Citrus Sinensis ID: 024481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MSRQPMTSTTSLRLLATRSCPTSAVLLPEATLLVEFLLPMNLHLIVTFLFTRKWLWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSSRPRHILASLCK
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHcccccccccccccccEEEEEEccccccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHcHHHHHHHHHccEEEEEEEccccccccccccccccccccccHHHHHHHHHHccccEEEcccccEEEEEEEEcEEEEccccccEEEEEccccHHHcccccccccccEEEEcccccccHHHHHHHHHHHHHcEEccccccccEEEEEcccccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccHcHHHHHHcccccccHHHcHHHHHHHHHHccccEEEEEEccccHHHHHHcccccccccccEEEEEEEcccccccccccccHHHHHHHccHccHHHHHHHHHcccEEEEEccccccccccccccHHHHHccccHHHHHHHHHHcccEEEEEccccEEEEEccccEEEEccccccEEEEEEEEEEcccccccHccccccEEEcccccccHHHHHHHHHHHHHHccccccccccEEEEEHHHHHHcccccccccEEEEEEcc
Coil and Loop (DISEMBL)
msrqpmtsttslrllatrscptsavllpeATLLVEFLLPMNLHLIVTFLFTRKWLWLERYmllpqfpsklfffcevepvsggdtplVLSHIVYERMKESYPEFVQQLEQDGLIYTRiyqekddltsptgrgwksiFLTEDKSLAEERAANLGlklewmedggvktvlgpipavtydkirqrKIWFNSIVMAYTCwkdtqndpvkavtfgngspypeDIVYNLMKILEEECVaipwqngdvlLIDNLAVLHarrsssrpRHILASLCK
Flexible Loop (DISEMBL)
msrqpmtsttslrllatrsCPTSAVLLPEATLLVEFLLPMNLHLIVTFLFTRKWLWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQekddltsptgrgWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLharrsssrprhilaslck
Low Complexity Region (SEG)
MSRQPMtsttslrllatrsCPTSAVLLPEATLLVEFLLPMNLHLIVTFLFTRKWLWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSSRPRHILASLCK
Disordered region (IsUnstruct)
************RLLATRSCPTSAVLLPEATLLVEFLLPMNLHLIVTFLFTRKWLWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHA****************
Disordered Region (DISOPRED)
***********LRLL****C*******P**TLLVEFLLPMNLHLIVTFLFTRKWLWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSSRPRHILASLCK
Disordered Region (DISEMBL)
***********LRLLATRSCPTSAVLLPEATLLVEFLLPMNLHLIVTFLFTRKWLWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSSRPRHILASLCK
Disordered Region (DISPRO)
***********LRLLATRSCPTSAVLLPEATLLVEFLLPMNLHLIVTFLFTRKWLWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSSRPRHILASLCK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRQPMTSTTSLRLLATRSCPTSAVLLPEATLLVEFLLPMNLHLIVTFLFTRKWLWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSSRPRHILASLCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q9LIG0	330	Clavaminate synthase-like	yes	no	0.760	0.615	0.679	1e-84

>sp|Q9LIG0|Y3136_ARATH Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1

 Score =  313 bits (801), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 138/203 (67%), Positives = 170/203 (83%)

Query: 65  QFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDL 124
           +FPSKLFF+CE+EP  GG+TP+VLSH+VYERMK+ +PEFVQ+LE+ GL+Y R+  E DD 
Sbjct: 128 EFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDP 187

Query: 125 TSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW 184
           +SP GRGWKS FLT DK+LAE+RA +LG+KLEW EDGG KTV+GPIPA+ YD+ R RK+W
Sbjct: 188 SSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKVW 247

Query: 185 FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLID 244
           FNS+V AYT W+D +NDP KAVTFG+G P P DIV++ ++ILEEECVA+PWQ GDVLLID
Sbjct: 248 FNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLID 307

Query: 245 NLAVLHARRSSSRPRHILASLCK 267
           N AVLH+RR    PR +LASLCK
Sbjct: 308 NWAVLHSRRPFDPPRRVLASLCK 330

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
255549820	322	conserved hypothetical protein [Ricinus	0.767	0.636	0.721	1e-87
297830838	330	predicted protein [Arabidopsis lyrata su	0.767	0.621	0.702	2e-86
225442460	325	PREDICTED: clavaminate synthase-like pro	0.764	0.627	0.721	4e-86
297743187	355	unnamed protein product [Vitis vinifera]	0.764	0.574	0.721	5e-86
224054408	327	predicted protein [Populus trichocarpa]	0.764	0.623	0.717	1e-85
449447823	324	PREDICTED: clavaminate synthase-like pro	0.764	0.629	0.707	4e-85
218187662	332	hypothetical protein OsI_00718 [Oryza sa	0.764	0.614	0.702	4e-83
115435008	335	Os01g0190000 [Oryza sativa Japonica Grou	0.764	0.608	0.702	4e-83
357125991	332	PREDICTED: clavaminate synthase-like pro	0.764	0.614	0.707	5e-83
15232542	330	clavaminate synthase-like protein [Arabi	0.760	0.615	0.679	6e-83

>gi|255549820|ref|XP_002515961.1| conserved hypothetical protein [Ricinus communis] gi|223544866|gb|EEF46381.1| conserved hypothetical protein [Ricinus communis]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 177/205 (86%)

Query: 63  LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 122
           +P+FPSKL FFCEVEP SGG+TP+VLSHIVYE+MKE YPEFV++L++ GLIY R+  E D
Sbjct: 118 VPEFPSKLLFFCEVEPGSGGETPIVLSHIVYEKMKEKYPEFVERLDKYGLIYNRVLPEVD 177

Query: 123 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 182
           D +SP GRGWKS FLT DK+LAEERAA LG+KLEW+EDGGVKT++GPIPA+ YDK+R RK
Sbjct: 178 DPSSPIGRGWKSTFLTNDKTLAEERAAKLGMKLEWLEDGGVKTIMGPIPAIKYDKLRNRK 237

Query: 183 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 242
           IWFNS+V AYT WKD +NDPVKAVTFG+G P P DI+Y+ +KILEEE +AIPWQ GD+LL
Sbjct: 238 IWFNSMVAAYTGWKDMRNDPVKAVTFGDGKPLPGDIIYDCLKILEEESIAIPWQKGDILL 297

Query: 243 IDNLAVLHARRSSSRPRHILASLCK 267
           IDN AVLHAR+S + PR +LASLCK
Sbjct: 298 IDNWAVLHARKSFTPPRRVLASLCK 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830838|ref|XP_002883301.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329141|gb|EFH59560.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 175/205 (85%)

Query: 63  LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 122
           +P+FPSKLFF+CE+EP SGG+TP+VLSH+VYERMKE +PEFVQ+LE+ GL+Y R+  E D
Sbjct: 126 VPEFPSKLFFYCEIEPKSGGETPIVLSHVVYERMKEKHPEFVQRLEEHGLLYVRVLGEDD 185

Query: 123 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 182
           D +SP GRGWKS FLT DK+LAE+RAANLG+KLEW EDGG KTV+GPIPA+ YD+ R RK
Sbjct: 186 DPSSPIGRGWKSTFLTHDKNLAEQRAANLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRK 245

Query: 183 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 242
           +WFNS+V AYT W+D +NDP KAVTFG+G P PEDIV++ ++ILEEECVA+PWQ GDVLL
Sbjct: 246 VWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPEDIVHDCLRILEEECVAVPWQRGDVLL 305

Query: 243 IDNLAVLHARRSSSRPRHILASLCK 267
           IDN AVLH+RR    PR +LASLCK
Sbjct: 306 IDNWAVLHSRRPFEPPRRVLASLCK 330

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442460|ref|XP_002283642.1| PREDICTED: clavaminate synthase-like protein At3g21360 [Vitis vinifera]

 Score =  323 bits (829), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 176/205 (85%), Gaps = 1/205 (0%)

Query: 63  LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 122
           +P+FPSKLFFFCEVEP +GG+TP+VLSHIVYERMK  YPEFVQ+LE+ GL+YTR+  E D
Sbjct: 122 VPEFPSKLFFFCEVEPGTGGETPIVLSHIVYERMKAKYPEFVQRLEERGLMYTRVLGEDD 181

Query: 123 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 182
           D +SP GRGWKS FLT+DK+ AE+RAA LG+KLEWMEDG VKT++GPIPAV YD+ RQRK
Sbjct: 182 DPSSPIGRGWKSTFLTQDKTTAEKRAAQLGMKLEWMEDG-VKTIMGPIPAVKYDESRQRK 240

Query: 183 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 242
           IWFNS+V AYT W+D +NDPVKAVTFG+G P P DI+Y+ +KILEEECVA+PWQ GDVLL
Sbjct: 241 IWFNSMVAAYTGWEDARNDPVKAVTFGDGLPLPADIIYDCLKILEEECVAVPWQKGDVLL 300

Query: 243 IDNLAVLHARRSSSRPRHILASLCK 267
           +DN AVLH+RR    PR +LASLCK
Sbjct: 301 LDNWAVLHSRRPFDPPRRVLASLCK 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743187|emb|CBI36054.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (828), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 176/205 (85%), Gaps = 1/205 (0%)

Query: 63  LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 122
           +P+FPSKLFFFCEVEP +GG+TP+VLSHIVYERMK  YPEFVQ+LE+ GL+YTR+  E D
Sbjct: 152 VPEFPSKLFFFCEVEPGTGGETPIVLSHIVYERMKAKYPEFVQRLEERGLMYTRVLGEDD 211

Query: 123 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 182
           D +SP GRGWKS FLT+DK+ AE+RAA LG+KLEWMEDG VKT++GPIPAV YD+ RQRK
Sbjct: 212 DPSSPIGRGWKSTFLTQDKTTAEKRAAQLGMKLEWMEDG-VKTIMGPIPAVKYDESRQRK 270

Query: 183 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 242
           IWFNS+V AYT W+D +NDPVKAVTFG+G P P DI+Y+ +KILEEECVA+PWQ GDVLL
Sbjct: 271 IWFNSMVAAYTGWEDARNDPVKAVTFGDGLPLPADIIYDCLKILEEECVAVPWQKGDVLL 330

Query: 243 IDNLAVLHARRSSSRPRHILASLCK 267
           +DN AVLH+RR    PR +LASLCK
Sbjct: 331 LDNWAVLHSRRPFDPPRRVLASLCK 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054408|ref|XP_002298245.1| predicted protein [Populus trichocarpa] gi|222845503|gb|EEE83050.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 147/205 (71%), Positives = 176/205 (85%), Gaps = 1/205 (0%)

Query: 63  LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 122
           +P+FPSKLFFFCEVEP SGG+TP+VLSH+VYERMKE YP+FV+++E+ GLIYTR+  E+D
Sbjct: 124 VPEFPSKLFFFCEVEPGSGGETPIVLSHVVYERMKERYPDFVEKIEEHGLIYTRVLGEED 183

Query: 123 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 182
           D +SP GRGWKS FLT DKS+AE+RAA LG+ LEW EDG VKT++GPIPA+ YDK R RK
Sbjct: 184 DPSSPIGRGWKSTFLTNDKSVAEQRAAKLGMTLEWFEDG-VKTIMGPIPAIKYDKSRNRK 242

Query: 183 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 242
           IWFNS+V AYT WKD +NDPVKAVTFG+G P P DI+++ +KILEEE +AIPWQ GDVLL
Sbjct: 243 IWFNSMVAAYTGWKDARNDPVKAVTFGDGQPLPGDIIHDCLKILEEESLAIPWQKGDVLL 302

Query: 243 IDNLAVLHARRSSSRPRHILASLCK 267
           IDN AVLHARRS + PR +LASLCK
Sbjct: 303 IDNWAVLHARRSFNPPRRVLASLCK 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447823|ref|XP_004141667.1| PREDICTED: clavaminate synthase-like protein At3g21360-like [Cucumis sativus]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 177/205 (86%), Gaps = 1/205 (0%)

Query: 63  LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 122
           +P+FP+KLFF+CEVEP SGG+TP+VLSH+VYER+KE YPEFV++LE+ GLIYTR+  E D
Sbjct: 121 VPEFPAKLFFYCEVEPRSGGETPIVLSHVVYERVKEKYPEFVERLEEQGLIYTRVLGEDD 180

Query: 123 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 182
           D +SP GRGWKS FLT DKS+AEERAA LG+KLEW++DG VKTV+GPIPA+ +DK+RQRK
Sbjct: 181 DPSSPIGRGWKSTFLTHDKSIAEERAAKLGMKLEWLKDG-VKTVMGPIPAIKHDKVRQRK 239

Query: 183 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 242
           IWFNS+V AYT W+D +NDPVKAVTFG+G+P P DI+Y  ++ILEEE VAIPWQ GD+LL
Sbjct: 240 IWFNSMVAAYTGWEDARNDPVKAVTFGDGTPLPADIIYGCLRILEEESVAIPWQKGDILL 299

Query: 243 IDNLAVLHARRSSSRPRHILASLCK 267
           IDN AVLH+RR    PR ILASLC+
Sbjct: 300 IDNWAVLHSRRPFLPPRRILASLCR 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218187662|gb|EEC70089.1| hypothetical protein OsI_00718 [Oryza sativa Indica Group]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 172/205 (83%), Gaps = 1/205 (0%)

Query: 63  LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 122
           +P FP+KLFFFCEVEP  GG+TP+VLSH VY+RMKE YPEFV++LE+DGLIYTR+  E D
Sbjct: 129 VPTFPAKLFFFCEVEPKIGGETPIVLSHYVYKRMKEKYPEFVEKLEKDGLIYTRVLGEGD 188

Query: 123 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 182
           D +SP GRGW S FLT+DKS+AEERAA LG+KLEW EDG VKT++GPIPAV +D+ R RK
Sbjct: 189 DPSSPIGRGWHSTFLTKDKSIAEERAAKLGMKLEWTEDG-VKTIMGPIPAVKWDESRGRK 247

Query: 183 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 242
           IWFNS+V AYT WKD +NDPV+AVTFG+GSP P D++    +ILEEECVA+PW+ GD+LL
Sbjct: 248 IWFNSMVAAYTGWKDARNDPVRAVTFGDGSPLPADVIAGCGEILEEECVAVPWRQGDILL 307

Query: 243 IDNLAVLHARRSSSRPRHILASLCK 267
           IDN AVLH+RRS   PR ILASLCK
Sbjct: 308 IDNWAVLHSRRSFEPPRRILASLCK 332

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115435008|ref|NP_001042262.1| Os01g0190000 [Oryza sativa Japonica Group] gi|55771308|dbj|BAD72217.1| syringomycin biosynthesis enzyme -like [Oryza sativa Japonica Group] gi|113531793|dbj|BAF04176.1| Os01g0190000 [Oryza sativa Japonica Group]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 172/205 (83%), Gaps = 1/205 (0%)

Query: 63  LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 122
           +P FP+KLFFFCEVEP  GG+TP+VLSH VY+RMKE YPEFV++LE+DGLIYTR+  E D
Sbjct: 129 VPTFPAKLFFFCEVEPKIGGETPIVLSHYVYKRMKEKYPEFVEKLEKDGLIYTRVLGEGD 188

Query: 123 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 182
           D +SP GRGW S FLT+DKS+AEERAA LG+KLEW EDG VKT++GPIPAV +D+ R RK
Sbjct: 189 DPSSPIGRGWHSTFLTKDKSIAEERAAKLGMKLEWTEDG-VKTIMGPIPAVKWDESRGRK 247

Query: 183 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 242
           IWFNS+V AYT WKD +NDPV+AVTFG+GSP P D++    +ILEEECVA+PW+ GD+LL
Sbjct: 248 IWFNSMVAAYTGWKDARNDPVRAVTFGDGSPLPADVIAGCGEILEEECVAVPWRQGDILL 307

Query: 243 IDNLAVLHARRSSSRPRHILASLCK 267
           IDN AVLH+RRS   PR ILASLCK
Sbjct: 308 IDNWAVLHSRRSFEPPRRILASLCK 332

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125991|ref|XP_003564672.1| PREDICTED: clavaminate synthase-like protein At3g21360-like [Brachypodium distachyon]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 171/205 (83%), Gaps = 1/205 (0%)

Query: 63  LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 122
           +P FPSKLFFFCEVEP SGG+TP+VLSH VY+RMK+ +PEFV++LE+DGLIYTR+  E D
Sbjct: 129 VPTFPSKLFFFCEVEPKSGGETPIVLSHYVYKRMKDRFPEFVEKLEKDGLIYTRVLGEGD 188

Query: 123 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 182
           D +SP GRGW S FLT+DK++AEERA  LG+KLEW  DG VKTV+GPIPAV +D+ R RK
Sbjct: 189 DPSSPIGRGWHSTFLTKDKAVAEERALKLGMKLEWTGDG-VKTVMGPIPAVKWDEARGRK 247

Query: 183 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 242
           IWFNS+V AYT WKD +NDPVKAVTFG+GSP P D++    KILEEECVAIPWQ GD+LL
Sbjct: 248 IWFNSMVAAYTGWKDARNDPVKAVTFGDGSPLPADVIGECGKILEEECVAIPWQQGDILL 307

Query: 243 IDNLAVLHARRSSSRPRHILASLCK 267
           IDN AVLH+RRS   PR +LASLCK
Sbjct: 308 IDNWAVLHSRRSFEPPRRVLASLCK 332

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232542|ref|NP_188773.1| clavaminate synthase-like protein [Arabidopsis thaliana] gi|73921104|sp|Q9LIG0.1|Y3136_ARATH RecName: Full=Clavaminate synthase-like protein At3g21360 gi|56967335|pdb|1Y0Z|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|56967336|pdb|1Y0Z|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|150261485|pdb|2Q4A|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|150261486|pdb|2Q4A|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|9294683|dbj|BAB03049.1| syringomycin biosynthesis enzyme-like protein [Arabidopsis thaliana] gi|26450615|dbj|BAC42419.1| unknown protein [Arabidopsis thaliana] gi|182623791|gb|ACB88834.1| At3g21360 [Arabidopsis thaliana] gi|332642979|gb|AEE76500.1| clavaminate synthase-like protein [Arabidopsis thaliana]

 Score =  313 bits (801), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 138/203 (67%), Positives = 170/203 (83%)

Query: 65  QFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDL 124
           +FPSKLFF+CE+EP  GG+TP+VLSH+VYERMK+ +PEFVQ+LE+ GL+Y R+  E DD 
Sbjct: 128 EFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDP 187

Query: 125 TSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW 184
           +SP GRGWKS FLT DK+LAE+RA +LG+KLEW EDGG KTV+GPIPA+ YD+ R RK+W
Sbjct: 188 SSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKVW 247

Query: 185 FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLID 244
           FNS+V AYT W+D +NDP KAVTFG+G P P DIV++ ++ILEEECVA+PWQ GDVLLID
Sbjct: 248 FNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLID 307

Query: 245 NLAVLHARRSSSRPRHILASLCK 267
           N AVLH+RR    PR +LASLCK
Sbjct: 308 NWAVLHSRRPFDPPRRVLASLCK 330

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2089423	330	AT3G21360 [Arabidopsis thalian	0.760	0.615	0.679	3.8e-78
ASPGD|ASPL0000041251	401	AN2698 [Emericella nidulans (t	0.235	0.157	0.409	2.4e-10

TAIR|locus:2089423 AT3G21360 [Arabidopsis thaliana (taxid:3702)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 138/203 (67%), Positives = 170/203 (83%)

Query:    65 QFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDL 124
             +FPSKLFF+CE+EP  GG+TP+VLSH+VYERMK+ +PEFVQ+LE+ GL+Y R+  E DD 
Sbjct:   128 EFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDP 187

Query:   125 TSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW 184
             +SP GRGWKS FLT DK+LAE+RA +LG+KLEW EDGG KTV+GPIPA+ YD+ R RK+W
Sbjct:   188 SSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKVW 247

Query:   185 FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLID 244
             FNS+V AYT W+D +NDP KAVTFG+G P P DIV++ ++ILEEECVA+PWQ GDVLLID
Sbjct:   248 FNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLID 307

Query:   245 NLAVLHARRSSSRPRHILASLCK 267
             N AVLH+RR    PR +LASLCK
Sbjct:   308 NWAVLHSRRPFDPPRRVLASLCK 330

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

ASPGD|ASPL0000041251 AN2698 [Emericella nidulans (taxid:162425)]

 Score = 117 (46.2 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query:   203 VKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARR---SSSRPR 259
             V   TFG+G+P PE+ +  L +I +E  V   WQ+GDVL+ DN+   H R         R
Sbjct:   312 VAVQTFGDGTPIPEEYLATLARITDEIRVLHRWQDGDVLVFDNVIAQHGREPWEGEQGDR 371

Query:   260 HILASL 265
              +LASL
Sbjct:   372 VVLASL 377

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LIG0	Y3136_ARATH	1, ., -, ., -, ., -	0.6798	0.7602	0.6151	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
PLN00139	320	PLN00139, PLN00139, hypothetical protein; Provisio	2e-58
pfam02668	215	pfam02668, TauD, Taurine catabolism dioxygenase Ta	4e-14
COG2175	286	COG2175, TauD, Probable taurine catabolism dioxyge	3e-06
cd00250	262	cd00250, CAS_like, Clavaminic acid synthetase (CAS	8e-04

>gnl|CDD|165707 PLN00139, PLN00139, hypothetical protein; Provisional

 Score =  188 bits (479), Expect = 2e-58
 Identities = 87/209 (41%), Positives = 125/209 (59%), Gaps = 10/209 (4%)

Query: 61  MLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQE 120
           +L+ + P K+  FCE+ P  GG TP V S  V ERM E +PE V+++E  GL YT     
Sbjct: 120 VLIKESPKKVILFCEIPPPEGGQTPFVPSFRVTERMLEEFPEAVEEVEAKGLKYTFTALS 179

Query: 121 KDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVT--YDKI 178
           K+D +S  GRGW+  F T DK+ AE RA  LG+ +EW+ +GGVKT+LGP  ++T  +D  
Sbjct: 180 KNDTSSMRGRGWEDAFGTSDKAEAERRAKALGMDMEWLPNGGVKTILGP-RSLTKVFDGR 238

Query: 179 RQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNG 238
           + R++WFN++V               +    +G+  PE+ V    +I+EEE +   W+ G
Sbjct: 239 KGRRMWFNTVV-------GMHGKESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKG 291

Query: 239 DVLLIDNLAVLHARRSSSRPRHILASLCK 267
           DVL +DNLA+LH RR S  PR +L + CK
Sbjct: 292 DVLFLDNLALLHGRRPSLPPRKVLVATCK 320

Length = 320

>gnl|CDD|217174 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 38/204 (18%), Positives = 58/204 (28%), Gaps = 58/204 (28%)

Query: 63  LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 122
           L + P      C   P  GG+T        Y  +    PE  ++L  +GL     Y +  
Sbjct: 63  LEEPPGIQLLHCLEVPAEGGETLFADGRAAYNALS---PELKERL-AEGLRAVHSYPDGH 118

Query: 123 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 182
                            D  L                           P V    +  RK
Sbjct: 119 Y----------------DAGLRPPSRH---------------------PVVRTHPVTGRK 141

Query: 183 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQNGDV 240
           + FN+               +  +           ++  L   L   E      WQ GD+
Sbjct: 142 VLFNNPHFTT---------RIVGLPLAESQA----LLDALDAHLTDPEFTYRHKWQPGDL 188

Query: 241 LLIDNLAVLHARRS--SSRPRHIL 262
           ++ DN  VLH R +   +  RH+L
Sbjct: 189 VIWDNRRVLHGRTAFDPTGRRHLL 212

This family consists of taurine catabolism dioxygenases of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent taurine dioxygenase. This enzyme catalyzes the oxygenolytic release of sulfite from taurine. TfdA from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1. Length = 215

>gnl|CDD|225086 COG2175, TauD, Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 57/217 (26%)

Query: 56  WLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYT 115
           W      L   P+         P +GGDT    +   YE + E   E ++ L      ++
Sbjct: 101 WHTDVTFLETPPAGSILQAVELPSTGGDTLFADTAAAYETLPEPLRELLRGL---PAHHS 157

Query: 116 RIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTY 175
              +                F  E  S  E   A              + ++   P   +
Sbjct: 158 NEER----------------FPRERPSKTERPHAR------------FREIVRKNPPTEH 189

Query: 176 DKIR------QRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVY-NLMKILE- 227
             +R      ++ ++ N          +     +  +      P   + +   L   L  
Sbjct: 190 PVVRTHPETGEKALFVN----------EGFTTRIVGL-----PPKESEALLAELQAHLTD 234

Query: 228 -EECVAIPWQNGDVLLIDNLAVLHARR--SSSRPRHI 261
            E      WQ GD+++ DN A LHA     + + R +
Sbjct: 235 PENQYRHRWQPGDIVIWDNRATLHAATAFYADQRRIL 271

Length = 286

>gnl|CDD|238154 cd00250, CAS_like, Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 227 EEECVAIPWQNGDVLLIDNLAVLHARRSSS----RPRHIL 262
            +  + +  + GD+L+ DN  VLH R + S      R + 
Sbjct: 216 PDNQLTVKLEPGDLLIFDNRRVLHGRTAFSPRYGGDRWLK 255

In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2. Length = 262

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
PLN00139	320	hypothetical protein; Provisional	100.0
TIGR02409	366	carnitine_bodg gamma-butyrobetaine hydroxylase. Me	100.0
TIGR02410	362	carnitine_TMLD trimethyllysine dioxygenase. Member	100.0
PRK09553	277	tauD taurine dioxygenase; Reviewed	99.98
cd00250	262	CAS_like Clavaminic acid synthetase (CAS) -like; C	99.96
PF02668	258	TauD: Taurine catabolism dioxygenase TauD, TfdA fa	99.95
COG2175	286	TauD Probable taurine catabolism dioxygenase [Seco	99.94
KOG3888	407	consensus Gamma-butyrobetaine,2-oxoglutarate dioxy	99.93
KOG3889	371	consensus Predicted gamma-butyrobetaine,2-oxogluta	99.92
PRK02963	316	carbon starvation induced protein; Validated	99.89
PF08943	297	CsiD: CsiD; InterPro: IPR015038 This group of prot	98.22

>PLN00139 hypothetical protein; Provisional

Probab=100.00  E-value=2e-54  Score=391.77  Aligned_cols=247  Identities=36%  Similarity=0.629  Sum_probs=215.6

Q ss_pred             EEeecCCCC-CCcchhHHHHHhhhcc-----ccCcchhhhccccCC-------ccccccccccCCCCceEEEeeeecCCC
Q 024481           14 LLATRSCPT-SAVLLPEATLLVEFLL-----PMNLHLIVTFLFTRK-------WLWLERYMLLPQFPSKLFFFCEVEPVS   80 (267)
Q Consensus        14 ~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~t~~-------~lwHtD~~y~~~~P~~~~l~c~~~p~~   80 (267)
                      ++-++|.|. ++..+..++.++|...     ...++.+...+||+.       ..||+|++|.+.||.+++|||+++|++
T Consensus        60 avlfRG~~i~~~~~f~~~a~~fg~~~~~y~~~~~r~~v~~~v~t~te~P~~~~i~~H~E~sy~~~pP~~~~f~C~~~p~~  139 (320)
T PLN00139         60 AVLLRGFDVKNAEDFNDIIEAFGWDDIRYVGPAPRTHVYKRIWTANEGPLSEFIYYHHEMVLIKESPKKVILFCEIPPPE  139 (320)
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCccccccCCCCCcccccccEecCCCCCccccccccccccCccCCCceEEEEecccCCC
Confidence            566889997 5678889999997632     334554555666642       249999999999999999999999999


Q ss_pred             CCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccC
Q 024481           81 GGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMED  160 (267)
Q Consensus        81 GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~d  160 (267)
                      ||+|+|||+++||+.|+++.|+++++|+++||+|.|+++......++.+.+|+++|+|+|+++||++|++.|+.++|.+|
T Consensus       140 GGeT~~aD~~~v~~~L~~~~p~~~e~l~~~gv~y~r~~~~~~~~~~~~~~sWq~~F~t~d~~eve~~~~~~g~~~eW~~d  219 (320)
T PLN00139        140 GGQTPFVPSFRVTERMLEEFPEAVEEVEAKGLKYTFTALSKNDTSSMRGRGWEDAFGTSDKAEAERRAKALGMDMEWLPN  219 (320)
T ss_pred             CCCCeeecHHHHHHHhhhhCHHHHHHHHhcCceEEEeccccccccccccchHHHHhCCCCHHHHHHHHHHcCCeEEEcCC
Confidence            99999999999999999999999999999999999988765444456678999999999999999999999999999999


Q ss_pred             CceEEEEeeeCeeEecC-CCCceEEeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHhhccEEEeeccCCC
Q 024481          161 GGVKTVLGPIPAVTYDK-IRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGD  239 (267)
Q Consensus       161 g~~~~~~~~~P~v~~hP-~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~~~~~~~Wq~GD  239 (267)
                      |.+++.....|+++.|| .||+++|||++..+|..       .+..++||||++|+.++|++|.++++++++.+.||+||
T Consensus       220 g~l~~~~~~~~~~~~~~~~tg~~~wFN~~~~~h~~-------~~~~~~fGDGs~i~~~~l~~i~~~~~~~~~~~~Wq~GD  292 (320)
T PLN00139        220 GGVKTILGPRSLTKVFDGRKGRRMWFNTVVGMHGK-------ESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKGD  292 (320)
T ss_pred             CcEEEEEeeccceeccCCCCCCEEEeechhhhhcc-------CCCCceecCCCcCCHHHHHHHHHHHHHhhccCCCCCCC
Confidence            98776546668787755 89999999999887742       23467899999999999999999999999999999999


Q ss_pred             EEEEeCcccccccCCCCCcceeeecccC
Q 024481          240 VLLIDNLAVLHARRSSSRPRHILASLCK  267 (267)
Q Consensus       240 vli~DN~rvlHgR~~f~g~R~ll~~~~~  267 (267)
                      |||+||++++|||.||+|+|+++|+|++
T Consensus       293 vl~iDN~~~~HGR~pf~g~Rrvlv~m~~  320 (320)
T PLN00139        293 VLFLDNLALLHGRRPSLPPRKVLVATCK  320 (320)
T ss_pred             EEEEeChhhhcCCCCCCCCceEEEEecC
Confidence            9999999999999999999999999986

>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase

Probab=100.00  E-value=3e-32  Score=252.32  Aligned_cols=195  Identities=20%  Similarity=0.275  Sum_probs=148.4

Q ss_pred             eEEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCcc-ccccccccCCCCceEEEeeeecCCCCC
Q 024481           13 RLLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKWL-WLERYMLLPQFPSKLFFFCEVEPVSGG   82 (267)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~l-wHtD~~y~~~~P~~~~l~c~~~p~~GG   82 (267)
                      -++-++|+|.++..+..++.++|++++++++.+         .+.+||+..+ ||+|++|.+.||++++|+|+++|.+||
T Consensus       136 G~v~~rg~~~~~~~~~~~~~~~G~~~~~~~g~~~~v~~~~~~~~~~yt~~~l~~HtD~~y~~~pP~~~~L~c~~~~~~GG  215 (366)
T TIGR02409       136 GIAVLKGAPTKPGAVEKLGKRIGFIRETNYGLLFEVRLKADANNLAYTNGGLPFHTDNPYRDHPPGLQLLHCLESTVEGG  215 (366)
T ss_pred             cEEEEeCCCCCHHHHHHHHHHhccccccCCCCeEEEEecCCccccccccccccccccCCccCCCCceeeeeecccCCCCc
Confidence            477899999999999999999999998887753         2456877554 899999999999999999999999999


Q ss_pred             CCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCc
Q 024481           83 DTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGG  162 (267)
Q Consensus        83 eT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~  162 (267)
                      +|.|+|+++||+.|+++.|+.++.|....+.|... ..                                       +. 
T Consensus       216 ~T~~~d~~~~~~~L~~~~p~~~~~L~~~~~~~~~~-~~---------------------------------------~~-  254 (366)
T TIGR02409       216 DSLFVDGFAVAEALRVENPEAFRILTSTPVEFREE-GD---------------------------------------DV-  254 (366)
T ss_pred             ceeeeeHHHHHHHHhHhCHHHHHHHhcCccceEEc-CC---------------------------------------Cc-
Confidence            99999999999999999999999999766555421 00                                       00 


Q ss_pred             eEEEEeeeCeeEecCCCCc--eEEeeccchhccccccCCCCCCcccccCCCCCCcH---HHHHHHHHHh--hccEEEeec
Q 024481          163 VKTVLGPIPAVTYDKIRQR--KIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPE---DIVYNLMKIL--EEECVAIPW  235 (267)
Q Consensus       163 ~~~~~~~~P~v~~hP~TG~--~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~---~~l~~l~~~~--~~~~~~~~W  235 (267)
                      . .....||+|+.||. |+  .+.||+.....+              ++-......   ++++.|.+.+  ++++++|+|
T Consensus       255 ~-~~~~~~Pvi~~~~~-g~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~al~~l~~~~~~p~~~~~~~l  318 (366)
T TIGR02409       255 H-DLRARHPVIELDDD-GEVVKIRFNNASRDWF--------------FDVPPSRVQDFYAAYRRFTELIEQPRFKFTFKL  318 (366)
T ss_pred             e-eeEeccCEEEECCC-CCEEEEEeCCcccCcc--------------CCCCHHHHHHHHHHHHHHHHHHcCcccEEEEEc
Confidence            0 02347999999995 76  556665211111              000001111   2344444433  478999999


Q ss_pred             cCCCEEEEeCcccccccCCCC---Ccceeeec
Q 024481          236 QNGDVLLIDNLAVLHARRSSS---RPRHILAS  264 (267)
Q Consensus       236 q~GDvli~DN~rvlHgR~~f~---g~R~ll~~  264 (267)
                      ++||||||||+++||||++|+   |+|++.++
T Consensus       319 ~pGd~vi~DN~rvlH~R~af~~~~~~R~L~g~  350 (366)
T TIGR02409       319 EPGDLVLFDNTRLLHARDAFSNPEGKRHLQGC  350 (366)
T ss_pred             CCCcEEEEeceEEeecCCCcCCCCCceEEEEE
Confidence            999999999999999999996   78888775

Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.

>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase

Probab=100.00  E-value=3.8e-32  Score=251.10  Aligned_cols=205  Identities=16%  Similarity=0.153  Sum_probs=152.2

Q ss_pred             eEEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCcc-ccccccccCCCCceEEEeeeecCCCCC
Q 024481           13 RLLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKWL-WLERYMLLPQFPSKLFFFCEVEPVSGG   82 (267)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~l-wHtD~~y~~~~P~~~~l~c~~~p~~GG   82 (267)
                      -++-++|+|.+++.+..++.++|++++++++.+         .+.+||+..+ ||||++|.+.||++++|+|+++|.+||
T Consensus       128 G~v~~~g~~~~~~~~~~~a~riG~~r~t~~g~~~~v~~~~~~~~~ayt~~~l~~HtD~~y~~~pp~~~~L~c~~~~~~GG  207 (362)
T TIGR02410       128 GFTFVDNVPVTPEATEKLCERISIIRPTHYGGFWDFTSDLSKNDTAYTSLAIDMHTDGTYWDETPGLQLFHCLTHDGTGG  207 (362)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHhccceecCCCCeEEEEecCCCcccccccCCccccccCCCCCCCCcceeEeeeecCCCCC
Confidence            477899999999999999999999999998753         3445776444 799999999999999999999999999


Q ss_pred             CCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCc
Q 024481           83 DTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGG  162 (267)
Q Consensus        83 eT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~  162 (267)
                      +|.|+|+++||+.|++++||.++.|.+..+.|.....  .                                     +..
T Consensus       208 ~t~~~d~~~~~~~L~~~~pe~~~~L~~~~~~~~~~~~--~-------------------------------------~~~  248 (362)
T TIGR02410       208 ETVLVDGFYCAEQLRKEAPEDFELLTKVPIPHHYSGE--S-------------------------------------DSV  248 (362)
T ss_pred             ceeeeeHHHHHHHHhhhChHHHHHHhcCccceEEccC--c-------------------------------------Cce
Confidence            9999999999999999999999999987766542100  0                                     000


Q ss_pred             eEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCC--cHHHHHHHHHHh--hccEEEeeccCC
Q 024481          163 VKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPY--PEDIVYNLMKIL--EEECVAIPWQNG  238 (267)
Q Consensus       163 ~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~--~~~~l~~l~~~~--~~~~~~~~Wq~G  238 (267)
                      .......||+|+.||.+|+...++......+...        .+.++.-+..  ..++|+.|.+.+  +++++.|+|+||
T Consensus       249 ~~~~~~~~Pvi~~~p~~G~~~~ir~~~~~r~~~~--------~~~~~~~~~~~~~~~Al~~l~~~~~~p~~~~~~~l~pG  320 (362)
T TIGR02410       249 FIHPDYPQPVLTLDPSTGELTQIRWNNSDRAVMD--------CLNWSSPYDVPKFYKAIRRFNKIITDPDNEIEFKLRPG  320 (362)
T ss_pred             eeeeccCCCEEEecCCCCcEEEEEcCCCcccccc--------cCCCCCHHHHHHHHHHHHHHHHHhcChhcEEEEEcCCc
Confidence            0012236899999999999754432111110000        0011100011  124555665544  468999999999


Q ss_pred             CEEEEeCcccccccCCCCCcceeeec
Q 024481          239 DVLLIDNLAVLHARRSSSRPRHILAS  264 (267)
Q Consensus       239 Dvli~DN~rvlHgR~~f~g~R~ll~~  264 (267)
                      |||||||+|+||||++|+|.|++.++
T Consensus       321 d~vi~DN~rvLHgRtaf~g~R~L~G~  346 (362)
T TIGR02410       321 TVLIFDNWRVLHSRTSFTGYRRMCGC  346 (362)
T ss_pred             cEEEEeeEEEeecCCCcCCceEEEEE
Confidence            99999999999999999999998875

Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.

>PRK09553 tauD taurine dioxygenase; Reviewed

Probab=99.98  E-value=5.3e-32  Score=241.80  Aligned_cols=212  Identities=17%  Similarity=0.145  Sum_probs=141.8

Q ss_pred             eEEeecCCCCCCcchhHHHHHhhhccc-cCcchh--h------hcccc---CCccccccccccCCCCceEEEeeeecCCC
Q 024481           13 RLLATRSCPTSAVLLPEATLLVEFLLP-MNLHLI--V------TFLFT---RKWLWLERYMLLPQFPSKLFFFCEVEPVS   80 (267)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~------~~~~t---~~~lwHtD~~y~~~~P~~~~l~c~~~p~~   80 (267)
                      -++-++|.|-++..+.+++.++|+++. ...+..  .      ++.-.   +...||+|++|.+.||.+++|||+++|++
T Consensus        41 Gvlvfr~q~l~~~~~~~~~~~~G~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~wHtD~sy~~~pp~~~~L~~~~~p~~  120 (277)
T PRK09553         41 QVLFFRDQPITPQQQRDLAARFGDLHIHPVYPHAEGVPEIIVLDTHNDNPPDNDNWHTDVTFIETPPLGAILAAKQLPST  120 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCccCCCCCCCCCCCeEEEEeccCCCCCCCCCCeecccCeeCCCceeEEEEEecCCC
Confidence            367889999998889999999999862 221111  0      11100   12469999999999999999999999999


Q ss_pred             CCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccC
Q 024481           81 GGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMED  160 (267)
Q Consensus        81 GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~d  160 (267)
                      ||+|.|||+++||++|+   ++++++|++..+.|.  +.....         ...+...+..           ...|...
T Consensus       121 GG~T~fad~~~ay~~L~---~~~~~~l~~l~~~h~--~~~~~~---------~~~~~~~~~~-----------~~~~~~~  175 (277)
T PRK09553        121 GGDTLWASGIAAYEALS---APFRQLLSGLTAEHD--FRKSFP---------EYKYRKTEEE-----------HQRWEEA  175 (277)
T ss_pred             CCccHhhhHHHHHHhCC---HHHHHHhcCcEEEEc--chhhcc---------cccccccccc-----------ccccccc
Confidence            99999999999999999   788899997766663  111000         0000000000           0000000


Q ss_pred             CceEEEEeeeCeeEecCCCCceEEeec-cchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEEeeccC
Q 024481          161 GGVKTVLGPIPAVTYDKIRQRKIWFNS-IVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQN  237 (267)
Q Consensus       161 g~~~~~~~~~P~v~~hP~TG~~~lfn~-~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq~  237 (267)
                      . .......||+|++||+||++.+|.+ .....+              .|-..+.++++++.|.+.+  ++++|+|+|++
T Consensus       176 ~-~~~~~~~hPlVr~hp~tG~k~L~~n~~~~~~i--------------~gl~~~es~~ll~~L~~~~~~p~~~~~~~w~~  240 (277)
T PRK09553        176 V-AKNPPLLHPVVRTHPVSGRQALFVNEGFTTRI--------------VDLSEKESEALLGFLFAHITKPEFQVRWRWQP  240 (277)
T ss_pred             c-ccCCCCCCCeEEeCCCCCceeEEeccccccEe--------------CCCCHHHHHHHHHHHHHHhcCcCeEEEEecCC
Confidence            0 0001247999999999999986633 333333              1222244566666666543  67999999999


Q ss_pred             CCEEEEeCcccccccCCC-CCcceeeec
Q 024481          238 GDVLLIDNLAVLHARRSS-SRPRHILAS  264 (267)
Q Consensus       238 GDvli~DN~rvlHgR~~f-~g~R~ll~~  264 (267)
                      ||||||||+++||++.++ .+.+|++-+
T Consensus       241 GD~viwDNr~~~H~a~~~~~~~~R~~~R  268 (277)
T PRK09553        241 NDVAIWDNRVTQHYANADYLPQRRIMHR  268 (277)
T ss_pred             CCEEEEcCcceeEecccCCCCCceEEEE
Confidence            999999999999999865 445555543

>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases

Probab=99.96  E-value=5.3e-29  Score=220.55  Aligned_cols=196  Identities=17%  Similarity=0.176  Sum_probs=148.0

Q ss_pred             eEEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCcc-ccccccccCCCCceEEEeeeecCCCCC
Q 024481           13 RLLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKWL-WLERYMLLPQFPSKLFFFCEVEPVSGG   82 (267)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~l-wHtD~~y~~~~P~~~~l~c~~~p~~GG   82 (267)
                      .++-+++.|+....+..+..++|+++.+.++.+         .+.+||+..+ ||||++|.+.||++++|+|+++|..||
T Consensus        45 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~t~~~l~~HtD~~y~~~pp~~~~L~cl~~~~~GG  124 (262)
T cd00250          45 GFAELEGAPLDPAALLGLAERIGFIRGTLYGDVVPVPGKENAQNGAYTNTLLPLHTDLAYHEYRPGLQILHCLRNTATGG  124 (262)
T ss_pred             cEEEEeCCCCCHHHHHHHHHHhcccccccCCCeEEeccCCCccccccccCCcCccccCCCCCCCCceEEEEEeccCCCCC
Confidence            467789999999999999999999999998875         2334666544 799999999999999999999999999


Q ss_pred             CCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCc
Q 024481           83 DTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGG  162 (267)
Q Consensus        83 eT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~  162 (267)
                      +|.|+|+.++|+.|.+++|+.++.|++..+.|.+....                ..                    ..  
T Consensus       125 ~T~~vd~~~~~~~L~~~~pe~~~~L~~~~~~~~~~~~~----------------~~--------------------~~--  166 (262)
T cd00250         125 ATLLVDGFRVALKLLREDPEAFELLSRVPVRHAYPGSS----------------GT--------------------MF--  166 (262)
T ss_pred             cceeeeHHHHHHHHHhhCHHHHHHHhCCCeeEEEcCCC----------------cc--------------------ce--
Confidence            99999999999999888899999999888877632110                00                    00  


Q ss_pred             eEEEEeeeCeeEecCCCCceE-EeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHhhc--cEEEeeccCCC
Q 024481          163 VKTVLGPIPAVTYDKIRQRKI-WFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEE--ECVAIPWQNGD  239 (267)
Q Consensus       163 ~~~~~~~~P~v~~hP~TG~~~-lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~--~~~~~~Wq~GD  239 (267)
                        .....+|+|..||  |.++ .|+.......         +    . ++.+...++++.|.+.+.+  ++++|+|++||
T Consensus       167 --~~~~~~Pii~~~~--~~~~~r~~~~~~~~~---------p----~-~~~~~~~~al~~l~~~~~~~~~~~~~~l~~Gd  228 (262)
T cd00250         167 --SSYQLAPVLELDP--EDPVLRYNNYDNFSV---------P----F-DEVKEAYEALAELVALIEDPDNQLTVKLEPGD  228 (262)
T ss_pred             --eeecccCEEEeCC--CccEEEEeCCCCCCC---------C----H-HHHHHHHHHHHHHHHHHcChhhEEEEEcCCCC
Confidence              0234799999999  5544 3432210000         0    0 0001334567777766654  89999999999


Q ss_pred             EEEEeCcccccccCCCCC----cceeeec
Q 024481          240 VLLIDNLAVLHARRSSSR----PRHILAS  264 (267)
Q Consensus       240 vli~DN~rvlHgR~~f~g----~R~ll~~  264 (267)
                      ||||||+++||||++|++    .|++..+
T Consensus       229 ivi~DN~r~lHgR~~f~~~~~~~R~L~r~  257 (262)
T cd00250         229 LLIFDNRRVLHGRTAFSPRYGGDRWLKGC  257 (262)
T ss_pred             EEEEechhhhcCCCCCCCCCCCceEEEEE
Confidence            999999999999999974    4665554

In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2

>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases

Probab=99.95  E-value=1.4e-28  Score=215.66  Aligned_cols=196  Identities=23%  Similarity=0.310  Sum_probs=140.4

Q ss_pred             EEeecCCCCCCcchhHHHHHhhhc----cccCcchh----------hhcccc-----CCccccccccccCCCCceEEEee
Q 024481           14 LLATRSCPTSAVLLPEATLLVEFL----LPMNLHLI----------VTFLFT-----RKWLWLERYMLLPQFPSKLFFFC   74 (267)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~~~~t-----~~~lwHtD~~y~~~~P~~~~l~c   74 (267)
                      ++-++|.|.+...+-++..++|.+    ...+.+.+          .+..++     ....||+|.+|.+.+|++++|+|
T Consensus        38 ~vvlrg~~~~~~~~~~~~~~~G~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~l~~HtD~~~~~~~p~~~~L~c  117 (258)
T PF02668_consen   38 FVVLRGFPLDPEQFEALASRLGPLMSHPRSTFYGDIWDVRSVIPEVEDSSYTPSSSNGELPWHTDGSYWPYPPDYLALYC  117 (258)
T ss_dssp             EEEEESCTSSHHHHHHHHHHHSEBEEESSSSECCSCEEEEEECTTEETTTTSTTT-SSGEEEE-TTTTSTTEESEEEEEE
T ss_pred             EEEEcCCCCCHHHHHHHHHhhCcccccccccccccccccccccccccccccCChhhhcccccccccCcccCCcceeEEEe
Confidence            566889998888899999999988    34332211          111222     23468999999999999999999


Q ss_pred             eecCCCCCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCc
Q 024481           75 EVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLK  154 (267)
Q Consensus        75 ~~~p~~GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~  154 (267)
                      +++|..||+|.|+|+.++|+.|+   |++++.|+ .++.|.+.......               .               
T Consensus       118 ~~~~~~GG~T~~~d~~~~~~~L~---pe~~~~L~-~~~~~~~~~~~~~~---------------~---------------  163 (258)
T PF02668_consen  118 LRPAEEGGETTFADARAVYERLS---PELLERLQ-EPVRYIRRFPSSRY---------------E---------------  163 (258)
T ss_dssp             EEEESSSSEEEEEEHHHHHHCSH---HHHHHHHC-TTEEEEEECGGSSG---------------S---------------
T ss_pred             eccCCCCCccccccHHHHHhhCC---HHHHhhhh-ceeeEeeccccccc---------------c---------------
Confidence            99999999999999999999999   99999998 48888765433110               0               


Q ss_pred             eEEccCCceEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEE
Q 024481          155 LEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVA  232 (267)
Q Consensus       155 ~~w~~dg~~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~  232 (267)
                           ..  . ....+|+|..||.+|++++|++.....+...         .    ..+...++++.|.+.+  .++++.
T Consensus       164 -----~~--~-~~~~~Piv~~~p~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~l~~~l~~~~~~~~  222 (258)
T PF02668_consen  164 -----EL--R-PSQSHPIVRTHPETGRKILYSSPFASRFQGP---------P----DLEESQEALAALDALLKDPEYTYR  222 (258)
T ss_dssp             -----CC--S-EEEEEESEEEETTTTCEEECESTTEEEETTS---------C----EHHHHHHHHHHHHHHHTSGGGEEE
T ss_pred             -----cc--C-CceEeeEEEEcCcccceeEecccceeeecCc---------C----ChHHHHHHHHHHHHHHhChhhccc
Confidence                 00  1 3458999999999999998877511111000         0    0122345666666655  679999


Q ss_pred             eeccCCCEEEEeCcccccccCCC---CCcceeeec
Q 024481          233 IPWQNGDVLLIDNLAVLHARRSS---SRPRHILAS  264 (267)
Q Consensus       233 ~~Wq~GDvli~DN~rvlHgR~~f---~g~R~ll~~  264 (267)
                      |+|++||++||||+++||||++|   .+.|.++.+
T Consensus       223 ~~~~~GDlli~dN~~~lHgR~~~~~~~~~R~L~R~  257 (258)
T PF02668_consen  223 HRWQPGDLLIWDNHRVLHGRTAFDDPDGDRHLLRV  257 (258)
T ss_dssp             EE--TTEEEEEETTTEEEEE--E-STTSSEEEEEE
T ss_pred             ccCCCceEEEEcCCeeEecCCCCCCCCCCEEEEEe
Confidence            99999999999999999999999   567776654

The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....

>COG2175 TauD Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=5.6e-26  Score=201.88  Aligned_cols=167  Identities=21%  Similarity=0.226  Sum_probs=117.4

Q ss_pred             cccccccccCCCCceEEEeeeecCCCCCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEE--EeccCCCCCCCCCCCc
Q 024481           55 LWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTR--IYQEKDDLTSPTGRGW  132 (267)
Q Consensus        55 lwHtD~~y~~~~P~~~~l~c~~~p~~GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~--~~~~~~~~~~~~~~~w  132 (267)
                      .||+|.+|.+.||.+.+|+|++.|..||+|.|+|+.+||+.|++   .+++.+.+..+.|..  .+....     ...++
T Consensus       100 ~wH~D~~f~~~~p~~~~l~~v~~P~~gg~T~f~d~~~A~~~L~~---~~r~~~~gl~~~h~~~~~~~~~~-----~~~~~  171 (286)
T COG2175         100 VWHTDVTFLETPPAGSILQAVELPSTGGDTLFADTAAAYETLPE---PLRELLRGLPAHHSNEERFPRER-----PSKTE  171 (286)
T ss_pred             cCcccceeecCCCceeEEEEeecCCCCCCceeechHHHHHhccH---HHHHHHhcchhcccccccccccc-----cCcCc
Confidence            69999999999999999999999999999999999999999995   357777766555541  011100     01111


Q ss_pred             cccccccCHHHHHHHHHhcCCceEEccCCceEEEEeeeCeeEecCCCCceEEeecc-chhccccccCCCCCCcccccCCC
Q 024481          133 KSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSI-VMAYTCWKDTQNDPVKAVTFGNG  211 (267)
Q Consensus       133 ~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~~~~~~~~P~v~~hP~TG~~~lfn~~-~~~~~~~~~~~~~~~~~~~~gdg  211 (267)
                      ...      ..+++        +.+      ..+...||+|++||+||++++|.+. ....+..              ..
T Consensus       172 ~p~------~~~~~--------~~~------~~~~~~~Pvvr~hP~~g~~~l~~n~~~~~~i~g--------------~~  217 (286)
T COG2175         172 RPH------ARFRE--------IVR------KNPPTEHPVVRTHPETGEKALFVNEGFTTRIVG--------------LP  217 (286)
T ss_pred             Ccc------chhhh--------hhc------cCCcccCceEEeCCCcCceeeeecCCcceeccC--------------CC
Confidence            110      00000        000      1145689999999999999976443 4444322              22


Q ss_pred             CCCcHHHHHHHHHHh--hccEEEeeccCCCEEEEeCcccccccCCCCCc-ceeee
Q 024481          212 SPYPEDIVYNLMKIL--EEECVAIPWQNGDVLLIDNLAVLHARRSSSRP-RHILA  263 (267)
Q Consensus       212 ~~~~~~~l~~l~~~~--~~~~~~~~Wq~GDvli~DN~rvlHgR~~f~g~-R~ll~  263 (267)
                      ...++++++.|.+..  ++++|+++||+||||||||+++||+|.+|.+. ||++-
T Consensus       218 ~~~~~~ll~~L~~~~~~pe~~~r~~wq~gDivIwDNr~~lH~a~~~~~~~~R~l~  272 (286)
T COG2175         218 PKESEALLAELQAHLTDPENQYRHRWQPGDIVIWDNRATLHAATAFYADQRRILH  272 (286)
T ss_pred             HHHHHHHHHHHHHhhcChhhEEEEecCCCCEEEEeCcceeeccccCCccceEEEE
Confidence            233456777777654  67999999999999999999999999999763 55543

>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]

Probab=99.93  E-value=5.1e-25  Score=195.87  Aligned_cols=199  Identities=19%  Similarity=0.224  Sum_probs=148.9

Q ss_pred             EEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCccc-cccccccCCCCceEEEeeeecCCC-CC
Q 024481           14 LLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKWLW-LERYMLLPQFPSKLFFFCEVEPVS-GG   82 (267)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~lw-HtD~~y~~~~P~~~~l~c~~~p~~-GG   82 (267)
                      +|-++|.|.+...+-.+.+|+|||+.|..|..         .++||.++.|+ |||++|.+.+|++++|||++..++ ||
T Consensus       165 iA~lkGAP~~~~~v~kl~~RiG~irrT~yGe~F~V~ak~~asn~Ay~~~~LPlHTD~P~le~~PgvqiLH~l~qtes~gg  244 (407)
T KOG3888|consen  165 IAFLKGAPLDSGVVRKLGERIGFIRRTTYGETFEVQAKPDASNYAYLAGPLPLHTDLPYLEYPPGVQILHCLVQTESPGG  244 (407)
T ss_pred             eEEEecCCCCchHHHHHHhhhcceeeeeccceEEEeecCCcccceeecCCCCcccCCcccccCCcceeeeeehhccCCCC
Confidence            67789999999999999999999999998885         67789999999 999999999999999999999987 99


Q ss_pred             CCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCc
Q 024481           83 DTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGG  162 (267)
Q Consensus        83 eT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~  162 (267)
                      ...|+|++.|.+.|++++||.++.|...+|-|.--   +.|..        ..+                 +|    .  
T Consensus       245 ~n~lvDgF~Va~~lr~~~pE~FeiL~~~pVd~~di---g~D~~--------~~~-----------------~f----h--  290 (407)
T KOG3888|consen  245 MNLLVDGFYVAEQLRESHPEAFEILSSVPVDWIDI---GSDGD--------YYI-----------------EF----H--  290 (407)
T ss_pred             cceehhhHHHHHHHHhhCHHHHHHHhhcceeeEee---cCCcc--------ccc-----------------ch----h--
Confidence            99999999999999999999999999988877522   11100        000                 00    0  


Q ss_pred             eEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCCcH-------HHHHHHHHHhhc--cEEEe
Q 024481          163 VKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPE-------DIVYNLMKILEE--ECVAI  233 (267)
Q Consensus       163 ~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~-------~~l~~l~~~~~~--~~~~~  233 (267)
                         .-..+|+|..+-+ |+-.-.|........            .|    ..|.       +.|+.+.+.+.+  +.++|
T Consensus       291 ---~i~r~~vI~ld~e-gr~~rIN~s~~~Rds------------~f----dvp~e~v~~~y~a~~~F~~~~~~~~n~~~f  350 (407)
T KOG3888|consen  291 ---NIWRAPVICLDDE-GRVVRINFSNPQRDS------------IF----DVPVEQVQPWYRALKLFVELANSFSNQFRF  350 (407)
T ss_pred             ---hhhcCceEEEccc-ceEEEEecCCccccc------------cc----cCCHHHHHHHHHHHHHHHHHHhCcccceEE
Confidence               1136777777766 664322221111000            01    1222       244444444433  45999


Q ss_pred             eccCCCEEEEeCcccccccCCCCC----cceeeeccc
Q 024481          234 PWQNGDVLLIDNLAVLHARRSSSR----PRHILASLC  266 (267)
Q Consensus       234 ~Wq~GDvli~DN~rvlHgR~~f~g----~R~ll~~~~  266 (267)
                      +.++||+|+|||+|++|||++|+.    .|++.+|-.
T Consensus       351 k~~~gdvv~FnN~RlLHgr~gy~~~~en~R~L~GaY~  387 (407)
T KOG3888|consen  351 KTPPGDVVTFNNLRLLHGRTGYEDTPENQRHLVGAYF  387 (407)
T ss_pred             ECCCCCEEEEcceeeeccccccccCccccceeeeeEe
Confidence            999999999999999999999953    788888754

>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]

Probab=99.92  E-value=1.4e-24  Score=187.12  Aligned_cols=194  Identities=19%  Similarity=0.200  Sum_probs=152.4

Q ss_pred             EEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCccc-cccccccCCCCceEEEeeeecCCCCCC
Q 024481           14 LLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKWLW-LERYMLLPQFPSKLFFFCEVEPVSGGD   83 (267)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~lw-HtD~~y~~~~P~~~~l~c~~~p~~GGe   83 (267)
                      ++-++|+|...+.-+.+..++-+++.+.||..         ...+||...+- |||.+|...+|++++|||+..+.+||+
T Consensus       139 i~fvd~V~pT~e~TEkl~~r~~pv~~TffG~mW~Fsd~p~~~DTAYtkl~lg~HTD~TYF~~~~GiQvfHCl~h~gtGG~  218 (371)
T KOG3889|consen  139 IIFVDGVEPTSEATEKLCQRLVPVHDTFFGQMWVFSDEPAYEDTAYTKLELGPHTDGTYFDQTPGIQVFHCLTHAGTGGD  218 (371)
T ss_pred             EEEEcCCCchhHHHHHHHHHhhHHHHhhhheeEEecCCCccccccceeeeecccCCCceeccCCCceEEEeecccCCCCc
Confidence            56789999898888899999999999999985         44567776665 999999999999999999999999999


Q ss_pred             CcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCce
Q 024481           84 TPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGV  163 (267)
Q Consensus        84 T~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~  163 (267)
                      |.|+|++.+.+.|..+.||-++.|++.++...  +-++..                                    +-..
T Consensus       219 t~lVDgfy~ae~l~~~~Pe~feiLc~v~i~he--YiE~~g------------------------------------e~h~  260 (371)
T KOG3889|consen  219 TVLVDGFYCAEKLRNESPEDFEILCNVKISHE--YIEGSG------------------------------------ESHI  260 (371)
T ss_pred             eEEEehHHHHHHHHhhChHhhhHhhcCccchh--hhcCCC------------------------------------cccc
Confidence            99999999999999999999999997665442  111100                                    0000


Q ss_pred             EEEEeeeCeeEecCCCCceE--EeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh---------hccEEE
Q 024481          164 KTVLGPIPAVTYDKIRQRKI--WFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL---------EEECVA  232 (267)
Q Consensus       164 ~~~~~~~P~v~~hP~TG~~~--lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~---------~~~~~~  232 (267)
                      . ....-|+|...|-+|+..  -||.-...-+                  ..+|.+++.++++++         +++.+.
T Consensus       261 H-~v~~~p~v~~~p~~~e~~qiR~N~YDRAvf------------------nt~p~ae~~~fY~a~r~l~~i~r~p~n~~~  321 (371)
T KOG3889|consen  261 H-SVSLEPPVIERPSFGEITQIRFNPYDRAVF------------------NTLPAAETIKFYEAYRKLSKICRNPDNSIE  321 (371)
T ss_pred             e-eeccCCceEecCCCCceEEEEecccchhhh------------------ccCCHHHHHHHHHHHHHHHHHhcCccceEE
Confidence            1 112458899999999854  3443211111                  146677777776655         568999


Q ss_pred             eeccCCCEEEEeCcccccccCCCCCcceeeec
Q 024481          233 IPWQNGDVLLIDNLAVLHARRSSSRPRHILAS  264 (267)
Q Consensus       233 ~~Wq~GDvli~DN~rvlHgR~~f~g~R~ll~~  264 (267)
                      ++++||-|+++||+||+|||+.|+|.|.+.++
T Consensus       322 ikL~PGsvifiDNwRvLHgRe~ftGyRqmcGc  353 (371)
T KOG3889|consen  322 IKLRPGSVIFIDNWRVLHGRESFTGYRQMCGC  353 (371)
T ss_pred             EEecCceEEEEeceeEecCcccccchhhhcce
Confidence            99999999999999999999999999998775

>PRK02963 carbon starvation induced protein; Validated

Probab=99.89  E-value=9.2e-23  Score=181.93  Aligned_cols=172  Identities=16%  Similarity=0.153  Sum_probs=121.5

Q ss_pred             CCcchhHHHHHhhh-ccccCcchhh----------------hccccCC--ccccccccccCCCCceEEEeeeec-CCCCC
Q 024481           23 SAVLLPEATLLVEF-LLPMNLHLIV----------------TFLFTRK--WLWLERYMLLPQFPSKLFFFCEVE-PVSGG   82 (267)
Q Consensus        23 ~~~~~~~~~~~~~~-~~~~~~~~~~----------------~~~~t~~--~lwHtD~~y~~~~P~~~~l~c~~~-p~~GG   82 (267)
                      ..+.+..++.++++ |+++|++..-                ++++++.  .-+|||.+|...||++++|+|... ..+||
T Consensus       101 ~~~~~~~l~~~i~~~I~~t~fg~m~g~~ya~F~Vk~~~~~~~ya~~a~t~L~lHTD~pY~e~pPGlQlLl~~~~~~~~GG  180 (316)
T PRK02963        101 QADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEEITDYVLMMKIDEQNMQGG  180 (316)
T ss_pred             CHHHHHHHHHHhhhccCCCCccccccceeeEEEEEecCCccchhhhhccCCCCcCCCCCccCCCCceeeeeeccCCCCCc
Confidence            56667899999999 9999998752                3334442  346999999999999987777765 47899


Q ss_pred             CCcce--eHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccC
Q 024481           83 DTPLV--LSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMED  160 (267)
Q Consensus        83 eT~~a--D~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~d  160 (267)
                      +|.|+  |++++++.|++ +|     |.+.+|.|......                                       +
T Consensus       181 eS~lVhvDGF~vAe~Lr~-~P-----Lt~~pV~~~~~~~~---------------------------------------~  215 (316)
T PRK02963        181 NSLLLHLDDWEHLDHFFR-HP-----LARRPMRWAAPPSK---------------------------------------N  215 (316)
T ss_pred             CeeeEcCCcHHHHHHHHh-Cc-----CcCCceeeeecCCC---------------------------------------c
Confidence            99998  99999999996 77     88888877521110                                       0


Q ss_pred             CceEEEEeeeCeeEecCCCCceE-EeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEEeeccC
Q 024481          161 GGVKTVLGPIPAVTYDKIRQRKI-WFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQN  237 (267)
Q Consensus       161 g~~~~~~~~~P~v~~hP~TG~~~-lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq~  237 (267)
                        .. ....+|+|..++. |+.. -||.... .          |       -+.+....+..+.+.+  +++++.++++|
T Consensus       216 --~~-~~~~~PVI~lD~~-G~l~ir~nd~~~-~----------P-------~~~~~~~Y~~~f~~~L~~p~~~~~fkL~p  273 (316)
T PRK02963        216 --VS-KDVFHPVFDVDQQ-GRPVMRYIDQFV-Q----------P-------KDFEEGVWLSELSDALETSKGILSVPVPV  273 (316)
T ss_pred             --cc-eeeecceEEECCC-CCEEEEEcCCCC-C----------C-------hHHHHHHHHHHHHHHHhCchhEEEEecCC
Confidence              00 2347899999874 8865 2331100 0          0       0011122244444433  56899999999


Q ss_pred             CCEEEEeCcccccccCCCCC----ccee
Q 024481          238 GDVLLIDNLAVLHARRSSSR----PRHI  261 (267)
Q Consensus       238 GDvli~DN~rvlHgR~~f~g----~R~l  261 (267)
                      ||+|++||+|+||||.+|+|    .|++
T Consensus       274 Gd~vvfDN~RVLHGR~aF~~~~g~~R~L  301 (316)
T PRK02963        274 GKFLLINNLFWLHGRDRFTPHPDLRREL  301 (316)
T ss_pred             ceEEEEeCeEEeeCCCCcCCCCCCceEE
Confidence            99999999999999999963    5666

>PF08943 CsiD: CsiD; InterPro: IPR015038 This group of proteins consists of various bacterial proteins pertaining to the non-haem Fe(II)-dependent oxygenase family

Probab=98.22  E-value=4.4e-06  Score=72.61  Aligned_cols=142  Identities=15%  Similarity=0.205  Sum_probs=66.0

Q ss_pred             ccccccccCCCCceEEEe-eeecCCCCCCCcceeHHHHHHHhhhhChHHH-HHHHhCCeEEEEEeccCCCCCCCCCCCcc
Q 024481           56 WLERYMLLPQFPSKLFFF-CEVEPVSGGDTPLVLSHIVYERMKESYPEFV-QQLEQDGLIYTRIYQEKDDLTSPTGRGWK  133 (267)
Q Consensus        56 wHtD~~y~~~~P~~~~l~-c~~~p~~GGeT~~aD~~~~y~~L~~~~Pel~-~~L~~~~v~~~~~~~~~~~~~~~~~~~w~  133 (267)
                      -|+|.+|.....++++.. ..+.-.+||+|.+...-. |++|.    .++ .-|.+..+.|..  |.+            
T Consensus       140 LHnDGTyV~E~TD~vLMmKidEqN~~GG~S~lLHLDD-We~ld----~f~~hplak~~~~w~a--P~S------------  200 (297)
T PF08943_consen  140 LHNDGTYVDERTDWVLMMKIDEQNMEGGESLLLHLDD-WEDLD----KFYNHPLAKQPFVWGA--PPS------------  200 (297)
T ss_dssp             EE-S-TTSSS---EEEEEEEEEES--B--EEEEEGGG--TTHH----HHHTSGGGGS-EEE----SS-------------
T ss_pred             eecCCceeccccceeeeeeehhhhccCcceeeeeccc-HHHHH----HHhcCcccccceeecC--CCC------------
Confidence            399999999999997666 456677899999876322 34442    222 235555554431  110            


Q ss_pred             ccccccCHHHHHHHHHhcCCceEEccCCceEEEEeeeCe-eEecCCCCceE-EeeccchhccccccCCCCCCcccccCCC
Q 024481          134 SIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPA-VTYDKIRQRKI-WFNSIVMAYTCWKDTQNDPVKAVTFGNG  211 (267)
Q Consensus       134 ~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~~~~~~~~P~-v~~hP~TG~~~-lfn~~~~~~~~~~~~~~~~~~~~~~gdg  211 (267)
                                                .+  ......||+ +..+-. |+++ .|..... .          |.+.     
T Consensus       201 --------------------------KN--v~~~v~hpvFF~~d~~-g~P~m~fIDQF~-q----------P~n~-----  235 (297)
T PF08943_consen  201 --------------------------KN--VSYDVEHPVFFEEDSN-GKPHMSFIDQFV-Q----------PKNM-----  235 (297)
T ss_dssp             --------------------------TT------EEE-S-EEE-TT-S-EEE---TTTE-E------------SH-----
T ss_pred             --------------------------cc--ccceeeccccccccCC-CCeeEEEeeccC-C----------CCcH-----
Confidence                                      00  002347899 556655 8886 3432110 0          0000     


Q ss_pred             CCCcHHHHHHHHHHhh--ccEEEeeccCCCEEEEeCcccccccCCCCC----cceeee
Q 024481          212 SPYPEDIVYNLMKILE--EECVAIPWQNGDVLLIDNLAVLHARRSSSR----PRHILA  263 (267)
Q Consensus       212 ~~~~~~~l~~l~~~~~--~~~~~~~Wq~GDvli~DN~rvlHgR~~f~g----~R~ll~  263 (267)
                        .....|..|.+.++  +.++.++.-+|++|+++|+..||||.+|+.    .|.+|.
T Consensus       236 --eeg~~L~~ls~slE~s~~~~~v~vpvG~~lv~NN~fwLHGR~~F~~~~~L~RELmR  291 (297)
T PF08943_consen  236 --EEGLYLNELSESLENSKNKFSVPVPVGSFLVINNHFWLHGRDKFEPHPGLRRELMR  291 (297)
T ss_dssp             --HHHHHHHHHHHHHHT-TT-EEE---TT-EEEEETTTEEEEE--B---TT-EEEEEE
T ss_pred             --HHHHHHHHHHHHHhcCCCeEEEEcCCCcEEEEeeEEEEeccCCCCCChhHHHHHHH
Confidence              01235666666654  579999999999999999999999999954    465653

CsiD of Escherichia coli is induced on carbon starvation. Its expression is sigma-S dependent and additionally requires activation by cAMP-CRP []. The exact function and role of CsiD is unknown, but a putative role may involve the control of utilisation of gamma-aminobutyric acid and glutamate accumulation in general stress adaption []. ; GO: 0005506 iron ion binding; PDB: 2R6S_A 1JR7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
1y0z_A	330	X-Ray Structure Of Gene Product From Arabidopsis Th		2e-85

>pdb|1Y0Z|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g21360 Length = 330

Iteration: 1
 Score =  311 bits (798), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 138/203 (67%), Positives = 170/203 (83%)
Query: 65  QFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDL 124
           +FPSKLFF+CE+EP  GG+TP+VLSH+VYERMK+ +PEFVQ+LE+ GL+Y R+  E DD 
Sbjct: 128 EFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDP 187
Query: 125 TSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW 184
           +SP GRGWKS FLT DK+LAE+RA +LG+KLEW EDGG KTV+GPIPA+ YD+ R RK+W
Sbjct: 188 SSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKVW 247
Query: 185 FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLID 244
           FNS+V AYT W+D +NDP KAVTFG+G P P DIV++ ++ILEEECVA+PWQ GDVLLID
Sbjct: 248 FNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLID 307
Query: 245 NLAVLHARRSSSRPRHILASLCK 267
           N AVLH+RR    PR +LASLCK
Sbjct: 308 NWAVLHSRRPFDPPRRVLASLCK 330

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
2q4a_A	330	Clavaminate synthase-like protein AT3G21360; ensem	1e-54
2og5_A	357	Putative oxygenase; non-ribosomal peptide synthesi	8e-06
1ds1_A	324	Clavaminate synthase 1; oxygenase, trifunctional e	3e-05
2wbq_A	358	L-arginine beta-hydroxylase; oxidoreductase, non-h	1e-04

>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha-ketoglutarat dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A* Length = 357

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 220 YNLMKILEEECVAIPWQNGDVLLIDNLAVLHAR-----RSSSRPRHIL 262
             L    +   V      G++ ++DN   +H R     R     R + 
Sbjct: 281 RELQAHFDATAVTHRLLPGELAIVDNRVTVHGRTEFTPRYDGTDRWLQ 328

>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme, oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces clavuligerus} SCOP: b.82.2.2 PDB: 1drt_A* 1ds0_A 1dry_A* 1gvg_A* Length = 324

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 220 YNLMKILEEECVAIPWQNGDVLLIDNLAVLHAR-----RSSSRPRHIL 262
             L K L+E   A+  + GD+L++DN    HAR     R   + R + 
Sbjct: 249 AALSKALDEVTEAVYLEPGDLLIVDNFRTTHARTPFSPRWDGKDRWLH 296

>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A* Length = 358

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 222 LMKILEEECVAIPWQNGDVLLIDNLAVLHAR-----RSSSRPRHIL 262
           L K+++     +    GDV  IDN   +H R     R   R R + 
Sbjct: 288 LRKLIDASLYELVLDQGDVAFIDNRRAVHGRRAFQPRYDGRDRWLK 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
2q4a_A	330	Clavaminate synthase-like protein AT3G21360; ensem	100.0
1oih_A	301	Putative alkylsulfatase ATSK; non-heme Fe(II) alph	100.0
3eat_X	293	Pyoverdine biosynthesis protein PVCB; paerucumarin	99.98
1nx8_A	273	CARC, carbapenem synthase; jelly roll, unknown fun	99.97
3r1j_A	301	Alpha-ketoglutarate-dependent taurine dioxygenase;	99.97
1otj_A	283	Alpha-ketoglutarate-dependent taurine dioxygenase;	99.97
3o2g_A	388	Gamma-butyrobetaine dioxygenase; gamma-butyrobetai	99.97
3pvj_A	277	Alpha-ketoglutarate-dependent taurine dioxygenase;	99.97
2og5_A	357	Putative oxygenase; non-ribosomal peptide synthesi	99.93
1ds1_A	324	Clavaminate synthase 1; oxygenase, trifunctional e	99.92
2wbq_A	358	L-arginine beta-hydroxylase; oxidoreductase, non-h	99.9
1jr7_A	311	GABT protein, hypothetical 37.4 kDa protein in ILE	99.9
3nnf_A	344	CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen	85.23

>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*

Probab=100.00  E-value=2.9e-35  Score=264.13  Aligned_cols=210  Identities=16%  Similarity=0.144  Sum_probs=142.6

Q ss_pred             EEeecCCC-CCCcchhHHHHHhhhccccCcch-hh--hcccc-------CCccccccccccCCCCceEEEeeeecCCCCC
Q 024481           14 LLATRSCP-TSAVLLPEATLLVEFLLPMNLHL-IV--TFLFT-------RKWLWLERYMLLPQFPSKLFFFCEVEPVSGG   82 (267)
Q Consensus        14 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~t-------~~~lwHtD~~y~~~~P~~~~l~c~~~p~~GG   82 (267)
                      ++-++|.| .+...+.+++.++|.+...++.. ..  ..+++       ....||+|++|.+.||.+++|+|+++|++||
T Consensus        54 vv~fRg~~~l~~~~~~~~~~~fG~l~~~~~~~~~~~~~~v~~v~~~~~~~~~~wHtD~sy~~~pP~~~~L~c~~~p~~GG  133 (301)
T 1oih_A           54 VIFFRGQTHLDDQSQEGFAKLLGEPVAHPTVPVVDGTRYLLQLDGAQGQRANSWHTDVTFVEAYPKASILRSVVAPASGG  133 (301)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBCC----CCCTTCSSCEEEC-----CCCSCBCTTTTSSSCCSEEEEEEEECCSSCC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCCccCcCCCCCCCCCceEEEecCCCCcCcCCEecccCcCCCCceEEEEEeecCCCCC
Confidence            66789999 77888889999999987554321 10  01111       1345999999999999999999999999999


Q ss_pred             CCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCc
Q 024481           83 DTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGG  162 (267)
Q Consensus        83 eT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~  162 (267)
                      +|.|||+++||+.|+   ++++++|+.+.+.|...+..        +..|+..  +++  ++++.+       +|..++.
T Consensus       134 ~T~~ad~~~ay~~L~---~~~~~~~~~l~~~~~~~~~~--------~~~~~~~--~~~--~~~~~~-------~~~~~~~  191 (301)
T 1oih_A          134 DTVWANTAAAYQELP---EPLRELADKLWAVHSNEYDY--------ASLKPDI--DPA--KLERHR-------KVFTSTV  191 (301)
T ss_dssp             CEEEEEHHHHHHTSC---HHHHHHHHHCEEEEECC--------------------------------------------C
T ss_pred             ccccccHHHHHHhCC---HHHHHHHhcCEEEEcccccc--------ccccccc--ccc--hhhhhh-------hhhhccC
Confidence            999999999999999   67888888777666532211        1234322  111  223222       2444442


Q ss_pred             eEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEEeeccCCCE
Q 024481          163 VKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQNGDV  240 (267)
Q Consensus       163 ~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq~GDv  240 (267)
                         ....||+|++||+||+++||++....++.              |...+.++++|+.|.+.+  ++++|+|+|++|||
T Consensus       192 ---~~~~hPvV~~hP~tG~~~l~~~~~~~~i~--------------gl~~~e~~~ll~~l~~~~~~~~~~~~~~w~~GDv  254 (301)
T 1oih_A          192 ---YETEHPVVRVHPISGERALQLGHFVKRIK--------------GYSLADSQHLFAVLQGHVTRLENTVRWRWEAGDV  254 (301)
T ss_dssp             ---CEEEEESEEECTTTCCEEECCSTTEEEET--------------TSCHHHHHHHHHHHHHHHTSGGGEEEECCCTTCE
T ss_pred             ---CceECCCEEecCCCCcEEEEeccCccccc--------------CCCHHHHHHHHHHHHHHHhCccceEEEEEcCCCE
Confidence               34589999999999999999873333332              222244567778887755  88999999999999


Q ss_pred             EEEeCcccccccCCCCC-cceee
Q 024481          241 LLIDNLAVLHARRSSSR-PRHIL  262 (267)
Q Consensus       241 li~DN~rvlHgR~~f~g-~R~ll  262 (267)
                      |||||+++||+|++|+| .||+|
T Consensus       255 vi~DNr~~lH~r~~f~~~~~R~l  277 (301)
T 1oih_A          255 AIWDNRATQHYAVDDYGTQPRIV  277 (301)
T ss_dssp             EEEETTSEEEEECCCCTTSCCEE
T ss_pred             EEEEccceeecccCCCCCCceEE
Confidence            99999999999999976 24444

>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa}

Probab=99.98  E-value=2.5e-32  Score=244.51  Aligned_cols=202  Identities=16%  Similarity=0.189  Sum_probs=141.8

Q ss_pred             EEeecCCC--CCCcchhHHHHHhhhccccCcchh---------hhccccCCc-cccccccccCCCCceEEEeeeecCC--
Q 024481           14 LLATRSCP--TSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKW-LWLERYMLLPQFPSKLFFFCEVEPV--   79 (267)
Q Consensus        14 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~-lwHtD~~y~~~~P~~~~l~c~~~p~--   79 (267)
                      ++-++|.|  .+...+.+++.++|.++...++.+         .+.+||+.. .||+|++|.+.||.+++|+|+++|+  
T Consensus        57 vv~fRgq~~l~~~~~~~~~a~~fG~l~~~~~g~~~~v~~~~~~~~~~yt~~~~~wHtD~sy~~~pp~~~~L~c~~~p~~~  136 (293)
T 3eat_X           57 LLLLRGFAAFADAESLTRYCHDFGEVMLWPFGAVLELVEQEGAEDHIFANNYVPLHWDGMYLETVPEFQVFHCVDAPGDS  136 (293)
T ss_dssp             EEEECSCBCCSSHHHHHHHHHHHSCBCCBTTBSCEEEEECTTCCCTTTSCSCEEEECTTTTSSEEEEEEEEEEEECCSCC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHhCCCccccccCeEEEEeCCCcccccccCCCccceECCCCcCCCCceEEEEeEeCCCCC
Confidence            56789998  377778899999999987766543         234677643 5899999999999999999999998  


Q ss_pred             CCCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEcc
Q 024481           80 SGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWME  159 (267)
Q Consensus        80 ~GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~  159 (267)
                      .||+|.|||+++||+.|+   |+++++|++..+.|.... .              .++...          ....++-.+
T Consensus       137 ~GG~T~~~d~~~ay~~L~---~~~~~~l~~~~~~~~~~~-~--------------~~~~~~----------~~p~~~~~~  188 (293)
T 3eat_X          137 DGGRTTFSSTPAALQLAD---SSELELWRRASGRYQRSA-A--------------HYSSRS----------AAPIVERHP  188 (293)
T ss_dssp             SBCCEEEEEHHHHHHHCC---HHHHHHHHHCEEEEECC--------------------CEE----------EEESEEECT
T ss_pred             CCCceEEeeHHHHHHhCC---HHHHHHHhhCceEEEecc-c--------------cccCcc----------CCceEEECC
Confidence            899999999999999999   899999999888775210 0              000000          000011111


Q ss_pred             CCceEEEEeeeCeeEe-cCCCCceEEeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEEeecc
Q 024481          160 DGGVKTVLGPIPAVTY-DKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQ  236 (267)
Q Consensus       160 dg~~~~~~~~~P~v~~-hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq  236 (267)
                             ...||+|++ ||+||++++|.+.....+              .|...+.++++++.|.+.+  ++++|+|+|+
T Consensus       189 -------~~~hp~Vr~~hP~tG~k~L~v~~~~~~i--------------~g~~~~es~~ll~~L~~~~~~p~~~~~~~w~  247 (293)
T 3eat_X          189 -------RREFPILRFCEPPVEGDASFINPSEFHY--------------DGIAPEQRGELLASLRRCLYHPQAHYAHRWR  247 (293)
T ss_dssp             -------TTCCEEECCCCCC----------CCEEE--------------ESSCTTTHHHHHHHHHHHHTSTTTEEEECCC
T ss_pred             -------CCCcceEEecCCCCcccceecCcccccc--------------CCCCHHHHHHHHHHHHHHHhCcccEEEEEcC
Confidence                   237999999 899999998755444443              2333456778888887654  5799999999


Q ss_pred             CCCEEEEeCcccccccCCCCC-cceeeec
Q 024481          237 NGDVLLIDNLAVLHARRSSSR-PRHILAS  264 (267)
Q Consensus       237 ~GDvli~DN~rvlHgR~~f~g-~R~ll~~  264 (267)
                      +||||||||+++||+|.+|.+ .+|+|-+
T Consensus       248 ~GDlviwDNr~vlH~r~~~~~~~~R~l~R  276 (293)
T 3eat_X          248 SDDLVIADNLTLLHGREAFAHRAPRHLRR  276 (293)
T ss_dssp             TTCEEEEETTTEEEEECCBSSCCCEEEEE
T ss_pred             CCCEEEEeCCceEEcccCCCCCCceEEEE
Confidence            999999999999999999964 4454443

>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A*

Probab=99.97  E-value=4.8e-32  Score=239.73  Aligned_cols=196  Identities=15%  Similarity=0.153  Sum_probs=139.5

Q ss_pred             EEeecCCCCCCcchhHHHHHhhhcccc---------Ccchh---h----hccccC-CccccccccccCCCCceEEEeeee
Q 024481           14 LLATRSCPTSAVLLPEATLLVEFLLPM---------NLHLI---V----TFLFTR-KWLWLERYMLLPQFPSKLFFFCEV   76 (267)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~----~~~~t~-~~lwHtD~~y~~~~P~~~~l~c~~   76 (267)
                      ++-++|.|.+...+.+++.++|.+..-         ..+.+   .    +.+|+. ...||+|.+|.+.||++++|+|++
T Consensus        41 ~v~~rg~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~HtD~sy~~~pp~~~~L~c~~  120 (273)
T 1nx8_A           41 FVVVKNLDIDSDTFRDIYSAYGTIVEYADEKIGVGFGYRDTLKLEGEKGKIVTGRGQLPFHADGGLLLSQVDQVFLYAAE  120 (273)
T ss_dssp             EEEECSCCCCHHHHHHHHHTTSEECCC-----------CCSEEECCCTTCSTTSSSCEEEECTTTTTTCCCCEEEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCccccccccccCCCCCCceEEecCCCCCccccccCCCCcCCCCCccCCCeeEEEEeEe
Confidence            567899998888888999999988751         11221   1    122233 345899999999999999999999


Q ss_pred             cCC--CCCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCc
Q 024481           77 EPV--SGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLK  154 (267)
Q Consensus        77 ~p~--~GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~  154 (267)
                      +|+  +||+|.|||+++||+.|+   ++.++.|+.+...|...  .         .+|+..++.                
T Consensus       121 ~p~~~~GG~T~~~d~~~a~~~L~---~~~~~~l~~l~~~~~~~--~---------~~~~~~~~~----------------  170 (273)
T 1nx8_A          121 IKNVKFRGATTVCDHALACQEMP---AHLLRVLEEETFEVRVL--E---------RGYYVDVSP----------------  170 (273)
T ss_dssp             EESCSSSSCEEEEEHHHHHHHSC---HHHHHHHHHSCEEEEEC-------------------------------------
T ss_pred             CCCCCCCCcchhhhHHHHHHhCC---HHHHHHHhhcEEEEech--h---------cccccCCCc----------------
Confidence            999  999999999999999999   55666677666555311  0         011111100                


Q ss_pred             eEEccCCceEEEEeeeCeeEecCCCCceEEee-------cc-chhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh
Q 024481          155 LEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFN-------SI-VMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL  226 (267)
Q Consensus       155 ~~w~~dg~~~~~~~~~P~v~~hP~TG~~~lfn-------~~-~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~  226 (267)
                           +     ....+|+ ++||+||+++||+       +. ....+              .|...+.++++|+.|.+.+
T Consensus       171 -----~-----~~~~~Pv-~~hp~tG~~~l~~~r~~~~~~~~~~~~i--------------~~~~~~e~~~~l~~l~~~~  225 (273)
T 1nx8_A          171 -----D-----GWFKVPV-FTDLGWVRKMLIYFPFDEGQPASWEPRI--------------VGFTDHETQAFFQELGAFL  225 (273)
T ss_dssp             ------------CEECCS-EEECSSCEEECCBCCCCTTSCCSEEEEE--------------TTCCHHHHHHHHHHHHHHH
T ss_pred             -----c-----cccCCCC-ccCCCCCceeEEeeeeccccCccccccC--------------CCCCHHHHHHHHHHHHHHh
Confidence                 0     1136899 9999999999876       43 22222              1222245577888888877


Q ss_pred             --hccEEEeeccCCCEEEEeCcccccccCCCCC--cceeeec
Q 024481          227 --EEECVAIPWQNGDVLLIDNLAVLHARRSSSR--PRHILAS  264 (267)
Q Consensus       227 --~~~~~~~~Wq~GDvli~DN~rvlHgR~~f~g--~R~ll~~  264 (267)
                        ++++++|+|++||||||||+++||||++|++  .+|+|.+
T Consensus       226 ~~~~~~~~~~w~~GD~~i~DN~~vlH~R~~f~~~~~~R~l~R  267 (273)
T 1nx8_A          226 KQPRYYYKHFWEDGDLLIMDNRRVIHEREEFNDDDIVRRLYR  267 (273)
T ss_dssp             TSTTTEEEECCCTTCEEEEETTTEEEEECCCCCTTCEEEEEE
T ss_pred             cCCceEEEeEecCCCEEEEECCeeeeccccCCCCCCCeEEEE
Confidence              7899999999999999999999999999975  4555543

>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid, oxidoreductase, structural genomics; 2.05A {Mycobacterium avium} SCOP: b.82.2.0 PDB: 3swt_A

Probab=99.97  E-value=7.9e-32  Score=241.95  Aligned_cols=208  Identities=13%  Similarity=0.127  Sum_probs=136.8

Q ss_pred             EEeecCC-CCCCcchhHHHHHhhhccccCc----------ch-hhhccccCCccccccccccCCCCceEEEeeeecCCCC
Q 024481           14 LLATRSC-PTSAVLLPEATLLVEFLLPMNL----------HL-IVTFLFTRKWLWLERYMLLPQFPSKLFFFCEVEPVSG   81 (267)
Q Consensus        14 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~t~~~lwHtD~~y~~~~P~~~~l~c~~~p~~G   81 (267)
                      ++-++|. +.+.....+++.++|.+...+.          +. ...+.++....||+|++|.+.||.+++|+|+++|+.|
T Consensus        48 vv~fR~q~~l~~~~~~~fa~~fG~l~~hp~~~~~~~~~~pei~~i~~~~~~~~~wH~D~s~~~~pp~~~~l~~~~~p~~G  127 (301)
T 3r1j_A           48 VIFFRHQHHLDDSRQLEFARLLGTPIGHPAASALAAKHLPVITPIDSEYGKATRWHTDVTFAANYPAASILRAVTLPSYG  127 (301)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHSCBBC------------------------CCSCBCTTTTSSSCCSEEEEEEEECCSSC
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCCccccccccCCCCCCCCcEEEEeCCCCCCCCCccccCCccCCCceeEEEEeecCCCC
Confidence            5667888 8788888899999999864332          11 1122344456799999999999999999999999999


Q ss_pred             CCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCC
Q 024481           82 GDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDG  161 (267)
Q Consensus        82 GeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg  161 (267)
                      |+|.|||+++||+.|+   +++++.|+.+.+.+.......          +.. ......   +..    +.  ++....
T Consensus       128 G~T~fad~~~ay~~L~---~~~~~~~~~l~a~h~~~~~~~----------~~~-~~~~~~---~~~----~~--~~~~~~  184 (301)
T 3r1j_A          128 GSTLWASTVAAYQQLP---EPLRHLTENLWALHTNRYDYV----------RND-PMNDTQ---RAF----RQ--AFEKPD  184 (301)
T ss_dssp             CCEEEEEHHHHHHTCC---HHHHHHHTTCEEEEECC------------------------------------------CC
T ss_pred             CCCeeEcHHHHHHhCC---HHHHHHHhcCEEEEcchhhhh----------hhc-cccccc---hhh----cc--cccccC
Confidence            9999999999999999   788888886655554111000          000 000000   000    00  000010


Q ss_pred             ceEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEEeeccCCC
Q 024481          162 GVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQNGD  239 (267)
Q Consensus       162 ~~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq~GD  239 (267)
                          ....||+|++||+||++++|.+.+...+.              |...+.++++|+.|.+.+  ++++|+|+|++||
T Consensus       185 ----~~~~hPvVr~hP~TG~k~L~v~~~~~~i~--------------gl~~~Es~~lL~~L~~~~~~pe~~~r~~W~~GD  246 (301)
T 3r1j_A          185 ----FRTEHPVVRVHPETGERALLAGDFVRGFV--------------GLDGHESSVLLELLQRRITMPENTVRWSWAPGD  246 (301)
T ss_dssp             ----CEEEEESEEECTTTCCEEECCSTTEEEET--------------TSCHHHHHHHHHHHHHHHTCGGGEEEECCCTTC
T ss_pred             ----CccccceEEECCCCCCeEEEecccccccc--------------CCCHHHHHHHHHHHHHHhcCCCeEEEeeeCCCC
Confidence                23479999999999999987633333332              222344567777776643  6899999999999


Q ss_pred             EEEEeCcccccccCCC-CCcceee
Q 024481          240 VLLIDNLAVLHARRSS-SRPRHIL  262 (267)
Q Consensus       240 vli~DN~rvlHgR~~f-~g~R~ll  262 (267)
                      ||||||+++||+|..+ .+.+|++
T Consensus       247 lviwDNr~~lH~a~~d~~~~~R~~  270 (301)
T 3r1j_A          247 VAMWDNRATQHRAIDDYDDQPRLM  270 (301)
T ss_dssp             EEEEETTSEEEEECCCSTTCCCEE
T ss_pred             EEEEEcCceeecccCCCCCCCeEE
Confidence            9999999999999864 3434444

>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A

Probab=99.97  E-value=3.4e-32  Score=241.98  Aligned_cols=210  Identities=15%  Similarity=0.063  Sum_probs=141.8

Q ss_pred             eEEeecCCCCCCcchhHHHHHhhhcccc-Ccch------h--hhcccc---CCccccccccccCCCCceEEEeeeecCCC
Q 024481           13 RLLATRSCPTSAVLLPEATLLVEFLLPM-NLHL------I--VTFLFT---RKWLWLERYMLLPQFPSKLFFFCEVEPVS   80 (267)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~--~~~~~t---~~~lwHtD~~y~~~~P~~~~l~c~~~p~~   80 (267)
                      -++-++|.|.+...+.+++.++|.+... ..+.      +  .++...   ....||+|++|.+.||.+++|+|+++|++
T Consensus        43 Gvv~frg~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~wHtD~sy~~~pp~~~~L~c~~~p~~  122 (283)
T 1otj_A           43 QVVFLRDQAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDVTFIETPPAGAILAAKELPST  122 (283)
T ss_dssp             SEEEECSCCCCHHHHHHHHHTTSCBCCCSSSCEETTEEEEEEEEEBTTBCCCCCSCBCTTTTSSSCEEEEEEEEEECCSS
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCCcCCCCCCCCCCCeEEEEeCCCCCCCcCCCcEeeccCccCCCceEEEEEEecCCC
Confidence            3567899998888888999999998753 2221      1  111111   12369999999999999999999999999


Q ss_pred             CCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccC
Q 024481           81 GGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMED  160 (267)
Q Consensus        81 GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~d  160 (267)
                      ||+|.|||+++||+.|+   ++.++.|+.+...|...+.          ..|+..++.+.  ..+......        +
T Consensus       123 GG~T~~~d~~~ay~~L~---~~~~~~~~~l~~~~~~~~~----------~~~~~~~g~~~--~~~~~~~~~--------~  179 (283)
T 1otj_A          123 GGDTLWTSGIAAYEALS---VPFRQLLSGLRAEHDFRKS----------FPEYKYRKTEE--EHQRWREAV--------A  179 (283)
T ss_dssp             CCCEEEEEHHHHHHTSC---HHHHHHHTTCEEEECHHHH----------SCGGGSCSSHH--HHHHHHHHH--------H
T ss_pred             CCcceeeeHHHHHHhCC---HHHHHHHhCcEEEEcchhh----------cchhhcccCcc--ccccccccc--------c
Confidence            99999999999999999   6677777765555532111          11222222210  111111100        0


Q ss_pred             CceEEEEeeeCeeEecCCCCceEE-eeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEEeeccC
Q 024481          161 GGVKTVLGPIPAVTYDKIRQRKIW-FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQN  237 (267)
Q Consensus       161 g~~~~~~~~~P~v~~hP~TG~~~l-fn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq~  237 (267)
                      ..   ....||+|++||.||++++ ||.....++.+              ...+.++++++.|.+.+  ++++++|+|++
T Consensus       180 ~~---~~~~~Pvv~~hp~tG~~~l~~n~~~~~~i~g--------------~~~~e~~~ll~~l~~~~~~~~~~~~~~w~~  242 (283)
T 1otj_A          180 KN---PPLLHPVVRTHPVSGKQALFVNEGFTTRIVD--------------VSEKESEALLSFLFAHITKPEFQVRWRWQP  242 (283)
T ss_dssp             HC---CCEEEESEEECTTTCCEEECCCTTTEEEESS--------------SCHHHHHHHHHHHHHHTTCGGGEEEECCCT
T ss_pred             cC---CCccCCeEEeCCCCCcEEEEecccccccCCC--------------CCHHHHHHHHHHHHHHHhCCCcEEEeeEcC
Confidence            00   2347999999999999985 45443333321              11233456667666543  67899999999


Q ss_pred             CCEEEEeCcccccccCCCC-Ccceee
Q 024481          238 GDVLLIDNLAVLHARRSSS-RPRHIL  262 (267)
Q Consensus       238 GDvli~DN~rvlHgR~~f~-g~R~ll  262 (267)
                      ||||||||+++||||++|. +.+|+|
T Consensus       243 GDv~i~DN~~~lH~r~~f~~~~~R~l  268 (283)
T 1otj_A          243 NDIAIWDNRVTQHYANADYLPQRRIM  268 (283)
T ss_dssp             TCEEEEETTSEEEEECCCCTTSCEEE
T ss_pred             CCEEEEECcceeecccCCCCCCceEE
Confidence            9999999999999999995 334444

>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A

Probab=99.97  E-value=6.7e-31  Score=243.67  Aligned_cols=196  Identities=19%  Similarity=0.232  Sum_probs=147.0

Q ss_pred             EEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCc-cccccccccCCCCceEEEeeeecCCCCCC
Q 024481           14 LLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKW-LWLERYMLLPQFPSKLFFFCEVEPVSGGD   83 (267)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~-lwHtD~~y~~~~P~~~~l~c~~~p~~GGe   83 (267)
                      ++-++|.|.+...+..++.++|++++++++.+         .+.+||+.. .||+|++|.+.||++++|+|+++|++||+
T Consensus       150 vv~frg~~~~~~~~~~~a~~~G~l~~~~~g~~~~v~~~~~~~~~~yt~~~l~~HtD~sy~~~pp~~~~L~c~~~~~~GG~  229 (388)
T 3o2g_A          150 IVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGD  229 (388)
T ss_dssp             EEEEECCCSSTTHHHHHHHHHSCCCCBTTBSSEEESCCTTCSSGGGSSSCEEEECSCTTSSSCCSEEEEEEEECCSSSCC
T ss_pred             EEEEeCCCCCHHHHHHHHHHhCCCccccCCCceEEeecCCcCcccCccCCcccccCCCccCCCCcEEEEEEEecCCCCCc
Confidence            67789999999999999999999998877654         234677654 48999999999999999999999999999


Q ss_pred             CcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCce
Q 024481           84 TPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGV  163 (267)
Q Consensus        84 T~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~  163 (267)
                      |.|+|+++||+.|+++.|+.++.|.+..+.|......                                       +. .
T Consensus       230 T~~~d~~~a~~~L~~~~p~~~~~L~~~~~~~~~~~~~---------------------------------------~~-~  269 (388)
T 3o2g_A          230 SEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVD---------------------------------------YC-D  269 (388)
T ss_dssp             EEEEEHHHHHHHHHHHCHHHHHHHTTCEEEEEEEEES---------------------------------------SS-E
T ss_pred             CeeecHHHHHHHhhhhCHHHHHHHhcCCcccEEecCC---------------------------------------CC-C
Confidence            9999999999999999999999999876665422100                                       00 0


Q ss_pred             EEEEeeeCeeEecCCCCc-eEE-eeccchhccccccCCCCCCcccccCCCCCCcH---HHHHHHHHHhh--ccEEEeecc
Q 024481          164 KTVLGPIPAVTYDKIRQR-KIW-FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPE---DIVYNLMKILE--EECVAIPWQ  236 (267)
Q Consensus       164 ~~~~~~~P~v~~hP~TG~-~~l-fn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~---~~l~~l~~~~~--~~~~~~~Wq  236 (267)
                      ......||+|++||. |+ +.+ ||......+              .+-..+...   ++|+.|.+.+.  +++++|+|+
T Consensus       270 ~~~~~~~Pvv~~hp~-g~~~~l~~~~~~~~~i--------------~~l~~~~~~~~~~al~~l~~~~~~p~~~~~~~~~  334 (388)
T 3o2g_A          270 FSVQSKHKIIELDDK-GQVVRINFNNATRDTI--------------FDVPVERVQPFYAALKEFVDLMNSKESKFTFKMN  334 (388)
T ss_dssp             EEEEEEEESEEECTT-SCEEEECCCTTTBCSC--------------CCSCHHHHHHHHHHHHHHHHHHHSTTTCEEECCC
T ss_pred             cceeeccCEEEEcCC-CCEEEEEeCccccccc--------------CCCCHHHHHHHHHHHHHHHHHhcChhhEEEEEcC
Confidence            113458999999996 66 333 343211111              110001111   45666666554  789999999


Q ss_pred             CCCEEEEeCcccccccCCCC---C-cceeeec
Q 024481          237 NGDVLLIDNLAVLHARRSSS---R-PRHILAS  264 (267)
Q Consensus       237 ~GDvli~DN~rvlHgR~~f~---g-~R~ll~~  264 (267)
                      |||||||||+++||||++|+   | .|++..+
T Consensus       335 pGd~vi~DNr~~lH~R~~f~~~~~~~R~L~r~  366 (388)
T 3o2g_A          335 PGDVITFDNWRLLHGRRSYEAGTEISRHLEGA  366 (388)
T ss_dssp             TTCEEEEETTTEEEEECCCCCCSSCSCEEEEE
T ss_pred             CCcEEEEeCcEEeeCCCCcCCCCCCCEEEEEE
Confidence            99999999999999999997   4 5666554

>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A*

Probab=99.97  E-value=5e-31  Score=234.23  Aligned_cols=208  Identities=16%  Similarity=0.137  Sum_probs=139.6

Q ss_pred             EEeecCCCCCCcchhHHHHHhhhccccCcc-------hh--hhccc---cCCccccccccccCCCCceEEEeeeecCCCC
Q 024481           14 LLATRSCPTSAVLLPEATLLVEFLLPMNLH-------LI--VTFLF---TRKWLWLERYMLLPQFPSKLFFFCEVEPVSG   81 (267)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~---t~~~lwHtD~~y~~~~P~~~~l~c~~~p~~G   81 (267)
                      ++-++|.+.+.....+++.++|.+......       .+  .++..   .....||+|++|.+.||.+++|+|+++|+.|
T Consensus        42 vv~fR~q~l~~~~~~~fa~~fG~l~~~p~~~~~~~~~~i~~i~~~~~~~~~~~~wH~D~sy~~~pp~~~~l~~~~~p~~G  121 (277)
T 3pvj_A           42 VLFLRDQPINPEQQARFAARFGDLHIHPIYPNVPDTPQVLVLDTAVTDVRDNAVWHTDVTFLPTPALGAVLSAKQLPAYG  121 (277)
T ss_dssp             EEEESSCCCCHHHHHHHHGGGSCEECCSSSCEETTEEEEEEEETTTSCCGGGSSCBCTTTTSSSCCCEEEEEEEECCSSC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcccCccCCCCCCCeEEEEecCCCCCCcCCCceeeCCCcCCCCceEEEEeeccCCCC
Confidence            566889988888888999999998743211       11  11111   1234699999999999999999999999999


Q ss_pred             CCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccc-cccccCHHHHHHHHHhcCCceEEccC
Q 024481           82 GDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKS-IFLTEDKSLAEERAANLGLKLEWMED  160 (267)
Q Consensus        82 GeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~-~f~~~d~~~~e~~~~~~g~~~~w~~d  160 (267)
                      |+|.|||+++||+.|+   +++++.|+.+  ...+....          .+.. .+. ...+..+.......      ..
T Consensus       122 G~T~~~d~~~ay~~L~---~~~~~~~~~l--~a~h~~~~----------~~~~~~~~-~~~~~~~~~~~~~~------~~  179 (277)
T 3pvj_A          122 GDTLWASGIAAFEALS---APLREMLDGL--TATHDFTK----------SFPLERFG-TTPQDLARWEATRR------NN  179 (277)
T ss_dssp             CCEEEEEHHHHHHHSC---HHHHHHHTTC--EEEECGGG----------TSCGGGTC-SSHHHHHHHHHHHH------HS
T ss_pred             CCcEeeeHHHHHHhCC---HHHHHHHhcc--EEEeCcHH----------Hhhhhhcc-CCchhccchhhhhc------cC
Confidence            9999999999999999   6788888854  33322211          0000 001 11111110000000      00


Q ss_pred             CceEEEEeeeCeeEecCCCCceEEeec-cchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEEeeccC
Q 024481          161 GGVKTVLGPIPAVTYDKIRQRKIWFNS-IVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQN  237 (267)
Q Consensus       161 g~~~~~~~~~P~v~~hP~TG~~~lfn~-~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq~  237 (267)
                           ....||+|++||+||++++|.+ .....+.              |-..+.++++|+.|.+.+  ++++|+|+|++
T Consensus       180 -----~~~~hPvVr~hP~TG~k~L~vn~~~~~~i~--------------gl~~~es~~ll~~L~~~~~~pe~~~r~~W~~  240 (277)
T 3pvj_A          180 -----PPLSHPVVRTHPVSGRKALFVNEGFTTRIN--------------ELSELESDALLRLLFAHATRPEFSIRWRWQE  240 (277)
T ss_dssp             -----CCEEEESEEECTTTCCEEECCCTTTEEEET--------------TSCHHHHHHHHHHHHHHHTSGGGEEEECCCT
T ss_pred             -----CCCcCCeEEecCCCCCEEEEeccccceeec--------------CCCHHHHHHHHHHHHHHHhCCCcEEEEeeCC
Confidence                 1247999999999999987744 3333432              222244566777776643  67999999999


Q ss_pred             CCEEEEeCcccccccCCCCC-cceee
Q 024481          238 GDVLLIDNLAVLHARRSSSR-PRHIL  262 (267)
Q Consensus       238 GDvli~DN~rvlHgR~~f~g-~R~ll  262 (267)
                      |||+||||+++||+|.++.+ .+|++
T Consensus       241 GDlviwDNr~~lH~a~~d~~~~~R~~  266 (277)
T 3pvj_A          241 NDVAFWDNRVTQHFAVDDYRPNRRVM  266 (277)
T ss_dssp             TCEEEEETTSEEEEECCCCTTSCCEE
T ss_pred             CCEEEEeCCceeeeccCCCCCCccEE
Confidence            99999999999999998643 34444

>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha-ketoglutarat dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A*

Probab=99.93  E-value=3.6e-26  Score=209.70  Aligned_cols=141  Identities=12%  Similarity=0.151  Sum_probs=105.4

Q ss_pred             ccccccccccCCCCceEEEeeeecCCCCCCCcceeHH-HHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCc
Q 024481           54 WLWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSH-IVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGW  132 (267)
Q Consensus        54 ~lwHtD~~y~~~~P~~~~l~c~~~p~~GGeT~~aD~~-~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w  132 (267)
                      ..||+|.+|.+.||++++|+|+++|.+||+|+|+|+. ++|+.|+   |++++.|++..  |.....             
T Consensus       176 l~~HtD~sy~~~pP~~~~L~cl~~~~~GG~t~~~~~~~~al~~l~---p~~~~~L~~~~--~~~~~~-------------  237 (357)
T 2og5_A          176 LTFHNENAFHEHRPDFVMLLCLRADPTGRAGLRTACVRRVLPLLS---DSTVDALWAPE--FRTAPP-------------  237 (357)
T ss_dssp             EEEECTTTTCTTCCSEEEEEEEECCTTSCCCEEEEEHHHHGGGSC---HHHHHHHTSSC--EECCCC-------------
T ss_pred             ccccccCCCCCCCCCeEEEEEEccCCCCCccEEEeeHHHHHHhCC---HHHHHHHcCCC--eEecCC-------------
Confidence            3489999999999999999999999999999999975 5666665   99999999644  321110             


Q ss_pred             cccccccCHHHHHHHHHhcCCceEEccCCceEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCC
Q 024481          133 KSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGS  212 (267)
Q Consensus       133 ~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~  212 (267)
                       ..|+...                  .      ....||+|+.||. |+.++||.....                  ..+
T Consensus       238 -~~~~~~~------------------~------~~~~~pvv~~~~~-g~~l~~~~~~~~------------------~~~  273 (357)
T 2og5_A          238 -PSFQLSG------------------P------EEAPAPVLLGDRS-DPDLRVDLAATE------------------PVT  273 (357)
T ss_dssp             -GGGC------------------------------CCBCSEEECSS-SEEECCBTTTCE------------------ESS
T ss_pred             -ccccccc------------------C------CCCcceEEEeCCC-CCeEEEchhhcC------------------CCC
Confidence             1111000                  0      1136899999998 855566642110                  123


Q ss_pred             CCcHHHHHHHHHHhhccEEEeeccCCCEEEEeCcccccccCCCC
Q 024481          213 PYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSS  256 (267)
Q Consensus       213 ~~~~~~l~~l~~~~~~~~~~~~Wq~GDvli~DN~rvlHgR~~f~  256 (267)
                      +.+.++|+.|.+.+.+.+++|+|++||||||||+++||||++|+
T Consensus       274 ~e~~~aL~~l~~~~~~~~~~~~w~pGDivi~DN~~vlH~R~~f~  317 (357)
T 2og5_A          274 ERAAEALRELQAHFDATAVTHRLLPGELAIVDNRVTVHGRTEFT  317 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEECCCTTCEEEEETTTEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHhhceEEEeeCCCCEEEEeCCccccCCCCCC
Confidence            46678889998888777999999999999999999999999995

>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme, oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces clavuligerus} SCOP: b.82.2.2 PDB: 1drt_A* 1ds0_A 1dry_A* 1gvg_A*

Probab=99.92  E-value=2.6e-25  Score=201.36  Aligned_cols=156  Identities=14%  Similarity=0.094  Sum_probs=112.0

Q ss_pred             cccCCc-cccccccccCCCCceEEEeeeecCCC-CCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCC
Q 024481           49 LFTRKW-LWLERYMLLPQFPSKLFFFCEVEPVS-GGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTS  126 (267)
Q Consensus        49 ~~t~~~-lwHtD~~y~~~~P~~~~l~c~~~p~~-GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~  126 (267)
                      +||+.. .||+|.+|.+.||++++|+|+++|.+ ||+|.|+|+++||+.|+   |++++.|.+.  .+...+        
T Consensus       135 ~~t~~~l~~HtD~sy~~~pP~~~~L~c~~~~~~GGg~T~~~~~~~a~~~L~---~~~~~~l~~~--~~~~~~--------  201 (324)
T 1ds1_A          135 ETSETLLEFHTEMAYHRLQPNYVMLACSRADHERTAATLVASVRKALPLLD---ERTRARLLDR--RMPCCV--------  201 (324)
T ss_dssp             TCCSSCEEEECTTTTBTTCCSEEEEEEEECCTTCCCCEEEEEHHHHGGGSC---HHHHHHHBTC--CEEECC--------
T ss_pred             ccccCcccccccCCCCCCCCCeEEEEEeecCccCCceEEEeeHHHHHHhCC---HHHHHHHhcc--CccccC--------
Confidence            455544 48999999999999999999999998 89999999999999998   7788888743  222111        


Q ss_pred             CCCCCccccccccCHHHHHHHHHhcCCceEEccCCceEEEEeeeCeeEecCCCCceEE-eeccchhccccccCCCCCCcc
Q 024481          127 PTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW-FNSIVMAYTCWKDTQNDPVKA  205 (267)
Q Consensus       127 ~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~~~~~~~~P~v~~hP~TG~~~l-fn~~~~~~~~~~~~~~~~~~~  205 (267)
                            ...|...                     . .. ....||+|+.+...+.+.+ ||...   .            
T Consensus       202 ------~~~~~~~---------------------~-~~-~~~~hPvv~~~g~~~~~~~~~~~~~---~------------  237 (324)
T 1ds1_A          202 ------DVAFRGG---------------------V-DD-PGAIAQVKPLYGDADDPFLGYDREL---L------------  237 (324)
T ss_dssp             ------CGGGCCC---------------------C-CS-GGGSEEECSEESCTTSCEECCBTTT---B------------
T ss_pred             ------ChhhccC---------------------C-cC-ccccCCeEEEeCCCCCceEEECCcc---C------------
Confidence                  1111100                     0 00 1236788776666554443 33210   0            


Q ss_pred             cccCCCCCCcHHHHHHHHHHhhccEEEeeccCCCEEEEeCcccccccCCCCC-----cceeeec
Q 024481          206 VTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSSR-----PRHILAS  264 (267)
Q Consensus       206 ~~~gdg~~~~~~~l~~l~~~~~~~~~~~~Wq~GDvli~DN~rvlHgR~~f~g-----~R~ll~~  264 (267)
                         ...++.+.++|+.|.+++.+++++|+|++||||||||+++||||++|++     .|++..+
T Consensus       238 ---~~~~~~~~~al~~l~~~~~~~~~~~~w~~GDv~i~DN~~~lH~R~~f~~~~~~~~R~L~R~  298 (324)
T 1ds1_A          238 ---APEDPADKEAVAALSKALDEVTEAVYLEPGDLLIVDNFRTTHARTPFSPRWDGKDRWLHRV  298 (324)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHHTCEEECCCTTCEEEEETTTEEEEECCCCCCCSSCCCEEEEE
T ss_pred             ---CCCCHHHHHHHHHHHHHHHhccEEEeeCCCCEEEEeCCceeecCCccCCCCCCCCcEEEEE
Confidence               0123567889999998888999999999999999999999999999976     4655543

>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A*

Probab=99.90  E-value=1.5e-24  Score=198.84  Aligned_cols=158  Identities=15%  Similarity=0.120  Sum_probs=105.8

Q ss_pred             ccccccccccCCCCceEEEeeeecCCCCCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCcc
Q 024481           54 WLWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWK  133 (267)
Q Consensus        54 ~lwHtD~~y~~~~P~~~~l~c~~~p~~GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~  133 (267)
                      ..||||.+|.+.||++++|+|+++|+ ||+|.|||++.+  .|+   |++++.|++..  |...... .      ...|.
T Consensus       165 l~~HtD~sy~~~pp~~~~L~cl~~p~-gG~T~~ad~~~~--~l~---p~~~~~L~~~~--~~~~~~~-~------~~~~~  229 (358)
T 2wbq_A          165 LGWHTEDAFSPYRADYVGLLSLRNPD-GVATTLAGVPLD--DLD---ERTLDVLFQER--FLIRPDD-S------HLQVN  229 (358)
T ss_dssp             EEEECTTTTCTTCCSEEEEEEEECTT-CCEEEEEECCTT--TCC---HHHHHHHTSSC--EECCCCG-G------GSGGG
T ss_pred             ccccccCCCCCCCCCeEEEEeEecCC-CCCceEEechhh--hCC---HHHHHHHhCCC--eEEcCCc-c------ccccc
Confidence            35899999999999999999999999 999999998754  454   99999999654  3211111 0      00111


Q ss_pred             ccccccCHHHHHHHHHhcCCceEEccCCceEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCC
Q 024481          134 SIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSP  213 (267)
Q Consensus       134 ~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~  213 (267)
                      ..++..+..+.+..       .+|.+++      ..||+++.||  |++.++.+.....+               .+.++
T Consensus       230 ~~~~~~~~~~~~~~-------~~~~~~~------~~hpvv~~~~--~~~~l~~~~~~~~~---------------~~~~~  279 (358)
T 2wbq_A          230 NSTAQQGRVEFEGI-------AQAADRP------EPVAILTGHR--AAPHLRVDGDFSAP---------------AEGDE  279 (358)
T ss_dssp             CC-----CTHHHHH-------HHHHHSC------CCBCSEEEET--TEEEECCBTTTCEE---------------STTCH
T ss_pred             ccccccchhhhhhh-------hhhccCC------CcceeeeCCC--CCCcEEECcccccc---------------CCCCH
Confidence            11111111111100       0122222      2689999988  77765422111111               12236


Q ss_pred             CcHHHHHHHHHHhhccEEEeeccCCCEEEEeCcccccccCCCC
Q 024481          214 YPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSS  256 (267)
Q Consensus       214 ~~~~~l~~l~~~~~~~~~~~~Wq~GDvli~DN~rvlHgR~~f~  256 (267)
                      .+.++|+.|.+.+.+++++|+|++||||||||+++||||.+|+
T Consensus       280 e~~~aL~~l~~~~~~~~~~~~w~pGDv~i~DNr~vlH~R~~f~  322 (358)
T 2wbq_A          280 EAAAALGTLRKLIDASLYELVLDQGDVAFIDNRRAVHGRRAFQ  322 (358)
T ss_dssp             HHHHHHHHHHHHHHHHCEEEECCTTCEEEEETTTEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHhhceEEeecCCCEEEEeCcccccCCCCCC
Confidence            6788999999888889999999999999999999999999995

>1jr7_A GABT protein, hypothetical 37.4 kDa protein in ILEY-GABD interg region; gamma amino-butyric acid metabolism, GABA; 2.00A {Escherichia coli} SCOP: b.82.2.3 PDB: 2r6s_A*

Probab=99.90  E-value=7.6e-24  Score=188.66  Aligned_cols=177  Identities=15%  Similarity=0.141  Sum_probs=127.8

Q ss_pred             EEeecCCC----CCCcchhHHHHHhhhc-cccC----cchh------------hhc---cccCCccccccccccCCCCce
Q 024481           14 LLATRSCP----TSAVLLPEATLLVEFL-LPMN----LHLI------------VTF---LFTRKWLWLERYMLLPQFPSK   69 (267)
Q Consensus        14 ~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~----~~~~------------~~~---~~t~~~lwHtD~~y~~~~P~~   69 (267)
                      +.++...|    .+...+..++.++|++ ++++    +|.+            .+.   +|| ..-||||.+|.+.+|++
T Consensus        80 ~~~i~~~~~~~~~~~~~~~~l~~riG~i~r~t~~D~~yG~~~a~f~V~~~~~~~~~l~~AYT-~L~lHTDg~Y~~~~pg~  158 (311)
T 1jr7_A           80 ALLINAVGVDDVKQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHR-VMELHNDGTYVEEITDY  158 (311)
T ss_dssp             EEEEEETTCCSGGGHHHHHHHHHHHHHHHEEECCBTTTTBSSEEEEECCC-----CTTCTTC-CEEEECSCTTSSSCCCE
T ss_pred             EEEEEccCCCCCCCHHHHHHHHHHheeccccCCcccCCCceEeeEEEEecCCccccchhhcc-CCCcccCCCCCCCCccH
Confidence            44555555    4777788899999999 9998    5533            235   788 44569999999999999


Q ss_pred             EEEe-eeecCCCCCCCcceeHHHHHHHhhhhChHHHHH-----HHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHH
Q 024481           70 LFFF-CEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQ-----LEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSL  143 (267)
Q Consensus        70 ~~l~-c~~~p~~GGeT~~aD~~~~y~~L~~~~Pel~~~-----L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~  143 (267)
                      ++|| |++++.+||+|.|         |++++||.++.     |++..|.|..  +.+.                     
T Consensus       159 qlLH~Cl~~~~~GGeS~l---------Lr~~dPe~f~~~~~~~L~~~~v~~~~--~~~~---------------------  206 (311)
T 1jr7_A          159 VLMMKIDEQNMQGGNSLL---------LHLDDWEHLDNYFRHPLARRPMRFAA--PPSK---------------------  206 (311)
T ss_dssp             EEEEEEEEESCCBCCEEE---------EEGGGCTTHHHHHTSGGGGSCEEECC--SSCT---------------------
T ss_pred             HHHHHHHhccCCCceeee---------chhhCHHHHhcccccCceeceEEeec--cCCC---------------------
Confidence            9999 9999999999999         99999999999     9987777741  1100                     


Q ss_pred             HHHHHHhcCCceEEccCCceEEEEeeeCeeEecCCCCceEE-eeccchhccccccCCCCCCcccccCCCCCCcHHHHHHH
Q 024481          144 AEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW-FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNL  222 (267)
Q Consensus       144 ~e~~~~~~g~~~~w~~dg~~~~~~~~~P~v~~hP~TG~~~l-fn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l  222 (267)
                                       + .. ....+|+|..++. |+..+ ||....                  ..-..+....+..+
T Consensus       207 -----------------~-~~-~~~~~PVi~ld~~-G~l~IRyn~~~r------------------~p~~~~~~~Yl~~f  248 (311)
T 1jr7_A          207 -----------------N-VS-KDVFHPVFDVDQQ-GRPVMRYIDQFV------------------QPKDFEEGVWLSEL  248 (311)
T ss_dssp             -----------------T-CC-CCEEECSEEECTT-SCEEECCCTTTE------------------ECCSHHHHHHHHHH
T ss_pred             -----------------c-ee-eEeecCEEEECCC-CCEEEEeCCCCC------------------CCHHHHHHHHHHHH
Confidence                             0 00 2336799999886 87642 332100                  00011122235555


Q ss_pred             HHHh--hccEEEeeccCCCEEEEeCcccccccCCCC---Cc-cee
Q 024481          223 MKIL--EEECVAIPWQNGDVLLIDNLAVLHARRSSS---RP-RHI  261 (267)
Q Consensus       223 ~~~~--~~~~~~~~Wq~GDvli~DN~rvlHgR~~f~---g~-R~l  261 (267)
                      .+.+  +++++.|+|++||+||+||+|+||||++|+   |. |++
T Consensus       249 ~~~l~dp~~~~~~kL~pGd~vifDN~RvLHGR~aF~~~~g~~R~L  293 (311)
T 1jr7_A          249 SDAIETSKGILSVPVPVGKFLLINNLFWLHGRDRFTPHPDLRREL  293 (311)
T ss_dssp             HHHHHTCTTCEEECCCTTCEEEEETTTEEEEECCBCCCTTCEEEE
T ss_pred             HHHhcCcccEEEEEcCCCcEEEEeCCccccCcCCcCCCCCCceEE
Confidence            5533  568999999999999999999999999996   54 777

>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A

Probab=85.23  E-value=1.1  Score=39.46  Aligned_cols=30  Identities=17%  Similarity=0.268  Sum_probs=26.0

Q ss_pred             HhhccEEEeeccCCCEEEEeCcccccccCCC
Q 024481          225 ILEEECVAIPWQNGDVLLIDNLAVLHARRSS  255 (267)
Q Consensus       225 ~~~~~~~~~~Wq~GDvli~DN~rvlHgR~~f  255 (267)
                      .++.+.+.+.++|||+|++| ..++||..+.
T Consensus       228 ~le~~~~ewd~epGDav~F~-~~tlHga~pl  257 (344)
T 3nnf_A          228 TIKDGYEEDEYNLGDAFFFN-KYVLHQSVPL  257 (344)
T ss_dssp             HHTTCEEECCBCTTCEEEEE-TTCEEEECCB
T ss_pred             hhhhhhccccCCCCcEEEEe-cceeecCCCC
Confidence            46788999999999999996 6799999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1y0za_	327	b.82.2.8 (A:) Clavaminate synthase-like protein At	7e-44
d1ds1a_	323	b.82.2.2 (A:) Clavaminate synthase {Streptomyces c	2e-10
d1nx4a_	271	b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia c	1e-07
d1jr7a_	311	b.82.2.3 (A:) Gab protein (hypothetical protein Yg	0.004

>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 327

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: gamma-Butyrobetaine hydroxylase
domain: Clavaminate synthase-like protein At3g21360
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  149 bits (376), Expect = 7e-44
 Identities = 138/204 (67%), Positives = 170/204 (83%)

Query: 64  PQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDD 123
            +FPSKLFF+CE+EP  GG+TP+VLSH+VYERMK+ +PEFVQ+LE+ GL+Y R+  E DD
Sbjct: 124 REFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDD 183

Query: 124 LTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKI 183
            +SP GRGWKS FLT DK+LAE+RA +LG+KLEW EDGG KTV+GPIPA+ YD+ R RK+
Sbjct: 184 PSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKV 243

Query: 184 WFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLI 243
           WFNS+V AYT W+D +NDP KAVTFG+G P P DIV++ ++ILEEECVA+PWQ GDVLLI
Sbjct: 244 WFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLI 303

Query: 244 DNLAVLHARRSSSRPRHILASLCK 267
           DN AVLH+RR    PR +LASLCK
Sbjct: 304 DNWAVLHSRRPFDPPRRVLASLCK 327

>d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 323

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Clavaminate synthase
domain: Clavaminate synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 57.8 bits (139), Expect = 2e-10
 Identities = 23/204 (11%), Positives = 46/204 (22%), Gaps = 63/204 (30%)

Query: 64  PQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDD 123
              P+ +   C           LV S      + +       +L    +           
Sbjct: 150 RLQPNYVMLACSRADHERTAATLVASVRKALPLLD--ERTRARLLDRRMPCCVDV----- 202

Query: 124 LTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKI 183
                                            +         +  +  +  D      +
Sbjct: 203 --------------------------------AFRGGVDDPGAIAQVKPLYGDADDPF-L 229

Query: 184 WFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLI 243
            ++                          P  ++ V  L K L+E   A+  + GD+L++
Sbjct: 230 GYDR------------------ELLAPEDPADKEAVAALSKALDEVTEAVYLEPGDLLIV 271

Query: 244 DNLAVLHARRS-----SSRPRHIL 262
           DN    HAR         + R + 
Sbjct: 272 DNFRTTHARTPFSPRWDGKDRWLH 295

>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora [TaxId: 554]} Length = 271

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: gamma-Butyrobetaine hydroxylase
domain: Carbapenem synthase, CarC
species: Erwinia carotovora [TaxId: 554]

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 21/204 (10%), Positives = 52/204 (25%), Gaps = 50/204 (24%)

Query: 63  LPQFPSKLFFFCEVEPVS--GGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQE 120
           L     ++F +          G T +    +  + M       +     +   +     E
Sbjct: 106 LLSQVDQVFLYAAEIKNVKFRGATTVCDHALACQEMPAHLLRVL-----EEETFEVRVLE 160

Query: 121 KDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQ 180
           +      +  GW  + +  D     +                          + +     
Sbjct: 161 RGYYVDVSPDGWFKVPVFTDLGWVRK------------------------MLIYFPFDEG 196

Query: 181 RKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDV 240
           +   +   ++    + D +                   +   +K          W++GD+
Sbjct: 197 QPASWEPRIVG---FTDHETQAFF------------QELGAFLKQ-PRYYYKHFWEDGDL 240

Query: 241 LLIDNLAVLHARRS---SSRPRHI 261
           L++DN  V+H R         R +
Sbjct: 241 LIMDNRRVIHEREEFNDDDIVRRL 264

>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT) {Escherichia coli [TaxId: 562]} Length = 311

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Gab protein (hypothetical protein YgaT)
domain: Gab protein (hypothetical protein YgaT)
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 208 FGNGSPYPEDIVYN-LMKILEEE--CVAIPWQNGDVLLIDNLAVLHARRS----SSRPRH 260
           F     + E +  + L   +E     +++P   G  LLI+NL  LH R          R 
Sbjct: 233 FVQPKDFEEGVWLSELSDAIETSKGILSVPVPVGKFLLINNLFWLHGRDRFTPHPDLRRE 292

Query: 261 IL 262
           ++
Sbjct: 293 LM 294

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1y0za_	327	Clavaminate synthase-like protein At3g21360 {Thale	100.0
d1oiha_	288	Putative alkylsulfatase AtsK {Pseudomonas putida [	99.97
d1otja_	281	Taurine/alpha-ketoglutarate dioxygenase TauD {Esch	99.97
d1nx4a_	271	Carbapenem synthase, CarC {Erwinia carotovora [Tax	99.95
d1ds1a_	323	Clavaminate synthase {Streptomyces clavuligerus [T	99.88
d1jr7a_	311	Gab protein (hypothetical protein YgaT) {Escherich	99.77

>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: gamma-Butyrobetaine hydroxylase
domain: Clavaminate synthase-like protein At3g21360
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-52  Score=378.79  Aligned_cols=254  Identities=57%  Similarity=0.997  Sum_probs=227.5

Q ss_pred             EEeecCCCC-CCcchhHHHHHhhhccccC------cchhhhccccCC-------ccccccccccCCCCceEEEeeeecCC
Q 024481           14 LLATRSCPT-SAVLLPEATLLVEFLLPMN------LHLIVTFLFTRK-------WLWLERYMLLPQFPSKLFFFCEVEPV   79 (267)
Q Consensus        14 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~t~~-------~lwHtD~~y~~~~P~~~~l~c~~~p~   79 (267)
                      ++-+||.|. ++..+..++.++|+..-.+      +..+..+++++.       ..||+|++|.+.||.+++|+|+++|+
T Consensus        60 vvlfRg~~l~~~~~f~~f~~~fG~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~HtD~sy~~~pP~~~~l~c~~~p~  139 (327)
T d1y0za_          60 AVLFRGFPVNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVREFPSKLFFYCEIEPK  139 (327)
T ss_dssp             EEEECSSCCCSHHHHHHHHHHHCCCBCCCCSSSCCEEEEETTEEEECCSCTTSCEEEECTTTTSSSCCSEEEEEEEECCS
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCcccCccCCCCCccccCCceecCCCCCCccceecccCCccccCCCceEEEEeeecCC
Confidence            567899995 5667788999998754332      333466677642       24899999999999999999999999


Q ss_pred             CCCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEcc
Q 024481           80 SGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWME  159 (267)
Q Consensus        80 ~GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~  159 (267)
                      +||+|.|||+++||+.|+++.|+++++|+++++.|.++++...++....+.+|++.|+++++.+++.+++..++.++|.+
T Consensus       140 ~GGeT~f~d~~~ay~~L~~~~~~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~~~f~t~~~~~~~~~~~~~~~~~~~~~  219 (327)
T d1y0za_         140 CGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTE  219 (327)
T ss_dssp             EECCCCEEEHHHHHHHHHHHCHHHHHHHHHHCEEEEEEECSSBCTTSTTCCCHHHHTTCSCHHHHHHHHHHTTCEEEECT
T ss_pred             CCCCCEEEeHHHHHHhcChhchhhhhhceecceeeEeecccccccccccccchhhhcccccHHHHHHHhhhccccccccc
Confidence            99999999999999999999999999999999999999988777777788999999999999999999999999999999


Q ss_pred             CCceEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHhhccEEEeeccCCC
Q 024481          160 DGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGD  239 (267)
Q Consensus       160 dg~~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~~~~~~~Wq~GD  239 (267)
                      |+.+......||+|++||.||+++|||+....+..+.......+..++||||++|+++++++|.+++++++|+|+||+||
T Consensus       220 d~~~~~~~~~~p~v~~hP~tg~k~~f~~~~~~~~~~~~~~~~~~~~~~fgDG~~i~~~ll~~i~~~~~~~~~~~~Wq~GD  299 (327)
T d1y0za_         220 DGGAKTVMGPIPAIKYDESRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGD  299 (327)
T ss_dssp             TSCEEEEEEEECSCEEETTTTEEECCSCHHHHHHHCCBTTBCGGGTEEETTSCCCCHHHHHHHHHHHHHHCBCCCCCTTC
T ss_pred             cccccceeeccccEEeCCCCccceeeccceeEEeecccccccchhhccccCCccchHHHHHHHHHhCcceEEEeecCCCC
Confidence            99877667789999999999999999998888777766666667789999999999999999999999999999999999


Q ss_pred             EEEEeCcccccccCCCCCcceeeecccC
Q 024481          240 VLLIDNLAVLHARRSSSRPRHILASLCK  267 (267)
Q Consensus       240 vli~DN~rvlHgR~~f~g~R~ll~~~~~  267 (267)
                      ||||||+++||||++|+|+|+|+++|+|
T Consensus       300 lvi~DN~~~lHgR~~f~g~Rrv~~~l~~  327 (327)
T d1y0za_         300 VLLIDNWAVLHSRRPFDPPRRVLASLCK  327 (327)
T ss_dssp             EEEEETTTEEEEECCEESCCEEEEEEEC
T ss_pred             EEEEecchhhhCCCCCCCCceEEEEecC
Confidence            9999999999999999999999999987

>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TauD/TfdA-like
domain: Putative alkylsulfatase AtsK
species: Pseudomonas putida [TaxId: 303]

Probab=99.97  E-value=4.1e-32  Score=239.70  Aligned_cols=211  Identities=17%  Similarity=0.127  Sum_probs=139.9

Q ss_pred             EEeecC-CCCCCcchhHHHHHhhhccccCcchhh---------hccccC-CccccccccccCCCCceEEEeeeecCCCCC
Q 024481           14 LLATRS-CPTSAVLLPEATLLVEFLLPMNLHLIV---------TFLFTR-KWLWLERYMLLPQFPSKLFFFCEVEPVSGG   82 (267)
Q Consensus        14 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~t~-~~lwHtD~~y~~~~P~~~~l~c~~~p~~GG   82 (267)
                      ++-+++ ...++..+..++.++|.+....+....         ++..+. +..||+|.+|.+.||.+++|||+++|+.||
T Consensus        42 vlvfr~Q~~l~~e~~~~fa~~fG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~WHtD~s~~~~pp~~t~L~~~~~p~~GG  121 (288)
T d1oiha_          42 VIFFRGQTHLDDQSQEGFAKLLGEPVAHPTVPVVDGTRYLLQLDGAQGQRANSWHTDVTFVEAYPKASILRSVVAPASGG  121 (288)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBCC----CCCTTCSSCEEEC-----CCCSCBCTTTTSSSCCSEEEEEEEECCSSCC
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCcccccccccccccccccccccccccccccccccccccccccccceeEEEEeccCccC
Confidence            456777 467777788899999888776554431         111222 446999999999999999999999999999


Q ss_pred             CCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCc
Q 024481           83 DTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGG  162 (267)
Q Consensus        83 eT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~  162 (267)
                      +|.|||+.+||+.|+   ++++++|++..+.+...+...            ......+....+....    .    ....
T Consensus       122 ~T~f~d~~~aye~L~---~~~k~~l~~l~~~hs~~~~~~------------~~~~~~~~~~~~~~~~----~----~~~~  178 (288)
T d1oiha_         122 DTVWANTAAAYQELP---EPLRELADKLWAVHSNEYDYA------------SLKPDIDPAKLERHRK----V----FTST  178 (288)
T ss_dssp             CEEEEEHHHHHHTSC---HHHHHHHHHCEEEEECC---------------------------------------------
T ss_pred             ccccccchhhhhhcc---ccccceeecceEEecchhhhh------------hhcCCCChhhhhhhcc----c----cccc
Confidence            999999999999999   789999998766554221110            0000001111110000    0    0000


Q ss_pred             eEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHH--hhccEEEeeccCCCE
Q 024481          163 VKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKI--LEEECVAIPWQNGDV  240 (267)
Q Consensus       163 ~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~--~~~~~~~~~Wq~GDv  240 (267)
                      .  ....||+|++||.||++++|++.....+              .|...+.+.++++.|.+.  .++++|+|+|++|||
T Consensus       179 ~--~~~~hplV~~hp~tg~~~ly~~~~~~~i--------------~~~~~~e~~~~l~~L~~~~~~~~~~y~h~W~~GDl  242 (288)
T d1oiha_         179 V--YETEHPVVRVHPISGERALQLGHFVKRI--------------KGYSLADSQHLFAVLQGHVTRLENTVRWRWEAGDV  242 (288)
T ss_dssp             C--CEEEEESEEECTTTCCEEECCSTTEEEE--------------TTSCHHHHHHHHHHHHHHHTSGGGEEEECCCTTCE
T ss_pred             c--ccceeeEEEeeccccceeeecccccccc--------------cccchhhhhhHHHHHHHHhCCcCeEEEEEecCCCE
Confidence            1  2347999999999999998866543333              223334566777777764  367999999999999


Q ss_pred             EEEeCcccccccCCCCC--cceeee
Q 024481          241 LLIDNLAVLHARRSSSR--PRHILA  263 (267)
Q Consensus       241 li~DN~rvlHgR~~f~g--~R~ll~  263 (267)
                      |||||+++||+|++|.+  +|.+..
T Consensus       243 viwDNr~vlH~a~~~~~~~~R~m~R  267 (288)
T d1oiha_         243 AIWDNRATQHYAVDDYGTQPRIVRR  267 (288)
T ss_dssp             EEEETTSEEEEECCCCTTSCCEEEE
T ss_pred             EEEeCCceeEecccCCCCCceEEEE
Confidence            99999999999999855  455443

>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TauD/TfdA-like
domain: Taurine/alpha-ketoglutarate dioxygenase TauD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.7e-31  Score=234.31  Aligned_cols=209  Identities=14%  Similarity=0.067  Sum_probs=143.7

Q ss_pred             EEeecCCCCCCcchhHHHHHhhhccccCcchhh------------hccccCCccccccccccCCCCceEEEeeeecCCCC
Q 024481           14 LLATRSCPTSAVLLPEATLLVEFLLPMNLHLIV------------TFLFTRKWLWLERYMLLPQFPSKLFFFCEVEPVSG   81 (267)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~t~~~lwHtD~~y~~~~P~~~~l~c~~~p~~G   81 (267)
                      ++-++|.+-++..+-+++.++|-+.........            .........||+|.+|.+.||.+++|||+++|..|
T Consensus        43 vlvfr~q~ls~~~~~~f~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wH~D~s~~~~P~~~~~l~~~~~p~~G  122 (281)
T d1otja_          43 VVFLRDQAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDVTFIETPPAGAILAAKELPSTG  122 (281)
T ss_dssp             EEEECSCCCCHHHHHHHHHTTSCBCCCSSSCEETTEEEEEEEEEBTTBCCCCCSCBCTTTTSSSCEEEEEEEEEECCSSC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCccccCcccccccccceeeecccccccccccccccccccccCcceeeEEEEEeeccCC
Confidence            566788888888888999998877555443321            11112345799999999999999999999999999


Q ss_pred             CCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCC
Q 024481           82 GDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDG  161 (267)
Q Consensus        82 GeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg  161 (267)
                      |+|.|||++++|+.|+   ++++++|+...+.+......            ...................      ... 
T Consensus       123 G~T~f~d~~~ay~~L~---~~~k~~~~~l~~~h~~~~~~------------~~~~~~~~~~~~~~~~~~~------~~~-  180 (281)
T d1otja_         123 GDTLWTSGIAAYEALS---VPFRQLLSGLRAEHDFRKSF------------PEYKYRKTEEEHQRWREAV------AKN-  180 (281)
T ss_dssp             CCEEEEEHHHHHHTSC---HHHHHHHTTCEEEECHHHHS------------CGGGSCSSHHHHHHHHHHH------HHC-
T ss_pred             CcceecchHHHHHhhc---hhhhcccceeEEEEchhhhc------------chhcccccchhhhccchhh------hcc-
Confidence            9999999999999999   78999998655544311110            0000011111110000000      001 


Q ss_pred             ceEEEEeeeCeeEecCCCCceEEeeccch-hccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEEeeccCC
Q 024481          162 GVKTVLGPIPAVTYDKIRQRKIWFNSIVM-AYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQNG  238 (267)
Q Consensus       162 ~~~~~~~~~P~v~~hP~TG~~~lfn~~~~-~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq~G  238 (267)
                          ....||+|++||.||++++|.+... ..+              .|.....+.++|+.|.+..  ++++|+|+|++|
T Consensus       181 ----~~~~hPlV~~hp~tg~k~l~~~~~~~~~i--------------~g~~~~e~~~~l~~l~~~~~~~~~~y~h~W~~G  242 (281)
T d1otja_         181 ----PPLLHPVVRTHPVSGKQALFVNEGFTTRI--------------VDVSEKESEALLSFLFAHITKPEFQVRWRWQPN  242 (281)
T ss_dssp             ----CCEEEESEEECTTTCCEEECCCTTTEEEE--------------SSSCHHHHHHHHHHHHHHTTCGGGEEEECCCTT
T ss_pred             ----cceecceEEecCcCCccceecccccceee--------------ccCChhHHHHHHHHHHHHHcCCCEEEEEEEECC
Confidence                1247999999999999998765432 222              2333345667777777643  679999999999


Q ss_pred             CEEEEeCcccccccCCCC-Ccceee
Q 024481          239 DVLLIDNLAVLHARRSSS-RPRHIL  262 (267)
Q Consensus       239 Dvli~DN~rvlHgR~~f~-g~R~ll  262 (267)
                      |||||||+++||+|++|. +.+|+|
T Consensus       243 DlviwDN~~vlH~~~~~~~~~~R~m  267 (281)
T d1otja_         243 DIAIWDNRVTQHYANADYLPQRRIM  267 (281)
T ss_dssp             CEEEEETTSEEEEECCCCTTSCEEE
T ss_pred             CEEEECCCceeECCcCCCCCCceEE
Confidence            999999999999999974 345554

>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora [TaxId: 554]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: gamma-Butyrobetaine hydroxylase
domain: Carbapenem synthase, CarC
species: Erwinia carotovora [TaxId: 554]

Probab=99.95  E-value=7.6e-28  Score=210.09  Aligned_cols=204  Identities=13%  Similarity=0.114  Sum_probs=127.8

Q ss_pred             eEEeecCCCCCCcchhHHHHHhhhccccCcchh----------------hhccccCCc-cccccccccCCCCceEEEeee
Q 024481           13 RLLATRSCPTSAVLLPEATLLVEFLLPMNLHLI----------------VTFLFTRKW-LWLERYMLLPQFPSKLFFFCE   75 (267)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~t~~~-lwHtD~~y~~~~P~~~~l~c~   75 (267)
                      .++-++|.|.+...+..++.++|.+.....+..                ...+++.+. .||+|++|.+.||.+++|||+
T Consensus        39 G~vv~r~~~l~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~HtD~~~~~~pp~~~~L~c~  118 (271)
T d1nx4a_          39 GFVVVKNLDIDSDTFRDIYSAYGTIVEYADEKIGVGFGYRDTLKLEGEKGKIVTGRGQLPFHADGGLLLSQVDQVFLYAA  118 (271)
T ss_dssp             CEEEECSCCCCHHHHHHHHHTTSEECC------------CCSEEECCCTTCSSSSSSCEEEECSSSSSSCCCCEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCccccccccCCCCCCCceEEEccCcccccccCCCCCCcccCCCCCCCCCceEEEEEE
Confidence            466789999999999999999988765322111                112344444 589999999999999999999


Q ss_pred             ecC--CCCCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCC
Q 024481           76 VEP--VSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGL  153 (267)
Q Consensus        76 ~~p--~~GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~  153 (267)
                      +.|  ..||+|.|||+++||+.|+   ++++++|+...+.+......              .+...+             
T Consensus       119 ~~p~~~~GG~T~~~d~~~a~~~L~---~~~~~~~~~~~~~~~~~~~~--------------~~~~~~-------------  168 (271)
T d1nx4a_         119 EIKNVKFRGATTVCDHALACQEMP---AHLLRVLEEETFEVRVLERG--------------YYVDVS-------------  168 (271)
T ss_dssp             EEESCSSSSCEEEEEHHHHHHHSC---HHHHHHHHHSCEEEEEC------------------------------------
T ss_pred             ecCCCCCCcceeeeeHHHHHHhcC---HHHHHHHhcCEEEEcccccc--------------ccccCC-------------
Confidence            855  5699999999999999999   67778888776666422111              000000             


Q ss_pred             ceEEccCCceEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEE
Q 024481          154 KLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECV  231 (267)
Q Consensus       154 ~~~w~~dg~~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~  231 (267)
                           ..     ....+|++..|+.++.++++..........       ......|...+.+.++++.|.+..  ++++|
T Consensus       169 -----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~e~~~~l~~l~~~~~~~~~~~  231 (271)
T d1nx4a_         169 -----PD-----GWFKVPVFTDLGWVRKMLIYFPFDEGQPAS-------WEPRIVGFTDHETQAFFQELGAFLKQPRYYY  231 (271)
T ss_dssp             -------------CEECCSEEECSSCEEECCBCCCCTTSCCS-------EEEEETTCCHHHHHHHHHHHHHHHTSTTTEE
T ss_pred             -----cc-----ceecCceeccCCCcccceEEECCCCceecc-------cccccCCCCHHHHHHHHHHHHHHHcCCCeEE
Confidence                 00     112344444454444443332211100000       000011222234456677776543  67899


Q ss_pred             EeeccCCCEEEEeCcccccccCCCCC--cceeee
Q 024481          232 AIPWQNGDVLLIDNLAVLHARRSSSR--PRHILA  263 (267)
Q Consensus       232 ~~~Wq~GDvli~DN~rvlHgR~~f~g--~R~ll~  263 (267)
                      .|+|++||||||||+++||||++|++  .+|+|.
T Consensus       232 ~~~w~~GDili~DN~~vlH~R~~f~~~~~~R~L~  265 (271)
T d1nx4a_         232 KHFWEDGDLLIMDNRRVIHEREEFNDDDIVRRLY  265 (271)
T ss_dssp             EECCCTTCEEEEETTTEEEEECCCCCTTCEEEEE
T ss_pred             EEEecCCCEEEEecCeeeECCcccCCCCCcEEEE
Confidence            99999999999999999999999964  345443

>d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Clavaminate synthase
domain: Clavaminate synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.88  E-value=4.1e-23  Score=184.76  Aligned_cols=151  Identities=16%  Similarity=0.192  Sum_probs=102.5

Q ss_pred             cccccccccCCCCceEEEeeeecCCCCCC-CcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCcc
Q 024481           55 LWLERYMLLPQFPSKLFFFCEVEPVSGGD-TPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWK  133 (267)
Q Consensus        55 lwHtD~~y~~~~P~~~~l~c~~~p~~GGe-T~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~  133 (267)
                      .||||++|.+.+|++++|+|++++.+||+ |.++|++.+++.|+   |+.++.|.+..+.+..  +              
T Consensus       141 ~~HtD~ay~~~~Pd~v~L~Clr~~~~GG~st~v~~~~~~~~~L~---~~~~~~L~~~~~~~~~--~--------------  201 (323)
T d1ds1a_         141 EFHTEMAYHRLQPNYVMLACSRADHERTAATLVASVRKALPLLD---ERTRARLLDRRMPCCV--D--------------  201 (323)
T ss_dssp             EEECTTTTBTTCCSEEEEEEEECCTTCCCCEEEEEHHHHGGGSC---HHHHHHHBTCCEEECC--C--------------
T ss_pred             cccccCCCCCCCCceeEEEEeeeCCCCCcceechhHHHHHHhCC---HHHHHHHHhCCEEecc--c--------------
Confidence            48999999999999999999999999887 56777888999998   7889999865444321  1              


Q ss_pred             ccccccCHHHHHHHHHhcCCceEEccCCceEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCC
Q 024481          134 SIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSP  213 (267)
Q Consensus       134 ~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~  213 (267)
                      ..|....                   +. .. .....+++ .++..+..+.|+...                  ....++
T Consensus       202 ~~~~~~~-------------------~~-~~-~~~~~~~l-~~~~~~~~~r~~~~~------------------~~~~~~  241 (323)
T d1ds1a_         202 VAFRGGV-------------------DD-PG-AIAQVKPL-YGDADDPFLGYDREL------------------LAPEDP  241 (323)
T ss_dssp             GGGCCCC-------------------CS-GG-GSEEECSE-ESCTTSCEECCBTTT------------------BCCCSH
T ss_pred             cccccCC-------------------Cc-cc-ceeeeeeE-eCCCCeEEEEecchh------------------ccCCCH
Confidence            1111100                   00 00 00112222 222222233443211                  112235


Q ss_pred             CcHHHHHHHHHHhhccEEEeeccCCCEEEEeCcccccccCCCCC-----cceeeec
Q 024481          214 YPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSSR-----PRHILAS  264 (267)
Q Consensus       214 ~~~~~l~~l~~~~~~~~~~~~Wq~GDvli~DN~rvlHgR~~f~g-----~R~ll~~  264 (267)
                      ...++++.|.++++++++.|+|++|||+||||+++||||++|++     .|+++..
T Consensus       242 ~~~~al~~L~~~~~~~~~~~~l~pGDili~DN~rvlHgR~~F~~~~dg~dR~L~R~  297 (323)
T d1ds1a_         242 ADKEAVAALSKALDEVTEAVYLEPGDLLIVDNFRTTHARTPFSPRWDGKDRWLHRV  297 (323)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECCCTTCEEEEETTTEEEEECCCCCCCSSCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHhheEEEecCCCCEEEEecCceeECCCCCCCCCCCCceEEEEE
Confidence            56788999999999999999999999999999999999999963     4666543

>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Gab protein (hypothetical protein YgaT)
domain: Gab protein (hypothetical protein YgaT)
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.4e-19  Score=159.66  Aligned_cols=141  Identities=13%  Similarity=0.124  Sum_probs=92.5

Q ss_pred             cccCCccccccccccCCCCceEEEeeee-cCCCCCCCcc--eeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCC
Q 024481           49 LFTRKWLWLERYMLLPQFPSKLFFFCEV-EPVSGGDTPL--VLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLT  125 (267)
Q Consensus        49 ~~t~~~lwHtD~~y~~~~P~~~~l~c~~-~p~~GGeT~~--aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~  125 (267)
                      +||+ .-||||.+|...+|++++|+|++ .+.+||+|.|  +|+.++++.|..+.      +....+.+.  .+..    
T Consensus       139 Aytn-L~lHTDgtY~~e~Pg~qlLhcL~E~~~~GGESlll~vD~~e~le~L~~~~------~~~~~~~~~--~p~~----  205 (311)
T d1jr7a_         139 PHRV-MELHNDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDNYFRHP------LARRPMRFA--APPS----  205 (311)
T ss_dssp             TTCC-EEEECSCTTSSSCCCEEEEEEEEEESCCBCCEEEEEGGGCTTHHHHHTSG------GGGSCEEEC--CSSC----
T ss_pred             cccC-cccccCCCCCCchhhhhhhheeeecccCCCceEEeccchHHHHHHhhhcc------cccceeEEc--cCCC----
Confidence            4554 34799999999999999999995 6789999999  89988888887532      332222221  1110    


Q ss_pred             CCCCCCccccccccCHHHHHHHHHhcCCceEEccCCceEEEEeeeCeeEecCCCCceEE-eeccchhccccccCCCCCCc
Q 024481          126 SPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW-FNSIVMAYTCWKDTQNDPVK  204 (267)
Q Consensus       126 ~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~~~~~~~~P~v~~hP~TG~~~l-fn~~~~~~~~~~~~~~~~~~  204 (267)
                              .                          . . .+...+|++..++. |+... |+..   ...        + 
T Consensus       206 --------~--------------------------~-~-~~~~~~pi~~~d~~-g~~~iry~d~---~~~--------p-  236 (311)
T d1jr7a_         206 --------K--------------------------N-V-SKDVFHPVFDVDQQ-GRPVMRYIDQ---FVQ--------P-  236 (311)
T ss_dssp             --------T--------------------------T-C-CCCEEECSEEECTT-SCEEECCCTT---TEE--------C-
T ss_pred             --------c--------------------------c-c-ccceeeeeeccccC-Cceeeccchh---ccc--------c-
Confidence                    0                          0 0 02236899987765 66532 2110   000        0 


Q ss_pred             ccccCCCCCCcHHHHHHHHHHh--hccEEEeeccCCCEEEEeCcccccccCCCCC
Q 024481          205 AVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQNGDVLLIDNLAVLHARRSSSR  257 (267)
Q Consensus       205 ~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq~GDvli~DN~rvlHgR~~f~g  257 (267)
                           . .......++.|.+.+  +++++.++|+|||+||+||+|+||||++|++
T Consensus       237 -----~-~~~q~~al~~Lsd~L~~p~~~~~fkL~pGd~lI~DN~RvLHGR~aF~~  285 (311)
T d1jr7a_         237 -----K-DFEEGVWLSELSDAIETSKGILSVPVPVGKFLLINNLFWLHGRDRFTP  285 (311)
T ss_dssp             -----C-SHHHHHHHHHHHHHHHTCTTCEEECCCTTCEEEEETTTEEEEECCBCC
T ss_pred             -----c-chhHHHHHHHHHHHHhCcccEEEEEcCCCCEEEEeCCEEeeCCCCCCC
Confidence                 0 011123566666654  4589999999999999999999999999964