Citrus Sinensis ID: 024528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MSTVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTSWQLGTISYSSYKFTAAD
Secondary Structure (PSIPRED)
ccccccEEEEccccccccccccHHHHHHHHHHHHHHccccccEEEEEccccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEccccccccEEEEEccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHccccccccHHHHHHHHccccccccEEEEEcEEEEcEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccccccccHHHHHHHHHHHcccccccEEEEEEccccccccEEEcccccccEEccccccHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHHHccEEEEEccccHccHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHccccHHcccHHEHHHcccccccccEEEEcccEEccEEEHEEEEcccc
Coil and Loop (DISEMBL)
mstvkntffishgsptlsideslpaRHFLKAWKEQvftqrpnsilvisghwetdvptvnvvqqndviydfynfpeqmyklkypapgapELAKRVKQLLTEsgfnhvnedtkrgldhgawvplmlmypeanipvcqlsvqtrkdgthhynmgkalaplkdegvliigsgsathnlralqfdgdsvASWASEFDNWLKDALLQgryedvnhyeqkapcakkahpwpdhfyPLHVAMGAAGENANAELIHTswqlgtisyssykftaad
Flexible Loop (DISEMBL)
mstvkntffishgsptlsidesLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESgfnhvnedtkrGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTswqlgtisysSYKFTAAD
Low Complexity Region (SEG)
MSTVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMgaagenanaeLIHTSWQLGTISYSSYKFTAAD
Disordered region (IsUnstruct)
*******FFISHG*PTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTSWQLGTISYSSYKF****
Disordered Region (DISOPRED)
*STVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTSWQLGTISYSSYKFTAA*
Disordered Region (DISEMBL)
MSTVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTSWQLGTISYSSYKFTAAD
Disordered Region (DISPRO)
***VKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTSWQLGTISYSSYKFTA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTSWQLGTISYSSYKFTAAD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q949R4	269	4,5-DOPA dioxygenase extr	yes	no	0.954	0.944	0.694	1e-103
Q7XA48	271	4,5-DOPA dioxygenase extr	N/A	no	0.984	0.966	0.589	2e-88
P24197	262	Uncharacterized protein Y	N/A	no	0.951	0.965	0.340	6e-38
O74741	297	4,5-DOPA dioxygenase extr	yes	no	0.872	0.781	0.307	3e-23

>sp|Q949R4|DIOXL_ARATH 4,5-DOPA dioxygenase extradiol-like protein OS=Arabidopsis thaliana GN=At4g15093 PE=2 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/259 (69%), Positives = 209/259 (80%), Gaps = 5/259 (1%)

Query: 1   MSTVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNV 60
           M  V  TFF+SHGSPTLSID+SL AR F K+W ++V  Q+P SILVIS HW+T  P+VN 
Sbjct: 1   MEKVNQTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNT 60

Query: 61  VQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLT-ESGFNHVNEDTKRGLDHGAW 119
           V +N+ I+DF  FP+ MYKLKY APGA EL KRVK+LL  E G   V+EDTKRGLDHGAW
Sbjct: 61  VLRNNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAW 120

Query: 120 VPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQF 179
           VPLMLMYPEA+IP+CQLSVQ+ ++G++HYNMGKALA LKDEGVLIIGSGSATHNLR L F
Sbjct: 121 VPLMLMYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDF 180

Query: 180 ---DGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGA 236
              DG  V  WA EFD+WL+D+LLQGRY DVN +E+KAP AK AHPWP+H YPLHV MGA
Sbjct: 181 NITDGSPVP-WALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGA 239

Query: 237 AGENANAELIHTSWQLGTI 255
           AG +A AE IHTSWQLGT+
Sbjct: 240 AGGDAKAEQIHTSWQLGTL 258

May be involved in the metabolism of aromatic compounds.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 3EC: .EC: -EC: .EC: -

>sp|Q7XA48|DODA_PORGR 4,5-DOPA dioxygenase extradiol OS=Portulaca grandiflora GN=DODA PE=2 SV=1

 Score =  325 bits (833), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/263 (58%), Positives = 191/263 (72%), Gaps = 1/263 (0%)

Query: 3   TVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQ 62
           + K +FF+SHG+P +  DES  AR+FL  WK+ VF  +P SILV+S HWETDVP V+  Q
Sbjct: 8   SFKESFFLSHGNPAMLADESFIARNFLLGWKKNVFPVKPKSILVVSAHWETDVPCVSAGQ 67

Query: 63  QNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPL 122
             +VIYDF   P  M+++KYPAPG P+LAKRV++LL   GF     D +RG DH +WVPL
Sbjct: 68  YPNVIYDFTEVPASMFQMKYPAPGCPKLAKRVQELLIAGGFKSAKLDEERGFDHSSWVPL 127

Query: 123 MLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGD 182
            +M PEA+IPVCQLSVQ   D THH+N+G+ALAPLK EGVL IGSG A H         D
Sbjct: 128 SMMCPEADIPVCQLSVQPGLDATHHFNVGRALAPLKGEGVLFIGSGGAVHPSDDTPHWFD 187

Query: 183 SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCA-KKAHPWPDHFYPLHVAMGAAGENA 241
            VA WA+EFD WL+DALL+GRYEDVN+Y+ KAP   K AHP P+HF PLHVAMGA GE +
Sbjct: 188 GVAPWAAEFDQWLEDALLEGRYEDVNNYQTKAPEGWKLAHPIPEHFLPLHVAMGAGGEKS 247

Query: 242 NAELIHTSWQLGTISYSSYKFTA 264
            AELI+ +W  GT+ Y+SYKFT+
Sbjct: 248 KAELIYRTWDHGTLGYASYKFTS 270

Opens the cyclic ring of dihydroxy-phenylalanine (DOPA) between carbons 4 and 5, thus producing an unstable seco-DOPA that rearranges nonenzymatically to betalamic acid.

Portulaca grandiflora (taxid: 3583)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

EC: .

EC: -

>sp|P24197|YGID_ECOLI Uncharacterized protein YgiD OS=Escherichia coli (strain K12) GN=ygiD PE=1 SV=3

 Score =  157 bits (398), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/267 (34%), Positives = 149/267 (55%), Gaps = 14/267 (5%)

Query: 2   STVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFT-QRPNSILVISGHWETDVPTVNV 60
           ST     F+ HGSP   ++++L    + ++W++   T  RP +I+V+S HW T    V  
Sbjct: 3   STRMPALFLGHGSPMNVLEDNL----YTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTA 58

Query: 61  VQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWV 120
           ++    I+DF  FP+ +Y   YPAPG+P LA+R+ +LL         E    G DHG+W 
Sbjct: 59  METPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKE--AWGFDHGSWG 116

Query: 121 PLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFD 180
            L+ MYP+A+IP+ QLS+ + K    H+ MG+ LA L+DEG++++ SG+  HNLR +++ 
Sbjct: 117 VLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWH 176

Query: 181 GDSVA-SWASEFDNWLKDALL-QGRYED---VNHYEQKAPCAKKAHPWPDHFYPLHVAMG 235
           GDS    WA+ F+ ++K  L  QG  E    VN+ + +      ++P P+H+ PL   +G
Sbjct: 177 GDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEG--GTLSNPTPEHYLPLLYVLG 234

Query: 236 AAGENANAELIHTSWQLGTISYSSYKF 262
           A        +     ++G++S  S + 
Sbjct: 235 AWDGQEPITIPVEGIEMGSLSMLSVQI 261

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

EC: .

EC: -

>sp|O74741|DIOXL_SCHPO 4,5-DOPA dioxygenase extradiol-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1709.16c PE=3 SV=2

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 126/257 (49%), Gaps = 25/257 (9%)

Query: 7   TFFISHGSPTLSI-----DESLPARHFLKAWKEQVFTQ---------RPNSILVISGHWE 52
             +++HGSP L +     DE       L     Q   Q         RP  I+V S H+E
Sbjct: 25  ALYLAHGSPFLMLPQSSDDEVFSNDSKLGGLHYQFLEQLGPFLLEKFRPKGIIVFSAHYE 84

Query: 53  T--DVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDT 110
           +   V   +   +N + YD+Y FP+ +Y++K+ + G+  +A ++   L E          
Sbjct: 85  SRGSVEVYSRDDENPLFYDYYGFPDYLYQIKFHSKGSKRIADQIISALKEYQIPAKTVSG 144

Query: 111 KRGLDHGAWVPLMLMYPEA-NIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGS 169
            RGLDHG +VP  +M+P+  NIP+ ++S+ T  D    Y +G+AL  L+ E  LI+  G 
Sbjct: 145 DRGLDHGVFVPFKIMFPDGLNIPLIEVSMHTL-DPMQLYKVGQALQSLRKE-YLIVSGGL 202

Query: 170 ATHNLRALQ-FDGDSVASWASEFDNWLKDALLQGRYED-VNHY--EQKAPCAKKAHPWPD 225
             H    L  F+ D+ A    EF   +  A+   +  D +N     Q  P  +KAHP  +
Sbjct: 203 NIHTFEDLSAFNEDTAADGYKEFQLDILKAIETDKQNDRLNKLLGLQLHPYFRKAHPREE 262

Query: 226 HFYPLHVA--MGAAGEN 240
           HF PL+VA  +G++G++
Sbjct: 263 HFVPLYVAAGLGSSGKS 279

May be involved in the metabolism of aromatic compounds.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
225441813	263	PREDICTED: 4,5-DOPA dioxygenase extradio	0.969	0.980	0.786	1e-121
356559963	266	PREDICTED: 4,5-DOPA dioxygenase extradio	0.984	0.984	0.768	1e-120
255644965	266	unknown [Glycine max]	0.984	0.984	0.765	1e-119
388501808	267	unknown [Lotus japonicus]	0.984	0.981	0.760	1e-117
388491700	267	unknown [Lotus japonicus]	0.981	0.977	0.755	1e-115
359480904	266	PREDICTED: 4,5-DOPA dioxygenase extradio	0.977	0.977	0.749	1e-115
357498833	266	4,5-DOPA dioxygenase extradiol-like prot	0.977	0.977	0.755	1e-114
217075713	266	unknown [Medicago truncatula]	0.977	0.977	0.751	1e-113
147844961	266	hypothetical protein VITISV_013290 [Viti	0.977	0.977	0.741	1e-113
388491364	266	unknown [Medicago truncatula]	0.977	0.977	0.748	1e-112

>gi|225441813|ref|XP_002283881.1| PREDICTED: 4,5-DOPA dioxygenase extradiol-like protein [Vitis vinifera] gi|147811122|emb|CAN61349.1| hypothetical protein VITISV_021798 [Vitis vinifera] gi|297739669|emb|CBI29851.3| unnamed protein product [Vitis vinifera]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/258 (78%), Positives = 228/258 (88%)

Query: 6   NTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQND 65
           +TF+ISHGSPTLSIDESLPARHFLK+WKE+V  QRP SILVIS HWET  PTVNVV QND
Sbjct: 2   DTFYISHGSPTLSIDESLPARHFLKSWKEKVMGQRPTSILVISAHWETHEPTVNVVPQND 61

Query: 66  VIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLM 125
            IYDFY FP+ MYKLKYPAPGAPELAKRVK+LL  S F  V ED KRGLDHGAWVPLMLM
Sbjct: 62  TIYDFYGFPKSMYKLKYPAPGAPELAKRVKELLMASNFKSVKEDKKRGLDHGAWVPLMLM 121

Query: 126 YPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVA 185
           YPEA+IPVCQLSVQT +DG++HYNMG+ALAPL++EGVLIIGSGSATHNLRAL  + +SV 
Sbjct: 122 YPEADIPVCQLSVQTNRDGSYHYNMGRALAPLREEGVLIIGSGSATHNLRALNPNSESVV 181

Query: 186 SWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAEL 245
            WA EFD WLK+ALL GRYED+NHYE+KAP A++AHPWP+HFYPLHVAMGAAGENA A+L
Sbjct: 182 PWAYEFDTWLKEALLDGRYEDINHYEEKAPHAREAHPWPEHFYPLHVAMGAAGENAKAKL 241

Query: 246 IHTSWQLGTISYSSYKFT 263
           IH SW LGT+SY+SY+FT
Sbjct: 242 IHHSWSLGTLSYASYQFT 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559963|ref|XP_003548265.1| PREDICTED: 4,5-DOPA dioxygenase extradiol-like protein-like [Glycine max]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/264 (76%), Positives = 241/264 (91%), Gaps = 2/264 (0%)

Query: 3   TVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQ 62
            +K+TF+ISHGSPTLSIDES+ AR FL++WK+ VF QRP+SILVISGHWET VPTVNVV 
Sbjct: 2   ALKDTFYISHGSPTLSIDESIQARKFLQSWKKDVFPQRPSSILVISGHWETAVPTVNVVD 61

Query: 63  Q-NDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVP 121
             ND IYDFY FP+QMY+LKYPAPGAP+LA+RVK+LL +SGF+HV+EDTKRGLDHGAWVP
Sbjct: 62  SINDTIYDFYGFPKQMYQLKYPAPGAPQLARRVKELLKKSGFSHVDEDTKRGLDHGAWVP 121

Query: 122 LMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDG 181
           L LMYPEA+IPVCQ+S+Q+++DGT+HYN+GKALAPLKDEGVLI+GSGSA HNLRAL+   
Sbjct: 122 LFLMYPEADIPVCQISIQSQQDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLRALE-PH 180

Query: 182 DSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENA 241
            +VA WA EFDNWLKDALL+GRYEDVNHYEQKAP AKKAHPWPDHFYPLHVA+GAAGE+A
Sbjct: 181 STVAPWALEFDNWLKDALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGEDA 240

Query: 242 NAELIHTSWQLGTISYSSYKFTAA 265
            A+LIH+S +LG++SY+SY+FT+A
Sbjct: 241 KAKLIHSSIELGSLSYASYQFTSA 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644965|gb|ACU22982.1| unknown [Glycine max]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/264 (76%), Positives = 240/264 (90%), Gaps = 2/264 (0%)

Query: 3   TVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQ 62
            +K+TF+ISHGSPTLSIDES+ AR FL++WK+ VF QRP+SILVISGHWET VPTVNVV 
Sbjct: 2   ALKDTFYISHGSPTLSIDESIQARKFLQSWKKDVFPQRPSSILVISGHWETAVPTVNVVD 61

Query: 63  Q-NDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVP 121
             ND IYDFY FP+QMY+LKYPAPGAP+LA+RVK+LL +SGF+HV+EDTKRGLDHGAWVP
Sbjct: 62  SINDTIYDFYGFPKQMYQLKYPAPGAPQLARRVKELLKKSGFSHVDEDTKRGLDHGAWVP 121

Query: 122 LMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDG 181
           L LMYPEA+IPVCQ+S+Q+++DGT+HYN+GKALAPLKDEGVLI+GSGSA HNLRAL+   
Sbjct: 122 LFLMYPEADIPVCQISIQSQQDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLRALE-PH 180

Query: 182 DSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENA 241
            +VA WA EFDNWLKDALL+GRYE VNHYEQKAP AKKAHPWPDHFYPLHVA+GAAGE+A
Sbjct: 181 STVAPWALEFDNWLKDALLEGRYEVVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGEDA 240

Query: 242 NAELIHTSWQLGTISYSSYKFTAA 265
            A+LIH+S +LG++SY+SY+FT+A
Sbjct: 241 KAKLIHSSIELGSLSYASYQFTSA 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501808|gb|AFK38970.1| unknown [Lotus japonicus]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/263 (76%), Positives = 230/263 (87%), Gaps = 1/263 (0%)

Query: 3   TVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQ 62
            +K+TF+ISHGSPTLSIDESL AR FL++WK++VF  RP SILVISGHW+T VPTVNVV 
Sbjct: 2   ALKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVVD 61

Query: 63  Q-NDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVP 121
             ND IYDFY FP+ MY+LKYPAPGAP LAKRVK+LL E GF+ V+ED KRGLDHGAWVP
Sbjct: 62  STNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWVP 121

Query: 122 LMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDG 181
           L+LMYPEA+IPVCQLSVQ+  DGTHHYN+GKALAPLKDEGVLI+GSGSA HNLRAL+   
Sbjct: 122 LLLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERHA 181

Query: 182 DSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENA 241
              A WA EFDNWLK+ALL+GRYEDVNHYEQKAP AKKAHPWPDHFYPLHVA+GAAGEN+
Sbjct: 182 TVAAPWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGENS 241

Query: 242 NAELIHTSWQLGTISYSSYKFTA 264
            A+LIH+S  LG++SY+SY+FT+
Sbjct: 242 KAKLIHSSIDLGSLSYASYQFTS 264

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491700|gb|AFK33916.1| unknown [Lotus japonicus]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/262 (75%), Positives = 228/262 (87%), Gaps = 1/262 (0%)

Query: 4   VKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQ 63
           +K+TF+ISHGSPTLSIDESL AR FL++WK++VF  RP SILVISGHW+T VPTVNVV  
Sbjct: 3   LKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVVDS 62

Query: 64  -NDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPL 122
            ND IYDFY FP+  Y+LKYPAPGAP LAKRVK+LL E GF+ V+ED KRGLDHGAWVPL
Sbjct: 63  TNDTIYDFYGFPKPTYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWVPL 122

Query: 123 MLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGD 182
           +LMYPEA+IPVCQLSVQ+  DGTHHYN+GKALAPLKDEGVLI+GSGSA HNLRAL+    
Sbjct: 123 LLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERHAT 182

Query: 183 SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENAN 242
             A WA EFDNWLK+ALL+GRYEDVNHYEQKAP AKKAHPWPDH YPLHVA+GAAGEN+ 
Sbjct: 183 VAAPWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHLYPLHVAVGAAGENSK 242

Query: 243 AELIHTSWQLGTISYSSYKFTA 264
           A+LIH+S  LG++SY+SY+FT+
Sbjct: 243 AKLIHSSIDLGSLSYASYQFTS 264

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480904|ref|XP_002267696.2| PREDICTED: 4,5-DOPA dioxygenase extradiol-like protein-like [Vitis vinifera] gi|296084824|emb|CBI27706.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/263 (74%), Positives = 225/263 (85%), Gaps = 3/263 (1%)

Query: 6   NTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQND 65
           +TF+ISHGSPTLSIDESLPARHFLK+W+E+V  Q P SILVISGHWET  PTVNVV +ND
Sbjct: 2   DTFYISHGSPTLSIDESLPARHFLKSWREKVMGQPPTSILVISGHWETHEPTVNVVPRND 61

Query: 66  VIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLM 125
            IYDFY FP+ MY+ KYPAPGAPELAKRVK+LL  S F  VNED +RGLDHGAWVPLMLM
Sbjct: 62  TIYDFYGFPKPMYEFKYPAPGAPELAKRVKELLMASDFKCVNEDKERGLDHGAWVPLMLM 121

Query: 126 YPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDS-- 183
           YPEA+IPVCQLSVQT +DG++HYNMGKALAPL++EGVLI GSGSATHNLR +  + DS  
Sbjct: 122 YPEADIPVCQLSVQTNRDGSYHYNMGKALAPLREEGVLIFGSGSATHNLRTINRNSDSKA 181

Query: 184 -VASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENAN 242
            V  WA EFD WLK+ALL GRYEDVN YE+KAP A++AHPWPDHFYPLHVAMGAAG++A 
Sbjct: 182 AVVPWAYEFDTWLKEALLDGRYEDVNCYEEKAPHAREAHPWPDHFYPLHVAMGAAGKDAK 241

Query: 243 AELIHTSWQLGTISYSSYKFTAA 265
           A+LIH SW  GT+SY+SY+FT A
Sbjct: 242 AKLIHHSWSFGTLSYASYQFTTA 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498833|ref|XP_003619705.1| 4,5-DOPA dioxygenase extradiol-like protein [Medicago truncatula] gi|355494720|gb|AES75923.1| 4,5-DOPA dioxygenase extradiol-like protein [Medicago truncatula]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/262 (75%), Positives = 229/262 (87%), Gaps = 2/262 (0%)

Query: 4   VKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQ 63
           +K+TF+ISHGSPTLSID+S+ AR FL++WK+ VF +RP SILVISGHW+T VPTVNV+Q 
Sbjct: 3   LKDTFYISHGSPTLSIDDSIEARKFLQSWKKDVFEERPKSILVISGHWDTTVPTVNVIQT 62

Query: 64  -NDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPL 122
            ND I+DFY FP+ MY+LKYPAPGAPELAKRVK+LL +SGF+ V+ED KRGLDHGAWVPL
Sbjct: 63  TNDTIHDFYGFPKPMYQLKYPAPGAPELAKRVKELLNKSGFDRVDEDKKRGLDHGAWVPL 122

Query: 123 MLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGD 182
           MLMYPEA+IPVCQLSVQ+  DGT+HYN+GKALAPLKDEGVLI+GSGSA HNL  L     
Sbjct: 123 MLMYPEADIPVCQLSVQSDLDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLGTLNPRA- 181

Query: 183 SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENAN 242
            VA WA EFDNWLKDALL GRYEDVNHYEQKAP AKKAHP PDHFYPLHVA+GAAGEN+ 
Sbjct: 182 GVAPWALEFDNWLKDALLDGRYEDVNHYEQKAPHAKKAHPHPDHFYPLHVAIGAAGENSK 241

Query: 243 AELIHTSWQLGTISYSSYKFTA 264
           A+LIH+S  LGT+SY+SY+FT+
Sbjct: 242 AKLIHSSINLGTLSYASYQFTS 263

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075713|gb|ACJ86216.1| unknown [Medicago truncatula]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/262 (75%), Positives = 228/262 (87%), Gaps = 2/262 (0%)

Query: 4   VKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQ 63
           +K+TF+ISHGSPTLSID+S+ AR FL++WK+ VF +RP SILVISGHW+T VPTVNV+Q 
Sbjct: 3   LKDTFYISHGSPTLSIDDSIEARKFLQSWKKDVFEERPKSILVISGHWDTTVPTVNVIQT 62

Query: 64  -NDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPL 122
            ND I+DFY FP+ MY+LKYPAPGAPELAKRVK+LL +SGF+ V+ED KRGLDHGAWVPL
Sbjct: 63  TNDTIHDFYGFPKPMYQLKYPAPGAPELAKRVKELLNKSGFDRVDEDKKRGLDHGAWVPL 122

Query: 123 MLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGD 182
           MLMYPEA+IPVCQLSVQ+  DGT+HYN+GKALAPLKDEGVLI+GSGSA HNL  L     
Sbjct: 123 MLMYPEADIPVCQLSVQSDLDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLGTLNPRA- 181

Query: 183 SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENAN 242
            VA WA EFDNWLKDALL GRYEDVNHYEQKAP AKKAHP PDHFYPLHV +GAAGEN+ 
Sbjct: 182 GVAPWALEFDNWLKDALLDGRYEDVNHYEQKAPHAKKAHPHPDHFYPLHVVIGAAGENSK 241

Query: 243 AELIHTSWQLGTISYSSYKFTA 264
           A+LIH+S  LGT+SY+SY+FT+
Sbjct: 242 AKLIHSSINLGTLSYASYQFTS 263

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844961|emb|CAN83326.1| hypothetical protein VITISV_013290 [Vitis vinifera]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/263 (74%), Positives = 223/263 (84%), Gaps = 3/263 (1%)

Query: 6   NTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQND 65
           +TF+ISHGSPTLSIDESLPARHFLK+W+E+V  Q P SILVISGHWET  PTVNVV +ND
Sbjct: 2   DTFYISHGSPTLSIDESLPARHFLKSWREKVMGQPPTSILVISGHWETHEPTVNVVPRND 61

Query: 66  VIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLM 125
            IYDFY FP+ MY+ KYPAPGAPELAKRVK LL  S F  VNED +RGLDHGAWVPLMLM
Sbjct: 62  TIYDFYGFPKPMYEXKYPAPGAPELAKRVKXLLXASDFKCVNEDKERGLDHGAWVPLMLM 121

Query: 126 YPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGD--- 182
           YPEA+IPVCQLSVQT +DG++HYNMGKALAPL++EGVLI GSGSATHNLR +  + D   
Sbjct: 122 YPEADIPVCQLSVQTNRDGSYHYNMGKALAPLREEGVLIFGSGSATHNLRTINRNSDXKA 181

Query: 183 SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENAN 242
           +V  WA EFD WLK+ALL GRYEDVN YE+KAP A++AHPWPDHFYPLHVAMGAAG++A 
Sbjct: 182 AVVPWAYEFDTWLKEALLDGRYEDVNCYEEKAPHAREAHPWPDHFYPLHVAMGAAGKDAK 241

Query: 243 AELIHTSWQLGTISYSSYKFTAA 265
           A+LIH SW  GT+SY+ Y+FT A
Sbjct: 242 AKLIHHSWSFGTLSYAFYQFTTA 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491364|gb|AFK33748.1| unknown [Medicago truncatula]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/262 (74%), Positives = 227/262 (86%), Gaps = 2/262 (0%)

Query: 4   VKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQ 63
           +K+TF+ISHGSPTLSID+S+ AR FL++WK+ VF +RP SILVISGHW+T VPTVNV+Q 
Sbjct: 3   LKDTFYISHGSPTLSIDDSIEARKFLQSWKKDVFEERPKSILVISGHWDTTVPTVNVIQT 62

Query: 64  -NDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPL 122
            ND I+DFY FP+ MY+LKYPAPGAPELAKRVK+LL +SGF+ V+ED KRGLDHGAWVPL
Sbjct: 63  TNDTIHDFYGFPKPMYQLKYPAPGAPELAKRVKELLNKSGFDRVDEDKKRGLDHGAWVPL 122

Query: 123 MLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGD 182
           MLMYPEA+IPVCQLSVQ+  DGT+HYN+GKALAPLKDEGVLI+GSGSA HNL  L     
Sbjct: 123 MLMYPEADIPVCQLSVQSDLDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLGTLNPRA- 181

Query: 183 SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENAN 242
            VA WA EFDNWLKDALL GRYEDVNHYEQKAP AKKAHP PDHFYPLHV +GAAGEN+ 
Sbjct: 182 GVAPWALEFDNWLKDALLDGRYEDVNHYEQKAPHAKKAHPHPDHFYPLHVVIGAAGENSK 241

Query: 243 AELIHTSWQLGTISYSSYKFTA 264
           A+LIH+S  LGT+ Y+SY+FT+
Sbjct: 242 AKLIHSSINLGTLFYASYQFTS 263

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:505006468	269	LigB [Arabidopsis thaliana (ta	0.992	0.981	0.669	1.4e-96
UNIPROTKB|Q0C3K9	258	HNE_0958 "Extradiol-type ring-	0.939	0.968	0.447	6.1e-55
DICTYBASE|DDB_G0279843	271	DDB_G0279843 "Uncharacterized	0.977	0.959	0.392	2e-49
UNIPROTKB|Q885Q5	255	PSPTO_1776 "Uncharacterized pr	0.928	0.968	0.392	2.7e-45
UNIPROTKB|Q48FQ9	255	PSPPH_3633 "Extradiol-type rin	0.928	0.968	0.392	3.9e-44
TIGR_CMR|BA_1859	253	BA_1859 "oxidoreductase" [Baci	0.936	0.984	0.373	2.8e-43
UNIPROTKB|Q8EFR0	269	SO_1909 "Catalytic subunit of	0.827	0.817	0.426	2e-40
TIGR_CMR|SO_1909	269	SO_1909 "conserved hypothetica	0.827	0.817	0.426	2e-40
UNIPROTKB|P24197	262	ygiD "predicted dioxygenase" [	0.827	0.839	0.368	8.9e-38
UNIPROTKB|G4NGD8	341	MGG_04343 "Extradiol ring-clea	0.687	0.536	0.356	2.5e-26

TAIR|locus:505006468 LigB [Arabidopsis thaliana (taxid:3702)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 180/269 (66%), Positives = 210/269 (78%)

Query:     1 MSTVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNV 60
             M  V  TFF+SHGSPTLSID+SL AR F K+W ++V  Q+P SILVIS HW+T  P+VN 
Sbjct:     1 MEKVNQTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNT 60

Query:    61 VQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLT-ESGFNHVNEDTKRGLDHGAW 119
             V +N+ I+DF  FP+ MYKLKY APGA EL KRVK+LL  E G   V+EDTKRGLDHGAW
Sbjct:    61 VLRNNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAW 120

Query:   120 VPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQF 179
             VPLMLMYPEA+IP+CQLSVQ+ ++G++HYNMGKALA LKDEGVLIIGSGSATHNLR L F
Sbjct:   121 VPLMLMYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDF 180

Query:   180 ---DGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMXX 236
                DG  V  WA EFD+WL+D+LLQGRY DVN +E+KAP AK AHPWP+H YPLHV M  
Sbjct:   181 NITDGSPVP-WALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGA 239

Query:   237 XXXXXXXXLIHTSWQLGTISYSSYKFTAA 265
                      IHTSWQLGT+SYSSY FT++
Sbjct:   240 AGGDAKAEQIHTSWQLGTLSYSSYSFTSS 268

GO:0005737 "cytoplasm" evidence=ISM

GO:0006725 "cellular aromatic compound metabolic process" evidence=IEA;ISS

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q0C3K9 HNE_0958 "Extradiol-type ring-opening dioxygenase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 114/255 (44%), Positives = 154/255 (60%)

Query:     9 FISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIY 68
             F+SHGSPTL  D+ +PAR FL    + +   RP +ILV S HWET  P +        I+
Sbjct:     6 FVSHGSPTLIFDD-VPARDFLTQLGKTL--PRPKAILVASAHWETIAPRITASPAPPTIH 62

Query:    69 DFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE 128
             D+  FPE MY+ +YPAPG P LA R+K LL  +G +    D  RGLDHGAWVPL L +PE
Sbjct:    63 DYGGFPEVMYQQQYPAPGDPALAARIKALLDGAGIS-ATLDPARGLDHGAWVPLKLAWPE 121

Query:   129 ANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVA-SW 187
             A+IPV QLS+QT     HH  +G+AL PL +EGVLI+GSGS TH+LR++ + G +    W
Sbjct:   122 ADIPVLQLSLQTHLGPAHHLKLGEALRPLAEEGVLILGSGSLTHDLRSVSWRGPNAEPDW 181

Query:   188 ASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMXXXXXXXXXXLIH 247
                F +W+  AL +GR +D+ +Y + AP A + HP  +HF PL VA+           +H
Sbjct:   182 VKSFGDWVNTALAEGRVDDLVNYRRLAPNAARNHPSEEHFLPLFVALGAAGAGAKMERLH 241

Query:   248 TSWQLGTISYSSYKF 262
             TS     +   ++ F
Sbjct:   242 TSVTFSVLRMDTFAF 256

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=ISS

DICTYBASE|DDB_G0279843 DDB_G0279843 "Uncharacterized protein ygiD" [Dictyostelium discoideum (taxid:44689)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 106/270 (39%), Positives = 158/270 (58%)

Query:     1 MSTVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVF-TQRPNSILVISGHWETDVPTVN 59
             MS + N+ FISHG+P L +D S   R FLK   +  + + +P ++L+IS HWE    T+ 
Sbjct:     1 MSKLFNSIFISHGAPNLILDHSDKTREFLKTLSKNHYGSVKPKAVLLISAHWEEREFTIQ 60

Query:    60 VVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAW 119
                + DVIYDF  F  +MY++KYPA  +PEL  RV +L  ++    + +D KRG DHGAW
Sbjct:    61 TKPEPDVIYDFGGFEPEMYRMKYPAKTSPELIDRVSELFAKAKIP-LGKDNKRGYDHGAW 119

Query:   120 VPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQF 179
             +P+ L+YPEA++P+ QLS++   +   H+ +G  L PL++EG L++ SG + HNLRA+ F
Sbjct:   120 MPMKLVYPEADVPIVQLSIKENLNAAQHFQIGTILRPLREEGYLVLASGGSVHNLRAI-F 178

Query:   180 DGDSVA--SWASEFDNWLKDALLQ--G--RYEDVNHYEQKAPCAKKAHPWPDHFYPLHVA 233
             D       SWAS F+ WL++ + +  G  R +++  YE   P  K AHP  +H  P+ VA
Sbjct:   179 DPKYHLDPSWASNFEAWLQNTICEKSGKEREDELLKYES-LPYYKLAHPRSEHLIPVFVA 237

Query:   234 MXXXXXXXXXXLIHTSWQLGTISYSSYKFT 263
                         +H  W+    S SSY F+
Sbjct:   238 AGCASPDSKGVRVHDFWKTPVFSVSSYLFS 267

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006725 "cellular aromatic compound metabolic process" evidence=IEA

UNIPROTKB|Q885Q5 PSPTO_1776 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 102/260 (39%), Positives = 152/260 (58%)

Query:     7 TFFISHGSPTLSID--ESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQN 64
             + FISHGSPTL+++  ES PA   L A        RP +I+++S HWE+    VN   Q 
Sbjct:     4 SLFISHGSPTLALEPGESGPALAQLAA-----SLPRPRAIVMVSAHWESHELIVNGNPQP 58

Query:    65 DVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLML 124
             +  +DF  F  +++ ++YPAPG PEL + + +LLT +G      D++R  DHG WVPL L
Sbjct:    59 ETWHDFGGFAAELFAMQYPAPGLPELTRTIVELLTANGLP-ARIDSRRPFDHGVWVPLSL 117

Query:   125 MYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDG--D 182
             MYP+A+IPV Q+S+ +R+       +G+ALA L+++GVL+IGSGS THNL  L +    D
Sbjct:   118 MYPQADIPVVQVSLPSRQGPALQTQVGRALAGLREQGVLVIGSGSITHNLYDLDWSAAPD 177

Query:   183 SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMXXXXXXXX 242
              V  WA+EF +W+ D L       ++HY  +AP A +AHP  +H  PL+ A         
Sbjct:   178 RVEPWAAEFRDWIIDKLQSNDEAALHHYRTQAPHAVRAHPSDEHLLPLYFARGAGGAFS- 236

Query:   243 XXLIHTSWQLGTISYSSYKF 262
               + +  + +G +    Y+F
Sbjct:   237 --IAYQGFTMGALGMDIYRF 254

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48FQ9 PSPPH_3633 "Extradiol-type ring-opening dioxygenase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 102/260 (39%), Positives = 150/260 (57%)

Query:     7 TFFISHGSPTLSID--ESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQN 64
             + FISHGSP L+++  ES PA   L A        RP++I+V+S HWE+   TVN   + 
Sbjct:     4 SLFISHGSPMLALEPGESGPALTRLAA-----SLPRPSAIVVVSAHWESHELTVNANPEP 58

Query:    65 DVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLML 124
             +  +DF  F  +++ ++YPAPG PEL++ + +LL  SG      D++R  DHG WVPL L
Sbjct:    59 ETWHDFGGFAAELFAVQYPAPGLPELSRTIVELLAASGLP-ARIDSRRPFDHGVWVPLSL 117

Query:   125 MYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGD-- 182
             MYP A+IPV Q+S+ +R+       +G+ALA L+ +GVLIIGSGS THNLR L ++    
Sbjct:   118 MYPNADIPVVQVSLPSRQGPELQTRVGRALASLRAQGVLIIGSGSITHNLRDLDWNAGPG 177

Query:   183 SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMXXXXXXXX 242
             S   WA+ F +W+ D L       ++HY   AP A +AHP  +H  PL+ A         
Sbjct:   178 STEPWAATFRDWMIDKLQNDDEAALHHYRSLAPHAMRAHPSDEHLLPLYFARGAGGVFG- 236

Query:   243 XXLIHTSWQLGTISYSSYKF 262
               + +  + +G +    Y+F
Sbjct:   237 --IAYQGFTMGALGMDIYRF 254

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=ISS

TIGR_CMR|BA_1859 BA_1859 "oxidoreductase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 96/257 (37%), Positives = 149/257 (57%)

Query:     7 TFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQN-D 65
             + F++HGSP L+I ++     FLK   E   T +P +I++ + HWE++V T++      +
Sbjct:     4 SLFLAHGSPMLAIQDT-DYTSFLKTLGE---TYKPKAIVIFTAHWESEVLTISSTDNEYE 59

Query:    66 VIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLM 125
              IYDF  FP ++Y++KY A G+  +A  ++      G   V+ +  RGLDHG+W  L  M
Sbjct:    60 TIYDFGGFPPELYEIKYRAKGSSSIASMLETKFKNKGIP-VHHNMTRGLDHGSWTLLHRM 118

Query:   126 YPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVA 185
             YPEANIPV Q+SV         + +G+AL  L  E +L+IGSG   HNLRAL+++  +  
Sbjct:   119 YPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGSGVTVHNLRALKWNQTTPE 178

Query:   186 SWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMXXXXXXXXXXL 245
              WA EFD+W+   +     + + ++E+ AP A+ A P  +HF PL +AM          +
Sbjct:   179 QWAIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGE--V 236

Query:   246 IHTSWQLGTISYSSYKF 262
             IH S++LGT+SY   +F
Sbjct:   237 IHRSYELGTLSYLCLQF 253

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|Q8EFR0 SO_1909 "Catalytic subunit of aromatic ring-opening dioxygenase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 98/230 (42%), Positives = 132/230 (57%)

Query:     9 FISHGS---PTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQND 65
             F+ HG    P L+       R FL +   Q+    P +IL+I+ HWE    T++      
Sbjct:    13 FVPHGGGPLPLLNDANHHQLRDFLSSVGGQI--PMPKAILLITAHWEEAQVTLSSHPHPG 70

Query:    66 VIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLM 125
             +++D+Y FP + YKL YPAPG PELA+++  LL  SG   V  D +R  DHG +VPL LM
Sbjct:    71 MLFDYYGFPPEAYKLSYPAPGNPELAEKIASLLKASGIA-VKLDNQRAFDHGTFVPLKLM 129

Query:   126 YPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGD-SV 184
             YPEANIPV Q+S+    D   H  +G+ALA L+ +GVLI+GSG + HN+RA  F  D  V
Sbjct:   130 YPEANIPVVQMSLVQHLDPRAHIAIGEALASLRQQGVLIVGSGMSFHNMRAF-FSSDPKV 188

Query:   185 ASWASEFDNWLKDAL-LQGRYEDVNHYE-QKAPCAKKAHPWPDHFYPLHV 232
                + EFD+WL   L L   +      E Q AP A+ +HP  +H  PLHV
Sbjct:   189 LPRSQEFDDWLTQVLTLAPHHAKSQLIEWQSAPEARFSHPREEHLLPLHV 238

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1909 SO_1909 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 98/230 (42%), Positives = 132/230 (57%)

Query:     9 FISHGS---PTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQND 65
             F+ HG    P L+       R FL +   Q+    P +IL+I+ HWE    T++      
Sbjct:    13 FVPHGGGPLPLLNDANHHQLRDFLSSVGGQI--PMPKAILLITAHWEEAQVTLSSHPHPG 70

Query:    66 VIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLM 125
             +++D+Y FP + YKL YPAPG PELA+++  LL  SG   V  D +R  DHG +VPL LM
Sbjct:    71 MLFDYYGFPPEAYKLSYPAPGNPELAEKIASLLKASGIA-VKLDNQRAFDHGTFVPLKLM 129

Query:   126 YPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGD-SV 184
             YPEANIPV Q+S+    D   H  +G+ALA L+ +GVLI+GSG + HN+RA  F  D  V
Sbjct:   130 YPEANIPVVQMSLVQHLDPRAHIAIGEALASLRQQGVLIVGSGMSFHNMRAF-FSSDPKV 188

Query:   185 ASWASEFDNWLKDAL-LQGRYEDVNHYE-QKAPCAKKAHPWPDHFYPLHV 232
                + EFD+WL   L L   +      E Q AP A+ +HP  +H  PLHV
Sbjct:   189 LPRSQEFDDWLTQVLTLAPHHAKSQLIEWQSAPEARFSHPREEHLLPLHV 238

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P24197 ygiD "predicted dioxygenase" [Escherichia coli K-12 (taxid:83333)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 87/236 (36%), Positives = 139/236 (58%)

Query:     2 STVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFT-QRPNSILVISGHWETDVPTVNV 60
             ST     F+ HGSP   ++++L    + ++W++   T  RP +I+V+S HW T    V  
Sbjct:     3 STRMPALFLGHGSPMNVLEDNL----YTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTA 58

Query:    61 VQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKR-GLDHGAW 119
             ++    I+DF  FP+ +Y   YPAPG+P LA+R+ +LL       V  D +  G DHG+W
Sbjct:    59 METPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIP---VTLDKEAWGFDHGSW 115

Query:   120 VPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQF 179
               L+ MYP+A+IP+ QLS+ + K    H+ MG+ LA L+DEG++++ SG+  HNLR +++
Sbjct:   116 GVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKW 175

Query:   180 DGDSVA-SWASEFDNWLKDALL-QGRYED---VNHYEQKAPCAKKAHPWPDHFYPL 230
              GDS    WA+ F+ ++K  L  QG  E    VN+ + +      ++P P+H+ PL
Sbjct:   176 HGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEG--GTLSNPTPEHYLPL 229

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006725 "cellular aromatic compound metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|G4NGD8 MGG_04343 "Extradiol ring-cleavage dioxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 73/205 (35%), Positives = 109/205 (53%)

Query:    39 QRPNSILVISGHWET----DVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRV 94
             QRP +I++++ HW        P V    + ++IYD+Y FP + Y+ KYPAPGAP+LA R 
Sbjct:    99 QRPRAIILVTAHWVAKSPLSFPEVTSSARPELIYDYYGFPAESYQFKYPAPGAPDLAARF 158

Query:    95 KQLLTESGFN-HVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKA 153
               +  + G +  ++ D  RG DHG +VPL+L  PEA++PV Q+SV    D   H+ +G+A
Sbjct:   159 AAVAADHGLSPRLHPD--RGWDHGVFVPLLLARPEADVPVLQVSVLGSDDARAHFRLGRA 216

Query:   154 LAPLK----DEG---VLIIGSGSAT-HNLRALQFDGDSVA---SWASEFDNWLKDALLQG 202
             L  L+    + G   V I+GSG A+ HNLR +   GD      ++ +  D W        
Sbjct:   217 LGDLQRREAEAGNGPVAIVGSGFASFHNLR-IMLSGDGTIESDAFRTGHDAWNAAVTDAA 275

Query:   203 RYEDVNHYEQKAPCAKKAHPWPDHF 227
               +DV   E K    +    WPD +
Sbjct:   276 TTKDVQAREDKFAAWRS---WPDAY 297

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XA48	DODA_PORGR	1, ., 1, 3, ., -, ., -	0.5893	0.9849	0.9667	N/A	no
Q949R4	DIOXL_ARATH	1, ., 1, 3, ., -, ., -	0.6949	0.9548	0.9442	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.11.16	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
cd07363	253	cd07363, 45_DOPA_Dioxygenase, The Class III extrad	1e-127
COG3384	268	COG3384, COG3384, Aromatic ring-opening dioxygenas	2e-80
pfam02900	258	pfam02900, LigB, Catalytic LigB subunit of aromati	5e-79
PRK10628	246	PRK10628, PRK10628, LigB family dioxygenase; Provi	9e-54
cd07320	260	cd07320, Extradiol_Dioxygenase_3B_like, Subunit B	3e-22
cd07362	272	cd07362, HPCD_like, Class III extradiol dioxygenas	1e-07
cd07367	268	cd07367, CarBb, CarBb is the B subunit of the Clas	2e-06
cd07359	271	cd07359, PCA_45_Doxase_B_like, Subunit B of the Cl	4e-06
cd07951	256	cd07951, ED_3B_N_AMMECR1, The N-terminal domain, a	4e-05
cd07364	277	cd07364, PCA_45_Dioxygenase_B, Subunit B of the Cl	4e-05
PRK13364	278	PRK13364, PRK13364, protocatechuate 4,5-dioxygenas	5e-05
cd07949	276	cd07949, PCA_45_Doxase_B_like_1, The B subunit of	1e-04
cd07370	280	cd07370, HPCD, The Class III extradiol dioxygenase	6e-04
PRK13372	444	PRK13372, pcmA, protocatechuate 4,5-dioxygenase; P	8e-04
PRK13358	269	PRK13358, PRK13358, protocatechuate 4,5-dioxygenas	0.001

>gnl|CDD|153375 cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine

 Score =  362 bits (931), Expect = e-127
 Identities = 135/257 (52%), Positives = 182/257 (70%), Gaps = 6/257 (2%)

Query: 7   TFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDV 66
             FISHGSP L+++++ PA  FL+   +++   +P +ILVIS HWET  PTV    + + 
Sbjct: 2   VLFISHGSPMLALEDN-PATAFLRELGKELP--KPKAILVISAHWETRGPTVTASARPET 58

Query: 67  IYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMY 126
           IYDFY FP ++Y+++YPAPG+PELA+RV +LL  +G      D +RGLDHGAWVPL LMY
Sbjct: 59  IYDFYGFPPELYEIQYPAPGSPELAERVAELLKAAGI-PARLDPERGLDHGAWVPLKLMY 117

Query: 127 PEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDS-VA 185
           P+A+IPV QLS+    D   HY +G+ALAPL+DEGVLIIGSGS+ HNLRAL++ G +   
Sbjct: 118 PDADIPVVQLSLPASLDPAEHYALGRALAPLRDEGVLIIGSGSSVHNLRALRWGGPAPPP 177

Query: 186 SWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAEL 245
            WA EFD+WLKDAL  G  + +  Y +KAP A++AHP  +H  PL VA+GAAG +  A  
Sbjct: 178 PWALEFDDWLKDALTAGDLDALLDYWEKAPHARRAHPTEEHLLPLLVALGAAGGDE-ARR 236

Query: 246 IHTSWQLGTISYSSYKF 262
           +H S + G++S SSY+F
Sbjct: 237 LHDSIEYGSLSMSSYRF 253

This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Length = 253

>gnl|CDD|225919 COG3384, COG3384, Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]

 Score =  242 bits (620), Expect = 2e-80
 Identities = 102/265 (38%), Positives = 157/265 (59%), Gaps = 6/265 (2%)

Query: 1   MSTVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWET-DVPTVN 59
             T+    F+SHGSP L+++++  A   L+    ++   RP++I+V S HWET     V 
Sbjct: 5   KITMMPALFLSHGSPMLALEDN-AATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVT 63

Query: 60  VVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAW 119
             +  + I+DFY FP+++Y +KYPAPG+PELA+R+ +LL + G     +    GLDHG W
Sbjct: 64  ASEHPETIHDFYGFPDELYDVKYPAPGSPELAQRIVELLAKLGV--PADAPSWGLDHGTW 121

Query: 120 VPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQF 179
           VPL  M+P+A+IPV Q+S+        HY +G+AL  L++EGVLI+ SGS  HNLR L++
Sbjct: 122 VPLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEGVLILASGSLVHNLRLLKW 181

Query: 180 DGDSVASWASEFDNWLKDALL--QGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAA 237
            GD    WA EFD W+K  ++   G +  + +Y    P A  A P  +H  PL  A+GA 
Sbjct: 182 AGDGPYPWAREFDEWMKKNVVLWGGDFAPLCNYLPLYPDALIAEPGEEHLLPLLYALGAW 241

Query: 238 GENANAELIHTSWQLGTISYSSYKF 262
             +   E++   ++ G++S  + +F
Sbjct: 242 DGDEKVEIVTDLFESGSLSMLNAQF 266

Length = 268

>gnl|CDD|217276 pfam02900, LigB, Catalytic LigB subunit of aromatic ring-opening dioxygenase

 Score =  238 bits (610), Expect = 5e-79
 Identities = 100/266 (37%), Positives = 139/266 (52%), Gaps = 23/266 (8%)

Query: 11  SHGSPTLSIDESLP------ARHFLKAWKEQVFTQRPNSILVISGHWETDVPT---VNVV 61
           SHG P L++++  P              + ++   RP+ I+V+S HWETD+     V   
Sbjct: 1   SHGPPMLALEDPPPDVYWEPVFDGFAEIRARLRELRPDVIVVVSPHWETDLLPTFCVGAA 60

Query: 62  QQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVP 121
           +  + I+DF  FP+++Y+LKYPAPG PELA+ + +LL  +G +    D +RGLDHG WVP
Sbjct: 61  ETPEGIHDFGGFPDELYRLKYPAPGDPELAEAIAELLRAAGID-AAVDPRRGLDHGTWVP 119

Query: 122 LMLMYPEANIPVCQLSVQT--RKDGTHHYNMGKALAPL---KDEGVLIIGSGSATHNLRA 176
           L LMYP  +IPV  +SV +        HY +G+ALA      DE VL+IGSG  +HNLR 
Sbjct: 120 LSLMYPA-DIPVVPVSVNSVALLSPARHYELGRALAKAREKLDERVLVIGSGGLSHNLRV 178

Query: 177 LQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGA 236
            +        W  EFD W  D L  G  E +     +AP A   HP  +   P  VA+GA
Sbjct: 179 PRL---GPTPWNEEFDRWFLDLLKSGDLEALLAMLNEAPDAAAGHP-EEELLPWVVALGA 234

Query: 237 AGENANAELIHTSWQLGTISYSSYKF 262
            G    AE+    +  G +  S   F
Sbjct: 235 LG---GAEIRAEVFGYGAVPMSIAGF 257

Length = 258

>gnl|CDD|182598 PRK10628, PRK10628, LigB family dioxygenase; Provisional

 Score =  174 bits (442), Expect = 9e-54
 Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 12/214 (5%)

Query: 30  KAWKEQVFT-QRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAP 88
           +AW+    T  RP +I+V+S HW T    V  ++    I+DF  FP+ +Y   YPAPG+P
Sbjct: 11  RAWRTLGETLPRPKAIVVVSAHWYTRGTGVTAMETPRTIHDFGGFPQALYDTHYPAPGSP 70

Query: 89  ELAKRVKQLLTESGFNHVNEDTKR-GLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHH 147
            LA+R+ +LL       V  D +  G DHG+W  L+ MYP+A+IP+ QLS+ + K    H
Sbjct: 71  ALAQRLVELLAPV---PVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWH 127

Query: 148 YNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVA-SWASEFDNWLKDAL-LQGRYE 205
           + MG+ LA L+DEG++++ SG+  HNLR +++ GDS    WA  F+ ++K  L  QG  E
Sbjct: 128 FEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWAESFNQFVKANLTWQGPVE 187

Query: 206 D---VNHYEQKAPCAKKAHPWPDHFYPLHVAMGA 236
               VN+ + +      ++P P+H+ PL   +GA
Sbjct: 188 QHPLVNYLQHEG--GALSNPTPEHYLPLLYVLGA 219

Length = 246

>gnl|CDD|153371 cd07320, Extradiol_Dioxygenase_3B_like, Subunit B of Class III Extradiol ring-cleavage dioxygenases

 Score = 92.2 bits (229), Expect = 3e-22
 Identities = 54/243 (22%), Positives = 93/243 (38%), Gaps = 20/243 (8%)

Query: 9   FISHGSPT-LSIDESLPARHFLKAW-KEQVFTQRPNSILVISGHWETDVPT--VNVVQQN 64
            I HG     + D       +      +++  +RP++I+V+S H    +    +   +  
Sbjct: 4   IIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETF 63

Query: 65  DVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESG-FNHVNEDTKRGLDHGAWVPLM 123
           +                Y   G P+LA  + + L +      VNE    GLDHG  VPL 
Sbjct: 64  ETADSGQWGRR----PVYDVKGDPDLAWEIAEELIKEIPVTIVNE--MDGLDHGTLVPLS 117

Query: 124 LMYPE-ANIPVCQLSVQ-TRKDGTHHYNMGKALAPL---KDEGVLIIGSGSATHNLRALQ 178
            ++ +  +  V  LSV          +  GKA+       D  V ++ SG  +H L+  +
Sbjct: 118 YIFGDPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVEPSDLRVHVVASGDLSHQLQGDR 177

Query: 179 FDGDSVAS-WASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAA 237
               S     A EFD ++ D L +    +  +  Q       ++  P  F+PL + +GA 
Sbjct: 178 PSSQSGYYPIAEEFDKYVIDNLEELDPVEFKNMHQY---LTISNATPCGFHPLLILLGAL 234

Query: 238 GEN 240
              
Sbjct: 235 DGK 237

Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class III enzymes. Enzymes belonging to this family include Protocatechuate 4,5-dioxygenase (LigAB), 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarB), 4,5-DOPA Dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase, and 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD). There are also some family members that do not show the typical dioxygenase activity. Length = 260

>gnl|CDD|153374 cd07362, HPCD_like, Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 32/189 (16%)

Query: 40  RPNSILVISGHWET-------DVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAK 92
           +P+ ILVIS HW +       D    +         D       +  + Y  PG PEL +
Sbjct: 43  KPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDL------ISDVPYDYPGDPELGR 96

Query: 93  RVKQLLTESGFN--HVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSV--------QTRK 142
            + +   E+G     VN+ T    D+G  VPL  + P  +IPV  +S         ++  
Sbjct: 97  LLVEEGQEAGLRVKAVNDPTYI-WDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYT 155

Query: 143 DGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEF----DNWLKDA 198
            G     +GKAL    D+ V+ + SGS +HNL       + +  + S      D      
Sbjct: 156 WGEV---IGKALLE-SDKRVVFLASGSLSHNLVRGPEAEEGMNHYPSLAEQQMDRRFIQL 211

Query: 199 LLQGRYEDV 207
           L +G++++ 
Sbjct: 212 LREGQFQEA 220

This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetramer composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and both belong to this family. Like all Class III extradiol dioxygenases, these enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Length = 272

>gnl|CDD|153379 cd07367, CarBb, CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 16/138 (11%)

Query: 81  KYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT 140
           +   PG  E A+   +   E GF+    +  R  DHG  VPL+ M P+ +IPV  L V  
Sbjct: 83  RELFPGHREFARAFVRQAAEDGFDLAQAEELR-PDHGVMVPLLFMGPKLDIPVVPLIVNI 141

Query: 141 RKD----GTHHYNMGKALAPL------KDEGVLIIGSGSATHNLRALQFDGDSVASWASE 190
             D        + +GK LA          E V +I +G  +H L  +   G+        
Sbjct: 142 NTDPAPSPRRCWALGKVLAQYVEKRRPAGERVAVIAAGGLSHWL-GVPRHGEV----NEA 196

Query: 191 FDNWLKDALLQGRYEDVN 208
           FD    D L  G  E + 
Sbjct: 197 FDRMFLDLLEGGNGERLA 214

CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl. Length = 268

>gnl|CDD|153372 cd07359, PCA_45_Doxase_B_like, Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 37/192 (19%)

Query: 40  RPNSILVIS-----GHWETDVPTVNVVQQNDVIYDFYNFPEQMYK--LKYPAPGAPELAK 92
           RP+ ++V+        +  ++P   +      I D Y  P++ +    + P PG  +LA+
Sbjct: 44  RPDVVVVVGNDHFTNFFLDNMPAFAIG-----IADSYEGPDEGWLGIPRAPVPGDADLAR 98

Query: 93  RVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPV------CQLSVQTRKDGTH 146
            +   L E GF+       R LDHG  VPL  + P+ ++PV      C            
Sbjct: 99  HLLAGLVEDGFDVAFSYELR-LDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLP--SLRR 155

Query: 147 HYNMGKALAP-----LKDEGVLIIGSGSATHNL---RALQFDGDSVASWASEFDNWLKDA 198
            Y +G+AL         D  V ++G+G  +H     R  + +         EFD    D 
Sbjct: 156 CYALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGPRHGEIN--------EEFDREFLDL 207

Query: 199 LLQGRYEDVNHY 210
           L +G  E +   
Sbjct: 208 LERGDLEALLKA 219

This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B. Length = 271

>gnl|CDD|153388 cd07951, ED_3B_N_AMMECR1, The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 30/182 (16%)

Query: 29  LKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIY-DFYNF--PEQMYKLKYPAP 85
            +A   ++   RP++I+V+S H          +     +  DF  F  PE  + +     
Sbjct: 27  CEAAARRLAAARPDTIVVVSPH-APVFRDAFAISTGGTLRGDFSRFGAPEVSFGVDLDLE 85

Query: 86  GAPELAKRVKQLLTESGFNHVNEDTK-RGLDHGAWVPLMLM---YPEANIPVCQLSVQTR 141
              E+A        + G        +   LDHG  VPL  +     +  +    LS  + 
Sbjct: 86  LVEEIAGEAD----KEGLPVGALGERIPELDHGTLVPLYFLRKAGSDGKLVRIGLSGLSP 141

Query: 142 KDGTHHYNMGKALA----PLKDEGVLIIGSGSATHNL----------RALQFDGDSVASW 187
           ++    Y  G+ALA     L     L I SG  +H L          R  +FD     + 
Sbjct: 142 EE---LYAFGRALAAAAEELGRRVAL-IASGDLSHRLTEDAPGGYDPRGPEFDAAIAEAL 197

Query: 188 AS 189
           A 
Sbjct: 198 AK 199

This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome. Length = 256

>gnl|CDD|153376 cd07364, PCA_45_Dioxygenase_B, Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 25/134 (18%)

Query: 83  PAP---GAPELAKRVKQLLTESGFNH--VNEDTKRGLDHGAWVPLMLMYPEAN------I 131
           P P   G P+LA  + Q L    F+   VNE     +DHG  VPL +MY +        I
Sbjct: 90  PVPDVQGHPDLAWHIAQSLILDDFDMTIVNEMD---VDHGLTVPLSIMYGQPEAWPCKVI 146

Query: 132 PVCQLSVQ-TRKDGTHHYNMGKAL-----APLKDEGVLIIGSGSATHNLRALQFDGDSVA 185
           P+C   VQ  +  G   + +GKA+     +  +D  V I G+G  +H     Q  G+   
Sbjct: 147 PLCVNVVQYPQPTGKRCFALGKAIRRAVESYDEDLKVAIWGTGGMSH-----QLQGERAG 201

Query: 186 SWASEFDNWLKDAL 199
               EFDN   D L
Sbjct: 202 LINKEFDNRFLDKL 215

Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB. Length = 277

>gnl|CDD|184003 PRK13364, PRK13364, protocatechuate 4,5-dioxygenase subunit beta; Provisional

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 17/129 (13%)

Query: 83  PAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN-----IPVCQLS 137
           P  G  EL+  + + L E  F+         +DH   +PL L +P  +     +PVC  +
Sbjct: 93  PFKGDTELSWHIIESLVEEEFDITTCQEML-VDHAFTLPLELFWPGRDYPVKVVPVCINT 151

Query: 138 VQTRKDGTHH-YNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEF 191
           VQ         Y +G+A+         DE V++IG+G  +H     Q DG+       +F
Sbjct: 152 VQHPLPSARRCYKLGQAIGRAIASWPSDERVVVIGTGGLSH-----QLDGERAGFINKDF 206

Query: 192 DNWLKDALL 200
           D    D+L+
Sbjct: 207 DLQCMDSLV 215

Length = 278

>gnl|CDD|153386 cd07949, PCA_45_Doxase_B_like_1, The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 17/128 (13%)

Query: 83  PAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN-----IPVCQLS 137
           P  G PEL+  + + L E  F+ +    +  +DH   +P+ L +P A      +PV   +
Sbjct: 93  PFKGDPELSWHLIESLVEDEFD-ITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINT 151

Query: 138 VQTRKDGTHH-YNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEF 191
           VQ         + +G+A+        +D  V+++G+G  +H     Q DG+       +F
Sbjct: 152 VQHPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLGTGGLSH-----QLDGERAGFINKDF 206

Query: 192 DNWLKDAL 199
           D +  D +
Sbjct: 207 DRYCLDKM 214

This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B. Length = 276

>gnl|CDD|153382 cd07370, HPCD, The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 5/137 (3%)

Query: 41  PNSILVISGHWETDVP-TVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLT 99
            ++I+V   HW  +    +N   +   ++     P  +  + Y   G PELA  + +  T
Sbjct: 46  VDTIVVFDTHWLVNAGYHINANARFSGLFTSNELPHFIADMPYDYAGDPELAHLIAEEAT 105

Query: 100 ESG-FNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPL- 157
           E G     +ED    L++G  VP+  M  + +  V  ++V    D      +G+A+    
Sbjct: 106 EHGVKTLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCTHDIEESRRLGEAIRRAI 165

Query: 158 --KDEGVLIIGSGSATH 172
              D  V ++ SGS +H
Sbjct: 166 AASDRRVALLASGSLSH 182

3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Length = 280

>gnl|CDD|106330 PRK13372, pcmA, protocatechuate 4,5-dioxygenase; Provisional

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 19/131 (14%)

Query: 83  PAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMY--PEA-NIPVCQLSVQ 139
              G PELA  + Q + +  F+ +    +  +DHG  VPL LM   PEA   PV   +V 
Sbjct: 240 DVIGHPELAAHIAQSVIQDDFD-LTIVNEMDVDHGLTVPLSLMCGDPEAWPCPVIPFAVN 298

Query: 140 TRK----DGTHHYNMGKALAPLKDE------GVLIIGSGSATHNLRALQFDGDSVASWAS 189
             +     G   Y +G+A+    D+       V I G+G  +H     Q  G        
Sbjct: 299 VVQYPVPSGRRCYELGQAIRRAIDKWDADPLNVQIWGTGGMSH-----QLQGPRAGLINE 353

Query: 190 EFDNWLKDALL 200
           EFDN   D L+
Sbjct: 354 EFDNAFLDHLI 364

Length = 444

>gnl|CDD|183997 PRK13358, PRK13358, protocatechuate 4,5-dioxygenase subunit beta; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 83  PAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRK 142
             PG    A+ +       GF+    +  R  DHG  +PL+ M P   IPV  + V    
Sbjct: 85  LVPGHRAFAQAIALHRAADGFDLAQAEELR-PDHGVMIPLLFMDPGRRIPVVPVYVNINT 143

Query: 143 D----GTHHYNMGKALAPL------KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFD 192
           D          +G+ +          DE V +IG+G  +H L   +    +      +FD
Sbjct: 144 DPFPSAKRCAALGEVIRQAVEKDRPADERVAVIGTGGLSHWLGVPEHGEVN-----EDFD 198

Query: 193 NWLKDALLQGRYEDVNHYEQKA 214
             + DAL+ G  E +     + 
Sbjct: 199 RMVMDALVSGDLEALVALGNEE 220

Length = 269

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
PRK10628	246	LigB family dioxygenase; Provisional	100.0
cd07363	253	45_DOPA_Dioxygenase The Class III extradiol dioxyg	100.0
COG3384	268	Aromatic ring-opening dioxygenase, catalytic LigB	100.0
PF02900	272	LigB: Catalytic LigB subunit of aromatic ring-open	100.0
TIGR02298	282	HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase	100.0
cd07373	271	2A5CPDO_A The alpha subunit of the Class III extra	100.0
cd07370	280	HPCD The Class III extradiol dioxygenase, homoprot	100.0
cd07362	272	HPCD_like Class III extradiol dioxygenases with si	100.0
cd07371	268	2A5CPDO_AB The alpha and beta subunits of the Clas	100.0
cd07320	260	Extradiol_Dioxygenase_3B_like Subunit B of Class I	100.0
cd07952	256	ED_3B_like Uncharacterized class III extradiol dio	100.0
cd07367	268	CarBb CarBb is the B subunit of the Class III Extr	100.0
cd07364	277	PCA_45_Dioxygenase_B Subunit B of the Class III ex	100.0
cd07949	276	PCA_45_Doxase_B_like_1 The B subunit of unknown Cl	100.0
PRK13366	284	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
PRK13372	444	pcmA protocatechuate 4,5-dioxygenase; Provisional	100.0
cd07359	271	PCA_45_Doxase_B_like Subunit B of the Class III Ex	100.0
cd07368	277	PhnC_Bs_like PhnC is a Class III Extradiol ring-cl	100.0
cd07372	294	2A5CPDO_B The beta subunit of the Class III extrad	100.0
PRK13364	278	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
PRK03881	467	hypothetical protein; Provisional	100.0
PRK13358	269	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
cd07369	329	PydA_Rs_like PydA is a Class III Extradiol ring-cl	100.0
PRK13367	420	protocatechuate 4,5-dioxygenase; Provisional	100.0
cd07950	277	Gallate_Doxase_N The N-terminal domain of the Clas	100.0
cd07951	256	ED_3B_N_AMMECR1 The N-terminal domain, an extradio	100.0
PRK13365	279	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
PRK13363	335	protocatechuate 4,5-dioxygenase subunit beta; Prov	100.0
PRK13370	313	mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase	100.0
cd07366	328	3MGA_Dioxygenase Subunit B of the Class III Extrad	100.0
cd07365	310	MhpB_like Subunit B of the Class III Extradiol rin	100.0
PRK13373	344	putative dioxygenase; Provisional	100.0
COG3885	261	Uncharacterized conserved protein [Function unknow	99.92
cd07361	266	MEMO_like Memo (mediator of ErbB2-driven cell moti	99.88
PRK00782	267	hypothetical protein; Provisional	99.78
COG1355	279	Predicted dioxygenase [General function prediction	99.1
PF01875	276	Memo: Memo-like protein; InterPro: IPR002737 This	98.96
KOG3086	296	consensus Predicted dioxygenase [General function	96.27
PRK09271	160	flavodoxin; Provisional	86.43
TIGR02017	263	hutG_amidohyd N-formylglutamate amidohydrolase. In	82.62
PRK05723	151	flavodoxin; Provisional	81.0

>PRK10628 LigB family dioxygenase; Provisional

Probab=100.00  E-value=3.1e-69  Score=471.69  Aligned_cols=238  Identities=32%  Similarity=0.613  Sum_probs=217.1

Q ss_pred             CCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHh
Q 024528           21 ESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTE  100 (266)
Q Consensus        21 ~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~  100 (266)
                      +++++.++|+++++++  .+|++|||||+||++..+.|+.+++++++|||||||+++|+++|++||+|+||++|++.|++
T Consensus         5 e~~~~~~~l~~lg~~l--~~PkaIlvvSAHW~t~~~~v~~~~~p~~i~DF~GFP~elY~~~Ypa~G~p~LA~~i~~ll~~   82 (246)
T PRK10628          5 EDNLYTRAWRTLGETL--PRPKAIVVVSAHWYTRGTGVTAMETPRTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAP   82 (246)
T ss_pred             cccHHHHHHHHHHHhC--CCCCEEEEEcCCcCCCCCcEEecCCCCcccCCCCCCHHHeeecCCCCCCHHHHHHHHHHhhh
Confidence            3467889999999986  58999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCeEEEEecCCccccccccCC
Q 024528          101 SGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFD  180 (266)
Q Consensus       101 ~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~iiaSG~lSH~l~~~~~~  180 (266)
                      .|+.  ..+.+||+|||+||||++|||++||||||||++...+++.||+||++|++|||++|+|||||+++|||+...+.
T Consensus        83 ~~~~--~~~~~rGlDHG~WvpL~~m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvLIigSG~~~HNL~~~~~~  160 (246)
T PRK10628         83 VPVT--LDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWH  160 (246)
T ss_pred             cCcc--cCCcccCcccchhhhhhhhCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEEEEecCccccchhhhccc
Confidence            8872  23345999999999999999999999999999999999999999999999999999999999999999876542


Q ss_pred             -CCCcchhHHHHHHHHHHHHHcC-C--HhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCCCCceEEecceeeeceee
Q 024528          181 -GDSVASWASEFDNWLKDALLQG-R--YEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTSWQLGTIS  256 (266)
Q Consensus       181 -~~~~~~~~~eFD~~v~~~l~~g-d--~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~~~~~~~~~~~~~~~~~  256 (266)
                       +....+|+.+||+|+.++|+++ |  .++|+++.+ .|+++.+||++|||+||++++||++++.+.+.+|++|.+|++|
T Consensus       161 ~~~~~~~wa~~F~~wl~~~l~~~~~~r~~~L~~~~~-~p~a~~ahPt~EH~lPL~~alGAa~~~~~~~~~~~~~~~gsls  239 (246)
T PRK10628        161 GDSSPYPWAESFNQFVKANLTWQGPVEQHPLVNYLQ-HEGGALSNPTPEHYLPLLYVLGAWDGKEPISIPVDGIEMGSLS  239 (246)
T ss_pred             CCCCCchHHHHHHHHHHHHHhcCccchHHHHHHHHh-CcChhhcCCChHHHHHHHHHhcCCCCCCCceeeecccccccce
Confidence             2235589999999999999943 5  999999965 5999999999999999999999987766778999999999999


Q ss_pred             eeEEEEc
Q 024528          257 YSSYKFT  263 (266)
Q Consensus       257 ~~~~~~~  263 (266)
                      |+||+|+
T Consensus       240 m~s~~f~  246 (246)
T PRK10628        240 MLSVQVG  246 (246)
T ss_pred             eEEEEeC
Confidence            9999996

>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine

Probab=100.00  E-value=5.9e-69  Score=476.53  Aligned_cols=252  Identities=54%  Similarity=0.977  Sum_probs=233.5

Q ss_pred             eEEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCCC
Q 024528            6 NTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAP   85 (266)
Q Consensus         6 ~~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~   85 (266)
                      |++|+|||+|++.+.+ +...++++++++++.  +||+||||||||++....|+++++++++|||+|||+++|+++|+++
T Consensus         1 p~~fi~HG~p~~~~~~-~~~~~~l~~~~~~l~--~p~~IiviSaHw~~~~~~i~~~~~~~~~~df~gfp~~~y~~~y~~~   77 (253)
T cd07363           1 PVLFISHGSPMLALED-NPATAFLRELGKELP--KPKAILVISAHWETRGPTVTASARPETIYDFYGFPPELYEIQYPAP   77 (253)
T ss_pred             CeEEeCCCCcccccCC-ChHHHHHHHHHHhcC--CCCEEEEEcCCcccCCCeEEecCCCCceeCCCCCCHHHeeccCCCC
Confidence            7899999999998755 344489999999986  9999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCeEEE
Q 024528           86 GAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLII  165 (266)
Q Consensus        86 g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~ii  165 (266)
                      ||++||++|++.++++||| ++...++++|||+||||++|+|+.++||||||+|...++++||+||++|+++|++||+||
T Consensus        78 g~~eLa~~i~~~l~~~gi~-~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~~~~v~ii  156 (253)
T cd07363          78 GSPELAERVAELLKAAGIP-ARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPASLDPAEHYALGRALAPLRDEGVLII  156 (253)
T ss_pred             CCHHHHHHHHHHHHhcCCC-ccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhhhCCEEEE
Confidence            9999999999999999996 777788999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCccccccccCCC-CCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCCCCceE
Q 024528          166 GSGSATHNLRALQFDG-DSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAE  244 (266)
Q Consensus       166 aSG~lSH~l~~~~~~~-~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~~~~~  244 (266)
                      |||++||||...+++. .++.+|+++||+|++++|+++|.++++......|.++.+||++|||+||++++||+++.. ++
T Consensus       157 ~SG~lsH~l~~~~~~~~~~~~~~~~~Fd~~i~~~l~~~d~~~l~~~~~~~~~~~~ahp~~~h~~pll~~lGa~~~~~-~~  235 (253)
T cd07363         157 GSGSSVHNLRALRWGGPAPPPPWALEFDDWLKDALTAGDLDALLDYWEKAPHARRAHPTEEHLLPLLVALGAAGGDE-AR  235 (253)
T ss_pred             ecCcceechhhhccccCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHhCccHHHcCCChHHHHHHHHHhcCCCCCC-cE
Confidence            9999999999887642 357799999999999999999999977554558999999999999999999999997654 88


Q ss_pred             EecceeeeceeeeeEEEE
Q 024528          245 LIHTSWQLGTISYSSYKF  262 (266)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~  262 (266)
                      .++++|.++++||+||+|
T Consensus       236 ~~~~~~~~~~~~~~s~~~  253 (253)
T cd07363         236 RLHDSIEYGSLSMSSYRF  253 (253)
T ss_pred             EeecceecccceEEEEEC
Confidence            899999999999999997

This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca

>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]

Probab=100.00  E-value=8.7e-69  Score=465.41  Aligned_cols=259  Identities=39%  Similarity=0.759  Sum_probs=242.9

Q ss_pred             CcceEEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC-CeEEeccCCCcccCCCCCcccccccc
Q 024528            3 TVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDV-PTVNVVQQNDVIYDFYNFPEQMYKLK   81 (266)
Q Consensus         3 ~~~~~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~-~~i~~~~~~~~~~Df~gfp~~~y~~~   81 (266)
                      .++|++|+|||+|++.+++ +++.++++++++++.+.+||+|||+||||++++ ..|++.++++++|||||||+++|+++
T Consensus         7 ~~~p~LflshgsP~~~~~~-n~~~~~l~~lG~~~~e~rp~tIiV~SaHw~t~~~~~v~~~e~~~~i~DfygFP~~ly~~~   85 (268)
T COG3384           7 TMMPALFLSHGSPMLALED-NAATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVTASEHPETIHDFYGFPDELYDVK   85 (268)
T ss_pred             hhccceeecCCCcccccCc-cHHHHHHHHHHHhhhhcCCCEEEEEeceEEecCceeEEcccCcceeeccCCCCHHHHhcc
Confidence            4689999999999998854 788899999999999999999999999999988 88999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCC
Q 024528           82 YPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEG  161 (266)
Q Consensus        82 y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~  161 (266)
                      |+++|+||||++|++.+.+.|++ . ...+||+|||+||||++|||++||||||||+++.++++.+|++|++||++|+|.
T Consensus        86 Y~a~G~peLa~~i~~~l~~~~v~-a-~~~~~gLDHGtwvpL~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree~  163 (268)
T COG3384          86 YPAPGSPELAQRIVELLAKLGVP-A-DAPSWGLDHGTWVPLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEG  163 (268)
T ss_pred             CCCCCCHHHHHHHHHHhcccCcc-c-cCCccCCCccceeeehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999994 3 337899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHH--cCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCC
Q 024528          162 VLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALL--QGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGE  239 (266)
Q Consensus       162 v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~--~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~  239 (266)
                      |+|||||+++|||+...+.+....+|+++||+|+++.|.  +||.+.++++.+..|++..++|+++|++|+++++|+.++
T Consensus       164 vlilaSGs~~H~l~~~~~~~~~~~~~a~~F~~~~~~~v~~~~~d~~~~~~~~~~~p~~~~~~~~~eH~~pL~~~lG~~~~  243 (268)
T COG3384         164 VLILASGSLVHNLRLLKWAGDGPYPWAREFDEWMKKNVVLWGGDFAPLCNYLPLYPDALIAEPGEEHLLPLLYALGAWDG  243 (268)
T ss_pred             EEEEecCcceeehhhhhhcCCCCChhHHHHHHHHHHHHHHhccchHHHhHhhhhchHhhhCCCCccchHHHHHHhhccCC
Confidence            999999999999999988655567999999999999996  459999999987799999999999999999999999998


Q ss_pred             CCceEEecceeeeceeeeeEEEEcc
Q 024528          240 NANAELIHTSWQLGTISYSSYKFTA  264 (266)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~  264 (266)
                      +.+++++-+.+..+++||.+.+|..
T Consensus       244 ~~~~ei~~d~~~~~s~sm~~~~F~~  268 (268)
T COG3384         244 DEKVEIVTDLFESGSLSMLNAQFPE  268 (268)
T ss_pred             CCCeeEEecccccccceeEEEecCC
Confidence            8999999999999999999999963

>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms

Probab=100.00  E-value=3.9e-60  Score=424.14  Aligned_cols=251  Identities=41%  Similarity=0.770  Sum_probs=198.0

Q ss_pred             eEEEEcCCCCCCCCCCC------chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CC--eEEeccCCCcccCCCC
Q 024528            6 NTFFISHGSPTLSIDES------LPARHFLKAWKEQVFTQRPNSILVISGHWETD-----VP--TVNVVQQNDVIYDFYN   72 (266)
Q Consensus         6 ~~~fisHg~P~~~~~~~------~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-----~~--~i~~~~~~~~~~Df~g   72 (266)
                      |++|+|||.|++...+.      .++.++++++++++++.+||+||||||||+++     .+  .|..++.++.+|||+|
T Consensus         1 p~~~~sHgp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~g   80 (272)
T PF02900_consen    1 PAYFISHGPPMLPLEDPEPEGKWQRTFAALQELGRRLREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYG   80 (272)
T ss_dssp             -EEEEE--HHHHHCCH-CCCCCCHHHHHHHHHHHHHCHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS---
T ss_pred             CEEEEeCCCccccccCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCccccccccc
Confidence            79999999444443221      25678999999999999999999999999982     22  4666777899999999


Q ss_pred             CccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC----CCChHHHH
Q 024528           73 FPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT----RKDGTHHY  148 (266)
Q Consensus        73 fp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~----~~~~~~~~  148 (266)
                      ||++.|+++|+++||++||++|++.+.++||| ++.+.++++|||+||||+||+|+.++||||||+|+    ..++++||
T Consensus        81 fp~~~~~~~~~~~g~~~la~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p~~~~~~~~  159 (272)
T PF02900_consen   81 FPPELYEIKYPAPGDPELAERIAEHLRKAGFD-VAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPPSPSPERHY  159 (272)
T ss_dssp             --SSSBSSS--EEB-HHHHHHHHHHHHHTTS--EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS-TS-HHHHH
T ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHhcCCC-EEeccCcCCccccceeeeecccccCcceeeeEeecccccCCCHHHHH
Confidence            99999999999999999999999999999996 77789999999999999999999999999999998    78999999


Q ss_pred             HHHHHhcccc---CCCeEEEEecCCccccccccCCCCCcc-hhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCc
Q 024528          149 NMGKALAPLK---DEGVLIIGSGSATHNLRALQFDGDSVA-SWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWP  224 (266)
Q Consensus       149 ~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~~~~~~~~-~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~  224 (266)
                      +||++|++++   ++||+|||||++||||...++++  .. +++.+||+|++++|++||.++|+++..+.+....+|| +
T Consensus       160 ~lG~aL~~~~~~~~~rv~vi~SG~lsH~l~~~~~~~--~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~~~~~~~~~~-~  236 (272)
T PF02900_consen  160 RLGRALRKARESSDERVAVIASGGLSHNLRDPRPGG--YDPPWAEEFDEWILDALESGDLEALLDLDDEEPEAAAAHP-E  236 (272)
T ss_dssp             HHHHHHHHHHHTSGGCEEEEEEE-SS--TTSTTTTS-----CHHHHHHHHHHCCCCH-HHHTCTTGGHCCHCHHHHGC-C
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCCcccCCCcccccc--hhhHhHHHHHHHHHHHHHcCChHHHhhcChhhHHHHhCCC-h
Confidence            9999999998   89999999999999999998753  33 5999999999999999999999999776788888999 9


Q ss_pred             CcHHHHHHHHccCCCCCceEEecceeeeceeeeeEEEEc
Q 024528          225 DHFYPLHVAMGAAGENANAELIHTSWQLGTISYSSYKFT  263 (266)
Q Consensus       225 ~h~~pl~~~lGa~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (266)
                      |||+||++++||+++   .+..++.+.++++++.+|.||
T Consensus       237 ~~~~~~~~~~GA~~~---~~~~~~~~~y~~~~~~~~~~g  272 (272)
T PF02900_consen  237 EHFRPWLVAAGAAGG---AEIKAEVLSYEPPFGWGYGFG  272 (272)
T ss_dssp             CCCHHHHHHHHTS-S---ECSCEEEEECCCEEETTEEE-
T ss_pred             hHHHHHHHHHHhcCC---CccceeeEEEeCcceeEEEeC
Confidence            999999999999976   445566788999999999986

Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.

>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=100.00  E-value=3.2e-55  Score=393.73  Aligned_cols=243  Identities=21%  Similarity=0.262  Sum_probs=211.2

Q ss_pred             CCCcceEEEEcCCCCCCCCCCC--------chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCeEEeccCCCcccCCC
Q 024528            1 MSTVKNTFFISHGSPTLSIDES--------LPARHFLKAWKEQVFTQRPNSILVISGHWETD-VPTVNVVQQNDVIYDFY   71 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~~~~--------~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-~~~i~~~~~~~~~~Df~   71 (266)
                      |++|+.++++||. |++.+++.        .++.++++++++++++.+||+||||||||.++ ...|+..++++++|||+
T Consensus         1 Mg~iv~a~~~~H~-P~i~i~e~~g~~~~~~~~~~~al~~l~~~l~~~~Pd~IVViS~H~~~~~~~~i~~~~~~~g~~~~~   79 (282)
T TIGR02298         1 MGKLALAAKITHV-PSMYLSELPGPLRGCRQGAIDGHKEISRRAKEMGVDTIVVFDTHWLVNSGYHINCNDQFSGSYTSH   79 (282)
T ss_pred             CcceEEEEEeccC-CcEEECCCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEECCCCCcCCCeEEecCCCCcceecCC
Confidence            9999999999998 88766442        36779999999999999999999999999987 57888888899999999


Q ss_pred             CCccccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhccCCCCCeEEEEec-CCCChHHHH
Q 024528           72 NFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQ-TRKDGTHHY  148 (266)
Q Consensus        72 gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~-~~~~~~~~~  148 (266)
                      |||+++|+++|+++||++||++|++.++++||+ +.  .+.++++|||+||||+||+|+.++||||||+| ...+++++|
T Consensus        80 g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~~~~~~~~~  158 (282)
T TIGR02298        80 ELPHFIQDLRYDYPGNPALGQLIADEAQEHGVK-TLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCTVHDIEESR  158 (282)
T ss_pred             CCChhhhCceeeCCCCHHHHHHHHHHHHHCCCc-eeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCCCCCHHHHH
Confidence            999999999999999999999999999999995 65  46789999999999999999999999999998 557999999


Q ss_pred             HHHHHhccc---cCCCeEEEEecCCccccccccCC-CCCcchhHHH----HHHHHHHHHHcCCHhHHhcchhcCchhhhc
Q 024528          149 NMGKALAPL---KDEGVLIIGSGSATHNLRALQFD-GDSVASWASE----FDNWLKDALLQGRYEDVNHYEQKAPCAKKA  220 (266)
Q Consensus       149 ~lG~aL~~~---~d~~v~iiaSG~lSH~l~~~~~~-~~~~~~~~~e----FD~~v~~~l~~gd~~~l~~~~~~~p~~~~a  220 (266)
                      +||++|+++   +++||+|||||++||||...... +.++.+|+.+    ||+++++++++||.++|+++.   |.+...
T Consensus       159 ~lG~al~~~i~~~~~rV~iIaSG~lSH~L~~~~~~~p~g~~~~a~~f~~~~D~~v~~~l~~gd~~~l~~~~---~~~~~~  235 (282)
T TIGR02298       159 ALGEAIRKAIEQSDGRVAVLASGSLSHRFWDNKDLAPEGMTTIASEFNRQVDLRVLELWRERDYREFCAML---PDYAVK  235 (282)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecccceecCcccCCCcccCCchhhHHHHHHHHHHHHHHHcCCHHHHHHhC---HHHHHh
Confidence            999999999   78999999999999999876411 2245678666    488899999999999999983   333444


Q ss_pred             CCCcCcHHHHHHHHccCCC---CCceEEecc
Q 024528          221 HPWPDHFYPLHVAMGAAGE---NANAELIHT  248 (266)
Q Consensus       221 ~p~~~h~~pl~~~lGa~~~---~~~~~~~~~  248 (266)
                      .+++|+++++++++||.+.   ..++++++.
T Consensus       236 ~age~g~~~~~~l~Gal~~~~~~~~~~~l~~  266 (282)
T TIGR02298       236 CNGEGGMHDTVMLFGALGWDDYDGEVEVITE  266 (282)
T ss_pred             cCcccChHHHHHHHhccCCCCccccceEecc
Confidence            4789999999999999952   345677765

This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.

>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=100.00  E-value=5.3e-55  Score=390.72  Aligned_cols=239  Identities=19%  Similarity=0.233  Sum_probs=201.5

Q ss_pred             CcceEEEEcCCCCCCCCCCC----chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CeEEec-----cCCCcccCCC
Q 024528            3 TVKNTFFISHGSPTLSIDES----LPARHFLKAWKEQVFTQRPNSILVISGHWETDV--PTVNVV-----QQNDVIYDFY   71 (266)
Q Consensus         3 ~~~~~~fisHg~P~~~~~~~----~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~--~~i~~~-----~~~~~~~Df~   71 (266)
                      .++ ++|++||+|++.+.+.    .++.++++++++++++.+||+||||||||+++.  ..|+..     ..++.+|||+
T Consensus         2 ~iv-~~f~~hh~P~~~~~~~~~~~~~~~~a~~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~   80 (271)
T cd07373           2 TIV-SAFLVPGSPLPQLRPDVPSWGQFAAATRQAGKALAASRPDVVLVYSTQWFAVLDQQWLTRPRSEGVHVDENWHEFG   80 (271)
T ss_pred             ceE-EEEecCCCCccccCCCcccHHHHHHHHHHHHHHHHHhCCCEEEEECCCCcccccceeEeeccccccccccChhHhc
Confidence            445 4689999787666443    268899999999998889999999999999844  445431     2356789999


Q ss_pred             CCccccccccCCCCCCHHHHHHHHHHHHhCCCCccc-ccCC-CCccccchhhhhhh-ccCCCCCeEEEEecCCCChHHHH
Q 024528           72 NFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVN-EDTK-RGLDHGAWVPLMLM-YPEANIPVCQLSVQTRKDGTHHY  148 (266)
Q Consensus        72 gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~-~~~~-~~lDHG~~vPL~~l-~p~~~iPvV~vs~~~~~~~~~~~  148 (266)
                      |||.       +++|+++||++|++.++++||+ +. .+.+ +++|||+||||+|| +|+.++||||+|+|..+++++||
T Consensus        81 g~p~-------~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~~~~~~~~~  152 (271)
T cd07373          81 ELPY-------DIRSDTALAEACVTACPEHGVH-ARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNLYHSGEITE  152 (271)
T ss_pred             Cccc-------ccCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCCCCCHHHHH
Confidence            9884       7999999999999999999995 65 5554 59999999999999 77899999999999889999999


Q ss_pred             HHHHHhcc-ccC--CCeEEEEecCCccccccccC--C-CCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCC
Q 024528          149 NMGKALAP-LKD--EGVLIIGSGSATHNLRALQF--D-GDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHP  222 (266)
Q Consensus       149 ~lG~aL~~-~~d--~~v~iiaSG~lSH~l~~~~~--~-~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p  222 (266)
                      +||++|++ +++  +||+|||||+|||||...++  . +.++++|+.+||+|+++++++||.++|+++   .|.+..+||
T Consensus       153 ~lG~al~~~l~~~~~rV~iIgSG~lSH~L~~~~~~~~~~~~~~p~~~~FD~~~~~~l~~gd~~~ll~~---~~~~~~~~~  229 (271)
T cd07373         153 KLGAIAADAAKDQNKRVAVVGVGGLSGSLFREEIDPREDHIANEEDDKWNRRVLKLIEAGDLPALREA---MPVYAKAAR  229 (271)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEecccccCcCcCCCcCCCCCccCccHHHHHHHHHHHHHcCCHHHHHhc---CHHHHHHhc
Confidence            99999996 665  99999999999999976542  1 224789999999999999999999999976   678899999


Q ss_pred             CcCcHHHHHHHHccCCCCCc-eEEecceeeec
Q 024528          223 WPDHFYPLHVAMGAAGENAN-AELIHTSWQLG  253 (266)
Q Consensus       223 ~~~h~~pl~~~lGa~~~~~~-~~~~~~~~~~~  253 (266)
                      ++|||+|+++++||+++... +++++.++.+|
T Consensus       230 ~~~g~~pl~~~~Ga~~~~~~~~~~l~ye~~~G  261 (271)
T cd07373         230 VDMGFKHLHWILGALGGKFSGANVLGYGPSYG  261 (271)
T ss_pred             ccCChHHHHHHHHhcCCCccCcceeeccCCcc
Confidence            99999999999999987654 77888776655

2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.

>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

Probab=100.00  E-value=1.4e-51  Score=370.45  Aligned_cols=256  Identities=20%  Similarity=0.248  Sum_probs=213.8

Q ss_pred             CcceEEEEcCCCCCCCCCC--------CchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCeEEeccCCCcccCCCCC
Q 024528            3 TVKNTFFISHGSPTLSIDE--------SLPARHFLKAWKEQVFTQRPNSILVISGHWETD-VPTVNVVQQNDVIYDFYNF   73 (266)
Q Consensus         3 ~~~~~~fisHg~P~~~~~~--------~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-~~~i~~~~~~~~~~Df~gf   73 (266)
                      +|+.++++||. |.+.+++        .+++.++++++++++.+.+||+||||||||++. ...|+..+++.++|||+||
T Consensus         1 ~iv~a~~~~H~-P~i~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pd~ivviS~H~~~~~~~~i~~~~~~~g~~~~~g~   79 (280)
T cd07370           1 KIVLAAKITHV-PTMMLSEQPGPNKGCRQAAIDGLKEIGRRARELGVDTIVVFDTHWLVNAGYHINANARFSGLFTSNEL   79 (280)
T ss_pred             CeEEEEecCCC-CeEEecCCCCCccchHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeEeccCCCCceecCCCC
Confidence            45667777774 4343322        135778999999999888999999999999885 5778888888899999999


Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHH
Q 024528           74 PEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMG  151 (266)
Q Consensus        74 p~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG  151 (266)
                      |.+.|+++|+++||++||++|++.+.+.|+| ++  .+.++++|||+||||++|+|+.++||||||+|...+++++++||
T Consensus        80 p~~~~~i~~~~~gd~ela~~i~~~~~~~g~~-~~~~~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~~~~~~~~~~lG  158 (280)
T cd07370          80 PHFIADMPYDYAGDPELAHLIAEEATEHGVK-TLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCTHDIEESRRLG  158 (280)
T ss_pred             CchhcCCCCCCCCCHHHHHHHHHHHHHCCCC-eeeecCCCCCCCeeHhhHHHHhCCCCCceEEEEeecCCCCHHHHHHHH
Confidence            9999999999999999999999999999996 44  56789999999999999999999999999999999999999999


Q ss_pred             HHhccc---cCCCeEEEEecCCccccccccCCCC------CcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCC
Q 024528          152 KALAPL---KDEGVLIIGSGSATHNLRALQFDGD------SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHP  222 (266)
Q Consensus       152 ~aL~~~---~d~~v~iiaSG~lSH~l~~~~~~~~------~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p  222 (266)
                      ++|+++   +++||+|||||++||++....+++.      ...+|+++||+|++++|+++|.++|+++.  .+....+++
T Consensus       159 ~al~~~~~~~~~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~~p~~~~fD~~~~~~i~~gD~~~L~~~~--~~~~~~~~g  236 (280)
T cd07370         159 EAIRRAIAASDRRVALLASGSLSHRFWPNRELEAHEDPFTISSPFNRQVDLRVLELWKEGRHAEFLDML--PDYARRCAG  236 (280)
T ss_pred             HHHHHHHHhcCCCEEEEEeccccccCccCCCccccccccccCChhHHHHHHHHHHHHHcCCHHHHHHhC--HHHHHHhCc
Confidence            999998   5679999999999999876655321      14589999999999999999999999983  245556777


Q ss_pred             C--cCcHHHHHHHHccCCCCCceEEecceeeeceeeeeEEEE
Q 024528          223 W--PDHFYPLHVAMGAAGENANAELIHTSWQLGTISYSSYKF  262 (266)
Q Consensus       223 ~--~~h~~pl~~~lGa~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (266)
                      +  .+||++++.++|+.+.+.+.++++.-..-++.+|..-.|
T Consensus       237 ~~g~~~~l~l~~alG~~~~~~~~~~~~~ye~~~g~g~~v~~~  278 (280)
T cd07370         237 EGGMHDTAMLFGALGWDDYDGKAEVVTEYFPSSGTGQVNVWF  278 (280)
T ss_pred             cCChHHHHHHHhhhCccccccceeEecccCCCCccceEEEEe
Confidence            6  889999999999887777778776433344556655444

3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.

>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate

Probab=100.00  E-value=1.3e-51  Score=368.76  Aligned_cols=234  Identities=22%  Similarity=0.291  Sum_probs=195.0

Q ss_pred             EEEEcCCCCCCCCCC-C----c----hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC-eEEeccCCCcccCCCCCccc
Q 024528            7 TFFISHGSPTLSIDE-S----L----PARHFLKAWKEQVFTQRPNSILVISGHWETDVP-TVNVVQQNDVIYDFYNFPEQ   76 (266)
Q Consensus         7 ~~fisHg~P~~~~~~-~----~----~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~-~i~~~~~~~~~~Df~gfp~~   76 (266)
                      ++++||.  |+++++ .    .    +|.++++++++++++.+||+||||||||++... .+.........+|++|||+.
T Consensus         3 a~~~pH~--P~i~~~~~~~~~~~~~~~t~~a~~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~   80 (272)
T cd07362           3 AMLAPHV--PSMCHEENPPENQGCLVGAIKGMKEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDL   80 (272)
T ss_pred             ccccCCC--CEeecCCCCCchhhhHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCch
Confidence            5789994  444433 1    1    367899999999988999999999999999863 33334443456899999999


Q ss_pred             cccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhccCCCCCeEEEEecC-CCChHHHHHHHHH
Q 024528           77 MYKLKYPAPGAPELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT-RKDGTHHYNMGKA  153 (266)
Q Consensus        77 ~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~-~~~~~~~~~lG~a  153 (266)
                      +|+++|+++||++||++|++.++++||+ ++  .+.++++|||+||||+||+|+.++||||||+|. .+++++||+||++
T Consensus        81 ~~~~~y~~~g~~~LA~~i~~~l~~~Gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~~~~~~~~~~lG~a  159 (272)
T cd07362          81 ISDVPYDYPGDPELGRLLVEEGQEAGLR-VKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTWGEV  159 (272)
T ss_pred             hhccccCCCCCHHHHHHHHHHHHHcCCc-eeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999996 65  345799999999999999999999999999998 6899999999966


Q ss_pred             hcccc---CCCeEEEEecCCccccccccCC--C-CCc-chhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCC-cC
Q 024528          154 LAPLK---DEGVLIIGSGSATHNLRALQFD--G-DSV-ASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPW-PD  225 (266)
Q Consensus       154 L~~~~---d~~v~iiaSG~lSH~l~~~~~~--~-~~~-~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~-~~  225 (266)
                      |+++.   ++||+|||||++||||....+.  + .++ .+|+++||+|+++++++||.++|+++..+    ....++ +|
T Consensus       160 i~~al~~~~~rv~ii~SG~lsH~l~~~~~~~~g~~~~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~----~~~~A~~e~  235 (272)
T cd07362         160 IGKALLESDKRVVFLASGSLSHNLVRGPEAEEGMNHYPSLAEQQMDRRFIQLLREGQFQEACNMLPQ----YARAAGVES  235 (272)
T ss_pred             HHHHHHhhCCCEEEEEeCcccccCCCCCCCcccccCCCChhHHHHHHHHHHHHHcCCHHHHHHhCHH----HHHHhcCCc
Confidence            65542   7999999999999999887662  1 233 57999999999999999999999999654    455666 99


Q ss_pred             cHHHHHHHHccCCCCCceEEec
Q 024528          226 HFYPLHVAMGAAGENANAELIH  247 (266)
Q Consensus       226 h~~pl~~~lGa~~~~~~~~~~~  247 (266)
                      +++++++++|++.+..+...++
T Consensus       236 g~~~~~~~~g~~~g~~~~~~v~  257 (272)
T cd07362         236 GGRHLTVMLGVMQGWGKVAELH  257 (272)
T ss_pred             ccHHHHHHHHHhcCCcccceec
Confidence            9999999999998765444444

This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame

>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=100.00  E-value=4.7e-50  Score=358.27  Aligned_cols=236  Identities=19%  Similarity=0.220  Sum_probs=188.0

Q ss_pred             EEEcCCCCCCCCCCC----chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecc-CCCcccCCCCCccccccccC
Q 024528            8 FFISHGSPTLSIDES----LPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQ-QNDVIYDFYNFPEQMYKLKY   82 (266)
Q Consensus         8 ~fisHg~P~~~~~~~----~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~-~~~~~~Df~gfp~~~y~~~y   82 (266)
                      .|++||+|.+.+.+.    ..+.++|+++++++++.+||+||||||||++..+.++++. ..+..++..+|+ ..|+++|
T Consensus         3 ~~l~~H~P~~~~~~~~~~~~~~~~al~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~y   81 (268)
T cd07371           3 AFLVPGPPLPQLGENVPQWEPRSWAYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENWP-EFGRLDY   81 (268)
T ss_pred             eEecCCCCcccCCCCCCcchHHHHHHHHHHHHHHHcCCCEEEEECCCCccccCcEEecccccceeecCcccc-hhceeee
Confidence            466676577765432    2567899999999988899999999999999886555533 345555567886 7789999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCcccc--cCCCCccccchhhhhhhccCCCCCeEEEEecCC-CChHHHHHHHHHhccc-c
Q 024528           83 PAPGAPELAKRVKQLLTESGFNHVNE--DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTR-KDGTHHYNMGKALAPL-K  158 (266)
Q Consensus        83 ~~~g~~eLa~~i~~~l~~~g~d~~~~--~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~-~~~~~~~~lG~aL~~~-~  158 (266)
                      +++||++||++|++.++++||+ ++.  +.++++|||+||||+||+|+.++||||+|+|.. +++++||+||++|+++ +
T Consensus        82 ~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~  160 (268)
T cd07371          82 SINVDVELAEACVEEGRKAGLV-TRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATR  160 (268)
T ss_pred             cCCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999995 664  688999999999999999999999999999876 8999999999999854 6


Q ss_pred             C--CCeEEEEecCCccccccccCCCC---CcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHH
Q 024528          159 D--EGVLIIGSGSATHNLRALQFDGD---SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVA  233 (266)
Q Consensus       159 d--~~v~iiaSG~lSH~l~~~~~~~~---~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~  233 (266)
                      +  +||+|||||++||||...+++..   ++.+++++||+++++.+++||.++|+++..+......++++.+|+++++.+
T Consensus       161 ~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~~~~gd~~~l~~~~~~~~~~a~~~~g~~~~~~l~ga  240 (268)
T cd07371         161 DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLELMEQGDMSALFELLPQYIKEARADMGSKAFTWMLGA  240 (268)
T ss_pred             HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhcccccHHHHHHHHHh
Confidence            5  89999999999999977665311   356999999999999999999999999854433333344455566665555


Q ss_pred             HccCCCCCceEEec
Q 024528          234 MGAAGENANAELIH  247 (266)
Q Consensus       234 lGa~~~~~~~~~~~  247 (266)
                      +|...  .++++++
T Consensus       241 l~~~~--~~~~v~~  252 (268)
T cd07371         241 MGYPE--LAAEVHG  252 (268)
T ss_pred             cCCcc--cCccEee
Confidence            55542  3455554

This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.

>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases

Probab=100.00  E-value=1.7e-48  Score=346.44  Aligned_cols=247  Identities=20%  Similarity=0.282  Sum_probs=207.9

Q ss_pred             EEEEcCCCCCCCCCCCc--hHHHHHHHHHHHhhcCCCCEEEEEeCCCCC--CCCeEEeccCCCcccCCCCCccccccccC
Q 024528            7 TFFISHGSPTLSIDESL--PARHFLKAWKEQVFTQRPNSILVISGHWET--DVPTVNVVQQNDVIYDFYNFPEQMYKLKY   82 (266)
Q Consensus         7 ~~fisHg~P~~~~~~~~--~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~--~~~~i~~~~~~~~~~Df~gfp~~~y~~~y   82 (266)
                      ++|+|||+|.+..++..  ...++++++++++++.+||+||||||||..  ....|+..+++++.|||    ...|++.|
T Consensus         2 ~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~   77 (260)
T cd07320           2 AIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSG----QWGRRPVY   77 (260)
T ss_pred             CCcccCCCcchhhcccccccCchHHHHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceecccccc----ccCCCCCc
Confidence            57999997766554322  222468889988877899999999999995  44566667778888997    44677788


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCcccccCC-CCccccchhhhhhhccC-CCCCeEEEEecCCC-ChHHHHHHHHHhcccc-
Q 024528           83 PAPGAPELAKRVKQLLTESGFNHVNEDTK-RGLDHGAWVPLMLMYPE-ANIPVCQLSVQTRK-DGTHHYNMGKALAPLK-  158 (266)
Q Consensus        83 ~~~g~~eLa~~i~~~l~~~g~d~~~~~~~-~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~~-~~~~~~~lG~aL~~~~-  158 (266)
                      ++++|++||++|++.+.+ |++ +....+ +++|||+||||.||+|+ .++|||||+++... ++++|++||++|++++ 
T Consensus        78 ~~~~d~ela~~l~~~~~~-~~~-~~~~~~~~~~DHg~~vpl~~l~~~~~~~piVpi~i~~~~~~~~~~~~lG~aL~~~~~  155 (260)
T cd07320          78 DVKGDPDLAWEIAEELIK-EIP-VTIVNEMDGLDHGTLVPLSYIFGDPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVE  155 (260)
T ss_pred             CCCCCHHHHHHHHHHHHh-cCC-EEEEcccccCCeeecccHHHHhCCCCCCcEEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999998 995 654444 69999999999999998 89999999998776 8999999999999998 


Q ss_pred             --CCCeEEEEecCCccccccccCC-CCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHc
Q 024528          159 --DEGVLIIGSGSATHNLRALQFD-GDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMG  235 (266)
Q Consensus       159 --d~~v~iiaSG~lSH~l~~~~~~-~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lG  235 (266)
                        ++||+|||||++|||+...++. .....+|+++||++++++|+++|.++|+++.   |..+.+|++.||++|+++++|
T Consensus       156 ~~~~~vliI~SGdlsH~~~~~~~~~~~~~~~~~~efD~~~~~~l~~~d~~~l~~~~---~~~~~~~~~~~g~~~~~~~~g  232 (260)
T cd07320         156 PSDLRVHVVASGDLSHQLQGDRPSSQSGYYPIAEEFDKYVIDNLEELDPVEFKNMH---QYLTISNATPCGFHPLLILLG  232 (260)
T ss_pred             hcCCcEEEEEeCccccCCCCCCcccccCcCcchHHHHHHHHHHHHcCCHHHHhhcC---hHHHhcCCCccCHHHHHHHHH
Confidence              8899999999999999777542 1235689999999999999999999999873   666899999999999999999


Q ss_pred             cCCCCCc-eEEecceeeeceeeeeEEEE
Q 024528          236 AAGENAN-AELIHTSWQLGTISYSSYKF  262 (266)
Q Consensus       236 a~~~~~~-~~~~~~~~~~~~~~~~~~~~  262 (266)
                      |+++..+ .+++++.+..++.||.+..|
T Consensus       233 a~~~~~~~~~~~~~~~~~~~vg~~~~~~  260 (260)
T cd07320         233 ALDGKERKDLFTVYGIPSSSTGYAAAIL  260 (260)
T ss_pred             hcCCCccceEEeecCCCCCCceEEEEEC
Confidence            9987655 67788888788999988876

Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class

>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases

Probab=100.00  E-value=2.5e-48  Score=345.19  Aligned_cols=225  Identities=18%  Similarity=0.259  Sum_probs=187.7

Q ss_pred             EEEEcCCCCCCCCCC--CchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCC
Q 024528            7 TFFISHGSPTLSIDE--SLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPA   84 (266)
Q Consensus         7 ~~fisHg~P~~~~~~--~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~   84 (266)
                      ++|+|||+|++....  .+++.+++++.+.+  ..+||+||||||||......++++..+ .++||+|||.+.|+++|  
T Consensus         2 ~~fi~HG~~~~~~~~~~~~~~~~~l~~~~~~--~~~Pd~IvvispH~~~~~~~~~i~~~~-~~~g~~~~p~~~~~~~~--   76 (256)
T cd07952           2 IAVIPHGDEIIDPLDEESRKLNEAIKEEGAK--NDDPDVLVVITPHGIRLSGHVAVILTE-YLEGTLRTNKVLIRSKY--   76 (256)
T ss_pred             eEEcCCCCccCCCCCcchHHHHHHHHHHHHH--hcCCCEEEEECCCcccccCceEEeecC-eeeeecccCCCceEEec--
Confidence            589999998876533  23556677765543  578999999999999877766666543 48999999999887767  


Q ss_pred             CCCHHHHHHHHHHHHhCCCCcccc---------cCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhc
Q 024528           85 PGAPELAKRVKQLLTESGFNHVNE---------DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALA  155 (266)
Q Consensus        85 ~g~~eLa~~i~~~l~~~g~d~~~~---------~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~  155 (266)
                      |||++||++|.+.++++|++ +..         ...+++|||+||||.||+|.   ||||+|++..++++++++||++|+
T Consensus        77 ~~d~ela~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~~---pvV~is~~~~~~~~~~~~lG~aL~  152 (256)
T cd07952          77 PNDRELANEIYKSARADGIP-VLGINFATSSGDNSDFPLDWGELIPLSFLKKR---PIVLITPPRLLPREELVEFGRALG  152 (256)
T ss_pred             CCCHHHHHHHHHHHHHcCCc-eeeccchhhccccCCCCCCccccccHhhCCCC---CeEEEccccCCCHHHHHHHHHHHH
Confidence            69999999999999999994 542         23688999999999999985   999999977679999999999999


Q ss_pred             cc---cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHH
Q 024528          156 PL---KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHV  232 (266)
Q Consensus       156 ~~---~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~  232 (266)
                      ++   +++||+|||||++||++....++  ++++|+++||+|++++|+++|.++|+++.+.    +.+|++.|||+|+++
T Consensus       153 ~~~~~~~~~vliIaSGdlSH~l~~~~p~--~~~~~a~~fD~~~~~~l~~~d~~~l~~~~~~----~~~~a~~cg~~pl~~  226 (256)
T cd07952         153 KALEGYEKRVAVIISADHAHTHDPDGPY--GYSPDAAEYDAAIVEAIENNDFEALLELDDE----LIEKAKPDSYWQLLI  226 (256)
T ss_pred             HHHHhcCCcEEEEEecCccccCCCCCCC--CCCcchHHHHHHHHHHHHcCCHHHHHhCCHH----HHHHhhhcCHHHHHH
Confidence            98   57799999999999999765433  4578999999999999999999999998544    788899999999999


Q ss_pred             HHccCCCC-CceEEe
Q 024528          233 AMGAAGEN-ANAELI  246 (266)
Q Consensus       233 ~lGa~~~~-~~~~~~  246 (266)
                      ++|++... .+++++
T Consensus       227 ~lga~~~~~~~~~vl  241 (256)
T cd07952         227 LAGILESSPRKSKVL  241 (256)
T ss_pred             HHhhccCCCccceEE
Confidence            99998653 356665

This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.

>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol

Probab=100.00  E-value=3.3e-48  Score=346.22  Aligned_cols=227  Identities=24%  Similarity=0.304  Sum_probs=186.5

Q ss_pred             CCCcceEEEEcCCCCCCCCC-CC---chHHHHHHHHHHHhhcCCCCEEEEEeC-CCCC----CCCeEEeccCCCcccCCC
Q 024528            1 MSTVKNTFFISHGSPTLSID-ES---LPARHFLKAWKEQVFTQRPNSILVISG-HWET----DVPTVNVVQQNDVIYDFY   71 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~~-~~---~~~~~~~~~l~~~i~~~~Pd~IvviS~-Hw~~----~~~~i~~~~~~~~~~Df~   71 (266)
                      |++|+.++++||  +++.-. +.   .++.++++++++++++.+||+|||||| ||.+    ..+.++++...+ .+||+
T Consensus         1 M~~iv~~~~~~H--~~~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~-~~~~~   77 (268)
T cd07367           1 MAKIVGAAATSH--ILMSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADS-YTPFG   77 (268)
T ss_pred             CceeEEEEecCC--cCcCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccc-cccCC
Confidence            999999999999  443321 11   266889999999998899999999999 5554    235555543332 33554


Q ss_pred             --CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCC----ChH
Q 024528           72 --NFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRK----DGT  145 (266)
Q Consensus        72 --gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~----~~~  145 (266)
                        |||+.      .++||++||++|++.+.++||| ++.+.++++|||+||||+||+|+.++||||||+|...    +++
T Consensus        78 ~~g~p~~------~~~gd~~LA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~  150 (268)
T cd07367          78 DMDIPRE------LFPGHREFARAFVRQAAEDGFD-LAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPR  150 (268)
T ss_pred             cCCCCcc------cCCCCHHHHHHHHHHHHHcCCC-eeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHH
Confidence              88864      5799999999999999999996 7878889999999999999999999999999998875    489


Q ss_pred             HHHHHHHHhccc------cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhh
Q 024528          146 HHYNMGKALAPL------KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKK  219 (266)
Q Consensus       146 ~~~~lG~aL~~~------~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~  219 (266)
                      +||+||++|+++      +++||+|||||+|||||....     ..+++++||+|+++++++||.++|+++..   ....
T Consensus       151 ~~~~lG~al~~~i~~~~~~d~rV~iiaSGgLSH~l~~~~-----~~~~~~efD~~i~~~l~~gd~~~L~~~~~---~~~~  222 (268)
T cd07367         151 RCWALGKVLAQYVEKRRPAGERVAVIAAGGLSHWLGVPR-----HGEVNEAFDRMFLDLLEGGNGERLAGMGN---DEIL  222 (268)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEcccccCCCCCCc-----ccccCHHHHHHHHHHHHcCCHHHHHhCCH---HHHH
Confidence            999999999999      789999999999999995432     22688999999999999999999999952   1256


Q ss_pred             cCCCcCcHH--HHHHHHccCCCCCceEEe
Q 024528          220 AHPWPDHFY--PLHVAMGAAGENANAELI  246 (266)
Q Consensus       220 a~p~~~h~~--pl~~~lGa~~~~~~~~~~  246 (266)
                      ..+++|++.  +|++++||+++. +.+++
T Consensus       223 ~~ag~~g~e~~~w~~~~GAl~~~-~~~v~  250 (268)
T cd07367         223 DQAGNGGLEIVNWIMAAAAVEAQ-SGEKV  250 (268)
T ss_pred             HhCcccchHHHHHHHHHhhcCCC-CccEE
Confidence            677889998  999999999764 35553

CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.

>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate

Probab=100.00  E-value=9.2e-47  Score=337.69  Aligned_cols=232  Identities=22%  Similarity=0.302  Sum_probs=195.6

Q ss_pred             CCCcceEEEEcCCCCCCCC---CC--C----chHHHHHHHHHHHhhcCCCCEEEEE-eCCCCC----CCCeEEeccCCCc
Q 024528            1 MSTVKNTFFISHGSPTLSI---DE--S----LPARHFLKAWKEQVFTQRPNSILVI-SGHWET----DVPTVNVVQQNDV   66 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~---~~--~----~~~~~~~~~l~~~i~~~~Pd~Ivvi-S~Hw~~----~~~~i~~~~~~~~   66 (266)
                      |++|+.++++||. |.+..   .+  .    .++.++++++++++++.+||+|||| |+|...    ..|.|.++..++.
T Consensus         1 Ma~iv~a~~~sH~-P~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~   79 (277)
T cd07364           1 MARIIAGVGTSHV-PAIGAAMDNGKTDEPYWKPLFKGYQPARDWIKKNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEF   79 (277)
T ss_pred             CHHHHhhhcCCCC-ccccccccCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHhhcccCCCceEEeecccc
Confidence            9999999999998 87765   22  1    2677899999999999999999999 779643    3468888877777


Q ss_pred             ccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCC--
Q 024528           67 IYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTR--  141 (266)
Q Consensus        67 ~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~--  141 (266)
                      .+++++|......   +++||++||++|++.+.++||| ++...++++|||+||||+||+|+.+   +||||||+|..  
T Consensus        80 ~~~~~~~g~~~~~---~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~  155 (277)
T cd07364          80 QPADEGYGPRPVP---DVQGHPDLAWHIAQSLILDDFD-MTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQY  155 (277)
T ss_pred             ccCccccCCCCCC---CCCCCHHHHHHHHHHHHHcCCC-EEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCC
Confidence            8777777532111   6899999999999999999996 8888889999999999999999754   78999999877  


Q ss_pred             --CChHHHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcC
Q 024528          142 --KDGTHHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKA  214 (266)
Q Consensus       142 --~~~~~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~  214 (266)
                        .++++||+||++|+++     +|+||+|||||+|||||.....   +  .++++||+|+++++++ |.++|++++. .
T Consensus       156 p~~~~~~~~~lG~al~~~i~~~~rd~rV~iIaSG~lSH~L~~~~~---g--~~~~eFD~~i~~~l~~-d~~~l~~~~~-~  228 (277)
T cd07364         156 PQPTGKRCFALGKAIRRAVESYDEDLKVAIWGTGGMSHQLQGERA---G--LINKEFDNRFLDKLIS-DPEGLAKMPH-I  228 (277)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCc---c--CchHHHHHHHHHHHHh-CHHHHHcCCc-h
Confidence              6889999999999999     6899999999999999976532   2  3589999999999997 9999999953 5


Q ss_pred             chhhhcCCCcCcHHHHHHHHccCCCCCceEE
Q 024528          215 PCAKKAHPWPDHFYPLHVAMGAAGENANAEL  245 (266)
Q Consensus       215 p~~~~a~p~~~h~~pl~~~lGa~~~~~~~~~  245 (266)
                      +....+|+...|+++|++++||+++ .+.+.
T Consensus       229 ~~~~~ag~~g~e~~~wi~~~GAl~~-~~~~~  258 (277)
T cd07364         229 EYLREAGSEGIELVMWLIMRGALDE-QVREL  258 (277)
T ss_pred             HHHHHcCccchhHHHHHHHHhhhcc-CCeEE
Confidence            7778889888899999999999976 34443

Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.

>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase

Probab=100.00  E-value=1.6e-46  Score=335.98  Aligned_cols=222  Identities=21%  Similarity=0.319  Sum_probs=188.2

Q ss_pred             CCCcceEEEEcCCCCCCCCCCC---c------hHHHHHHHHHHHhhcCCCCEEEEEe-CC----CCCCCCeEEeccCCCc
Q 024528            1 MSTVKNTFFISHGSPTLSIDES---L------PARHFLKAWKEQVFTQRPNSILVIS-GH----WETDVPTVNVVQQNDV   66 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~~~~---~------~~~~~~~~l~~~i~~~~Pd~IvviS-~H----w~~~~~~i~~~~~~~~   66 (266)
                      |++++.++++||- |.+...+.   .      ++.++++++++++++.+||+||||| ||    |.+..+.|+++..++.
T Consensus         1 M~~iv~a~~~sHv-P~ig~~~~~~~~~t~~~~~~~~a~~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~   79 (276)
T cd07949           1 MAKIIGGITTSHV-PAIGGAIAKGLQQTPYWKPFFDGFPPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSY   79 (276)
T ss_pred             ChHHHhhhcCCCC-CcccccccccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccc
Confidence            8999999999995 77653221   1      3368999999999999999999999 59    6666778888876666


Q ss_pred             ccCC--CCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCC--CCCeEEEEecCCC
Q 024528           67 IYDF--YNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEA--NIPVCQLSVQTRK  142 (266)
Q Consensus        67 ~~Df--~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~--~iPvV~vs~~~~~  142 (266)
                      .+|+  +|+|+     +|+++||++||++|++.+.++||| ++.+.++++|||+||||+||+|+.  ++||||||+|...
T Consensus        80 ~g~~~~~g~~~-----~~~~~g~~~LA~~i~~~~~~~g~d-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvV~i~~n~~~  153 (276)
T cd07949          80 RNADEGWGIPA-----LAPFKGDPELSWHLIESLVEDEFD-ITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINTVQ  153 (276)
T ss_pred             cCcccccCCCC-----CCCCCCCHHHHHHHHHHHHHcCCC-eeccCCCCCCcchhhHHHHhcCccCCCCCEEEEEeccCC
Confidence            6663  46665     569999999999999999999995 888889999999999999999985  5999999999775


Q ss_pred             ----ChHHHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcch-h
Q 024528          143 ----DGTHHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYE-Q  212 (266)
Q Consensus       143 ----~~~~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~-~  212 (266)
                          ++++||+||++|+++     +|+||+|||||+|||||.....     ..++++||+|+++.|+ +|.++|++++ +
T Consensus       154 ~p~~~~~~~~~lG~al~~~i~~~~~d~rv~iiaSG~lSH~l~~~~~-----g~~~~~fD~~~~~~l~-~d~~~L~~~~~~  227 (276)
T cd07949         154 HPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLGTGGLSHQLDGERA-----GFINKDFDRYCLDKMV-DNPEWLTKYSIE  227 (276)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCc-----ccchHHHHHHHHHHHh-cCHHHHHcCCHH
Confidence                789999999999998     4679999999999999964321     2367999999999999 6999999996 3


Q ss_pred             cCchhhhcCCCcCcHH--HHHHHHccCCC
Q 024528          213 KAPCAKKAHPWPDHFY--PLHVAMGAAGE  239 (266)
Q Consensus       213 ~~p~~~~a~p~~~h~~--pl~~~lGa~~~  239 (266)
                      +    ....+++|++.  +|++++||+++
T Consensus       228 ~----~~~~AG~~g~e~~~wi~~~GAl~~  252 (276)
T cd07949         228 E----LVELAGTQGVEFLMWIAMRGALGD  252 (276)
T ss_pred             H----HHHHcccccHHHHHHHHHHHhhcc
Confidence            4    56788899988  79999999975

This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=1.8e-46  Score=336.07  Aligned_cols=242  Identities=20%  Similarity=0.296  Sum_probs=195.4

Q ss_pred             CCCcceEEEEcCCCCCCCCCC--C--------chHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEeccCCC
Q 024528            1 MSTVKNTFFISHGSPTLSIDE--S--------LPARHFLKAWKEQVFTQRPNSILVI-SGHWETD----VPTVNVVQQND   65 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~~~--~--------~~~~~~~~~l~~~i~~~~Pd~Ivvi-S~Hw~~~----~~~i~~~~~~~   65 (266)
                      |++|+.++.+||  ||++...  .        .++.++++++++++++.+||+|||| |+|+..+    .+.|+++...+
T Consensus         1 M~~Iv~a~~~sH--~P~i~~~~~~g~~~~~~~~~~~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~   78 (284)
T PRK13366          1 MARITASVYTSH--VPAIGAAIDLGKTGEPYWQPVFKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAE   78 (284)
T ss_pred             CcceeEEeecCC--CCccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCce
Confidence            999999999999  4444432  1        2677899999999999999999999 8897543    45777776666


Q ss_pred             cccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCCC
Q 024528           66 VIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTRK  142 (266)
Q Consensus        66 ~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~~  142 (266)
                      ...++.+|..  .++. +++||++||++|++.+.++||| ++...++++|||+||||+||+|+.+   +||||||+|...
T Consensus        79 ~~~~~~~~g~--~~v~-~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~  154 (284)
T PRK13366         79 YQPADEGWGP--RPVP-KVIGHPDLAAHIAQSVIQDDFD-LTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQ  154 (284)
T ss_pred             ecCcccccCC--CCCC-CCCCCHHHHHHHHHHHHHCCCC-EeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCC
Confidence            6556555432  2344 7899999999999999999996 8878899999999999999999754   999999999886


Q ss_pred             ----ChHHHHHHHHHhcccc-----CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhc
Q 024528          143 ----DGTHHYNMGKALAPLK-----DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQK  213 (266)
Q Consensus       143 ----~~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~  213 (266)
                          ++++||+||++|++++     |+||+|||||+|||||..++.   ++  .+++||+++++.+++ |.++|++++.+
T Consensus       155 ~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH~l~~p~~---g~--~~~~fD~~~l~~l~~-d~~~l~~l~~~  228 (284)
T PRK13366        155 YPVPSGRRCFALGQAIRRAVESYDEDLNVQIWGTGGMSHQLQGPRA---GL--INREWDNAFLDRLIA-DPDGLSKMPHI  228 (284)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCC---CC--CcHHHHHHHHHHHhc-CHHHHHcCCHH
Confidence                8899999999999994     689999999999999985432   22  279999999999976 99999999641


Q ss_pred             CchhhhcCCCcC--cHHHHHHHHccCCC---CCceEEecceeeeceeeee
Q 024528          214 APCAKKAHPWPD--HFYPLHVAMGAAGE---NANAELIHTSWQLGTISYS  258 (266)
Q Consensus       214 ~p~~~~a~p~~~--h~~pl~~~lGa~~~---~~~~~~~~~~~~~~~~~~~  258 (266)
                         .....+++|  +.+.|++|+||.++   +.+.+.+|+.|... +|++
T Consensus       229 ---~~~~~AG~~G~e~~~Wi~~~gAl~~~~~~~~~~~~~~~~~~~-~~~~  274 (284)
T PRK13366        229 ---DYVREAGSEGIELVMWLIARGAMSDVAGGPKPKVAHRFYHVP-ASNT  274 (284)
T ss_pred             ---HHHHHcccchHHHHHHHHHHHhhhcccccCCceEeeeceecc-cccc
Confidence               155667777  45556999999865   45789999988654 4555

>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional

Probab=100.00  E-value=2.6e-46  Score=347.27  Aligned_cols=242  Identities=23%  Similarity=0.306  Sum_probs=201.6

Q ss_pred             CCcceEEEEcCCCCCCCC--CC--C-----chHHHHHHHHHHHhhcCCCCEEEEEeC-CCC----CCCCeEEeccCCCcc
Q 024528            2 STVKNTFFISHGSPTLSI--DE--S-----LPARHFLKAWKEQVFTQRPNSILVISG-HWE----TDVPTVNVVQQNDVI   67 (266)
Q Consensus         2 ~~~~~~~fisHg~P~~~~--~~--~-----~~~~~~~~~l~~~i~~~~Pd~IvviS~-Hw~----~~~~~i~~~~~~~~~   67 (266)
                      ++|+..+..||. |.+..  +.  .     .+..++++++++++++.+||+||||++ |..    ...++|+++...+..
T Consensus       149 A~Iv~g~~tSH~-P~ig~A~d~~~~~~~~~~~v~~~~~~~r~~l~~~~PDVvVi~~nDH~~~Ff~d~mP~FaIG~~~~~~  227 (444)
T PRK13372        149 AQISAALFSSHV-PAIGAAIDLGKTEEDYWKKLFAGYDLSREWAKEHLPDVIILVYNDHATAFDLEIIPTFAIGTAAEFP  227 (444)
T ss_pred             cceeeeeccCcc-cccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEEccccC
Confidence            588999999997 86643  11  1     256688999999999999999999988 854    446778777655555


Q ss_pred             -cCCCCCc-cccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCC---CCCeEEEEecCCC
Q 024528           68 -YDFYNFP-EQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEA---NIPVCQLSVQTRK  142 (266)
Q Consensus        68 -~Df~gfp-~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~---~iPvV~vs~~~~~  142 (266)
                       +|+ |+. ..    ..++||+++||++|++.|.++||| ++.+.++++|||+||||.+|+|+.   +|||||||+|...
T Consensus       228 p~d~-g~G~~~----v~~~pG~peLA~~I~~~L~~~GfD-~a~~~erglDHG~~vPL~lm~P~ad~~~IPVVPvsvN~~~  301 (444)
T PRK13372        228 PADE-GWGPRP----VPDVIGHPELAAHIAQSVIQDDFD-LTIVNEMDVDHGLTVPLSLMCGDPEAWPCPVIPFAVNVVQ  301 (444)
T ss_pred             CCcc-cCCCCC----CCCCCCCHHHHHHHHHHHHhcCCC-hhhccCCCCCchhhhhHHHhCCcccCCCCCeEEEEecCCC
Confidence             675 332 21    138999999999999999999997 888899999999999999999985   5999999999884


Q ss_pred             ----ChHHHHHHHHHhccccC------CCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchh
Q 024528          143 ----DGTHHYNMGKALAPLKD------EGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQ  212 (266)
Q Consensus       143 ----~~~~~~~lG~aL~~~~d------~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~  212 (266)
                          ++++||+||++|+++++      +||+|||||++||||...+.     ..++++||+|+++.|++ |.++|.+|+ 
T Consensus       302 ~Plps~~R~~~LG~AL~~lres~~~D~erVlIIGSGGLSHnL~~~~~-----g~in~eFD~~~ld~L~~-D~e~L~~~~-  374 (444)
T PRK13372        302 YPVPSGRRCYELGQAIRRAIDKWDADPLNVQIWGTGGMSHQLQGPRA-----GLINEEFDNAFLDHLIA-DPEAAAEIP-  374 (444)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhcccccCCEEEEecCcccCCCCCCCC-----ccchHHHHHHHHHHHHh-CHHHHHcCc-
Confidence                89999999999999986      99999999999999976432     26899999999999997 999999995 


Q ss_pred             cCchhhhcCCCcCcHHHHHHHHccCCCCC---------------ceEEecceeeeceeeee
Q 024528          213 KAPCAKKAHPWPDHFYPLHVAMGAAGENA---------------NAELIHTSWQLGTISYS  258 (266)
Q Consensus       213 ~~p~~~~a~p~~~h~~pl~~~lGa~~~~~---------------~~~~~~~~~~~~~~~~~  258 (266)
                      ..+..+.+|++.+|++||++++||+++..               +.+.+|+.|... .|++
T Consensus       375 ~~~~~~~aG~~g~El~~Wiva~GAl~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p-~s~t  434 (444)
T PRK13372        375 HIDYVDEAGSEGIELVDWLIARGAMDDQAGGASPDAAADGATGRPPKVNHRFYHVP-ASNT  434 (444)
T ss_pred             ccHHHHHcCCchHHHHHHHHHHhhhhccccccccccccccccccccceeecceecc-cccc
Confidence            57999999999999999999999997633               247899988654 4444

>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes

Probab=100.00  E-value=1.7e-45  Score=329.46  Aligned_cols=230  Identities=22%  Similarity=0.300  Sum_probs=184.3

Q ss_pred             CcceEEEEcCCCCCCCCCCC--------chHHHHHHHHHHHhhcCCCCEEEEEeCC-----CCCCCCeEEeccCCCcccC
Q 024528            3 TVKNTFFISHGSPTLSIDES--------LPARHFLKAWKEQVFTQRPNSILVISGH-----WETDVPTVNVVQQNDVIYD   69 (266)
Q Consensus         3 ~~~~~~fisHg~P~~~~~~~--------~~~~~~~~~l~~~i~~~~Pd~IvviS~H-----w~~~~~~i~~~~~~~~~~D   69 (266)
                      +|+.++++||  ||+++++.        .++.++|+++++++++.+||+|||||||     |++..+.++++.......+
T Consensus         1 ~iv~~~~~~H--~P~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~~~~   78 (271)
T cd07359           1 KIVLGIGASH--APGLTGAADPGPDAVRAAVFAAFARIRDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSYEGP   78 (271)
T ss_pred             CeEEEEecCC--CCcccCCCCCCcHhHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccccCC
Confidence            5788899999  44443321        2667899999999998999999999994     4444444444332222222


Q ss_pred             CCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCC----ChH
Q 024528           70 FYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRK----DGT  145 (266)
Q Consensus        70 f~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~----~~~  145 (266)
                      +.+|   .|...|+++||++||++|.+.+.+.|++ ++.+.++++|||+||||+||+|+.++||||||+|...    +++
T Consensus        79 ~~~~---~~~~~~~~~~d~elA~~i~~~~~~~g~~-~a~~~~~~lDHg~~vpL~~l~~~~~~pvVpvsv~~~~~~~~~~~  154 (271)
T cd07359          79 DEGW---LGIPRAPVPGDADLARHLLAGLVEDGFD-VAFSYELRLDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLPSLR  154 (271)
T ss_pred             cccc---ccCcCCCCCCCHHHHHHHHHHHHHcCCC-eeccCCCCCCcchhhHHHHhcCCCCCCEEEEEecccCCCCCCHH
Confidence            2222   4667889999999999999999999995 8888889999999999999999999999999998754    789


Q ss_pred             HHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhc
Q 024528          146 HHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKA  220 (266)
Q Consensus       146 ~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a  220 (266)
                      +|++||++|+++     +|+||+|||||++|||+.....     .+++++||++++++|+++|.++|+++. ..+....+
T Consensus       155 ~~~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH~l~~~~~-----g~~~~~fD~~~~~~l~~~d~~~l~~~~-~~~~~~~a  228 (271)
T cd07359         155 RCYALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGPRH-----GEINEEFDREFLDLLERGDLEALLKAT-TEETLEEA  228 (271)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcEEEEecCcccCCCCCccc-----cccCHHHHHHHHHHHHhCCHHHHHhcC-HHHHHHHc
Confidence            999999999997     5789999999999999976432     257899999999999999999999884 34555667


Q ss_pred             CCCcCcHHHHHHHHccCCCCCceEE
Q 024528          221 HPWPDHFYPLHVAMGAAGENANAEL  245 (266)
Q Consensus       221 ~p~~~h~~pl~~~lGa~~~~~~~~~  245 (266)
                      ++...||+||++++||+++.. ++.
T Consensus       229 g~~~~e~~~~~~~~GA~~~~~-~~~  252 (271)
T cd07359         229 GNGGHEILNWIAAAGALGEAP-GEV  252 (271)
T ss_pred             CCCcHHHHHHHHHHHhhccCc-cce
Confidence            776666999999999987643 444

This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres

>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway

Probab=100.00  E-value=1.2e-45  Score=331.01  Aligned_cols=230  Identities=19%  Similarity=0.220  Sum_probs=185.7

Q ss_pred             CCCcceEEEEcCCCCCCCC--CCC------chHHHHHHHHHHHhhcCCCCEEEEEe-CCCCCC----CCeEEeccCCCcc
Q 024528            1 MSTVKNTFFISHGSPTLSI--DES------LPARHFLKAWKEQVFTQRPNSILVIS-GHWETD----VPTVNVVQQNDVI   67 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~--~~~------~~~~~~~~~l~~~i~~~~Pd~IvviS-~Hw~~~----~~~i~~~~~~~~~   67 (266)
                      |++|+.++++||  ||+++  ++.      .++.++++++++++++.+||+||||| +||..+    .+++.++... ..
T Consensus         1 M~~iv~a~~~sH--~P~i~~~~~~~~~~~~~~~~~a~~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~~-~~   77 (277)
T cd07368           1 MGKIVGGFMMPH--DPVMFVTPTAPPAAQREICWHAYAICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGTGD-VD   77 (277)
T ss_pred             CcceeEEeecCC--CccccCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEeccc-cc
Confidence            999999999999  55543  331      36678999999999999999999998 588654    3555666544 46


Q ss_pred             cCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-----CCCCeEEEEecCC-
Q 024528           68 YDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-----ANIPVCQLSVQTR-  141 (266)
Q Consensus        68 ~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-----~~iPvV~vs~~~~-  141 (266)
                      +||..||...   +..++|+++||++|++.+.++||| ++.+.++++|||+||||+||+|+     .++|+|||++|.+ 
T Consensus        78 g~~~~~~~~~---~~~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~  153 (277)
T cd07368          78 GPYDPLPGLP---RAVIENNEPLAHHIMQHGLEYGID-WAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGV  153 (277)
T ss_pred             CCccccCCCC---cccCcCCHHHHHHHHHHHHHcCCC-EeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEeccc
Confidence            6665554421   246899999999999999999995 77888999999999999999985     4888999988654 


Q ss_pred             ---CChHHHHHHHHHhcc-----ccCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhc
Q 024528          142 ---KDGTHHYNMGKALAP-----LKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQK  213 (266)
Q Consensus       142 ---~~~~~~~~lG~aL~~-----~~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~  213 (266)
                         .++++||+||++|++     .+|+||+|||||+|||||+....     .+++++||+|+++++++||.++|+++..+
T Consensus       154 ~p~~~~~~~~~lG~al~~ai~~~~~d~rVliIaSG~LSH~l~~~~~-----~~~~~~fD~~~~~~l~~gd~~~L~~~~~~  228 (277)
T cd07368         154 DPFITSWRAHELGRVIGAAVEAWQGDERVAIIGSGGISHWVGTAEM-----GAVNEGFDREIMKLVAQGDLAALIALSDE  228 (277)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCcccCCCCCccc-----cccCHHHHHHHHHHHHcCCHHHHHhCCHH
Confidence               567999999999999     56899999999999999966432     37889999999999999999999999522


Q ss_pred             CchhhhcCCCcCc--HHHHHHHHccCCCCCceEEe
Q 024528          214 APCAKKAHPWPDH--FYPLHVAMGAAGENANAELI  246 (266)
Q Consensus       214 ~p~~~~a~p~~~h--~~pl~~~lGa~~~~~~~~~~  246 (266)
                         .....+++|+  +++|++++||.++. +.+++
T Consensus       229 ---~~~~~aG~gg~e~~~~~~~~Gal~~~-~~~vl  259 (277)
T cd07368         229 ---EILEDGGNGGMEIRNWACAMGALPAA-RGEVI  259 (277)
T ss_pred             ---HHHHHcccccHHHHHHHHHHHhcCCC-CccEE
Confidence               1444555666  99999999999754 55654

This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=100.00  E-value=2.2e-45  Score=331.15  Aligned_cols=237  Identities=18%  Similarity=0.218  Sum_probs=191.5

Q ss_pred             CCcceEEEEcCCCCCCCCCC----C--------chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccC
Q 024528            2 STVKNTFFISHGSPTLSIDE----S--------LPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYD   69 (266)
Q Consensus         2 ~~~~~~~fisHg~P~~~~~~----~--------~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~D   69 (266)
                      ++|+.++.+||. |++.+.+    .        .++.++++++++++++.+||+||||||||.++.. ..+...++..+|
T Consensus         1 g~iv~a~~~pH~-p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~Pd~IVViSpHw~~~~~-~~~~~~p~~~G~   78 (294)
T cd07372           1 GEIISGFLAPHP-PHLVYGENPPQNEPRSQGGWEQLRWAYERARESIEALKPDVLLVHSPHWITSVG-HHFLGVPELSGR   78 (294)
T ss_pred             CeeEEEEecCCC-CeeecccCCcccccccchhHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccC-eeeecCCccccc
Confidence            578999999995 6665432    1        1366899999999999999999999999998764 223334566777


Q ss_pred             CCCC--ccccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhccCCCCCeEEEEecC-----
Q 024528           70 FYNF--PEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT-----  140 (266)
Q Consensus        70 f~gf--p~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~-----  140 (266)
                      |.+|  | ++|+++|+++||++||++|++.++++||+ +.  .+.++++|||+||||+||+|+.++|||+||+|.     
T Consensus        79 ~~~~~~p-~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~-~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~  156 (294)
T cd07372          79 SVDPIFP-NLFRYDFSMNVDVELAEACCEEGRKAGLV-TKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYL  156 (294)
T ss_pred             ccccccc-cceeeccCCCCCHHHHHHHHHHHHHCCCC-eeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccc
Confidence            7764  5 57888999999999999999999999995 64  367899999999999999999999999999864     


Q ss_pred             --CCChHHHHHHHHHhccc-c--CCCeEEEEecCCccccccccCCC-CCc---ch---hHHHHHHHHHHHHHcCCHhHHh
Q 024528          141 --RKDGTHHYNMGKALAPL-K--DEGVLIIGSGSATHNLRALQFDG-DSV---AS---WASEFDNWLKDALLQGRYEDVN  208 (266)
Q Consensus       141 --~~~~~~~~~lG~aL~~~-~--d~~v~iiaSG~lSH~l~~~~~~~-~~~---~~---~~~eFD~~v~~~l~~gd~~~l~  208 (266)
                        ..+++++|+||++|+++ +  ++||+|||||+|||+|....+++ .++   ++   .+++||+.+++++++||.++|+
T Consensus       157 ~~~~~~~~~~~lG~ai~~al~~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~l~~gd~~~l~  236 (294)
T cd07372         157 NTKEGLGEMDVLGKATREAIRKTGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIELMRQGRMKEVF  236 (294)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence              24479999999999995 3  58899999999999984333321 112   22   7899999999999999999999


Q ss_pred             cchhcCchhhhcCC-CcCcHHHHHHHHccCCCCC-ceEEe
Q 024528          209 HYEQKAPCAKKAHP-WPDHFYPLHVAMGAAGENA-NAELI  246 (266)
Q Consensus       209 ~~~~~~p~~~~a~p-~~~h~~pl~~~lGa~~~~~-~~~~~  246 (266)
                      ++..+    ...++ ++|++.++.+++||+++.. +++++
T Consensus       237 ~~~~~----~~~~A~ge~g~~~~~~~~ga~~~~~~~~~vl  272 (294)
T cd07372         237 RLLPQ----FIEEAFAEVKSGAFTWMHAAMQYPELAAELH  272 (294)
T ss_pred             hcCHH----HHHHhccccchHHHHHHHHhhcCCCcCceEe
Confidence            99654    45555 7999999999999997543 45544

2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin

>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=1.4e-44  Score=323.22  Aligned_cols=227  Identities=22%  Similarity=0.295  Sum_probs=190.8

Q ss_pred             CCCcceEEEEcCCCCCCCCCC------C---chHHHHHHHHHHHhhcCCCCEEEEEe-CCCCC----CCCeEEeccCCCc
Q 024528            1 MSTVKNTFFISHGSPTLSIDE------S---LPARHFLKAWKEQVFTQRPNSILVIS-GHWET----DVPTVNVVQQNDV   66 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~~~------~---~~~~~~~~~l~~~i~~~~Pd~IvviS-~Hw~~----~~~~i~~~~~~~~   66 (266)
                      |++++.++++||- |.+.-.+      +   .+..++++++++++++.+||+||||| ||...    ..+.|+++...+.
T Consensus         1 M~~iv~~~~~sH~-P~vg~~~~~~~~~~~~~~~v~~a~~~~~~~v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~   79 (278)
T PRK13364          1 MAKIIGGITTSHV-PAIGGAIAKGLQQDPYWKPFFDGFPPVREWLEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEY   79 (278)
T ss_pred             ChhhhceeecCCC-CccccccccccccChhHHHHHHHHHHHHHHHHHhCCCEEEEECCchHhhhccccCCeEEEeeCcee
Confidence            8999999999995 7664111      1   23478999999999999999999999 79654    4568888887888


Q ss_pred             ccCCCCC--ccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC--CCeEEEEecCCC
Q 024528           67 IYDFYNF--PEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN--IPVCQLSVQTRK  142 (266)
Q Consensus        67 ~~Df~gf--p~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~--iPvV~vs~~~~~  142 (266)
                      .+|+.+|  |..     .+++||++||++|++.+.++||| ++.+.++++|||+||||+||+|+.+  +|||||++|+..
T Consensus        80 ~g~~~~~g~~~~-----~~~~~~~~lA~~i~~~l~~~gid-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~  153 (278)
T PRK13364         80 SNADEGWGIPTL-----APFKGDTELSWHIIESLVEEEFD-ITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQ  153 (278)
T ss_pred             cCChhhcCCCCC-----CCCCCCHHHHHHHHHHHHHcCCC-eecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccC
Confidence            8886554  332     48899999999999999999996 8888899999999999999999876  889999998876


Q ss_pred             ----ChHHHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcch-h
Q 024528          143 ----DGTHHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYE-Q  212 (266)
Q Consensus       143 ----~~~~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~-~  212 (266)
                          ++++||+||++|+++     +|+||+|||||+|||||. ..++  ++.  +++||+++++++++ |.++|++++ +
T Consensus       154 ~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~-~~p~--G~~--~~~fD~~~l~~l~~-d~~~l~~~~~~  227 (278)
T PRK13364        154 HPLPSARRCYKLGQAIGRAIASWPSDERVVVIGTGGLSHQLD-GERA--GFI--NKDFDLQCMDSLVS-DPEWLTQYSNH  227 (278)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCC-CCCc--ccC--CHHHHHHHHHHHHh-CHHHHHcCCHH
Confidence                789999999999999     579999999999999997 3333  333  49999999999998 999999996 3


Q ss_pred             cCchhhhcCCCcCcH--HHHHHHHccCCCCCceEE
Q 024528          213 KAPCAKKAHPWPDHF--YPLHVAMGAAGENANAEL  245 (266)
Q Consensus       213 ~~p~~~~a~p~~~h~--~pl~~~lGa~~~~~~~~~  245 (266)
                      +    ....+++|++  ++|++|+||.++ .+.+.
T Consensus       228 e----~~~~AG~~g~Eir~wi~~~gAl~~-~~~~~  257 (278)
T PRK13364        228 E----LVELAGTQGVELLNWLAMRGALGG-KVREV  257 (278)
T ss_pred             H----HHHHcccccHHHHHHHHHHHhhcC-CceEE
Confidence            4    6778889988  999999999976 34443

>PRK03881 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-44  Score=344.63  Aligned_cols=248  Identities=19%  Similarity=0.300  Sum_probs=210.1

Q ss_pred             cceEEEEcCCCCCCCCCCC--------chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCcc
Q 024528            4 VKNTFFISHGSPTLSIDES--------LPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPE   75 (266)
Q Consensus         4 ~~~~~fisHg~P~~~~~~~--------~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~   75 (266)
                      |+.++++||+  |+++++.        .++.++++++++++.+.+||+||||||||......+.+...+...+||++|+.
T Consensus         3 i~~a~~~PH~--P~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~   80 (467)
T PRK03881          3 IVGAYLMPHP--PIIVPEVGRGEEKKIQATIDALRELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGA   80 (467)
T ss_pred             eEEEEEcCCC--CEeecCCCCCchhhHHHHHHHHHHHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCC
Confidence            7889999995  5666531        36778999999999888999999999999987888888888889999999974


Q ss_pred             ccccccCCCCCCHHHHHHHHHHHHhCCCCcccc---------cCCCCccccchhhhhhhccC-CCCCeEEEEecCCCChH
Q 024528           76 QMYKLKYPAPGAPELAKRVKQLLTESGFNHVNE---------DTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQTRKDGT  145 (266)
Q Consensus        76 ~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~---------~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~~~~~  145 (266)
                        |+++|+++||++||++|++.++++||+ +..         +.++++|||+||||.||+|. .++|||||++ ...+++
T Consensus        81 --~~v~~~~~~d~eLA~~i~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~~d~pVVpis~-~~~~~~  156 (467)
T PRK03881         81 --PEVSFSFKNDLELVEEIAEEAKKEGIP-VVEVDEELARKYEVSGELDHGTMVPLYFLRKAGSDFKLVHISY-GGLSPE  156 (467)
T ss_pred             --CCccccCCCCHHHHHHHHHHHHHcCCc-eEeecccccccccCCCCCCceEEeehhhhccccCCCCEEEEeC-CCCCHH
Confidence              789999999999999999999999995 664         57789999999999999998 7999999999 468999


Q ss_pred             HHHHHHHHhcccc---CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCC
Q 024528          146 HHYNMGKALAPLK---DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHP  222 (266)
Q Consensus       146 ~~~~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p  222 (266)
                      ++++||++|++++   ++||+|||||++||++....++  ++.+++++||++++++|+++|.++|+++..+    ...++
T Consensus       157 ~~~~lG~aL~~~~~~~~~rvliIaSGdLSH~l~~~~p~--g~~~~a~~fD~~ii~~i~~gD~~~L~~~~~~----~~~~a  230 (467)
T PRK03881        157 ELYKFGMAIREAAEELGRKVVLIASGDLSHRLTPDGPY--GYAPEGPEFDRAIVELLSKGDVEGLLSIDEE----LIEEA  230 (467)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEeCcccccCCCCCCC--CCCcchHHHHHHHHHHHHcCCHHHHHhcCHH----HHHhh
Confidence            9999999999986   4599999999999999665432  4678999999999999999999999998533    45777


Q ss_pred             CcCcHHHHHHHHccCCCC-CceEEecceeeeceeeeeEEEEcc
Q 024528          223 WPDHFYPLHVAMGAAGEN-ANAELIHTSWQLGTISYSSYKFTA  264 (266)
Q Consensus       223 ~~~h~~pl~~~lGa~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  264 (266)
                      +.|||+|+++++|++.+. .+++.++-.-..| .+|.++.|..
T Consensus       231 ~~cG~~p~~~~lga~~~~~~~~~~l~Y~~~~g-VGYa~~~f~~  272 (467)
T PRK03881        231 GECGLRSVLIMLGALDGYSVKSEVLSYEGPFG-VGYGVARFEP  272 (467)
T ss_pred             hhcCHHHHHHHHHhccccCCCceEEEEeCCcc-cceEEEEEec
Confidence            899999999999998753 2566654222233 7888888853

>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=2.3e-43  Score=315.46  Aligned_cols=227  Identities=22%  Similarity=0.310  Sum_probs=188.0

Q ss_pred             CCCcceEEEEcCCCCCCCC-CC---CchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C--CeEEeccCCCcccC
Q 024528            1 MSTVKNTFFISHGSPTLSI-DE---SLPARHFLKAWKEQVFTQRPNSILVISGHWETD-----V--PTVNVVQQNDVIYD   69 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~-~~---~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-----~--~~i~~~~~~~~~~D   69 (266)
                      |++|+.++++||  +.+.- ++   ..++.++++++++++.+.+||+||||||||.+.     .  .+|..+..+...+|
T Consensus         1 m~~i~~~~~~pH--~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i~~~~~~~p~gd   78 (269)
T PRK13358          1 MGKIVGAFATSH--VLMSSKGGEEQAKRVVEGMREIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLVGTGDSDTPYGD   78 (269)
T ss_pred             Chhhheehcccc--cccCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEEEecCCCCCccc
Confidence            999999999999  43321 11   137789999999999888999999999998743     2  34555666677899


Q ss_pred             CCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCCh----H
Q 024528           70 FYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDG----T  145 (266)
Q Consensus        70 f~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~----~  145 (266)
                      | |||++      .++||++||++|.+.+.+.|+| ++.+.++++|||+|+||++|+|+.++||||||+|+..+|    +
T Consensus        79 ~-g~~~~------~~~g~~~LA~~l~~~~~~~~~~-~a~~~~~~~DHg~~vPl~~l~~~~~~pvVpisv~~~~~p~~~~~  150 (269)
T PRK13358         79 M-DIPRE------LVPGHRAFAQAIALHRAADGFD-LAQAEELRPDHGVMIPLLFMDPGRRIPVVPVYVNINTDPFPSAK  150 (269)
T ss_pred             c-CCCcc------cCCCCHHHHHHHHHHHHHcCCC-eeeccccCCCcchhhhHHHhcCCCCCCEEEEEecccCCCCCCHH
Confidence            8 99986      4799999999999999999995 777788999999999999999999999999999876554    9


Q ss_pred             HHHHHHHHhcccc------CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhh
Q 024528          146 HHYNMGKALAPLK------DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKK  219 (266)
Q Consensus       146 ~~~~lG~aL~~~~------d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~  219 (266)
                      ++++||++|++++      ++||+|||||++||++....     +.+++++||+|++++++++|.++|.++.+.   ...
T Consensus       151 ~~~~lG~al~~~~~~~~~~~~rvlvIaSGdlSH~l~~~~-----~~~~~~~fD~~~~~~i~~~D~~~l~~~~~~---~~~  222 (269)
T PRK13358        151 RCAALGEVIRQAVEKDRPADERVAVIGTGGLSHWLGVPE-----HGEVNEDFDRMVMDALVSGDLEALVALGNE---EIL  222 (269)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCcEEEEecCCccCCCCCcc-----ccccHHHHHHHHHHHHHcCCHHHHHhcCHH---HHH
Confidence            9999999999974      57999999999999986432     247899999999999999999999988532   123


Q ss_pred             cCCCcCcH--HHHHHHHccCCCCCceEEe
Q 024528          220 AHPWPDHF--YPLHVAMGAAGENANAELI  246 (266)
Q Consensus       220 a~p~~~h~--~pl~~~lGa~~~~~~~~~~  246 (266)
                      ...++|.+  ++|++++|+.++ .+++++
T Consensus       223 ~~~G~g~~~~~~~~~~~ga~~g-~~~~~l  250 (269)
T PRK13358        223 EQGGNGGLEIRNWIMAAAAVPG-RRGEKI  250 (269)
T ss_pred             HhcCcccHHHHHHHHHHhhcCC-CccceE
Confidence            44667777  899999999876 366654

>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP)

Probab=100.00  E-value=3.6e-43  Score=319.97  Aligned_cols=235  Identities=18%  Similarity=0.243  Sum_probs=190.0

Q ss_pred             CCCcceEEEEcCCCCCCCC--CCC------chHHHHHHHHHHHhhcCCCCEEEEE-eCCCCC----CCCeEEeccCCCcc
Q 024528            1 MSTVKNTFFISHGSPTLSI--DES------LPARHFLKAWKEQVFTQRPNSILVI-SGHWET----DVPTVNVVQQNDVI   67 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~--~~~------~~~~~~~~~l~~~i~~~~Pd~Ivvi-S~Hw~~----~~~~i~~~~~~~~~   67 (266)
                      |++++.++++||  ||+++  ++.      .++.++++++++++++.+||+|||| |+||..    +.+.|+++..++..
T Consensus         1 Ma~iv~a~~~sH--~P~i~~~p~~~~~~~~~~~~~a~~~l~~~v~~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~   78 (329)
T cd07369           1 MAKIVAAIGMSH--APGALGWPDAPSPDVRARTEEATLKLGRTLTAARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHS   78 (329)
T ss_pred             ChHHheeeecCC--CccccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchhhhccccCccEEEeecceee
Confidence            999999999999  55544  331      3778999999999999999999997 889973    44677777666666


Q ss_pred             cCCC----CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCC--
Q 024528           68 YDFY----NFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTR--  141 (266)
Q Consensus        68 ~Df~----gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~--  141 (266)
                      +||.    +|+-   ..+++++||++||++|++.+.++||| ++.+.++++|||++|||++|+|+.++|||||++|+.  
T Consensus        79 G~~~~~~~~~~~---~~~~~~~gd~eLA~~I~~~l~~~G~d-va~~~~~~~DHG~~vPL~~l~p~~~ipvVpI~in~~~~  154 (329)
T cd07369          79 GPADQLMEALRV---PKKHYFPGNPEVAEQLLRALVHDSFD-CARMGEIEYGNNLLVPWKLMKPDLDVSVIPIYTNVFSP  154 (329)
T ss_pred             ccchhccccCCC---CcccCCCCCHHHHHHHHHHHHHCCCC-eeecCCcCCCccceeeHHHhcCCCCCcEEEEEEeccCC
Confidence            6744    2321   12579999999999999999999996 887888999999999999999999999999999987  


Q ss_pred             --CChHHHHHHHHHhcccc-----CCCeEEEEecCCcc-----------------ccccccCCCCC--------------
Q 024528          142 --KDGTHHYNMGKALAPLK-----DEGVLIIGSGSATH-----------------NLRALQFDGDS--------------  183 (266)
Q Consensus       142 --~~~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH-----------------~l~~~~~~~~~--------------  183 (266)
                        +++++||+||++|++++     |+||+|||||+|||                 +|.+..++|-+              
T Consensus       155 p~~~~~r~~~lG~AI~~aie~~~~d~rVaiIaSG~LSH~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  234 (329)
T cd07369         155 PLMKYSRAYALGAAVRKAIEDLPDDLRVAFMATGGLSHWPPYWNPNQPETDPFLQRMKEYQTYGKPVLEKDPNLFVDLAA  234 (329)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCccccccchhhhhhhhhccccCcCCcCcchhhhhhhhhhhh
Confidence              78899999999999986     48999999999999                 44444443210              


Q ss_pred             ---------------cch-hHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHH--HHHHHccCCCCCceEE
Q 024528          184 ---------------VAS-WASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYP--LHVAMGAAGENANAEL  245 (266)
Q Consensus       184 ---------------~~~-~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~p--l~~~lGa~~~~~~~~~  245 (266)
                                     -++ .+++||+++++++++||.++|.+++.+   ...+.++.|++..  |++++||+++. +.++
T Consensus       235 ~~~~~~~~~~~~~~~~~p~i~~~fD~~~l~~l~~gd~~~l~~~~~~---~~~~~aG~~g~e~~~wi~~~gAl~~~-~~~~  310 (329)
T cd07369         235 YEIEMAKKNQWPLNSKHPLVNAAWDRKFLKAYCRGDSEWLKNLTYE---EVEEEGGHGGHEILNWVAVMGAMDGK-KAKL  310 (329)
T ss_pred             hhhhhhhhhcccccccCCccCHHHHHHHHHHHHcCCHHHHHcCCHH---HHHHHcccchHHHHHHHHHHHhcCCC-Ccce
Confidence                           055 599999999999999999999999622   1455666676655  99999999654 4554

This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>PRK13367 protocatechuate 4,5-dioxygenase; Provisional

Probab=100.00  E-value=7.8e-43  Score=323.86  Aligned_cols=238  Identities=21%  Similarity=0.301  Sum_probs=191.7

Q ss_pred             CCCcceEEEEcCCCCCCCCC----CC-----chHHHHHHHHHHHhhcCCCCEEEEEeC-CCC----CCCCeEEeccC-CC
Q 024528            1 MSTVKNTFFISHGSPTLSID----ES-----LPARHFLKAWKEQVFTQRPNSILVISG-HWE----TDVPTVNVVQQ-ND   65 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~~----~~-----~~~~~~~~~l~~~i~~~~Pd~IvviS~-Hw~----~~~~~i~~~~~-~~   65 (266)
                      |++|+.++++||. |.+...    +.     .+..++++++++++++.+||+||||++ |..    ...++|+++.. .-
T Consensus         1 Ma~iv~g~~~SH~-P~ig~a~~~~~~~~~~~~~v~~~~~~~r~~l~~~~PDvvVv~~nDH~~~Ff~d~~P~F~IG~~~~~   79 (420)
T PRK13367          1 MARIIGGIAVSHT-PTIGFAVDHNKQQDPAWAPIFESFAPLRRWLEEKKPDVLLYIFNDHVTSFFFDHYSAFALGIDEQY   79 (420)
T ss_pred             ChHHHhhhcCCCC-cccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEecccc
Confidence            9999999999997 876442    11     156688999999999999999999988 854    34577666542 23


Q ss_pred             cccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCC-
Q 024528           66 VIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTR-  141 (266)
Q Consensus        66 ~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~-  141 (266)
                      ..|||+|||+++|    +++|+++||++|++.+.++||| ++.+.++++|||+||||++|+|+.+   +|||||++|.. 
T Consensus        80 ~~~D~~g~P~~ly----~~~G~peLA~~I~~~L~~~gfD-~a~~~~~~lDHG~~VPL~~l~p~ad~~P~~VVPi~invvq  154 (420)
T PRK13367         80 AVADEGGGPRDLP----PVRGHAALSRHIGASLMADEFD-MSFFQDKPLDHGLFSPLSALLPHDDGWPVQVVPLQVGVLQ  154 (420)
T ss_pred             cccccCCCccccC----CCCCCHHHHHHHHHHHHhcCCC-eecccCCCCCcchhhhHHHhCCccccCCCceeeeeeceee
Confidence            4799999999885    9999999999999999999997 8889999999999999999999865   77999998864 


Q ss_pred             ---CChHHHHHHHHHhcccc-----CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhc
Q 024528          142 ---KDGTHHYNMGKALAPLK-----DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQK  213 (266)
Q Consensus       142 ---~~~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~  213 (266)
                         .++++||+||++|++++     |+||+|||||+|||||.....   ++  .+++||++++++|++ |.++|.++.. 
T Consensus       155 ~Plps~~r~~~LG~AL~~aie~~~~d~rVlIIgSGgLSH~L~~~~~---g~--~n~~wD~~Fld~L~~-d~e~L~~~~~-  227 (420)
T PRK13367        155 FPIPSARRCYKLGQALRRAIESYPEDLKVAIVATGGLSHQVHGERC---GF--NNPEWDAQFLDLLVN-DPERLTEMTL-  227 (420)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCC---CC--CCHHHHHHHHHHHHh-CHHHHHcCCH-
Confidence               26899999999999996     689999999999999965432   22  237899999999996 9999999953 


Q ss_pred             CchhhhcCCCcCcHHHHHHHHccCCCCCceEEecceeeec
Q 024528          214 APCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTSWQLG  253 (266)
Q Consensus       214 ~p~~~~a~p~~~h~~pl~~~lGa~~~~~~~~~~~~~~~~~  253 (266)
                      ......+..+.-+++.|++|.||+++  +.+..+..|+..
T Consensus       228 ~e~~~~aG~~g~Ei~~Wl~a~GAL~~--~~~~~~~~Yy~P  265 (420)
T PRK13367        228 AEYATLGGMEGAEVIMWLIMRGALSA--NVECLHRDYYLP  265 (420)
T ss_pred             HHHHHHcCCchHHHHHHHHHHhhhcc--CCeeeeeeeeec
Confidence            23344445445579999999999975  335555556544

>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate

Probab=100.00  E-value=8.6e-43  Score=312.22  Aligned_cols=226  Identities=20%  Similarity=0.294  Sum_probs=181.4

Q ss_pred             CCCcceEEEEcCCCCCCCCCCC---------chHHHHHHHHHHHhhcCCCCEEEEEe-CCCCC----CCCeEEeccCCCc
Q 024528            1 MSTVKNTFFISHGSPTLSIDES---------LPARHFLKAWKEQVFTQRPNSILVIS-GHWET----DVPTVNVVQQNDV   66 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~~~~---------~~~~~~~~~l~~~i~~~~Pd~IvviS-~Hw~~----~~~~i~~~~~~~~   66 (266)
                      |++++.++++||- |.+...+.         .++.++++++++++++.+||+||||| +|...    ..+.|+++...+.
T Consensus         1 M~~iv~a~~~sH~-P~ig~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~~   79 (277)
T cd07950           1 MAKIIGGIGSSHT-PTIGFAYDKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDSY   79 (277)
T ss_pred             ChHHhhhhhcCCC-CccCcccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEecccc
Confidence            8999999999994 44433221         36789999999999999999999999 56433    3456776654444


Q ss_pred             -ccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCC-
Q 024528           67 -IYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTR-  141 (266)
Q Consensus        67 -~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~-  141 (266)
                       .+||.++|+..    ++++||++||++|++.+.++||| ++.+.++++|||+||||+||+|+.+   +|||||++|.. 
T Consensus        80 ~~~d~~~~~~~~----~~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~  154 (277)
T cd07950          80 EVADEGGGPRDL----PPIRGHAALAQHIAESLVADEFD-LTFFQDKPLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQ  154 (277)
T ss_pred             cccccccCCccC----CCCCCCHHHHHHHHHHHHhcCCC-eeeccCCCCCceeeeeHHHhCcccccCCCceEEEEEEeEe
Confidence             66777778765    48999999999999999999996 8888899999999999999999866   88999998763 


Q ss_pred             --C-ChHHHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhc
Q 024528          142 --K-DGTHHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQK  213 (266)
Q Consensus       142 --~-~~~~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~  213 (266)
                        + ++++||+||++|+++     +|+||+|||||+|||||... ++  ++.+  ++||++++++|++ |.++|+++..+
T Consensus       155 ~~l~~~~~~~~lG~al~~~i~~~~~d~rv~iIaSG~lSH~l~~~-~~--g~~~--~~~D~~f~~~l~~-d~~~l~~~~~~  228 (277)
T cd07950         155 FPLPTARRCYKLGQALRRAIESYPEDLKVAVVGTGGLSHQVHGE-RA--GFNN--TEWDMEFLDLIEN-DPESLAAMTHA  228 (277)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEcCccccCCCCC-CC--CCCC--HHHHHHHHHHHHh-CHHHHHcCCHH
Confidence              3 789999999999999     67899999999999999743 22  2333  8899999999996 99999999643


Q ss_pred             CchhhhcCCCcCcHHHHHHHHccCCC
Q 024528          214 APCAKKAHPWPDHFYPLHVAMGAAGE  239 (266)
Q Consensus       214 ~p~~~~a~p~~~h~~pl~~~lGa~~~  239 (266)
                       -....++.+.-+.+.|++++||+++
T Consensus       229 -~~~~~aG~~~~E~~~wi~~~gal~~  253 (277)
T cd07950         229 -DYATLGGAEGAEVIMWLIMRGALSD  253 (277)
T ss_pred             -HHHHHcCcchHHHHHHHHHHHhhcC
Confidence             1113344444578889999999875

Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en

>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain

Probab=100.00  E-value=3.8e-42  Score=305.39  Aligned_cols=229  Identities=21%  Similarity=0.274  Sum_probs=192.6

Q ss_pred             EEcCCCCCCCCCC--------CchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccc
Q 024528            9 FISHGSPTLSIDE--------SLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKL   80 (266)
Q Consensus         9 fisHg~P~~~~~~--------~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~   80 (266)
                      ++||+ | +++++        ..++.++++++++++.+.+||+||||||||.+....|+++..++..+||+||+  .|++
T Consensus         1 ~~ph~-p-~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~--~~~~   76 (256)
T cd07951           1 LVPHP-P-LLVPEVGGGEEAEIAATRAACEAAARRLAAARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFG--APEV   76 (256)
T ss_pred             CCCCC-C-cccccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccceeEeccCCceecchhhcC--CCcc
Confidence            47994 4 44432        13677889999999988899999999999999888999998889999999997  4889


Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCcccccCC--CCccccchhhhhhhccC-CCCCeEEEEecCCCChHHHHHHHHHhccc
Q 024528           81 KYPAPGAPELAKRVKQLLTESGFNHVNEDTK--RGLDHGAWVPLMLMYPE-ANIPVCQLSVQTRKDGTHHYNMGKALAPL  157 (266)
Q Consensus        81 ~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~--~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~~~~~~~~~lG~aL~~~  157 (266)
                      +|++++|++||++|.+.++++|++ +.....  +++|||+||||.||+|. .++|||||+++ ..+++++++||++|+++
T Consensus        77 ~~~~~~d~~la~~l~~~l~~~g~~-~~~~~~~~~~~DHg~~vpl~~l~~~~~~~pvVpi~~~-~~~~~~~~~lG~aL~~~  154 (256)
T cd07951          77 SFGVDLDLELVEEIAGEADKEGLP-VGALGERIPELDHGTLVPLYFLRKAGSDGKLVRIGLS-GLSPEELYAFGRALAAA  154 (256)
T ss_pred             eEeeeCCHHHHHHHHHHhhhcCCC-cccccCCCCCCCchhhhhHHhhcccCCcCCeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            999999999999999999999995 665444  69999999999999998 79999999995 57999999999999998


Q ss_pred             ---cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHH
Q 024528          158 ---KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAM  234 (266)
Q Consensus       158 ---~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~l  234 (266)
                         +++||+||+||++|||+....++  +..+++.+||++++++|+++|.++|+++...    ..+..+.|++.|+.+++
T Consensus       155 ~~~~~~~vlii~SgdlsH~l~~~~p~--~~~~~a~~~D~~~~~~l~~~D~~~L~~~~~~----~~~~~~~~G~~~~~~l~  228 (256)
T cd07951         155 AEELGRRVALIASGDLSHRLTEDAPG--GYDPRGPEFDAAIAEALAKGDVDALLALDPE----LAEEAGECGRRSWQVLA  228 (256)
T ss_pred             HHhcCCcEEEEEecccccccCCCCCC--CCCcchHHHHHHHHHHHHcCCHHHHHhcCHH----HHHHHHhcChHHHHHHH
Confidence               47899999999999999765432  3457899999999999999999999998532    23344679999999999


Q ss_pred             ccCCCC-CceEEecce
Q 024528          235 GAAGEN-ANAELIHTS  249 (266)
Q Consensus       235 Ga~~~~-~~~~~~~~~  249 (266)
                      |++... .+++.+.-.
T Consensus       229 ~~~~~~~~~~~~l~y~  244 (256)
T cd07951         229 GALDGASVKGEVLSYE  244 (256)
T ss_pred             HhccCCCccceeeecc
Confidence            998643 356665433

This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.

>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=2e-41  Score=303.49  Aligned_cols=226  Identities=18%  Similarity=0.246  Sum_probs=178.3

Q ss_pred             CCCcceEEEEcCCCCCCCCCC-----C----chHHHHHHHHHHHhhcCCCCEEEEE-eCCCC----CCCCeEEeccCCCc
Q 024528            1 MSTVKNTFFISHGSPTLSIDE-----S----LPARHFLKAWKEQVFTQRPNSILVI-SGHWE----TDVPTVNVVQQNDV   66 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~~~-----~----~~~~~~~~~l~~~i~~~~Pd~Ivvi-S~Hw~----~~~~~i~~~~~~~~   66 (266)
                      |++|+.++++||. |.+...+     .    .++.++++++++++++.+||+|||| |+|..    +..+.|+++...+.
T Consensus         1 M~~iv~~~~~sH~-P~~~~~~~~~~~~~~~~~~~~~a~~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~   79 (279)
T PRK13365          1 MASIIGGIGTSHV-PTIGVAYDKGKQQDPAWKPLFDGYEPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERF   79 (279)
T ss_pred             CHHHHhhhcCCCC-cccccccccCcccchHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEecccc
Confidence            8999999999998 8776511     2    4678999999999999999999999 66743    33456776654443


Q ss_pred             -ccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCCC
Q 024528           67 -IYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTRK  142 (266)
Q Consensus        67 -~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~~  142 (266)
                       ..|| |++...   ...++||++||++|++.+.++||| ++...++++|||+||||+||+|+.+   +|||||++|+..
T Consensus        80 ~~~~~-g~~~~~---~~~~~g~~eLA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~  154 (279)
T PRK13365         80 PVADE-GAGLRP---LPPIRGDVQLQAHIAECLVNDEFD-LTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQ  154 (279)
T ss_pred             ccccc-ccCCCC---CCCCCCCHHHHHHHHHHHHHcCCC-eeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEeccc
Confidence             3333 222211   137899999999999999999996 7777889999999999999999766   999999998554


Q ss_pred             ----ChHHHHHHHHHhcccc-----CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhc
Q 024528          143 ----DGTHHYNMGKALAPLK-----DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQK  213 (266)
Q Consensus       143 ----~~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~  213 (266)
                          ++++||+||++|++++     |+||+|||||+|||||....+   ++.  +++||++++++++ +|.++|+++...
T Consensus       155 ~p~~~~~~~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~~~~~---g~~--~~~~D~~f~~~l~-~d~~~l~~~~~~  228 (279)
T PRK13365        155 YPLPTARRCYRLGQALRRAIESYPEDLRVVVVGTGGLSHQIHGERS---GFN--NTEWDMEFLDRFQ-HAPETLTDLTHT  228 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCc---cCC--CHHHHHHHHHHHh-hCHHHHHcCCHH
Confidence                6899999999999994     689999999999999986432   233  3899999999997 699999999642


Q ss_pred             CchhhhcCCCcCcHHHHHHHHccCCC
Q 024528          214 APCAKKAHPWPDHFYPLHVAMGAAGE  239 (266)
Q Consensus       214 ~p~~~~a~p~~~h~~pl~~~lGa~~~  239 (266)
                       .....+..+.-+.+.|++++||+++
T Consensus       229 -~~~~~aG~~g~ei~~wi~~~gal~~  253 (279)
T PRK13365        229 -DYVRLGGAESVEQIMWLAMRGALGG  253 (279)
T ss_pred             -HHHHHcCcccHHHHHHHHHHHhhcC
Confidence             2223444445567888999999865

>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional

Probab=100.00  E-value=3e-41  Score=308.07  Aligned_cols=205  Identities=16%  Similarity=0.240  Sum_probs=170.3

Q ss_pred             hHHHHHHHHHHHhhcCCCCEEEEEeCCC-CC----CCCeEEeccCCCcccCCCCC--------------ccccccccCCC
Q 024528           24 PARHFLKAWKEQVFTQRPNSILVISGHW-ET----DVPTVNVVQQNDVIYDFYNF--------------PEQMYKLKYPA   84 (266)
Q Consensus        24 ~~~~~~~~l~~~i~~~~Pd~IvviS~Hw-~~----~~~~i~~~~~~~~~~Df~gf--------------p~~~y~~~y~~   84 (266)
                      ...++++++++++++.+||+|||||||. ..    ..+.|+++..++..+|+..|              |.-.-++++++
T Consensus        72 ~~~~a~~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  151 (335)
T PRK13363         72 ACEAAIERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETTY  151 (335)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcCC
Confidence            3456788999999999999999999975 32    35788888777788776554              22333466899


Q ss_pred             CCCHHHHHHHHHHHHhCCCCcccc----cCCCCccccchhhhhhhccCCCCCeEEEEecCCCCh-----HHHHHHHHHhc
Q 024528           85 PGAPELAKRVKQLLTESGFNHVNE----DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDG-----THHYNMGKALA  155 (266)
Q Consensus        85 ~g~~eLa~~i~~~l~~~g~d~~~~----~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~-----~~~~~lG~aL~  155 (266)
                      +||++||++|++.+.++||| ++.    ..++++|||+|+||.+++|+.++|||||++|...+|     ++||+||++|+
T Consensus       152 ~gd~eLA~~I~~~l~~~G~d-~~~~~~~~~~~glDHG~~~pl~~l~p~~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL~  230 (335)
T PRK13363        152 PVVPELARHMIRRLVDDGFD-ITALDRLPDGEGEGHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQPTPRRCIALGRSLR  230 (335)
T ss_pred             CCCHHHHHHHHHHHHHcCCC-eeeecccccccCCCccchhhHHHhcCCCCCcEEEEEeccCCCcCCCCHHHHHHHHHHHH
Confidence            99999999999999999996 663    345669999999999999999999999999975554     89999999999


Q ss_pred             cc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHH
Q 024528          156 PL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPL  230 (266)
Q Consensus       156 ~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl  230 (266)
                      ++     +|+||+|||||+||||+.            +++||+|++++|+++|.++|+++..+    .. .+++|++++|
T Consensus       231 ~~i~~~~~d~rVlIIaSGdLSH~l~------------~~efD~~~l~~l~~~D~~~L~~~~~~----~~-~aG~~eir~w  293 (335)
T PRK13363        231 RAIRSWPEDARVAVIASGGLSHFVI------------DEELDRLIIDAIRAKDFAALASLDEA----IL-QSGTSEIKNW  293 (335)
T ss_pred             HHHHhcCcCCCEEEEEeCccccCCc------------HHHHHHHHHHHHHcCCHHHHHccCHH----HH-HhCchhHHHH
Confidence            98     468999999999999973            48999999999999999999999654    33 5778999999


Q ss_pred             HHHHccCCC-CCceEEe
Q 024528          231 HVAMGAAGE-NANAELI  246 (266)
Q Consensus       231 ~~~lGa~~~-~~~~~~~  246 (266)
                      ++++||+++ +.+.+++
T Consensus       294 i~~~GAl~~~~~~~evl  310 (335)
T PRK13363        294 IAVAGALDDAGLDMTWV  310 (335)
T ss_pred             HHHHHhhccCCCCceEE
Confidence            999999976 2345554

>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional

Probab=100.00  E-value=1.2e-40  Score=302.42  Aligned_cols=223  Identities=18%  Similarity=0.269  Sum_probs=185.9

Q ss_pred             CCCcceEEEEcCCCCCCCCCCC-----chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEeccCCCcccCC
Q 024528            1 MSTVKNTFFISHGSPTLSIDES-----LPARHFLKAWKEQVFTQRPNSILVISGHWETD-----VPTVNVVQQNDVIYDF   70 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~~~~-----~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-----~~~i~~~~~~~~~~Df   70 (266)
                      |+.+  ++++||. |.+..++.     ....++++++++++++.+||+||||||||.+.     .+.|+++......+||
T Consensus         1 m~~~--~~~~sH~-P~~~~~~~~~~~~~~v~~a~~~l~~~l~~~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~   77 (313)
T PRK13370          1 MTAA--LVCLSHS-PLVGYVDPAQEVLAEVNAVIAAAREFVAAFDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDY   77 (313)
T ss_pred             CCce--eeecCCC-CccCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcccccccccCCceEeccCCCcCccc
Confidence            6643  3889997 87765442     25668899999999999999999999965544     5689888888899999


Q ss_pred             CCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-CCCCeEEEEecC----CCChH
Q 024528           71 YNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQT----RKDGT  145 (266)
Q Consensus        71 ~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~----~~~~~  145 (266)
                      .+|+.       +.++|++||++|.+.+.+.||| ++...++++|||+|+||++|+|+ .++|||||++|+    ..+++
T Consensus        78 ~~~~g-------~~~~d~eLA~~i~~~~~~~g~d-~a~~~~~~lDHG~~vPL~~l~~~~~~~pVVpI~vn~~~~p~~s~~  149 (313)
T PRK13370         78 GTAAG-------PLPVPSDLAEALAEAVLDSGID-VAVSYRMQVDHGFAQPLEFLLGGLDAYPVIPVFINSVAAPLPPFR  149 (313)
T ss_pred             ccCCC-------CCCCCHHHHHHHHHHhHhcCCC-hhhcCCcCCCEeHHHHHHHhcCCCCCceEEEEeecCCCCCcCCHH
Confidence            99876       5789999999999999999997 77788999999999999999987 459999999986    35679


Q ss_pred             HHHHHHHHhcccc---CCCeEEEEecCCcccccccc--------------------------------------CCCCCc
Q 024528          146 HHYNMGKALAPLK---DEGVLIIGSGSATHNLRALQ--------------------------------------FDGDSV  184 (266)
Q Consensus       146 ~~~~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~--------------------------------------~~~~~~  184 (266)
                      +|++||++|+++.   ++||+|||||||||++....                                      .++.++
T Consensus       150 r~~~lG~aI~~ai~~~d~rVlvIaSGdLSH~~~~~~~~~~d~~~~erl~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~  229 (313)
T PRK13370        150 RVRLLGEAVGRFLATLDKRVLFLGSGGLSHDPPVPELATADPEVRERLIAGRNPTPEERAARQQRVIAAARIFAAGQSAL  229 (313)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEeCCCcCCCchHhHhhccHHHHHHHHccCCccHHHHHHHHhhHHhhhhhcccCcccC
Confidence            9999999999874   79999999999999841111                                      122356


Q ss_pred             chhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCc--HHHHHHHHccC
Q 024528          185 ASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDH--FYPLHVAMGAA  237 (266)
Q Consensus       185 ~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h--~~pl~~~lGa~  237 (266)
                      .+.+++||+++++.+++||.++|.+++.+   .....++.|+  +++|++|+||.
T Consensus       230 ~p~~~~~D~~~l~~l~~gd~~~l~~~~~~---~~~~~aG~~g~E~r~w~~~~gal  281 (313)
T PRK13370        230 HPLNPEWDRAFLDLLESGDLAALDAWTNE---EITREAGKSAHEIRTWVAAFAAL  281 (313)
T ss_pred             CCCCHHHHHHHHHHHHcCCHHHHhcCCHH---HHHHHhccchHHHHHHHHHHHHH
Confidence            78999999999999999999999999644   2333477888  99999999998

>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate

Probab=100.00  E-value=2.1e-40  Score=301.95  Aligned_cols=200  Identities=19%  Similarity=0.237  Sum_probs=167.9

Q ss_pred             hHHHHHHHHHHHhhcCCCCEEEEEeC-CCCC----CCCeEEeccCCCcccCCCC----------------CccccccccC
Q 024528           24 PARHFLKAWKEQVFTQRPNSILVISG-HWET----DVPTVNVVQQNDVIYDFYN----------------FPEQMYKLKY   82 (266)
Q Consensus        24 ~~~~~~~~l~~~i~~~~Pd~IvviS~-Hw~~----~~~~i~~~~~~~~~~Df~g----------------fp~~~y~~~y   82 (266)
                      ...++++++++++++.+||+|||||| |.+.    ..+.|+++..++..+|+..                .|+    +.+
T Consensus        70 ~~~~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~  145 (328)
T cd07366          70 RCQAALDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEAAAGYAPD----EAR  145 (328)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhccccccccccccccccCCC----CCc
Confidence            44577889999999999999999999 6543    3468888877777777542                233    556


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCcccc----cCCCCccccchhhhhhhccCCCCCeEEEEecCCC-----ChHHHHHHHHH
Q 024528           83 PAPGAPELAKRVKQLLTESGFNHVNE----DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRK-----DGTHHYNMGKA  153 (266)
Q Consensus        83 ~~~g~~eLa~~i~~~l~~~g~d~~~~----~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~-----~~~~~~~lG~a  153 (266)
                      +++||++||++|++.+.++||| ++.    ..++++|||.|+|+.+++|+.++||||||+|...     ++++||+||++
T Consensus       146 ~~~gd~eLA~~I~~~l~~~G~d-v~~~~~~~~~~~lDHG~~~~l~~~~p~~~iPVVpisin~~~~p~~ps~~r~y~lG~a  224 (328)
T cd07366         146 TYPCHPELARHLIKHTVADGFD-VAALDHLPDTVGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSARRCFEFGRA  224 (328)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC-eeeecccCcccCCCcchhhHHHHhcCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999996 665    3345789999999999999999999999999854     66999999999


Q ss_pred             hccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHH
Q 024528          154 LAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFY  228 (266)
Q Consensus       154 L~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~  228 (266)
                      |+++     +|+||+|||||+|||||            ++++||+|+++++++||.++|++++.+    . ..+++|+++
T Consensus       225 L~~ai~~~~~d~rV~IIaSGgLSH~l------------~~~eFD~~~l~~l~~gD~~~L~~~~~~----~-~~aG~~elr  287 (328)
T cd07366         225 VARAIRSWPGDARVGVIASGGLSHFV------------IDEEFDRRILDALRNRDAEFLSSLPEA----H-LQSGTSELK  287 (328)
T ss_pred             HHHHHHhcCCCCCEEEEEeCccccCC------------ChHHHHHHHHHHHHcCCHHHHHcCCHH----H-HhccchhHH
Confidence            9998     47999999999999998            459999999999999999999999654    2 346789999


Q ss_pred             HHHHHHccCCCC-CceEE
Q 024528          229 PLHVAMGAAGEN-ANAEL  245 (266)
Q Consensus       229 pl~~~lGa~~~~-~~~~~  245 (266)
                      +|++++||+++. .++++
T Consensus       288 ~wi~~~GAl~~~~~~~~v  305 (328)
T cd07366         288 NWIAAAGALDDLGLKMTS  305 (328)
T ss_pred             HHHHHHHhhcCCCcceeE
Confidence            999999999653 23444

3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.

>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate

Probab=100.00  E-value=4.6e-40  Score=298.25  Aligned_cols=225  Identities=19%  Similarity=0.277  Sum_probs=186.5

Q ss_pred             CCCcceEEEEcCCCCCCCCCCC-----chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEeccCCCcccCC
Q 024528            1 MSTVKNTFFISHGSPTLSIDES-----LPARHFLKAWKEQVFTQRPNSILVISGHWETD-----VPTVNVVQQNDVIYDF   70 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~~~~-----~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-----~~~i~~~~~~~~~~Df   70 (266)
                      |++.  ++++||. |.+...++     .+..++++++++++++.+||+||||||||...     .+.|+++......+||
T Consensus         1 m~~~--~~~~sH~-p~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~   77 (310)
T cd07365           1 MTVA--LICMSHS-PLLGFNDPAPEVVAEVDAAFAAARAFVAAFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDY   77 (310)
T ss_pred             CCce--eeeeCCC-cccCCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccCCceEeeccCcccccc
Confidence            5543  4899997 86644321     25668899999999999999999999987653     3688888778899999


Q ss_pred             CCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-CCCCeEEEEecCC----CChH
Q 024528           71 YNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQTR----KDGT  145 (266)
Q Consensus        71 ~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~----~~~~  145 (266)
                      .+|+.       +.++|++||++|.+.+.+.||| ++...++++|||+||||+||++. .++|||||++|..    .+++
T Consensus        78 ~~p~g-------~~~~d~eLA~~L~~~~~~~g~d-~a~~~~~~lDHg~~VPL~fL~~~~~~~pVVPI~vn~~~~P~~s~~  149 (310)
T cd07365          78 GTLAG-------PLNVPRDLAEDLARHVLDSGID-VAISHRMQVDHGFTQPLEELFGGLDRYPVIPIFVNSVAPPLAPMR  149 (310)
T ss_pred             ccCCC-------CCCCCHHHHHHHHHhhhhcCCC-hhhccCCCCCcchHhhHHHHhCCCCCCeEEEEEecCCCCCCCCHH
Confidence            99876       5678999999999999999995 88888899999999999999987 4699999999875    5678


Q ss_pred             HHHHHHHHhcccc---CCCeEEEEecCCcccccccc--------------------------------------CCCCCc
Q 024528          146 HHYNMGKALAPLK---DEGVLIIGSGSATHNLRALQ--------------------------------------FDGDSV  184 (266)
Q Consensus       146 ~~~~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~--------------------------------------~~~~~~  184 (266)
                      +|++||++|+++.   ++||+|||||||||++....                                      .++.++
T Consensus       150 r~~~lG~al~~ai~~~d~rV~VIaSGdLSH~~~~~~~~~~d~~~~~~l~~~d~~~~~~~~~~~~~i~~~~~~~~~gp~~~  229 (310)
T cd07365         150 RARALGEAVGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVAERLIAGRNPTPEARAARQQRVIAAAKAFAAGDSTL  229 (310)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEcCcccCCCchhhhhcccHHHHHHHHhcccchHHHHHHHHhhhhhhhhhcccCcccC
Confidence            9999999999974   68999999999999941111                                      123356


Q ss_pred             chhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcH--HHHHHHHccCCC
Q 024528          185 ASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHF--YPLHVAMGAAGE  239 (266)
Q Consensus       185 ~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~--~pl~~~lGa~~~  239 (266)
                      .|.+++||+++++++++||.++|++++.+   ...+.++.|++  ++|++|+||...
T Consensus       230 ~p~~~~fD~~~l~~~~~gd~~~l~~~~~~---~~~~~aG~~g~Ei~~w~~~~gal~~  283 (310)
T cd07365         230 MPLNPEWDRAFLDLLASGDLAALDAMTND---EIAAQAGNSAHEVRTWVAAFAALAA  283 (310)
T ss_pred             CCCCHHHHHHHHHHHHcCCHHHHHcCCHH---HHHHHhccccHHHHHHHHHHHHhhh
Confidence            78999999999999999999999999532   24567778888  999999999864

2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca

>PRK13373 putative dioxygenase; Provisional

Probab=100.00  E-value=7.2e-38  Score=281.95  Aligned_cols=236  Identities=19%  Similarity=0.209  Sum_probs=185.4

Q ss_pred             CCCcceEEEEcCCCCCC-CCCC-C-----chHHHHHHHHHHHhhcCCCCEEEEEeC-CCCC----CCCeEEeccCCCccc
Q 024528            1 MSTVKNTFFISHGSPTL-SIDE-S-----LPARHFLKAWKEQVFTQRPNSILVISG-HWET----DVPTVNVVQQNDVIY   68 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~-~~~~-~-----~~~~~~~~~l~~~i~~~~Pd~IvviS~-Hw~~----~~~~i~~~~~~~~~~   68 (266)
                      |++++..+++||. |.+ ...+ .     .+..++++++++++++.+||+||||++ ||..    ..++|+++...+..+
T Consensus         1 Ma~iv~~~~~SHs-Pl~~g~~d~p~~~~~~~v~~a~~~ir~~i~e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g   79 (344)
T PRK13373          1 MAKIVAGIGMSHA-PGALGWPDAPSASVRRRLLQAADRLGRSLDAARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPG   79 (344)
T ss_pred             ChHHHhhhcCCCC-CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhhccccCCceEEEecccccC
Confidence            8999989999997 866 3333 1     256688999999999999999999955 9865    357788877666777


Q ss_pred             CCCCCccc-cccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCC----C
Q 024528           69 DFYNFPEQ-MYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRK----D  143 (266)
Q Consensus        69 Df~gfp~~-~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~----~  143 (266)
                      |+.++-.. -....-+++|+++||++|++.+.++||| ++.+.++.+|||+++||.+|+|+..+|||||.+|+..    +
T Consensus        80 ~~~~~g~~~~~~~~~~~~g~~elA~~l~~~l~~~gfD-va~s~~m~vDHg~~vPl~~l~~~~~~pvVPV~vN~~~~P~p~  158 (344)
T PRK13373         80 PATQWLEALRLTRQERFGGAPEIAERLLRSLVADGYD-VARMGEIEYGNNLMVPWKLMAPRSAPAIIPVFTNVFSPPVMP  158 (344)
T ss_pred             CccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCC-eeeeeceeCCcceeeeHHHhCCCCCCCeEEEEEecccCCCCC
Confidence            76642100 0011237899999999999999999998 8889999999999999999999988899999999864    4


Q ss_pred             hHHHHHHHHHhcccc-----CCCeEEEEecCCcccccccc----------------------------------------
Q 024528          144 GTHHYNMGKALAPLK-----DEGVLIIGSGSATHNLRALQ----------------------------------------  178 (266)
Q Consensus       144 ~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH~l~~~~----------------------------------------  178 (266)
                      .+||++||++|+++.     |+||+|||||+|||++....                                        
T Consensus       159 ~~R~~~lG~ai~~ai~~~~~d~rV~~~~sGgLSH~p~~~~~~~p~~~~~l~~~~~~q~~G~~~~~r~~~~~r~~~~~~i~  238 (344)
T PRK13373        159 YRRAYAFGAALRNAAEALDADLRVAFMATGGMSHWPPFWNDSSPEADAFLARMKAFQTHGKSVLEKDPHLLRDLAAYEIE  238 (344)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEEecCcccCCCcccccCchhhhhhhhccccccccCCCchhhhhhhhhhhhhhhhh
Confidence            699999999999984     58999999999999753200                                        


Q ss_pred             ------CCCCCcch-hHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCC
Q 024528          179 ------FDGDSVAS-WASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGE  239 (266)
Q Consensus       179 ------~~~~~~~~-~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~  239 (266)
                            ++.+..++ .+++||+++++.+++||.++|.++..+ ...+.+..+.-.++.|+.+.||+++
T Consensus       239 ~~~r~~~~~~~~~~~iN~ewD~~fLd~l~~gD~e~L~~~t~~-e~~~~~G~gg~Ei~~Wiaa~gAlg~  305 (344)
T PRK13373        239 MAERNQWPLNSPHPLVNEAWDRQMLDALARGDVEFLCGLQYE-DVKRDGGHGGQEIINWIELMGAMKG  305 (344)
T ss_pred             HHHHhhccccccccccCHHHHHHHHHHHHcCCHHHHHcCCHH-HHHHHcCcccHHHHHHHHHHHhccC
Confidence                  00011224 789999999999999999999999542 2334444445579999999999864

>COG3885 Uncharacterized conserved protein [Function unknown]

Probab=99.92  E-value=2e-24  Score=183.09  Aligned_cols=218  Identities=17%  Similarity=0.211  Sum_probs=171.7

Q ss_pred             ceEEEEcCCCCCCCCCCC---chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCcccccccc
Q 024528            5 KNTFFISHGSPTLSIDES---LPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLK   81 (266)
Q Consensus         5 ~~~~fisHg~P~~~~~~~---~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~   81 (266)
                      ...+.+||| +-+..+++   +.+.++++++++.+  ..++++||||||.......+.+.-...+++-++.+-..  .++
T Consensus         3 ngiyv~PHg-dEii~~~~~e~~~l~kA~k~i~~~~--~~seT~VvIsPHgi~ldd~iaviys~~l~g~~~~~k~~--~i~   77 (261)
T COG3885           3 NGIYVIPHG-DEIIDPEDEESRKLNKAIKEIASDD--KGSETYVVISPHGIRLDDYIAVIYSEYLSGLPYRTKHH--PIR   77 (261)
T ss_pred             ccEEeccCC-ccccCCchhHHHHHHHHHHHHHccc--CCCceEEEEcCCceeeechhhHHhHHhhcccccccccC--cch
Confidence            456789998 66655443   46677777777764  34999999999987666555554333344433333221  245


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCccc---c------cCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHH
Q 024528           82 YPAPGAPELAKRVKQLLTESGFNHVN---E------DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGK  152 (266)
Q Consensus        82 y~~~g~~eLa~~i~~~l~~~g~d~~~---~------~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~  152 (266)
                      ..+..|.+||+.|.+..+.+ | |+.   .      ..+..||||..+||+|+.   ...||.+.... ++-+..++||.
T Consensus        78 ~ey~~dreLa~~I~~~a~g~-~-p~v~it~~~lkg~~s~~~Ld~G~~IPL~Flk---~rrIV~lt~ar-l~~~~l~~Fg~  151 (261)
T COG3885          78 KEYKNDRELADKIYEEAKGQ-F-PLVCITFSILKGNYSRCPLDWGSLIPLYFLK---RRRIVLLTPAR-LSREILVKFGD  151 (261)
T ss_pred             hhhhccHHHHHHHHHHhccC-C-ceEEEechhhcCcCCccccccccccchhhcc---ceeEEEechhh-ccHHHHHHHHH
Confidence            56678999999999998765 6 443   1      234689999999999994   46799988865 99999999999


Q ss_pred             Hhcccc---CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHH
Q 024528          153 ALAPLK---DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYP  229 (266)
Q Consensus       153 aL~~~~---d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~p  229 (266)
                      .|.++.   ++||.+|.|++.+|.+.+.+|+  ++.+.+++||+.+++.+.+||.+.|++++.+    ..+.+.+|.|++
T Consensus       152 ~l~~~le~~~~ki~lIiSaD~aHth~edGPY--GYs~~se~yDk~iv~~lks~n~e~l~~iD~~----~I~~Akpdsy~s  225 (261)
T COG3885         152 NLGKALEEYERKISLIISADHAHTHDEDGPY--GYSEESEEYDKIIVDSLKSGNFEALLSIDDE----VIAEAKPDSYWS  225 (261)
T ss_pred             HHHHHHHHhhcceEEEEecccccccCCCCCC--CCChhHHHHHHHHHHHhcccCHHHHHhccHH----HHHhcCCchHHH
Confidence            988874   5899999999999999999887  5789999999999999999999999999766    788999999999


Q ss_pred             HHHHHccCCC
Q 024528          230 LHVAMGAAGE  239 (266)
Q Consensus       230 l~~~lGa~~~  239 (266)
                      +++++|....
T Consensus       226 lli~lgiLe~  235 (261)
T COG3885         226 LLILLGILEE  235 (261)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility

Probab=99.88  E-value=2.4e-21  Score=173.04  Aligned_cols=204  Identities=19%  Similarity=0.175  Sum_probs=151.0

Q ss_pred             eEEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCCC
Q 024528            6 NTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAP   85 (266)
Q Consensus         6 ~~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~   85 (266)
                      -++-+||.+....   ..-+..+++.+.    ..+||+|||++||-......+.+.........++           +.+
T Consensus        37 ~~~i~PHagy~ys---G~~aa~ay~~l~----~~~p~~vvilgP~H~~~~~~~~~~~~~~~~TPlG-----------~v~   98 (266)
T cd07361          37 KAIIVPHAGYVYS---GPVAAHAYAALD----PGKPKRVVILGPSHTGYGRGCALSSAGAWETPLG-----------DVP   98 (266)
T ss_pred             eEEEeCCCCcccc---HHHHHHHHHHhc----cCCCCEEEEECCCCCCCCCceeeCCCCCeeCCCc-----------CCc
Confidence            3567788643321   122345566654    5789999999995444434444443333222221           677


Q ss_pred             CCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-CCCCeEEEEecCCCChHHHHHHHHHhccc-cCCCeE
Q 024528           86 GAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQTRKDGTHHYNMGKALAPL-KDEGVL  163 (266)
Q Consensus        86 g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~~~~~~~~~lG~aL~~~-~d~~v~  163 (266)
                      .|.+++++|.+..   +++ .........|||+-|||.||..- .++|||||.+ ...++++++++|++|+++ .++|++
T Consensus        99 vd~~l~~~L~~~~---~~~-~~~~~~~~~EHs~EvqLpfLq~~~~~~~iVPi~v-g~~~~~~~~~~g~~l~~~~~~~~~~  173 (266)
T cd07361          99 VDRELVEELLKLG---GFI-VDDELAHEEEHSLEVQLPFLQYLLPDFKIVPILV-GDQSPEAAEALAEALSKYLLDPDTL  173 (266)
T ss_pred             cCHHHHHHHHhcC---Ccc-ccCcchhhhhceeeeHHHHHHHHcCCCeEEEEEe-CCCCHHHHHHHHHHHHHHhcCCCeE
Confidence            8999999997654   553 33335678999999999997543 4899999999 457999999999999997 579999


Q ss_pred             EEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCCC--C
Q 024528          164 IIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGEN--A  241 (266)
Q Consensus       164 iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~--~  241 (266)
                      ||+|||+||++..         +.+++||+.++++|+++|.+.++++..+      ...+.|++.|+.++++++...  .
T Consensus       174 iV~SsDlSH~~~~---------~~a~~~D~~~i~~i~~~d~~~~~~~~~~------~~~~~CG~~~i~~~l~~~~~~~~~  238 (266)
T cd07361         174 IVISSDFSHYGPR---------ESAERLDRKAIEAILALDPEGFYEYLRE------TGNTACGRGPIAVLLEAAKELGAL  238 (266)
T ss_pred             EEEeCCCCCcCCH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHh------cCCceECHHHHHHHHHHHHhcCCC
Confidence            9999999998644         6789999999999999999999998543      246799999999999987643  3


Q ss_pred             ceEEec
Q 024528          242 NAELIH  247 (266)
Q Consensus       242 ~~~~~~  247 (266)
                      +++++.
T Consensus       239 ~~~ll~  244 (266)
T cd07361         239 KAELLD  244 (266)
T ss_pred             EEEEee
Confidence            566653

This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia

>PRK00782 hypothetical protein; Provisional

Probab=99.78  E-value=4.5e-18  Score=152.09  Aligned_cols=174  Identities=19%  Similarity=0.178  Sum_probs=129.4

Q ss_pred             CCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccch
Q 024528           40 RPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAW  119 (266)
Q Consensus        40 ~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~  119 (266)
                      .||+|||++||-......+.+.... ...     |=      .+.+.|.+++++|...+    +  ...+.....||+.-
T Consensus        63 ~p~~vvilGp~H~~~~~~~av~~~~-~~T-----Pl------G~v~vD~~l~~~L~~~~----~--~~~~~ah~~EHSiE  124 (267)
T PRK00782         63 EAETFVIIGPNHTGLGSPVAVSPEG-WKT-----PL------GDVEVDEELAKALASGI----I--DLDELAHKYEHSIE  124 (267)
T ss_pred             CCCEEEEECCCCCCCCCCeEEecCc-ccC-----CC------cCCcCCHHHHHHHHHhh----h--ccchhhhhhhceEE
Confidence            4999999999444455556554322 111     21      16788999999997222    1  11123357899999


Q ss_pred             hhhhhhccC--CCCCeEEEEecCCCChHHHHHHHHHhcccc---CCCeEEEEecCCccccccccCCCCCcchhHHHHHHH
Q 024528          120 VPLMLMYPE--ANIPVCQLSVQTRKDGTHHYNMGKALAPLK---DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNW  194 (266)
Q Consensus       120 vPL~~l~p~--~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~  194 (266)
                      |+|-||..-  .++|||||.+ ...++++++++|++|+++.   +++++||+|||+||+..         .+.+++||+.
T Consensus       125 vqlPFLq~~~~~~~~iVPI~v-g~~~~~~~~~lg~~L~~~~~~~~~~vliIaSsDlSH~~~---------~~~a~~~D~~  194 (267)
T PRK00782        125 VQLPFLQYLFGKDFKIVPICL-GMQDEETAREVGEAIAEAIEELGKKVVVIASSDFTHYEP---------AERAKEKDMI  194 (267)
T ss_pred             ecHHHhhHhhcCCCeEEEEEc-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCC---------HHHHHHHHHH
Confidence            999666443  4899999998 4688999999999999863   67999999999999753         3678999999


Q ss_pred             HHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCCC--CceEEec
Q 024528          195 LKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGEN--ANAELIH  247 (266)
Q Consensus       195 v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~--~~~~~~~  247 (266)
                      ++++|+++|.+.|.+...      ..+.+.|++.|+.++++++..-  .+++.+.
T Consensus       195 ~i~~I~~~d~~~l~~~~~------~~~~~~CG~~pi~~~l~~~~~~g~~~~~ll~  243 (267)
T PRK00782        195 LIEAILDLDVDGFYDEIY------RMNATACGYGPIAAMMTYSKKLGASKAELLH  243 (267)
T ss_pred             HHHHHHcCCHHHHHHHHH------hcCCceECHHHHHHHHHHHHhcCCCeEEEee
Confidence            999999999999987632      3456799999999999887542  2466654

>COG1355 Predicted dioxygenase [General function prediction only]

Probab=99.10  E-value=4.3e-09  Score=93.01  Aligned_cols=176  Identities=18%  Similarity=0.231  Sum_probs=125.7

Q ss_pred             CCCCEEEEEeC-CCCCCCCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccc
Q 024528           39 QRPNSILVISG-HWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHG  117 (266)
Q Consensus        39 ~~Pd~IvviS~-Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG  117 (266)
                      .+||+||+++| |.- .+..+.+...       ..+--.+    -+.+.|.|+++.|.+.   .++. .-......-.|+
T Consensus        73 ~~~~~vVIlGPnHtg-~g~~vsv~~~-------g~w~TPL----G~v~vD~e~~~~l~~~---~~~~-~~D~~ah~~EHS  136 (279)
T COG1355          73 GEPDTVVILGPNHTG-LGSPVSVSPE-------GEWETPL----GDVKVDSELAEELVKH---SGII-DLDELAHLYEHS  136 (279)
T ss_pred             CCCCEEEEECCCCCC-CCCceEEecC-------CccccCC----CCeeeCHHHHHHHHHh---cCCC-Cchhhhhhhhce
Confidence            79999999999 753 3334444321       1111111    2667799999998876   3441 112233455777


Q ss_pred             chhh---hhhhccCCCCCeEEEEecCCCChHHHHHHHHHhcccc-CC-CeEEEEecCCccccccccCCCCCcchhHHHHH
Q 024528          118 AWVP---LMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLK-DE-GVLIIGSGSATHNLRALQFDGDSVASWASEFD  192 (266)
Q Consensus       118 ~~vP---L~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~-d~-~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD  192 (266)
                      +=|=   |.+++++ +..||||.+ ...+.+...++|++|.++. |. +++||+|=|.+|...         ....+++|
T Consensus       137 iEvQlPFLqy~f~~-~fKIVPi~m-~~q~~~~a~~ig~~i~k~i~e~~~~liIaSSDf~HYep---------~~~~~~~D  205 (279)
T COG1355         137 IEVQLPFLQYLFGD-EFKIVPICM-GMQDKEVARDIGRAIAKVIKELGDALIIASSDFTHYEP---------QDIVRRKD  205 (279)
T ss_pred             EEeehHHHHHHccC-CcEEEeEEE-ecccHHHHHHHHHHHHHHHhhcCCeEEEEecCccccCc---------hhhhhhhH
Confidence            6654   4445665 899999999 6789999999999999986 44 599999999999831         25678999


Q ss_pred             HHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCC--CCCceEEec
Q 024528          193 NWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAG--ENANAELIH  247 (266)
Q Consensus       193 ~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~--~~~~~~~~~  247 (266)
                      +.++++|++.|.+.+..+.+      ..+.+.|++-|+.+++=++.  +..+.++++
T Consensus       206 ~~~I~~I~~~d~~g~~~~~~------~~n~t~CG~gpi~~~l~~~k~~g~~~~~ll~  256 (279)
T COG1355         206 RILIKAILALDLDGFYELLE------RTNATMCGYGPIAVLLEASKKLGAKEAKLLD  256 (279)
T ss_pred             HHHHHHHHhcCHHHHHHHHH------hcCCccccccHHHHHHHHHHHcCcccceeec
Confidence            99999999999999998843      46778999999988876542  223456554

>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life

Probab=98.96  E-value=2.5e-09  Score=96.17  Aligned_cols=186  Identities=20%  Similarity=0.239  Sum_probs=107.3

Q ss_pred             cCCCCEEEEEeC-CCCCCCCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccc
Q 024528           38 TQRPNSILVISG-HWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDH  116 (266)
Q Consensus        38 ~~~Pd~IvviS~-Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDH  116 (266)
                      ..+|++|||++| |.... ..+.+... ..    +.-|=      .+.+.|.+++++|.+....  +  ...+.....+|
T Consensus        59 ~~~~~~vvilGpsH~~~~-~~~~~~~~-~~----~~TPl------G~v~vD~e~~~~L~~~~~~--~--~~~~~~h~~EH  122 (276)
T PF01875_consen   59 ESKPKRVVILGPSHTGYG-DGIAVSPF-DS----WETPL------GEVPVDSELAEELAKNFPF--F--EFDDEAHEEEH  122 (276)
T ss_dssp             TTT--EEEEEEE-SSS---SSEEE-SS-SE----E--SS--------EEB-HHHHHHHHHTT-E-----EE--HHHHH--
T ss_pred             hcCCCEEEEECCCccCCC-CCeEeccC-Ce----EECCC------cccccCHHHHHHHHhcCCC--c--ccchhhccccC
Confidence            468999999988 86433 33433321 11    11121      2666799999888765321  2  11222236688


Q ss_pred             cchhhhhh---hccC-CCCCeEEEEecCCCChHHHHHHHHHhcccc-CCCeEEEEecCCccccccccCCCCCcchhHHH-
Q 024528          117 GAWVPLML---MYPE-ANIPVCQLSVQTRKDGTHHYNMGKALAPLK-DEGVLIIGSGSATHNLRALQFDGDSVASWASE-  190 (266)
Q Consensus       117 G~~vPL~~---l~p~-~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~-d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~e-  190 (266)
                      ..=|-|=|   ++|+ .+++||||.+ ...+.+...++|++|.++. |++++||+|-|+||.....+.. ....+..++ 
T Consensus       123 SlEvqlPFLq~~~~~~~~~~IVPI~v-g~~~~~~~~~~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~-~~~~~~~~~~  200 (276)
T PF01875_consen  123 SLEVQLPFLQYLFPDRRDFKIVPILV-GDQSPETAKELAEALAEYLKDEGTLIVASSDFSHYGPRFGDA-PKPEEIAEKI  200 (276)
T ss_dssp             TTGGGHHHHHHHTGGGTS-EEEEEEE--S--HHHHHHHHHHHHHHHTSTTEEEEEE----EEBGGGT---GGGSSHHHHH
T ss_pred             cEEEHHHHHHHHhccCCceEEEEEEe-cCCCHHHHHHHHHHHHHHHcCCCEEEEEeCccccccccccCC-CCCHHHHHHH
Confidence            88777555   4577 6799999999 5678888999999999974 6789999999999987555421 112234444 


Q ss_pred             --HHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCCC--CceEEec
Q 024528          191 --FDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGEN--ANAELIH  247 (266)
Q Consensus       191 --FD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~--~~~~~~~  247 (266)
                        .|+..+++|+++|.+.+.+.-+      ..+.+-|++-|+.+++-++...  .+++.++
T Consensus       201 ~~~D~~~i~~i~~~d~~~~~~~~~------~~~~t~CG~~pi~~~l~~~~~~~~~~~~ll~  255 (276)
T PF01875_consen  201 EALDREAIEAIEALDPEGFYEYLK------ETNNTACGRGPIAVLLEAAKALGAWKGELLD  255 (276)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHH------HH----TTHHHHHHHHHHHHHHHCEEEEEEE
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHH------HcCCceechHHHHHHHHHHHHcCCCeEEEee
Confidence              5999999999999999988632      3455689999999988765431  3555543

The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.

>KOG3086 consensus Predicted dioxygenase [General function prediction only]

Probab=96.27  E-value=0.023  Score=49.89  Aligned_cols=144  Identities=15%  Similarity=0.143  Sum_probs=98.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhCC-CCcccccCCCCccccchhhhhhhc----cC-CCCCeEEEEecCCCChHHHHHHHHHhc
Q 024528           82 YPAPGAPELAKRVKQLLTESG-FNHVNEDTKRGLDHGAWVPLMLMY----PE-ANIPVCQLSVQTRKDGTHHYNMGKALA  155 (266)
Q Consensus        82 y~~~g~~eLa~~i~~~l~~~g-~d~~~~~~~~~lDHG~~vPL~~l~----p~-~~iPvV~vs~~~~~~~~~~~~lG~aL~  155 (266)
                      ++++.|.++-++    |.+.| |+.+..+ .-.-.|..-+=|-++-    +. -.+.||||-+ +.++++.--..|+.|.
T Consensus        99 gdLkVD~~i~~e----L~~tg~F~~Mdl~-tde~EHSiEM~lP~lak~l~~~~~~~kivPilv-g~ls~~~e~~~g~lls  172 (296)
T KOG3086|consen   99 GDLKVDQKICKE----LWATGMFERMDLD-TDEAEHSIEMQLPYLAKVLESRKDTVKIVPILV-GALSPSVEQCYGKLLS  172 (296)
T ss_pred             ccccccHHHHHH----HHHcCCccccccc-cccchhhhhhhhHHHHHHHhhcCceEEEEeeEe-cccChHHHHHHHHHHH
Confidence            466667665554    44555 4322211 1223465544443332    22 2478999999 6799999999999999


Q ss_pred             ccc-CCCeEEEEecCCccccccccCC--C---CCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHH
Q 024528          156 PLK-DEGVLIIGSGSATHNLRALQFD--G---DSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYP  229 (266)
Q Consensus       156 ~~~-d~~v~iiaSG~lSH~l~~~~~~--~---~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~p  229 (266)
                      +.. |.+=++|-|-|--||=+..+..  .   .+...--+..|+.=++.|+..+.+++-++-.      .-+.|.|+=-|
T Consensus       173 ~Yi~Dp~NlFvvSSDFCHWG~RF~yt~Yd~s~~~I~~sIe~lDk~gM~iiet~~pdaf~~YLk------~~~NTICGr~P  246 (296)
T KOG3086|consen  173 KYIKDPSNLFVVSSDFCHWGRRFSYTYYDHSQGPIYESIENLDKQGMKIIETLDPDAFSEYLK------KTQNTICGRHP  246 (296)
T ss_pred             HHhcCccceEEEeccccccccccccccccCCCchHHHHHHHHHHhhhhhhhcCChHHHHHHHH------HhCCccccCcc
Confidence            975 7777888899999987665431  1   0112333678999999999999999888743      45778999999


Q ss_pred             HHHHHccC
Q 024528          230 LHVAMGAA  237 (266)
Q Consensus       230 l~~~lGa~  237 (266)
                      +-++|+|.
T Consensus       247 I~v~l~a~  254 (296)
T KOG3086|consen  247 ISVILSAL  254 (296)
T ss_pred             HHHHHHHH
Confidence            99999864

>PRK09271 flavodoxin; Provisional

Probab=86.43  E-value=4.5  Score=33.05  Aligned_cols=79  Identities=16%  Similarity=0.206  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC---CCChHHHHHHHHHhccc--cCCCe
Q 024528           88 PELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT---RKDGTHHYNMGKALAPL--KDEGV  162 (266)
Q Consensus        88 ~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~---~~~~~~~~~lG~aL~~~--~d~~v  162 (266)
                      ..+|+.|++.+++.|++ +... +....+  ..+.  ...-.+.-+|-+..++   +..|.....|=+.|...  ..+++
T Consensus        15 e~~A~~ia~~l~~~g~~-v~~~-~~~~~~--~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~   88 (160)
T PRK09271         15 REVAREIEERCEEAGHE-VDWV-ETDVQT--LAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNV   88 (160)
T ss_pred             HHHHHHHHHHHHhCCCe-eEEE-eccccc--cccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeE
Confidence            56799999999999984 4321 111111  0011  0001234555555532   34455555555555553  35789


Q ss_pred             EEEEecCCcc
Q 024528          163 LIIGSGSATH  172 (266)
Q Consensus       163 ~iiaSG~lSH  172 (266)
                      +++|||+.+.
T Consensus        89 avfgsgd~~~   98 (160)
T PRK09271         89 AVFGTGETQW   98 (160)
T ss_pred             EEEecCCCCc
Confidence            9999998655

>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase

Probab=82.62  E-value=15  Score=32.78  Aligned_cols=98  Identities=13%  Similarity=0.239  Sum_probs=62.1

Q ss_pred             HHHHHHHhh--cCCCCEEEEEeCCCCCC-CCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHH-hCCCC
Q 024528           29 LKAWKEQVF--TQRPNSILVISGHWETD-VPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLT-ESGFN  104 (266)
Q Consensus        29 ~~~l~~~i~--~~~Pd~IvviS~Hw~~~-~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~-~~g~d  104 (266)
                      .+++.+.+.  ..+-..+|+|+.|-+.. .+....+.          -|+......+....+++|++.+.+.++ +.|+ 
T Consensus       124 H~al~~~L~~~~~~~g~~~liD~HSm~s~~p~~~~g~----------~pd~~lG~~~G~s~~~~l~~~l~~~l~~~~g~-  192 (263)
T TIGR02017       124 HAALQAEIERLRAQHGYAVLYDAHSIRSVIPRLFEGK----------LPDFNIGTNDGASCDPALTDAVEAVCAKATGY-  192 (263)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeccCCccCCCcCCCC----------CCCEEEeCCCCCCCCHHHHHHHHHHHHhcCCc-
Confidence            344444443  34567789999994322 12111111          122222223344569999999999996 6788 


Q ss_pred             cccccCCCCccccchhhhhhhccCCCCCeEEEEecC
Q 024528          105 HVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT  140 (266)
Q Consensus       105 ~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~  140 (266)
                      .+..+..+   .|.++.-+|=.|+..+..|||-+|.
T Consensus       193 ~v~~N~Py---~Gg~itr~yg~p~~~vhaiQiEi~r  225 (263)
T TIGR02017       193 SHVLNGRF---KGGWITRHYGQPQNGVHAVQMELAQ  225 (263)
T ss_pred             eEEeCCCC---CCcceecccCCCCCCCceEeeeEch
Confidence            46544333   6788888888898999999999984

In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.

>PRK05723 flavodoxin; Provisional

Probab=81.00  E-value=7.8  Score=31.58  Aligned_cols=95  Identities=14%  Similarity=0.189  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC-CCChHHHHHHHHHhc-----cccCC
Q 024528           87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT-RKDGTHHYNMGKALA-----PLKDE  160 (266)
Q Consensus        87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~-~~~~~~~~~lG~aL~-----~~~d~  160 (266)
                      ..++|++|.+.+.+.|++ +.......+     .-+.- + +.+.=|+-+|.-. +-.|.....|=+.|.     .+.+.
T Consensus        14 ae~~A~~la~~l~~~g~~-~~~~~~~~~-----~~~~~-~-~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~~~l~~~   85 (151)
T PRK05723         14 AEEVARHAESLLKAAGFE-AWHNPRASL-----QDLQA-F-APEALLAVTSTTGMGELPDNLMPLYSAIRDQLPAAWRGL   85 (151)
T ss_pred             HHHHHHHHHHHHHHCCCc-eeecCcCCH-----hHHHh-C-CCCeEEEEECCCCCCCCchhHHHHHHHHHhcCccCCCCC
Confidence            456899999999988985 432111111     01100 0 1121133333211 133444444444444     45568


Q ss_pred             CeEEEEecCCccccccccCCCCCcchhHHHHHHHHHH
Q 024528          161 GVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKD  197 (266)
Q Consensus       161 ~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~  197 (266)
                      +++|+|.|+.++.-        .+-..+..+|+++.+
T Consensus        86 ~~aVfGLGDs~Y~~--------~Fc~a~~~ld~~L~~  114 (151)
T PRK05723         86 PGAVIALGDSSYGD--------TFCGGGEQMRELFAE  114 (151)
T ss_pred             EEEEEeEeCCcchH--------HHhHHHHHHHHHHHH
Confidence            99999999997620        122455667776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
2pw6_A	271	Crystal Structure Of Uncharacterized Protein Jw3007		2e-35

>pdb|2PW6|A Chain A, Crystal Structure Of Uncharacterized Protein Jw3007 From Escherichia Coli K12 Length = 271

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 132/235 (56%), Gaps = 14/235 (5%)
Query: 2   STVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFT-QRPNSILVISGHWETDVPTVNV 60
           ST     F+ HGSP   ++++L    + ++W++   T  RP +I+V+S HW T    V  
Sbjct: 12  STRXPALFLGHGSPXNVLEDNL----YTRSWQKLGXTLPRPQAIVVVSAHWFTRGTGVTA 67
Query: 61  VQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWV 120
            +    I+DF  FP+ +Y   YPAPG+P LA+R+ +LL         E    G DHG+W 
Sbjct: 68  XETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKE--AWGFDHGSWG 125
Query: 121 PLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFD 180
            L+  YP+A+IP  QLS+ + K    H+  G+ LA L+DEG+ ++ SG+  HNLR +++ 
Sbjct: 126 VLIKXYPDADIPXVQLSIDSSKPAAWHFEXGRKLAALRDEGIXLVASGNVVHNLRTVKWH 185
Query: 181 GDSVA-SWASEFDNWLKDALL-QGRYED---VNHYEQKAPCAKKAHPWPDHFYPL 230
           GDS    WA+ F+ ++K  L  QG  E    VN+ + +      ++P P+H+ PL
Sbjct: 186 GDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEG--GTLSNPTPEHYLPL 238

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
2pw6_A	271	Uncharacterized protein YGID; JW3007, escherichia	2e-88
1b4u_B	302	LIGA, LIGB, protocatechuate 4,5-dioxygenase; extra	4e-27

>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1 Length = 271

 Score =  262 bits (671), Expect = 2e-88
 Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 8/259 (3%)

Query: 7   TFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDV 66
             F+ HGSP   ++++       +     +   RP +I+V+S HW T    V  ++    
Sbjct: 17  ALFLGHGSPMNVLEDN-LYTRSWQKLGMTL--PRPQAIVVVSAHWFTRGTGVTAMETPPT 73

Query: 67  IYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMY 126
           I+DF  FP+ +Y   YPAPG+P LA+R+ +LL         +    G DHG+W  L+ MY
Sbjct: 74  IHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTL--DKEAWGFDHGSWGVLIKMY 131

Query: 127 PEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDS-VA 185
           P+A+IP+ QLS+ + K    H+ MG+ LA L+DEG++++ SG+  HNLR +++ GDS   
Sbjct: 132 PDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPY 191

Query: 186 SWASEFDNWLKDALLQGRYEDVNHYE--QKAPCAKKAHPWPDHFYPLHVAMGAAGENANA 243
            WA+ F+ ++K  L      + +             ++P P+H+ PL   +GA       
Sbjct: 192 PWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPI 251

Query: 244 ELIHTSWQLGTISYSSYKF 262
            +     ++G++S  S + 
Sbjct: 252 TIPVEGIEMGSLSMLSVQI 270

>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B Length = 302

 Score =  105 bits (263), Expect = 4e-27
 Identities = 45/266 (16%), Positives = 82/266 (30%), Gaps = 34/266 (12%)

Query: 1   MSTVKNTFFISHGSPTL--SIDESLPARHFLKAWKE---------QVFTQRPNSILVISG 49
           M+ V      SH  P L  +I        +     +         +     P+ ++++  
Sbjct: 1   MARVTTGITSSH-IPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYN 59

Query: 50  -HWETDVPTVNVVQQNDVIYDFYNFPEQMY-KLKYPAPGAPELAKRVKQLLTESGFNHVN 107
            H       +           F    E    +      G P+LA  + Q L    F  + 
Sbjct: 60  DHASAFDMNIIPTFAIGCAETFKPADEGWGPRPVPDVKGHPDLAWHIAQSLILDEF-DMT 118

Query: 108 EDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSV----QTRKDGTHHYNMGKAL-----A 155
              +  +DHG  VPL +++ E       V    V         G   + +G ++     +
Sbjct: 119 IMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTYPPPSGKRCFALGDSIRAAVES 178

Query: 156 PLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAP 215
             +D  V + G+G  +H L+     G        EFD    D  L    E+++       
Sbjct: 179 FPEDLNVHVWGTGGMSHQLQ-----GPRAGLINKEFDLNFIDK-LISDPEELSKMPH-IQ 231

Query: 216 CAKKAHPWPDHFYPLHVAMGAAGENA 241
             +++           +  GA  E  
Sbjct: 232 YLRESGSEGVELVMWLIMRGALPEKV 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
2pw6_A	271	Uncharacterized protein YGID; JW3007, escherichia	100.0
1b4u_B	302	LIGA, LIGB, protocatechuate 4,5-dioxygenase; extra	100.0
3vsj_B	312	2-amino-5-chlorophenol 1,6-dioxygenase beta subun;	100.0
3vsj_A	271	2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU;	100.0
3bcz_A	293	Protein MEMO1; alpha/beta structure, peptide bindi	99.78

>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1

Probab=100.00  E-value=5e-72  Score=498.91  Aligned_cols=255  Identities=33%  Similarity=0.631  Sum_probs=223.2

Q ss_pred             CcceEEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccC
Q 024528            3 TVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKY   82 (266)
Q Consensus         3 ~~~~~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y   82 (266)
                      .++|++|+|||+|++.+++ +.+.++++++++++.  +||+||||||||++...+|+++++++++|||+|||+++|+++|
T Consensus        13 ~~~P~~flsHGsP~~~~~~-~~~~~~l~~l~~~l~--~P~aIvviSaHw~~~~~~V~~~~~~~~i~Df~gfp~~ly~~~y   89 (271)
T 2pw6_A           13 TRMPALFLGHGSPMNVLED-NLYTRSWQKLGMTLP--RPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHY   89 (271)
T ss_dssp             -CCCEEEEECC-CCCCSSC-CHHHHHHHHHHHHSC--CCSEEEEEEEEEEESSEEEECCCC-------------CCSCCC
T ss_pred             CcCCEEEECCCCCccCCCc-hHHHHHHHHHHHhCC--CCCEEEEEcCCCCCCceEEEeCCCCCCcCCcCcCCCcCccccc
Confidence            3689999999999988854 578899999999985  9999999999999999999999899999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCe
Q 024528           83 PAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGV  162 (266)
Q Consensus        83 ~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v  162 (266)
                      +++|+++||++|++.+.++||+ +.. .++++|||+||||++|+|++|+||||||+|...++++||+||++|+++||+||
T Consensus        90 ~~~g~peLA~~i~~~l~~~g~~-~~~-~~~glDHG~~vPL~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd~~V  167 (271)
T 2pw6_A           90 PAPGSPALAQRLVELLAPIPVT-LDK-EAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGI  167 (271)
T ss_dssp             CCCBCHHHHHHHHHHHTTSCEE-EES-SCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGGGTE
T ss_pred             CCCCCHHHHHHHHHHHHhcCCc-ccc-cccCCCcchhhhHHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCc
Confidence            9999999999999999999995 554 78999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCccccccccCCC-CCcchhHHHHHHHHHHHHH-cC--CHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCC
Q 024528          163 LIIGSGSATHNLRALQFDG-DSVASWASEFDNWLKDALL-QG--RYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAG  238 (266)
Q Consensus       163 ~iiaSG~lSH~l~~~~~~~-~~~~~~~~eFD~~v~~~l~-~g--d~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~  238 (266)
                      +|||||++||||+..++.+ .+..+|+.+||+|++++|+ +|  |.++|+++.. .|.++.+||+.|||+||++++||++
T Consensus       168 lIigSG~lsHnL~~~~~~~~~~~~~~~~eFD~~~~~~l~~~g~~d~~~L~~~~~-~~~a~~a~p~~eh~~pl~~alGa~~  246 (271)
T 2pw6_A          168 MLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLD-HEGGTLSNPTPEHYLPLLYVLGAWD  246 (271)
T ss_dssp             EEEEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTTTTCCSCGGGCTTTSGGG-STTHHHHCSSSTTTHHHHHHHHTCC
T ss_pred             EEEEeCccccCCCcccccCcCCCCchHHHHHHHHHHHHHhcCCcCHHHHhCccc-ChhHHHhCCchHhHHHHHHHHhCCC
Confidence            9999999999999987642 2456899999999999999 99  9999999965 4999999999999999999999998


Q ss_pred             CCCceEEecceeeeceeeeeEEEEc
Q 024528          239 ENANAELIHTSWQLGTISYSSYKFT  263 (266)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~  263 (266)
                      ++.+.++++++|.+|++||+||+|+
T Consensus       247 ~~~~~~~~~~~~~~g~l~~~~~~~~  271 (271)
T 2pw6_A          247 GQEPITIPVEGIEMGSLSMLSVQIG  271 (271)
T ss_dssp             SSSCEECSCCCEETTTEECCCEEEC
T ss_pred             CCCCeEEEecceeeccceEEEEEEC
Confidence            8778888999999999999999995

>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B

Probab=100.00  E-value=9.4e-48  Score=347.62  Aligned_cols=229  Identities=20%  Similarity=0.263  Sum_probs=190.0

Q ss_pred             CCCcceEEEEcCCCCCCCC------CCC---chHHHHHHHHHHHhhc--CCCCEEEEEeC-CCCCC-C-----CeEEecc
Q 024528            1 MSTVKNTFFISHGSPTLSI------DES---LPARHFLKAWKEQVFT--QRPNSILVISG-HWETD-V-----PTVNVVQ   62 (266)
Q Consensus         1 M~~~~~~~fisHg~P~~~~------~~~---~~~~~~~~~l~~~i~~--~~Pd~IvviS~-Hw~~~-~-----~~i~~~~   62 (266)
                      |++|+.++++||. |.+..      ++.   .++.++++++++++++  .+||+|||||| ||... .     .+|+..+
T Consensus         1 M~~Iv~~~~~sH~-P~i~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~~~Pd~Ivvis~~H~~~~~~~~~~~~~I~~~~   79 (302)
T 1b4u_B            1 MARVTTGITSSHI-PALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCAE   79 (302)
T ss_dssp             -CEEEEEEEECCC-HHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECSS
T ss_pred             ChHHhEEeECCCC-CcccCccccCCcchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcccccccccCCceEEecCC
Confidence            9999999999996 54432      111   3778899999999987  89999999999 55432 2     3455555


Q ss_pred             CCCcccCCCCCccccccccC-CCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEe
Q 024528           63 QNDVIYDFYNFPEQMYKLKY-PAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSV  138 (266)
Q Consensus        63 ~~~~~~Df~gfp~~~y~~~y-~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~  138 (266)
                      +++ +|||.++|.     +| +++||++||++|++.+.+.|+| +..+.++++|||+||||.||+|+.+   +||||||+
T Consensus        80 ~~~-~~d~~~G~~-----~~~~~~G~peLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpisv  152 (302)
T 1b4u_B           80 TFK-PADEGWGPR-----PVPDVKGHPDLAWHIAQSLILDEFD-MTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPV  152 (302)
T ss_dssp             EEC-BCBCSSSBC-----SSCCEECCHHHHHHHHHHHHHTTCC-CEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEB
T ss_pred             CCc-cCcccCCCc-----CCCCCCCCHHHHHHHHHHHHhcCCC-eeccCCcCCCceeeehHHHhcCcccCCcCcEEEEee
Confidence            566 799865552     57 8999999999999999999996 6666779999999999999999987   99999999


Q ss_pred             cCCCC----hHHHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhc
Q 024528          139 QTRKD----GTHHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNH  209 (266)
Q Consensus       139 ~~~~~----~~~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~  209 (266)
                      |...+    +++||+||++|+++     +|+||+|||||++|||+...+.+     .++++||+|++++| ++|.++|++
T Consensus       153 ~~~~~p~~~~~~~~~lG~aL~~~~~~~~~d~~VlIIgSG~lSH~l~~~~~g-----~~~~~fD~~~~~~l-~~d~~~L~~  226 (302)
T 1b4u_B          153 NVVTYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAG-----LINKEFDLNFIDKL-ISDPEELSK  226 (302)
T ss_dssp             CCSSSCCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTTT-----BCCHHHHHHHHHHH-HHCHHHHTT
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCCcCc-----cchHHHHHHHHHHH-ccCHHHHHh
Confidence            97765    59999999999987     58999999999999999865431     47899999999999 999999999


Q ss_pred             chhcCchhhhcCCCcCcHHHHHHHHccCCCCCceEE
Q 024528          210 YEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAEL  245 (266)
Q Consensus       210 ~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~~~~~~  245 (266)
                      +.. .+..+.+|++..|++++++++||+++. +.+.
T Consensus       227 ~~~-~~~a~~ag~~~~~~~~~~~~~GA~~~~-~~~~  260 (302)
T 1b4u_B          227 MPH-IQYLRESGSEGVELVMWLIMRGALPEK-VRDL  260 (302)
T ss_dssp             CCH-HHHHHHHCTTGGGGHHHHHHHHTSCSC-EEEE
T ss_pred             ccc-chHHHHcCCChhHHHHHHHHHHcCCCC-CCcE
Confidence            954 677888999888899999999999764 4443

>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*

Probab=100.00  E-value=1.2e-47  Score=348.36  Aligned_cols=239  Identities=18%  Similarity=0.168  Sum_probs=194.8

Q ss_pred             CCcceEEEEcCCCCCCCCC--------C----CchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecc-CCCccc
Q 024528            2 STVKNTFFISHGSPTLSID--------E----SLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQ-QNDVIY   68 (266)
Q Consensus         2 ~~~~~~~fisHg~P~~~~~--------~----~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~-~~~~~~   68 (266)
                      ++|+.++++||- |.|.+.        +    .+++.++|+++++++.+.+||+||||||||++..+.+.++. .....+
T Consensus         3 ~~iv~a~~~~H~-P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~PdaIvviS~Hw~~~~~~~~~~~~~~~~~~   81 (312)
T 3vsj_B            3 GEIIAGFLAPHP-PHLVYGENPPQNEPRSQGGWEVLRWAYERARERLDAMKPDVLLVHSPHWITSVGHHFLGVPELSGKS   81 (312)
T ss_dssp             EEEEEEEECCCC-THHHHTTCCTTBCSCCSCCCHHHHHHHHHHHHHHHHHCCSEEEEEEEEEEESSSEEEECCSEEEEEE
T ss_pred             ceEEEEEECCCC-CeecccccccccCcccchhHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCccCCeEEeccCCCCccc
Confidence            578899999994 444311        1    24678999999999988899999999999999887766532 234467


Q ss_pred             CCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccc--cCCCCccccchhhhhhhccCCCCCeEEEEecC---CCC
Q 024528           69 DFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNE--DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT---RKD  143 (266)
Q Consensus        69 Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~--~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~---~~~  143 (266)
                      |+++||+. |+++|+++||++||++|++.+.+.||| +..  +.++++|||+||||.||+|+.++||||||+|.   ..+
T Consensus        82 ~~~~f~~f-~~~~y~~~gd~eLA~~i~~~l~~~g~~-~~~~~~~~~~lDHG~~vpL~~l~p~~~~pVVpis~~~~p~~~~  159 (312)
T 3vsj_B           82 VDPIFPNV-FRYDFSLNVDVELAEACAEEGRKAGLV-TKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGISANNSPYYLN  159 (312)
T ss_dssp             ECSSCTTT-CEEEEEEEBCHHHHHHHHHHHHHTTCC-EEEECCTTCCCCHHHHHHHHHHCTTCCSCEEEEEEESHHHHTC
T ss_pred             cccCCCcc-CcccCCCCCCHHHHHHHHHHHHHcCCc-eeeccCccccCCcchHhHHHHhCCCCCCCEEEEeecCCCCCCC
Confidence            77777743 689999999999999999999999996 653  67899999999999999999999999999985   489


Q ss_pred             hH----HHHHHHHHhcccc---CCCeEEEEecCCccccccccCC---C----CCcchhHHHHHHHHHHHHHcCCHhHHhc
Q 024528          144 GT----HHYNMGKALAPLK---DEGVLIIGSGSATHNLRALQFD---G----DSVASWASEFDNWLKDALLQGRYEDVNH  209 (266)
Q Consensus       144 ~~----~~~~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~~~---~----~~~~~~~~eFD~~v~~~l~~gd~~~l~~  209 (266)
                      ++    +|++||++|++++   |+||+|||||++|||+...++.   .    .++.+|+++||+|++++|+++|.++|++
T Consensus       160 ~~~~~~~~~~lG~aL~~~~~~~d~~Vlii~SG~lsH~l~~~~~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~gD~~~L~~  239 (312)
T 3vsj_B          160 TKEGMSEMDVLGKATREAIRKTGRKAVLLASNTLSHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQGKTSEVFK  239 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCSCCCCCCSCCSSTTCGGGCCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcCCCEEEEEECcccccCCcccccccccccccCCCCHHHHHHHHHHHHHHHcCCHHHHHh
Confidence            88    9999999999973   8999999999999999864431   0    2346899999999999999999999999


Q ss_pred             chhcCchhhhcCCCcCcHHHHHHHHccCCCC-CceEEe
Q 024528          210 YEQKAPCAKKAHPWPDHFYPLHVAMGAAGEN-ANAELI  246 (266)
Q Consensus       210 ~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~-~~~~~~  246 (266)
                      +..+  ....++ ++|++.++.+++||++.. .+++++
T Consensus       240 ~~~e--~~~~a~-g~cG~~~~~~l~gAl~~~~~~~~ll  274 (312)
T 3vsj_B          240 LLPQ--FIDEAF-AEVKSGAFTWMHAAMQYPELAAELF  274 (312)
T ss_dssp             HHHH--HHHHHT-CGGGGSHHHHHHHHTTCCCCCCEEE
T ss_pred             CCHH--HHHHhc-cccCHHHHHHHHHHhcCCCCcceEE
Confidence            9543  222232 489999999999998753 356655

>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*

Probab=100.00  E-value=2.8e-46  Score=333.22  Aligned_cols=235  Identities=14%  Similarity=0.145  Sum_probs=196.6

Q ss_pred             cceEEEEcCCCCC--CCCCCC---chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecc-CCCcccCCCCCcccc
Q 024528            4 VKNTFFISHGSPT--LSIDES---LPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQ-QNDVIYDFYNFPEQM   77 (266)
Q Consensus         4 ~~~~~fisHg~P~--~~~~~~---~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~-~~~~~~Df~gfp~~~   77 (266)
                      |+.++++||  ||  +++++.   .++.++++++++++.+.+||+||||||||.+..+.++++. ++...+++++|| .+
T Consensus         3 iv~a~~~pH--~P~~~l~pe~~~~~~~~~a~~~~~~~l~~~~Pd~ivvis~h~~~~~~~~~i~~~~~~~~~~~~~f~-~~   79 (271)
T 3vsj_A            3 VVSAFLVPG--TPLPQLKPEVPSWGQLAAATERAGKALAASRPDVVLVYSTQWLAVLDQQWLTRPRSEGVHVDENWY-EF   79 (271)
T ss_dssp             EEEEEEECC--CSHHHHCTTSHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEESSSEEEECCSEEEEEECCTTTG-GG
T ss_pred             eEEEEEcCC--CCccCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccCcEEEeccCCCcccccCCch-hh
Confidence            577899999  55  666664   3667889999999988999999999999999888877643 345667888888 46


Q ss_pred             ccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhccCCC-CCeEEEEecCCCChHHHHHHHHHh
Q 024528           78 YKLKYPAPGAPELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMYPEAN-IPVCQLSVQTRKDGTHHYNMGKAL  154 (266)
Q Consensus        78 y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~-iPvV~vs~~~~~~~~~~~~lG~aL  154 (266)
                      ++++|+++||++||++|++.+.+.|+| +.  .+.++++|||+||||.||+|+.+ +||||||+|...++++|++||++|
T Consensus        80 g~~~y~~~gd~~la~~i~~~~~~~g~~-~~~~~~~~~~lDHg~~vpl~~l~~~~~~~pvv~i~~~~~~~~~~~~~lG~al  158 (271)
T 3vsj_A           80 GDLAYDIRADTALAEACVTSSPLHGVH-ARGVNYDGFPIDTGTITACTLMGIGTDAFPLVVGSNNLYHSGEITEKLAALA  158 (271)
T ss_dssp             CCEEEEEEBCHHHHHHHHHHHHHTTCC-EEEECCTTCCCCHHHHHHHHHHTCSSSSSCEEEEEEETTCCHHHHHHHHHHH
T ss_pred             ccccccCcCCHHHHHHHHHHHHHCCCc-EEeecCCCCCcchhHHHHHHHHhccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999999999996 54  35789999999999999999976 999999999899999999999999


Q ss_pred             cccc---CCCeEEEEecCCccccccccCC---CCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCC-CcCcH
Q 024528          155 APLK---DEGVLIIGSGSATHNLRALQFD---GDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHP-WPDHF  227 (266)
Q Consensus       155 ~~~~---d~~v~iiaSG~lSH~l~~~~~~---~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p-~~~h~  227 (266)
                      +++.   ++||+|||||++|||+...++.   ..++.+|+++||++++++|+++|.++|+++..+    ..... ++|++
T Consensus       159 ~~~~~~~~~~vlii~SGdlsH~l~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~~D~~~L~~~~~~----~~~~a~g~~G~  234 (271)
T 3vsj_A          159 VDCAKDQNKRVAVVGVGGLSGSLFREEIDPREDRIANEEDDKWNRRVLKLIEAGDVSALREAMPV----YAKEARVDMGF  234 (271)
T ss_dssp             HHHHHHTTCCEEEEEECCSCCCCCSSCCCGGGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH----HHHHTTCGGGG
T ss_pred             HHHHHHcCCCEEEEEECccccCCcccCCCCCCCCCCCcchHHHHHHHHHHHHCCCHHHHHhcCHH----HHHHhccCCcH
Confidence            9963   8999999999999999643321   113468999999999999999999999999543    33444 68999


Q ss_pred             HHHHHHHccCCCC-CceEEe
Q 024528          228 YPLHVAMGAAGEN-ANAELI  246 (266)
Q Consensus       228 ~pl~~~lGa~~~~-~~~~~~  246 (266)
                      .++.+++||+++. .+++.+
T Consensus       235 ~~~~~l~gal~~~~~~~~ll  254 (271)
T 3vsj_A          235 KHLHWILGALKGKFSGANVL  254 (271)
T ss_dssp             HHHHHHHHHTTTCCSEEEEE
T ss_pred             HHHHHHHHhcCCCCCCccee
Confidence            9999999998753 355554

>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A

Probab=99.78  E-value=5.3e-19  Score=158.80  Aligned_cols=177  Identities=12%  Similarity=0.067  Sum_probs=128.0

Q ss_pred             cCCCCEEEEEeC-CCCCCCCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCccccc-CCCCcc
Q 024528           38 TQRPNSILVISG-HWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNED-TKRGLD  115 (266)
Q Consensus        38 ~~~Pd~IvviS~-Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~-~~~~lD  115 (266)
                      ..+||+|||++| |..... .+.+.....    | .-|-      .+.+.|.+++++|.+..   .+  ...+ .....+
T Consensus        64 ~~~p~~VvilGP~H~~~~~-~~a~~~~~~----~-~TPl------G~l~vD~el~~~L~~~~---~~--~~~d~~~~~~E  126 (293)
T 3bcz_A           64 PSITRRIFILGPSHHVPLS-RCALSSVDI----Y-RTPL------YDLRIDQKIYGELWKTG---MF--ERMSLQTDEDE  126 (293)
T ss_dssp             TTTCCEEEEEEECSSSCCS-SEEECSCSE----E-CCSS------CCEEBCHHHHHHHHHTS---CE--EECCHHHHHHC
T ss_pred             cCCCCEEEEECCCCCCCCC-ceEEccCCc----e-ECCC------ccCCCCHHHHHHHHhcC---Cc--ccccccccchh
Confidence            468999999999 976543 344432111    1 1121      14566999999886652   22  1121 234679


Q ss_pred             ccchhhhhhhccC-----CCCCeEEEEecCCCChHHHHHHHHHhcccc-CCCeEEEEecCCccccccccCCCC-----Cc
Q 024528          116 HGAWVPLMLMYPE-----ANIPVCQLSVQTRKDGTHHYNMGKALAPLK-DEGVLIIGSGSATHNLRALQFDGD-----SV  184 (266)
Q Consensus       116 HG~~vPL~~l~p~-----~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~-d~~v~iiaSG~lSH~l~~~~~~~~-----~~  184 (266)
                      |++-|+|-|+..-     .++|||||.++ ..+++++++||++|+++. +.+++||+|||+||+-...+..+.     ..
T Consensus       127 HSlEv~LPfL~~~~~~~~~~~~IVPI~vg-~~~~~~~~~~g~~l~~~~~~~~~l~V~SsDlsH~g~~fgy~~~~~~~~~~  205 (293)
T 3bcz_A          127 HSIEMHLPYTAKAMESHKDEFTIIPVLVG-ALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEI  205 (293)
T ss_dssp             CTTGGGHHHHHHHTGGGTTSCEEEEEEEC-CCCHHHHHHHHHHHHHHHTCTTEEEEEECCCCEEBGGGTBCCCCGGGCSH
T ss_pred             eEEEeeHHHHHHHhCCCCCCceEEEEEcC-CCCHHHHHHHHHHHHHHHhCCCeEEEEeCCccCCCCCCCCCccccccchh
Confidence            9999999887642     37999999995 589999999999999975 459999999999998332221100     12


Q ss_pred             chhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCC
Q 024528          185 ASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAG  238 (266)
Q Consensus       185 ~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~  238 (266)
                      .+.+++||+.++++|+++|.+++.++.+      ....+.|++.|+.++++++.
T Consensus       206 ~~~~~~~D~~~i~~i~~~d~~~~~~~~~------~~~~t~CG~~pi~~~l~a~~  253 (293)
T 3bcz_A          206 YRSIEHLDKMGMSIIEQLDPVSFSNYLK------KYHNTICGRHPIGVLLNAIT  253 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHH------HHCCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHH------HhCcCcCcHHHHHHHHHHHH
Confidence            3668999999999999999999998743      35668999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d2pw6a1	258	c.56.6.1 (A:14-271) Uncharacterized protein YgiD {	4e-87
d1b4ub_	298	c.56.6.1 (B:) LigB subunit of an aromatic-ring-ope	1e-24

>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: Uncharacterized protein YgiD
species: Escherichia coli [TaxId: 562]

 Score =  258 bits (659), Expect = 4e-87
 Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 10/260 (3%)

Query: 7   TFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDV 66
             F+ HGSP   ++++L  R   +     +   RP +I+V+S HW T    V  ++    
Sbjct: 4   ALFLGHGSPMNVLEDNLYTR-SWQKLGMTL--PRPQAIVVVSAHWFTRGTGVTAMETPPT 60

Query: 67  IYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMY 126
           I+DF  FP+ +Y   YPAPG+P LA+R+ +LL         +    G DHG+W  L+ MY
Sbjct: 61  IHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTL--DKEAWGFDHGSWGVLIKMY 118

Query: 127 PEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDS-VA 185
           P+A+IP+ QLS+ + K    H+ MG+ LA L+DEG++++ SG+  HNLR +++ GDS   
Sbjct: 119 PDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSSPY 178

Query: 186 SWASEFDNWLKDALLQG---RYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENAN 242
            WA+ F+ ++K  L          + +Y         ++P P+H+ PL   +GA      
Sbjct: 179 PWATSFNEYVKANLTWQGPVEQHPLVNYL-DHEGGTLSNPTPEHYLPLLYVLGAWDGQEP 237

Query: 243 AELIHTSWQLGTISYSSYKF 262
             +     ++G++S  S + 
Sbjct: 238 ITIPVEGIEMGSLSMLSVQI 257

>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: LigB subunit of an aromatic-ring-opening dioxygenase LigAB
species: Pseudomonas paucimobilis [TaxId: 13689]

 Score = 97.8 bits (243), Expect = 1e-24
 Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 33/242 (13%)

Query: 25  ARHFLKAWKEQVFTQRPNSILVISG-HWETDVPTVNVVQQNDVIYDFYNFPEQMYKL-KY 82
               ++ W +Q     P+ ++++   H       +           F    E        
Sbjct: 35  GYQPIRDWIKQ-PGNMPDVVILVYNDHASAFDMNIIPTFAIGCAETFKPADEGWGPRPVP 93

Query: 83  PAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQ 139
              G P+LA  + Q L    F  +    +  +DHG  VPL +++ E       V    V 
Sbjct: 94  DVKGHPDLAWHIAQSLILDEF-DMTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVN 152

Query: 140 TRK----DGTHHYNMGKALAP-----LKDEGVLIIGSGSATHNLRALQFDGDSVASWASE 190
                   G   + +G ++        +D  V + G+G  +H L+  +    +      E
Sbjct: 153 VVTYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAGLIN-----KE 207

Query: 191 FDNWLKDALLQGRYE-----DVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAEL 245
           FD    D L+    E      + +  +      +   W        +  GA  E      
Sbjct: 208 FDLNFIDKLISDPEELSKMPHIQYLRESGSEGVELVMW-------LIMRGALPEKVRDLY 260

Query: 246 IH 247
             
Sbjct: 261 TF 262

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d2pw6a1	258	Uncharacterized protein YgiD {Escherichia coli [Ta	100.0
d1b4ub_	298	LigB subunit of an aromatic-ring-opening dioxygena	100.0

>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: Uncharacterized protein YgiD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.9e-74  Score=503.90  Aligned_cols=254  Identities=31%  Similarity=0.616  Sum_probs=222.2

Q ss_pred             cceEEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCC
Q 024528            4 VKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYP   83 (266)
Q Consensus         4 ~~~~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~   83 (266)
                      ++|++|+|||+|++++++ +++.++|+++++++  .|||+||||||||++.++.|++.+.++++|||+|||+++|+++|+
T Consensus         1 r~P~lFisHG~P~~~l~~-~~~~~~l~~lg~~l--~kP~aIvviSaHw~~~~~~v~~~~~~~~~~Df~gFp~~ly~~~y~   77 (258)
T d2pw6a1           1 RMPALFLGHGSPMNVLED-NLYTRSWQKLGMTL--PRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYP   77 (258)
T ss_dssp             CCCEEEEECC-CCCCSSC-CHHHHHHHHHHHHS--CCCSEEEEEEEEEEESSEEEECCCC-------------CCSCCCC
T ss_pred             CCCeEEeCCCCcccCcCC-cHHHHHHHHHHHhc--CCCCEEEEECCCcCCCCceEEecCCCCccccccccchhhccccCc
Confidence            589999999999999854 67788999999997  589999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCeE
Q 024528           84 APGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVL  163 (266)
Q Consensus        84 ~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~  163 (266)
                      ++|+++||++|++.++++|+ ++. +.++++|||+||||++|+|+.++||||||++...+++++|+||++|+++|++||+
T Consensus        78 ~~g~~~La~~i~~~l~~~gi-~~~-~~~~glDHG~~vPL~~m~p~~~~pvv~iS~~~~~~~~~~~~lG~aL~~lr~e~vl  155 (258)
T d2pw6a1          78 APGSPALAQRLVELLAPIPV-TLD-KEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIM  155 (258)
T ss_dssp             CCBCHHHHHHHHHHHTTSCE-EEE-SSCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGGGTEE
T ss_pred             CCCCHHHHHHHHHHhccCCc-ccc-CCCccccccceeeeeEecCcccceEEEEecCCCCCHHHHHHHHHHHHHHHHCCEE
Confidence            99999999999999999999 454 6779999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCccccccccCCC-CCcchhHHHHHHHHHHHHHcC---CHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCC
Q 024528          164 IIGSGSATHNLRALQFDG-DSVASWASEFDNWLKDALLQG---RYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGE  239 (266)
Q Consensus       164 iiaSG~lSH~l~~~~~~~-~~~~~~~~eFD~~v~~~l~~g---d~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~  239 (266)
                      |||||++||||+..++.+ ....+|+.+||+|+.+.|+++   |.++|+++. ++|+++.+||++|||+||++++||+++
T Consensus       156 iIgSG~lsHnL~~~~~~~~~~~~~~a~~Fd~w~~~~l~~~~~~~~~~l~~~~-~~p~a~~ahPt~EH~~Pl~~alGa~~~  234 (258)
T d2pw6a1         156 LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYL-DHEGGTLSNPTPEHYLPLLYVLGAWDG  234 (258)
T ss_dssp             EEEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTTTTCCSCGGGCTTTSGG-GSTTHHHHCSSSTTTHHHHHHHHTCCS
T ss_pred             EEEecccccccccccccCCCCCCcHHHHHHHHHHHHHhcCCchhhHHHHHHH-hChhHhhcCCchhHHHHHHHHhhCCCC
Confidence            999999999999876543 335689999999999999987   677788884 589999999999999999999999998


Q ss_pred             CCceEEecceeeeceeeeeEEEEc
Q 024528          240 NANAELIHTSWQLGTISYSSYKFT  263 (266)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~  263 (266)
                      +.+.+.+|++|.+|+|||+||+||
T Consensus       235 ~~~~~~~~~~~~~gslsm~s~~fg  258 (258)
T d2pw6a1         235 QEPITIPVEGIEMGSLSMLSVQIG  258 (258)
T ss_dssp             SSCEECSCCCEETTTEECCCEEEC
T ss_pred             CCCeEEEecCeeeceeeeEEEEeC
Confidence            888999999999999999999997

>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: LigB-like
family: LigB-like
domain: LigB subunit of an aromatic-ring-opening dioxygenase LigAB
species: Pseudomonas paucimobilis [TaxId: 13689]

Probab=100.00  E-value=6.6e-42  Score=305.66  Aligned_cols=224  Identities=20%  Similarity=0.281  Sum_probs=171.8

Q ss_pred             CCcceEEEEcCCCCCCCC-------CCC--chHHHHHHHHHHHhhc--CCCCEEEEEeC-CCCCCC----CeEEeccCCC
Q 024528            2 STVKNTFFISHGSPTLSI-------DES--LPARHFLKAWKEQVFT--QRPNSILVISG-HWETDV----PTVNVVQQND   65 (266)
Q Consensus         2 ~~~~~~~fisHg~P~~~~-------~~~--~~~~~~~~~l~~~i~~--~~Pd~IvviS~-Hw~~~~----~~i~~~~~~~   65 (266)
                      |||+.++++||. |+|..       +++  .++.++++++++++++  .|||+|||||+ ||++..    +.|+++....
T Consensus         1 A~Iv~~~~~SH~-P~i~~~~d~~~~~~~~~~~~~~a~~~l~~~l~e~~~kPDviVVvs~DH~~~f~~~~~p~f~ig~~~~   79 (298)
T d1b4ub_           1 ARVTTGITSSHI-PALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCAET   79 (298)
T ss_dssp             CEEEEEEEECCC-HHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECSSE
T ss_pred             CeEEEEEeCCCc-chhccccccCCCCcHHHHHHHHHHHHHHHHHHhhccCcCEEEEEeccHHHHhccccCCccccccccc
Confidence            689999999995 66521       111  3677889999999984  48999999999 998753    3455543222


Q ss_pred             cccCCCCC-ccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCC
Q 024528           66 VIYDFYNF-PEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTR  141 (266)
Q Consensus        66 ~~~Df~gf-p~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~  141 (266)
                      ......+| +.    ..|+++|+++||++|++.+.++||| ++.+.++++|||++|||+||+|+.+   +|||||++|+.
T Consensus        80 ~~~~~~~~~~~----~~~~~~g~~eLA~~i~~~~~~~g~d-~~~~~~~~lDHg~~vPl~~l~~~~~~~~ipvVpi~~n~~  154 (298)
T d1b4ub_          80 FKPADEGWGPR----PVPDVKGHPDLAWHIAQSLILDEFD-MTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVV  154 (298)
T ss_dssp             ECBCBCSSSBC----SSCCEECCHHHHHHHHHHHHHTTCC-CEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCS
T ss_pred             ccCCccccCcc----CCCCCCCCHHHHHHHHHHHHHCCCC-cccccCcCcccccceeHHHhcCccccCCCceEEEeeecc
Confidence            21111222 22    2368899999999999999999997 8888999999999999999999754   89999999876


Q ss_pred             ----CChHHHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchh
Q 024528          142 ----KDGTHHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQ  212 (266)
Q Consensus       142 ----~~~~~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~  212 (266)
                          .++++||+||++|+++     +|+||+|||||+|||||..++.+     ..+++||+++++.|++ +.++++.+..
T Consensus       155 ~~p~~s~~r~~~lG~ai~~ai~~~~~d~rV~viaSGgLSH~l~~~~~~-----~~~~efD~~~l~~l~~-~~~~~~~~~~  228 (298)
T d1b4ub_         155 TYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAG-----LINKEFDLNFIDKLIS-DPEELSKMPH  228 (298)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTTT-----BCCHHHHHHHHHHHHH-CHHHHTTCCH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcccCCCEEEEEeCcccccCCCCCCC-----CCCHHHHHHHHHHHhc-ChHhhhhCCc
Confidence                4679999999999996     37899999999999999776643     3458999999999986 5566666532


Q ss_pred             cCchhhhcCCCcC--cHHHHHHHHccCCCC
Q 024528          213 KAPCAKKAHPWPD--HFYPLHVAMGAAGEN  240 (266)
Q Consensus       213 ~~p~~~~a~p~~~--h~~pl~~~lGa~~~~  240 (266)
                      . .  ....++.|  ++++|++|+||+++.
T Consensus       229 ~-e--~~~~aG~~g~Elr~wi~~~gAl~~~  255 (298)
T d1b4ub_         229 I-Q--YLRESGSEGVELVMWLIMRGALPEK  255 (298)
T ss_dssp             H-H--HHHHHCTTGGGGHHHHHHHHTSCSC
T ss_pred             H-H--HHHHhccCHHHHHHHHHHHHhcCCC
Confidence            1 1  23334444  379999999999864