.||||||+++.|...
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.016 Score=46.41 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++++||+|+|||.|...|..
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 689999999999999998764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.0099 Score=44.17 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+++.-+.|.|+||+|||+|...+...
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 46678999999999999999988754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.46 E-value=0.0064 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=17.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
+.+-|+|.|.+||||||+.++|.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 45679999999999999998764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.43 E-value=0.027 Score=46.71 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=22.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+.--|++.|++|+||||.++.++..
T Consensus 155 ~~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 155 KRPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhhceEEEEcCCCCCccHHHHHHhhh
Confidence 345567999999999999999998763
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.022 Score=42.59 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...+++.|++|+||||++..+..
T Consensus 24 ~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 24 HHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 33499999999999999997765
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.011 Score=44.87 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+++.-+.|.|+||+|||+|...+...
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46678999999999999999988754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.011 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
+-|+|.|.+||||||..+.|....
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~G 27 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADLG 27 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEECCCcCCHHHHHHHHHHCC
Confidence 368899999999999999886543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.25 E-value=0.028 Score=44.02 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....-|+|.|.+|+|||||...+.+
T Consensus 42 ~~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 42 LDSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3455688999999999999998764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.11 E-value=0.017 Score=43.13 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+-|+|.|..||||||+.+.|...
T Consensus 3 ~iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 45889999999999999988643
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.033 Score=42.51 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+++.|++|+||||++..+..
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999988754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.95 E-value=0.017 Score=42.10 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+.-|++.|++|+||||+.-.|....
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 34569999999999999999988654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.0029 Score=46.78 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 024474 67 IVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~ 85 (267)
.+|+|+.|+||||++.+|.
T Consensus 27 tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4578999999999999873
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.89 E-value=0.018 Score=41.96 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+.-+++.|++|+||||+...|....
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 34568999999999999999988754
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=93.78 E-value=0.11 Score=36.18 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=17.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
.+.--+++||..|||||-+-+..
T Consensus 6 ~G~l~lI~GpMfSGKTteLi~~~ 28 (141)
T d1xx6a1 6 HGWVEVIVGPMYSGKSEELIRRI 28 (141)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceeEEEEEeccccHHHHHHHHHH
Confidence 44556789999999999765544
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.75 E-value=0.017 Score=44.17 Aligned_cols=26 Identities=31% Similarity=0.202 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+.+.-++|.|+||+|||+|..+++..
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 46668999999999999999988753
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.74 E-value=0.02 Score=43.56 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+++.-++|.|+||+|||+|+.++...
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46678999999999999999988654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.60 E-value=0.012 Score=46.56 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 024474 66 TIVLAGLSGSGKTVLFYQL 84 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l 84 (267)
--+++|+.|+||||++.++
T Consensus 26 lnvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEEECCTTTCSTHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 4589999999999999987
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.59 E-value=0.0095 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+++.|+||+|||+|+.++..
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999998854
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.56 E-value=0.025 Score=42.51 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++.-|++-|..||||||+++.|..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHHH
Confidence 456799999999999999998864
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.021 Score=43.43 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
-|+|=|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999999875
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.38 E-value=0.021 Score=42.97 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+.+.|++|+|||.|++.+...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999998764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.25 E-value=0.025 Score=40.84 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+.-|++.|++|+||||+.-.|....
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 45579999999999999998887654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.20 E-value=0.024 Score=45.41 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+++.|+||+|||.|.+.|.+.
T Consensus 126 ~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 455799999999999999763
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.15 E-value=0.099 Score=40.60 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+.+.-+.+.|++++|||+|...++.
T Consensus 55 p~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 55 PRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCceEEEEecCCccchHHHHHHHHH
Confidence 4666889999999999999988765
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.017 Score=45.01 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+.+.-+.+.|++++|||+|.-.++..
T Consensus 52 ~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 52 PMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHH
Confidence 46678999999999999999887653
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.031 Score=42.50 Aligned_cols=26 Identities=23% Similarity=0.041 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+++.-++|.|+||+|||+|..+++..
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56668999999999999999998753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.86 E-value=0.033 Score=41.82 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
+++.-++|.|+||+|||+|...++
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 467789999999999999987764
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.62 E-value=0.028 Score=46.32 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 024474 66 TIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~ 85 (267)
--+|+|+.|+|||+++.++.
T Consensus 27 l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 27 FTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999973
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.57 E-value=0.032 Score=42.17 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
+.+--++|.|+||+|||+|...++...
T Consensus 32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 32 ESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 355679999999999999999987543
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.33 E-value=0.038 Score=42.02 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..|++.|..||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.31 E-value=0.087 Score=41.95 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++++|++|+|||.+.+.|..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 578889999999999998764
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.25 E-value=0.045 Score=36.92 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.7
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+.+.++.|.+.|..|+|||++.+.|..
T Consensus 2 r~kqgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 2 RPKQGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp GGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred CCccceEEEEeCCCCCCHHHHHHHHHH
Confidence 456889999999999999999998854
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.83 E-value=0.067 Score=41.60 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+.+.-+.+.|++++|||+|.-.++.
T Consensus 58 ~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 58 PRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp CSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred ccceeEEEecCCCcHHHHHHHHHHH
Confidence 5667899999999999999877764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.82 E-value=0.06 Score=41.75 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=20.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++--++|.|+||+|||+|+..+..
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3455789999999999999877653
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.77 E-value=0.052 Score=43.67 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+|+|=|+.|+||||+++.|...
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred eEEEEEECCccCCHHHHHHHHHHH
Confidence 358999999999999999998764
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=91.55 E-value=0.041 Score=44.24 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+|+|=|..|+||||+++.|...
T Consensus 5 ~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 5 VLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.30 E-value=0.069 Score=41.49 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++...+.+.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 5666789999999999999998865
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=91.13 E-value=0.051 Score=43.61 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+|.|=|+.|+||||+++.|...
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~~ 27 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVAL 27 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred ceEEEEECCcCCCHHHHHHHHHHH
Confidence 347999999999999999998653
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.88 E-value=0.041 Score=43.14 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=13.7
Q ss_pred EEEEEcCCCCCHHHHH
Q 024474 66 TIVLAGLSGSGKTVLF 81 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl 81 (267)
.++|+|+||+||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4889999999999754
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.67 E-value=0.061 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...++|+|.+|+|||+++..++.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHHH
Confidence 34799999999999999877654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=90.63 E-value=0.087 Score=40.60 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q 024474 64 STTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
+.-.+|+|++|+|||+|+-.+.
T Consensus 29 g~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 29 GTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4467899999999999998764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=90.58 E-value=0.055 Score=42.78 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.7
Q ss_pred EEEEEcCCCCCHHHHH
Q 024474 66 TIVLAGLSGSGKTVLF 81 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl 81 (267)
.++|.|++|+||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4889999999999754
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=89.80 E-value=0.11 Score=42.13 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.0
Q ss_pred CCEEEEEcCCCCCHHHHHHH
Q 024474 64 STTIVLAGLSGSGKTVLFYQ 83 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~ 83 (267)
..-.+|.|+||+|||+++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHH
Confidence 45789999999999998754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.56 E-value=0.12 Score=40.55 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-|++|+|++|+|||+|+..+...
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 46779999999999999999888753
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.74 E-value=0.77 Score=31.18 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=26.3
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
..+..+|+ +.+|=... ++.+..+...+.. .+++|++.+=..|=.
T Consensus 69 ~~~~~~d~--I~IDEaQF---f~dl~~~~~~~~~------~~~~Viv~GLd~Df~ 112 (133)
T d1xbta1 69 QEALGVAV--IGIDEGQF---FPDIVEFCEAMAN------AGKTVIVAALDGTFQ 112 (133)
T ss_dssp HHHHTCSE--EEESSGGG---CTTHHHHHHHHHH------TTCEEEEECCSBCTT
T ss_pred hhhcccce--EEeehhHH---HHHHHHHHHHHHh------cCCcEEEEEeccccc
Confidence 34556774 44564443 4445555544443 678899998888854
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.33 E-value=0.31 Score=35.72 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
......+++.|++|+|||++...+..
T Consensus 12 ~~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 12 KSEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp TCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 55788999999999999999988765
|
| >d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Four-helical up-and-down bundle superfamily: TrmE connector domain family: TrmE connector domain domain: TrmE connector domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.25 E-value=0.034 Score=40.24 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=38.9
Q ss_pred chhhhHH---HHHHHHHHHHHhhhcCCchHHH----HHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHH
Q 024474 12 GMEQWKK---ELEEWLNRGIEFINQIPPTQLY----IACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQL 84 (267)
Q Consensus 12 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l 84 (267)
....|+. .+++.++..+||.++..+.... +......+..+...+.+...-..+.++ .++|||+|+|.+
T Consensus 35 ~i~~ir~~L~~l~a~iEa~iDf~ee~~~~~~~~~~~l~~i~~~l~~li~~~~~g~~l~~g~~v-----vn~Gkssl~n~~ 109 (173)
T d1xzpa1 35 FVDSLRRELIEVLAEIRVELDYPDEIETNTGEVVTRLERIKEKLTEELKKADAGILLNRGQEI-----FERGSDSLITNL 109 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----HHHHTTCSCCSH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cccccchhhcch
Confidence 3444554 4688999999998776544322 223333333333333322222333333 388999998877
Q ss_pred Hc
Q 024474 85 RD 86 (267)
Q Consensus 85 ~~ 86 (267)
..
T Consensus 110 r~ 111 (173)
T d1xzpa1 110 RQ 111 (173)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.69 E-value=0.37 Score=36.33 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHH
Q 024474 64 STTIVLAGLSGSGKTVLFYQL 84 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l 84 (267)
..-++|.|+..+||||+++.+
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEeccCchhhHHHHHHH
Confidence 345889999999999999986
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=84.45 E-value=0.79 Score=34.69 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+|.|++|+||+.+...+..
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHH
Confidence 344689999999999999998864
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=84.39 E-value=0.3 Score=37.37 Aligned_cols=71 Identities=17% Similarity=0.033 Sum_probs=38.6
Q ss_pred ccEEEEeCCCCCCchh-hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 024474 116 KPVHLVDVPGHSRLRP-KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVT 190 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~-~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~ 190 (267)
+.+.++|||+...... ........+|.+++++++.. .++......+..+..... ..+.+ .-+|.|+.+...
T Consensus 116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~~--~sl~~~~~~~~~i~~~~~--~~~~~~~~vv~N~~~~~~ 188 (269)
T d1cp2a_ 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM--MALYAANNISKGIQKYAK--SGGVRLGGIICNSRKVAN 188 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH--HHHHHHHHHHHHHHHHBT--TBBCEEEEEEEECCSSSC
T ss_pred CCEEEeccCCccchhHHHHHHHhhccCceeeccchhh--hHHHHHHHHHHHHHhhcc--ccceeccceEEeeecCCC
Confidence 5799999987543222 22223345888888887754 344443333333322111 12333 347889988654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.16 E-value=0.39 Score=37.19 Aligned_cols=25 Identities=44% Similarity=0.527 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++-|+.++|++|+|||+|+..+..
T Consensus 66 gkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 66 AKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 4666999999999999999888764
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=82.48 E-value=0.59 Score=33.65 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++|+|...||||.+..++....
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~ 23 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDA 23 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCccHHHHHHHHHhcC
Confidence 6899999999999999997654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=82.40 E-value=0.39 Score=35.98 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 024474 66 TIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~ 85 (267)
-++|.|+..+||||++..+.
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhH
Confidence 47999999999999999763
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=80.51 E-value=0.41 Score=32.32 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...++.++.|+|||.++-.+..
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~ 30 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYA 30 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999998866543
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=80.48 E-value=0.29 Score=32.85 Aligned_cols=19 Identities=47% Similarity=0.427 Sum_probs=15.1
Q ss_pred CCCCEEEEEcCCCCCHHHH
Q 024474 62 KKSTTIVLAGLSGSGKTVL 80 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsL 80 (267)
+++.++++.+++|+|||..
T Consensus 5 ~~~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp STTCEEEECCCTTSSTTTT
T ss_pred HcCCcEEEEcCCCCChhHH
Confidence 3556788899999999933
|