Citrus Sinensis ID: 024545

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTRHSR
Secondary Structure (PSIPRED)
cHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEcEEHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEcccHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVSLLLSSmadnvspskqFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGyrklsnekklewnnrgfsTFHAFIASTASLYLLLLSDlfsedyydELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDvaglkssniyICNGVALFLGWLVARILLFIYFFVHMAIhfdqvkeifplgfysllvvppmLAIMNVFWFWKIAKGLIRTlsktrhsr
Flexible Loop (DISEMBL)
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINrtsslsetVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIrtlsktrhsr
Low Complexity Region (SEG)
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAslyllllsdlfsedyydELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTRHSR
Disordered region (IsUnstruct)
****************KQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTL*******
Disordered Region (DISOPRED)
**SLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLI***S******
Disordered Region (DISEMBL)
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRT********
Disordered Region (DISPRO)
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTRHSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q6PGS5	262	Transmembrane protein 56-	N/A	no	0.766	0.778	0.300	6e-19
Q96MV1	263	Transmembrane protein 56	yes	no	0.800	0.809	0.285	2e-18
Q8CGF5	276	Transmembrane protein 56	yes	no	0.781	0.753	0.287	2e-17
Q6GLX2	258	Transmembrane protein 56-	N/A	no	0.763	0.786	0.292	3e-17
Q550S9	257	Transmembrane protein 56	yes	no	0.804	0.832	0.298	6e-17
Q6P4N1	259	Transmembrane protein 56	no	no	0.763	0.783	0.279	2e-16
Q5XIY2	264	Transmembrane protein 56-	no	no	0.804	0.810	0.261	9e-16
Q550T0	258	Transmembrane protein 56	no	no	0.774	0.798	0.242	1e-10
Q55BP8	272	Transmembrane protein 56	no	no	0.759	0.742	0.296	4e-09
Q0VD42	245	Transmembrane protein 136	no	no	0.469	0.510	0.280	2e-06

>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 12/216 (5%)

Query: 49  GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSE 106
           G+ KLS  +K+EWN+R  S+FHA +     LY+L+  D  + D  + D  ++        
Sbjct: 37  GFHKLSARQKIEWNSRTVSSFHALVVGCFCLYILVYDDAVNADPVWGDPFMVKLN----- 91

Query: 107 TVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTE 166
             + ++ GY +SDL +I++ +  +G   +V HH  ++++ +  L  G    +    L  E
Sbjct: 92  --VAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVLGEGMLPYFGNFRLIAE 149

Query: 167 ITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVARI-LLFIYFFVHMAIHFDQVKE 224
            +TPFVN RW+ +V G  K S   + NGV + + + + RI ++ IY+    +    +   
Sbjct: 150 FSTPFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIVRIAVIPIYYGRVFSTFGTEAFH 209

Query: 225 IFPLGFYSLLVVPPM-LAIMNVFWFWKIAKGLIRTL 259
              LG     ++  + L IMNV W  KIAKG  + L
Sbjct: 210 RLGLGAQCAWIISSVSLDIMNVMWMIKIAKGCYKVL 245

Xenopus laevis (taxid: 8355)

>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 8/221 (3%)

Query: 49  GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETV 108
           G+  LS +KK+EWN+R  ST H+ +     LY+ L  +    D      +    SL+   
Sbjct: 37  GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLFDEATKAD-----PLWGGPSLANVN 91

Query: 109 LGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEIT 168
           + I+ GY +SDL++I+  +  +G   +++HH  S+++ +L L +G         L  E++
Sbjct: 92  IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151

Query: 169 TPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVARI--LLFIYFFVHMAIHFDQVKEI 225
           +PFVN RW+ +     K S   + NG+ + + + + RI  +L  Y F++     +    +
Sbjct: 152 SPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRIASMLPHYGFMYSVYGTEPYIRL 211

Query: 226 FPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTRHSR 266
             L   S ++   +L +MNV W  KI+KG I+ +S  R  +
Sbjct: 212 GVLIQLSWVISCVVLDVMNVMWMIKISKGCIKVISHIRQEK 252

Homo sapiens (taxid: 9606)

>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 18/226 (7%)

Query: 49  GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETV 108
           GY  LS +KK+EWN+R  ST H+ +     LYL          ++DE  I        T 
Sbjct: 50  GYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLF---------FFDEATITDPLWGDPTY 100

Query: 109 LGISI----GYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF 164
           + I+I    GY +SDL +IL+ +  +G   +++HH   + + +  L +G         L 
Sbjct: 101 VNINIATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLL 160

Query: 165 TEITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVARILLF--IYFFVHMAIHFDQ 221
            E+++PFVN RW+ +     K S   + NG+ + + + + RI+    +YFF++ +++  +
Sbjct: 161 AELSSPFVNQRWFFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLY-SVYGTE 219

Query: 222 VKEIFPLGFYSLLVVPP-MLAIMNVFWFWKIAKGLIRTLSKTRHSR 266
               F     S+ +V   +L +MN+ W  KI KG I+ +S  R  +
Sbjct: 220 PYIRFGFVIQSVWIVTCVILDVMNIMWMIKITKGCIKVISLIRQEK 265

Mus musculus (taxid: 10090)

>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 26/229 (11%)

Query: 50  YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSET 107
           YR+LS  K+ EW++R  ST HA I  +A LY+L   D  + D  + D   +         
Sbjct: 37  YRQLSFGKQCEWDSRFVSTNHALIVGSACLYILAYDDAVNADPIWGDPFWVKMN------ 90

Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
            + I+ GY + DL ++   +  +     V HH    +S    L  G    +    L +E+
Sbjct: 91  -VAITCGYLVQDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISEL 149

Query: 168 TTPFVNLRWYLDVAG-LKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIF 226
           +TPFVN RW+ DV G  +SS   + NG+A+ L + + RI +       +  ++ QV   F
Sbjct: 150 STPFVNQRWFFDVIGKPRSSWPVLLNGLAMALVFFIVRIAV-------IPSYYSQVFATF 202

Query: 227 PLGFYSLLVVPPMLA---------IMNVFWFWKIAKGLIRTLSKTRHSR 266
               Y  L + P +A         I+NVFW +KIA+G  + +      +
Sbjct: 203 GTEGYIRLGIGPQVAWIVSCVVLDILNVFWMYKIARGFYKVVKAKPDGK 251

Xenopus laevis (taxid: 8355)

>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56b PE=3 SV=1

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 27/241 (11%)

Query: 38  LTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELI 97
           L  II ++  K        K++EW NR  ST +A + S  S+Y L         YY+E I
Sbjct: 26  LPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSIYCL---------YYNEWI 76

Query: 98  INR---TSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGK 154
           +N    TS +S  +      YF+ D  +  +    L     +LHH +++ S       G 
Sbjct: 77  VNSLRSTSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHHTIALLSFTFLGGKGL 136

Query: 155 AQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVH 214
           A   +L   FTEITTP +NLR++L    LK+  +Y+ NG+ +F+G+++ R+      F  
Sbjct: 137 AHHLLLSYTFTEITTPLINLRFFLLDLNLKNHPLYVINGLLIFVGFVLFRV------FYT 190

Query: 215 MAIHFDQV-------KEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIR--TLSKTRHS 265
            A  FD +        E  PL  + +  V P + ++N++W + I+K + +  T SK  +S
Sbjct: 191 SATMFDVIFNQPHYSIETDPLIPFFINFVYPAITLLNLYWTFYISKSIFKYFTTSKNENS 250

Query: 266 R 266
           R
Sbjct: 251 R 251

Dictyostelium discoideum (taxid: 44689)

>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 26/229 (11%)

Query: 50  YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSET 107
           YR+LS  K+ EW++R  ST HA +  +  LY+L   +  + D  + D   +         
Sbjct: 38  YRQLSFGKQCEWDSRCVSTTHALVVGSGCLYILAYDEAVNADPIWGDPFWVKMN------ 91

Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
            + I+ GY + DL ++   +  +     V HH    +S    L  G    +    L +E+
Sbjct: 92  -VAITCGYLVHDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISEL 150

Query: 168 TTPFVNLRWYLDVAG-LKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIF 226
           +TPFVN RW+ DV G  +SS   + NG+A+ L + + RI +       +  ++ QV   F
Sbjct: 151 STPFVNQRWFFDVIGKPRSSWPVLLNGLAMALVFFIVRIAV-------IPSYYSQVFATF 203

Query: 227 PLGFYSLLVVPPMLA---------IMNVFWFWKIAKGLIRTLSKTRHSR 266
               Y  L + P +A         I+NVFW +KIA+G  + +      +
Sbjct: 204 GTEGYIRLGIGPQVAWIVSCVVLDILNVFWMYKIARGFYKVVKAKPDGK 252

Xenopus tropicalis (taxid: 8364)

>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1

 Score = 84.3 bits (207), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 8/222 (3%)

Query: 48  KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSET 107
           +GY KL   K  +WN+R  ST HA I     LY+L   D  +ED      +    +L + 
Sbjct: 33  QGYGKLPPNKLNDWNSRLVSTVHALIVGLFCLYILWYDDAVNED-----PVWGDPNLVKL 87

Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
            + I+ GY   DL ++   +  +G + +V HH  ++++    L  G    +    L +E+
Sbjct: 88  NVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPYFANFRLISEL 147

Query: 168 TTPFVNLRWYLD-VAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHM-AIHFDQVKEI 225
           +TPFVN RW+ + +A  ++  + + NG+A+ + + + RI +   ++  +  I +    E 
Sbjct: 148 STPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPPYWAKVFGIIYSPTFEK 207

Query: 226 FPLGFYSLLVVPPM-LAIMNVFWFWKIAKGLIRTLSKTRHSR 266
             L      ++  + L I+N+ W +KIA+G  + ++     R
Sbjct: 208 LGLAIQVAWIISCVCLDILNIIWMYKIARGCYKVITGKLKGR 249

Danio rerio (taxid: 7955)

>sp|Q550T0|TM56A_DICDI Transmembrane protein 56 homolog A OS=Dictyostelium discoideum GN=tmem56a PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 111/219 (50%), Gaps = 13/219 (5%)

Query: 51  RKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLG 110
           ++LS   K+EW N+  +T  + ++ + S Y +     +++  +    +  T +LS+ +L 
Sbjct: 41  KQLSYSSKIEWTNKIVATISSIVSFSLSCYCI-----YNKKSWVTNEMTSTCALSDFILK 95

Query: 111 ISIGYFLSDLAMILWLYPALGGLEYVLHH---GLSMFSIFLALVSGKAQIYILMVLFTEI 167
               YFL D   ++  Y  L     ++HH   G+  + +++ L   K  + +L  L  EI
Sbjct: 96  FISFYFLFDALHLIIYYKQLFDWPIIIHHLVVGILSY-VYIGLYYKKVHLTLLYFLLFEI 154

Query: 168 TTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMA-IHFDQVKEIF 226
           T PF++++W+L    L++  +Y  NG  +   ++  R    IY  + +  I+ +   E+ 
Sbjct: 155 TNPFIHMKWFLKDLKLENHILYSINGFMMAFFFIFIRD---IYVPIKVVKIYINGYTELN 211

Query: 227 PLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTRHS 265
            +    +    P++ I+N+FW + + KG+++ LS+T+ S
Sbjct: 212 SIANTIIFFCFPIITILNLFWTYLVIKGILKHLSRTKTS 250

Dictyostelium discoideum (taxid: 44689)

>sp|Q55BP8|TM56C_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56c PE=3 SV=1

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 110/216 (50%), Gaps = 14/216 (6%)

Query: 48  KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSET 107
           K Y  L+ +KKLEW+ R  S  HAF+     L   ++S + S  Y D       S L   
Sbjct: 53  KAYTTLTEKKKLEWDQRVVSMIHAFLV----LPFCIISAVESFKYGDIFYFQNDSLL--M 106

Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHH--GLSMFSIFLALVSGKAQIY--ILMVL 163
           VL IS GYF+ DL +I +  P L G   ++H   GLS  +I++AL  G+      + ++L
Sbjct: 107 VLSISSGYFIWDL-IICYKDPKLVGTPMIIHAIMGLSS-NIYVALPHGRPCFVPIVAILL 164

Query: 164 FTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVK 223
            TEI+T  +N++ ++ V   KS   Y  +  A  + +LV+R ++ + F +++     Q  
Sbjct: 165 ITEISTIPLNMKGFIQVVNSKSK-YYNWSLGAFVITFLVSRCIIGLPFDIYLVYGCIQRW 223

Query: 224 EIFPLGFYSLLVVPPMLA-IMNVFWFWKIAKGLIRT 258
           ++FP+    + +    +   +N +W + + K L +T
Sbjct: 224 DVFPMDKSLVFITECGIQFFLNSYWSFLLIKKLYQT 259

Dictyostelium discoideum (taxid: 44689)

>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 7/132 (5%)

Query: 52  KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGI 111
           +L+  +  EWN R  +  H  ++   S Y+  +   +   +      +  + L   VL +
Sbjct: 25  RLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPG----SPNTPLQVHVLCL 80

Query: 112 SIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TEITTP 170
           ++GYF+ DL   ++      G   + HH LS+  I +ALV G++   +  VLF +EIT P
Sbjct: 81  TLGYFIFDLGWCIYFRSE--GPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEITNP 138

Query: 171 FVNLRWYLDVAG 182
            + +RW+L   G
Sbjct: 139 LLQIRWFLRETG 150

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
297745726	257	unnamed protein product [Vitis vinifera]	0.954	0.988	0.783	1e-115
225434283	267	PREDICTED: transmembrane protein 56-like	0.954	0.951	0.783	1e-115
255570873	267	conserved hypothetical protein [Ricinus	0.958	0.955	0.719	1e-106
363807648	280	uncharacterized protein LOC100780614 [Gl	0.981	0.932	0.704	1e-106
356569957	280	PREDICTED: LOW QUALITY PROTEIN: transmem	0.981	0.932	0.685	1e-104
449444320	260	PREDICTED: transmembrane protein 56-B-li	0.973	0.996	0.691	1e-103
388501646	264	unknown [Medicago truncatula]	0.954	0.962	0.685	2e-99
224145378	265	predicted protein [Populus trichocarpa]	0.951	0.954	0.739	3e-98
356553204	269	PREDICTED: transmembrane protein 56-B-li	0.962	0.951	0.648	3e-96
224030039	263	unknown [Zea mays] gi|414879974|tpg|DAA5	0.969	0.980	0.612	6e-93

>gi|297745726|emb|CBI15782.3| unnamed protein product [Vitis vinifera]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/254 (78%), Positives = 230/254 (90%)

Query: 13  VSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAF 72
           VS SK+F+W+ SVF G+I C IVY+LTG++S LCFKGY KLSN +K+EWNNRGFSTFHA 
Sbjct: 4   VSSSKEFHWMTSVFFGMIFCKIVYELTGLLSNLCFKGYTKLSNTEKVEWNNRGFSTFHAI 63

Query: 73  IASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGG 132
           I + ASLYLLL+SDLF ED  DE IINR S+LS+T+LGISIGYFLSDLAMILW +PALGG
Sbjct: 64  IVAVASLYLLLVSDLFDEDSRDESIINRASTLSDTILGISIGYFLSDLAMILWNFPALGG 123

Query: 133 LEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICN 192
           LEYVLHHGLSMFSIFL+L+SG+ Q+YILMVLF+E TTPFVNLRW+LDVAGLKSSN+YICN
Sbjct: 124 LEYVLHHGLSMFSIFLSLISGQGQVYILMVLFSESTTPFVNLRWHLDVAGLKSSNLYICN 183

Query: 193 GVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIA 252
           G+ALF GWLVARILLFI+FF HM IHFD+VK+IFPLGFYSLL+VPP+LA+MN FWFWKIA
Sbjct: 184 GIALFFGWLVARILLFIFFFYHMIIHFDEVKKIFPLGFYSLLMVPPVLAMMNAFWFWKIA 243

Query: 253 KGLIRTLSKTRHSR 266
           KGLI+TLSK RHS+
Sbjct: 244 KGLIKTLSKARHSQ 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434283|ref|XP_002263097.1| PREDICTED: transmembrane protein 56-like [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/254 (78%), Positives = 230/254 (90%)

Query: 13  VSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAF 72
           VS SK+F+W+ SVF G+I C IVY+LTG++S LCFKGY KLSN +K+EWNNRGFSTFHA 
Sbjct: 14  VSSSKEFHWMTSVFFGMIFCKIVYELTGLLSNLCFKGYTKLSNTEKVEWNNRGFSTFHAI 73

Query: 73  IASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGG 132
           I + ASLYLLL+SDLF ED  DE IINR S+LS+T+LGISIGYFLSDLAMILW +PALGG
Sbjct: 74  IVAVASLYLLLVSDLFDEDSRDESIINRASTLSDTILGISIGYFLSDLAMILWNFPALGG 133

Query: 133 LEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICN 192
           LEYVLHHGLSMFSIFL+L+SG+ Q+YILMVLF+E TTPFVNLRW+LDVAGLKSSN+YICN
Sbjct: 134 LEYVLHHGLSMFSIFLSLISGQGQVYILMVLFSESTTPFVNLRWHLDVAGLKSSNLYICN 193

Query: 193 GVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIA 252
           G+ALF GWLVARILLFI+FF HM IHFD+VK+IFPLGFYSLL+VPP+LA+MN FWFWKIA
Sbjct: 194 GIALFFGWLVARILLFIFFFYHMIIHFDEVKKIFPLGFYSLLMVPPVLAMMNAFWFWKIA 253

Query: 253 KGLIRTLSKTRHSR 266
           KGLI+TLSK RHS+
Sbjct: 254 KGLIKTLSKARHSQ 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570873|ref|XP_002526388.1| conserved hypothetical protein [Ricinus communis] gi|223534250|gb|EEF35964.1| conserved hypothetical protein [Ricinus communis]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/260 (71%), Positives = 224/260 (86%), Gaps = 5/260 (1%)

Query: 8   SMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFS 67
           S+ D V+P     WL S+FSGIIMC IVYKLTG++S+LCF GY KL+  +K+EWNNRGFS
Sbjct: 12  SIMDTVNP----MWLASIFSGIIMCIIVYKLTGVLSLLCFNGYGKLTKAQKIEWNNRGFS 67

Query: 68  TFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLY 127
           TFHA + ++AS YLL+LS LF ED +DELIINR+S +S +VLG+SIGYFL+DLAMILW +
Sbjct: 68  TFHAIVVASASFYLLMLSGLFDEDSHDELIINRSSDISNSVLGVSIGYFLADLAMILWYF 127

Query: 128 PALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSN 187
           PALGGLEYVLHHGLSM+SI LAL+SG+AQIYILM+LF+E TTPFVNLRWYLDVAG KSS 
Sbjct: 128 PALGGLEYVLHHGLSMYSIILALLSGQAQIYILMILFSESTTPFVNLRWYLDVAGQKSSK 187

Query: 188 IYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFW 247
           +Y+ NGV LFLGWLVARI+LFI FF HM IHFDQVK++FPLGFYSLL VPP+L +MNV W
Sbjct: 188 LYVSNGVLLFLGWLVARIILFICFFTHMFIHFDQVKKVFPLGFYSLLSVPPVLGVMNVVW 247

Query: 248 FWKIAKGLIRTLSKTR-HSR 266
           FWKIA+GLI+TLS+ + HS+
Sbjct: 248 FWKIARGLIKTLSRAKNHSQ 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807648|ref|NP_001242160.1| uncharacterized protein LOC100780614 [Glycine max] gi|255640748|gb|ACU20658.1| unknown [Glycine max]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/261 (70%), Positives = 225/261 (86%)

Query: 6   LSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRG 65
           L S +D  +P+K+  WL SVF+GII C IVY+LT I+S L FKGY KLS+ +K+EWNNRG
Sbjct: 13  LVSSSDFATPNKEIQWLGSVFTGIIFCVIVYRLTAILSSLLFKGYDKLSSAQKIEWNNRG 72

Query: 66  FSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILW 125
           FSTFHA  AS  S YLL+LSD+F++D ++ELIINR+S+ S  VLGISIGYFL+DLAMILW
Sbjct: 73  FSTFHALFASFMSFYLLVLSDIFNKDSHEELIINRSSTFSNLVLGISIGYFLADLAMILW 132

Query: 126 LYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKS 185
            +PALGGLEYVLHHGLSMFSI  +L+SG+  IYILMVLF+E TTPFVNLRW+LD+AGLKS
Sbjct: 133 HFPALGGLEYVLHHGLSMFSIIQSLLSGQGLIYILMVLFSESTTPFVNLRWHLDIAGLKS 192

Query: 186 SNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNV 245
           S +Y+ NG+ALF GWL+ARI LF++FF+HM  HFD+VKEIFPLGFYSLLVVPPMLA+MN+
Sbjct: 193 SKLYVWNGIALFFGWLIARIFLFMFFFIHMWTHFDEVKEIFPLGFYSLLVVPPMLAMMNL 252

Query: 246 FWFWKIAKGLIRTLSKTRHSR 266
           FWFWKIAKGL++T+SK +HS+
Sbjct: 253 FWFWKIAKGLVKTISKAKHSK 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569957|ref|XP_003553160.1| PREDICTED: LOW QUALITY PROTEIN: transmembrane protein 56-B-like [Glycine max]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/261 (68%), Positives = 224/261 (85%)

Query: 5   LLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNR 64
           +L S  D  +P+K+  WL SVF+GII C +VY+LT I+S L FKGY KLS+ +K+EWNNR
Sbjct: 12  VLVSSYDFATPNKEIQWLGSVFTGIIFCVVVYRLTAILSSLLFKGYGKLSSAEKIEWNNR 71

Query: 65  GFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMIL 124
           GFSTFHA  AS  S YLL+LSD+F++D ++EL+INR+S+ S +VLGISIGYFL+DLAMIL
Sbjct: 72  GFSTFHALFASFTSFYLLVLSDIFNKDSHEELVINRSSTFSNSVLGISIGYFLADLAMIL 131

Query: 125 WLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLK 184
           W +PALGGLEYVLHHGLSMFSI  +L+ G+ QIYILMVLF+E TTPFVNLRW+LD+A LK
Sbjct: 132 WHFPALGGLEYVLHHGLSMFSIIQSLLCGQGQIYILMVLFSESTTPFVNLRWHLDIADLK 191

Query: 185 SSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMN 244
           SS +Y+ NG+ALF GWL+ARI LF++FF+HM  HFD+VKEI+PLGFYSLLVVPP+LA+MN
Sbjct: 192 SSKLYVWNGIALFFGWLIARIFLFMFFFIHMWTHFDEVKEIYPLGFYSLLVVPPVLAMMN 251

Query: 245 VFWFWKIAKGLIRTLSKTRHS 265
           +FWFWKIAKGL++T+SK +HS
Sbjct: 252 LFWFWKIAKGLVKTISKAKHS 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444320|ref|XP_004139923.1| PREDICTED: transmembrane protein 56-B-like [Cucumis sativus] gi|449475829|ref|XP_004154563.1| PREDICTED: transmembrane protein 56-B-like [Cucumis sativus]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/259 (69%), Positives = 213/259 (82%)

Query: 8   SMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFS 67
           +++D   PSK+  WL SVFSG + C IVY LTGIIS+  FK Y KLSN  K+EWNNRGFS
Sbjct: 2   TISDTSGPSKELLWLASVFSGFVFCKIVYTLTGIISLQSFKAYVKLSNFGKVEWNNRGFS 61

Query: 68  TFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLY 127
           TFHA +A+++SLYL+L S  F     +EL+I RTSSLS+  LG SIGYFLSDLAM+LW++
Sbjct: 62  TFHALVAASSSLYLVLFSSTFDPSSSNELLIRRTSSLSDMTLGFSIGYFLSDLAMVLWVF 121

Query: 128 PALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSN 187
           PALGG EYV+HH LS+FSI  +L+SG+ Q+YILMVLFTE TTPFVNLRWYLD AG K+SN
Sbjct: 122 PALGGFEYVVHHVLSLFSIIQSLLSGQGQVYILMVLFTESTTPFVNLRWYLDNAGQKNSN 181

Query: 188 IYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFW 247
           +Y+ NG+ALFLGWLVARILLFIYFF HM  HFDQVK ++PLGFYSLL VPPMLA MNVFW
Sbjct: 182 LYVINGIALFLGWLVARILLFIYFFSHMFKHFDQVKTVYPLGFYSLLAVPPMLATMNVFW 241

Query: 248 FWKIAKGLIRTLSKTRHSR 266
           FWKIA+G+I+TL K RHS+
Sbjct: 242 FWKIARGMIKTLRKARHSK 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501646|gb|AFK38889.1| unknown [Medicago truncatula]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/254 (68%), Positives = 211/254 (83%)

Query: 13  VSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAF 72
            + SK+  WL+SVFSGII   IVY+LT   S   F GYRKLS+  K+EWNNRGFSTFHAF
Sbjct: 11  ATQSKEAQWLLSVFSGIIFSLIVYQLTAAFSSRLFIGYRKLSSAGKVEWNNRGFSTFHAF 70

Query: 73  IASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGG 132
            AS  SLYLL+LSDLF +D  ++L++NRTS+ S +VL  S GYFL+DLA I+W +PALGG
Sbjct: 71  FASFTSLYLLILSDLFKDDSQEKLVVNRTSTFSNSVLSFSTGYFLTDLAFIIWNFPALGG 130

Query: 133 LEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICN 192
           LEYVLHHGLS+FSI  +L+SG+A IYILMVLFTE TTPFVNLRWYLD AGLKSS +YI N
Sbjct: 131 LEYVLHHGLSLFSIIQSLLSGQAHIYILMVLFTEGTTPFVNLRWYLDTAGLKSSKLYIWN 190

Query: 193 GVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIA 252
           GVALF GWLVARI LF++ F HM  HFD+VK++FP+GFYSLLVVPP+L++MN+FWFWKIA
Sbjct: 191 GVALFFGWLVARIFLFMFLFTHMWTHFDEVKQVFPMGFYSLLVVPPVLSMMNLFWFWKIA 250

Query: 253 KGLIRTLSKTRHSR 266
           KG+++TLSK +HS+
Sbjct: 251 KGMVKTLSKAKHSK 264

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145378|ref|XP_002325620.1| predicted protein [Populus trichocarpa] gi|222862495|gb|EEF00002.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 187/253 (73%), Positives = 218/253 (86%)

Query: 14  SPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFI 73
           + +KQF+ L SV SGII C IVYKLT  +S L FKGY KL++ +K+EWNNRGFSTFHA  
Sbjct: 13  TATKQFHLLSSVLSGIIACGIVYKLTAFVSRLYFKGYGKLTDAQKVEWNNRGFSTFHALF 72

Query: 74  ASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGL 133
            ++ASLYLLLLS LF ED  DEL++NRTS+LS + LGISIGYFLSDLAMIL+ +PALGG+
Sbjct: 73  VASASLYLLLLSGLFYEDSRDELVVNRTSTLSNSTLGISIGYFLSDLAMILFHFPALGGM 132

Query: 134 EYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNG 193
           EY+LHHGLSMFSI LAL+SG+AQIYILMVLF+EITTPFVNLRWYLDVAG KSS +YI NG
Sbjct: 133 EYLLHHGLSMFSIILALLSGQAQIYILMVLFSEITTPFVNLRWYLDVAGQKSSKLYIWNG 192

Query: 194 VALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAK 253
           V LF+GWLVARILLFI+FF HM IHFDQVK+IFPLGFYS+LV+P  LA+MNV WFWKI K
Sbjct: 193 VLLFMGWLVARILLFIFFFSHMFIHFDQVKQIFPLGFYSILVIPGTLAVMNVLWFWKIVK 252

Query: 254 GLIRTLSKTRHSR 266
           GL++TLSK RH +
Sbjct: 253 GLMKTLSKARHGQ 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553204|ref|XP_003544948.1| PREDICTED: transmembrane protein 56-B-like [Glycine max]

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 166/256 (64%), Positives = 212/256 (82%)

Query: 11  DNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFH 70
           D  +PSK   WL S+FSGII+C + Y  T I+S L FKGY KLS+E+K+EWNNRGFSTFH
Sbjct: 14  DYATPSKVVLWLASIFSGIILCVLAYTSTAILSSLLFKGYGKLSSEEKIEWNNRGFSTFH 73

Query: 71  AFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPAL 130
           A   S+AS YLL+LSD+F+ +  D+++INR+S LS+TVLG+SIGYFL+DLAMILW +PAL
Sbjct: 74  ALFVSSASFYLLILSDVFNVNSQDDIVINRSSRLSDTVLGVSIGYFLTDLAMILWNFPAL 133

Query: 131 GGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYI 190
           GGLEYVLHHG+S+ SI L L+SG+  IYILMVLF+E TTPFVNLRWYLDVAGLKSS +YI
Sbjct: 134 GGLEYVLHHGISIGSITLCLLSGQVHIYILMVLFSESTTPFVNLRWYLDVAGLKSSKLYI 193

Query: 191 CNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWK 250
            NG+ALF GWLVARI LF++ F H+    D+VKE+F  GFY+L++VP +LA++N+FWFWK
Sbjct: 194 WNGIALFFGWLVARIFLFMFLFYHIGTRLDEVKEVFLFGFYTLIMVPSVLAVLNIFWFWK 253

Query: 251 IAKGLIRTLSKTRHSR 266
           IA G+++TL+K +HS+
Sbjct: 254 IASGMVKTLTKAKHSK 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224030039|gb|ACN34095.1| unknown [Zea mays] gi|414879974|tpg|DAA57105.1| TPA: hypothetical protein ZEAMMB73_198727 [Zea mays]

 Score =  346 bits (887), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 158/258 (61%), Positives = 205/258 (79%)

Query: 9   MADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFST 68
           M  N  P +Q  W  SV +GI+MC  VY++T  +S  CFK Y  L+N +K+EWNNRGFST
Sbjct: 1   MHGNFGPQEQILWPASVLAGIVMCGAVYQMTRHVSSRCFKCYSMLNNRQKVEWNNRGFST 60

Query: 69  FHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYP 128
            HA +A+  S YL+++SDLF+ED ++ +II+R S LS+ + G+SIGYFL+DL MI+  +P
Sbjct: 61  LHALVAAAVSFYLVMISDLFNEDAHNSIIIDRKSWLSDCMFGVSIGYFLTDLTMIMLYFP 120

Query: 129 ALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNI 188
           +LGG EY+LHHGLSM++I LAL+SGKA +YILMVLFTEITTPFVNLRWYLDVAG K+ N+
Sbjct: 121 SLGGNEYLLHHGLSMYAIGLALLSGKAHMYILMVLFTEITTPFVNLRWYLDVAGQKTCNL 180

Query: 189 YICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWF 248
           Y+ NGVALF+GWL+ARI+LFIY F HM  H DQ + IF LGFYSL+ VP ++A+MNVFWF
Sbjct: 181 YLYNGVALFVGWLIARIILFIYMFTHMYFHLDQARSIFSLGFYSLVAVPSVVAVMNVFWF 240

Query: 249 WKIAKGLIRTLSKTRHSR 266
           WKI KG+++TLS+ +HS 
Sbjct: 241 WKILKGMVKTLSRRKHSE 258

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2122814	266	AT4G10360 "AT4G10360" [Arabido	0.958	0.958	0.584	7.6e-80
TAIR|locus:504955499	268	AT4G19645 "AT4G19645" [Arabido	0.894	0.888	0.510	4.3e-61
TAIR|locus:2197480	278	AT1G31300 "AT1G31300" [Arabido	0.894	0.856	0.478	1.4e-57
UNIPROTKB|F1NSV0	261	TMEM56 "Uncharacterized protei	0.864	0.881	0.276	6.3e-21
ZFIN|ZDB-GENE-090402-1	276	tmem56a "transmembrane protein	0.936	0.902	0.259	1.2e-19
MGI|MGI:1923195	276	Tmem56 "transmembrane protein	0.894	0.862	0.254	1.9e-19
UNIPROTKB|Q96MV1	263	TMEM56 "Transmembrane protein	0.800	0.809	0.262	2.5e-19
RGD|1563041	263	Tmem56 "transmembrane protein	0.800	0.809	0.253	2.5e-19
ZFIN|ZDB-GENE-070912-350	263	si:dkey-10f21.4 "si:dkey-10f21	0.781	0.790	0.264	2.2e-18
UNIPROTKB|E2RSK2	263	TMEM56 "Uncharacterized protei	0.890	0.901	0.258	5.8e-18

TAIR|locus:2122814 AT4G10360 "AT4G10360" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 149/255 (58%), Positives = 184/255 (72%)

Query:    11 DNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFH 70
             D    S+Q   L S+ SG +MC IVY LT  IS L F  Y KL ++ ++EWNNRGFSTFH
Sbjct:     7 DGFVSSRQLLLLASICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFH 66

Query:    71 AFIASTAXXXXXXXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPAL 130
             A   S A                 + +IN T+ LSE+V+GIS+GYFL+DLAMI W +P L
Sbjct:    67 AVFTSVASIYFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTL 126

Query:   131 GGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYI 190
             GG+EYV HH LSMF+I L++ SG++Q YI +VL +E TTPFVNLRWYLD +G K S  Y 
Sbjct:   127 GGIEYVFHHFLSMFAIILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGSKAYT 186

Query:   191 CNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWK 250
              NG+ALFLGWLVAR+LLFI+FFVHM +HF QVK++FPLGFYSLL +PP LA+MN+ WFWK
Sbjct:   187 LNGIALFLGWLVARVLLFIFFFVHMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLLWFWK 246

Query:   251 IAKGLIRTLSKTRHS 265
             I KGLI+TLSK + S
Sbjct:   247 ITKGLIKTLSKAKTS 261

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:504955499 AT4G19645 "AT4G19645" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 122/239 (51%), Positives = 156/239 (65%)

Query:    24 SVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHA-FIASTAXXXXX 82
             SV  GI +C +VY LT + S +  K Y  L+  K++EWNNRG ST HA FI+  A     
Sbjct:    28 SVLVGICLCKLVYDLTELFSSIHVKSYSALTKIKRIEWNNRGISTVHAIFISFMALYFAF 87

Query:    83 XXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLS 142
                          L + R S LS   LG+S+GYFL+DL MI WLYP+LGG EY+LHH LS
Sbjct:    88 FSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGYFLADLGMIFWLYPSLGGSEYILHHCLS 147

Query:   143 MFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLV 202
               ++  +L SG+AQ+Y  MVL +E+TTP +NLRWYLD+AGLK S  Y+ NGVA+F  WL 
Sbjct:   148 GTAVAYSLFSGEAQLYTYMVLISEVTTPEINLRWYLDIAGLKRSKAYLVNGVAIFFAWLT 207

Query:   203 ARILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSK 261
             ARILLFIY F H+  H+DQV E+   G+  + VVP  L++MN+ WF KI KGL +TL K
Sbjct:   208 ARILLFIYMFYHVYTHYDQVIEMHTFGYLLVFVVPISLSVMNLIWFGKIVKGLKKTLEK 266

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2197480 AT1G31300 "AT1G31300" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 114/238 (47%), Positives = 153/238 (64%)

Query:    24 SVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXXX 83
             SV +GI +C +VY L   IS    K Y  L+  +++EWNNRG ST HA   S        
Sbjct:    37 SVLTGIFLCKVVYDLCHFISNSHSKTYIILTKIQRIEWNNRGISTVHAIFISAMSLYFVF 96

Query:    84 XXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSM 143
                        +L++ R+S LS   LGISIGYFL+DL MI W YP+LGG+EY++HH LS 
Sbjct:    97 WSDLFSDRWHNDLVVFRSSRLSSLGLGISIGYFLADLGMIFWKYPSLGGIEYIVHHSLSG 156

Query:   144 FSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVA 203
              ++  +L SG+ Q+Y  MVL +EITTP +NLRWYLD AG+K S  Y+ NGV +FL WLVA
Sbjct:   157 VAVAYSLFSGEGQLYTYMVLISEITTPEINLRWYLDTAGMKKSLAYVVNGVFIFLAWLVA 216

Query:   204 RILLFIYFFVHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSK 261
             RILLFIY F H+ +H++QV  +   G+  +  VP  L +MN+ WF KI +G+ +TL+K
Sbjct:   217 RILLFIYMFYHVYLHYNQVMRMHIFGYVLVFGVPAALGVMNLIWFGKIVRGVKKTLAK 274

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NSV0 TMEM56 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 67/242 (27%), Positives = 116/242 (47%)

Query:    23 VSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXX 82
             +++ S  I   + + L+  +S     G+  LS ++K+EWN+R  STFHA +         
Sbjct:    10 IALASFTIFQLLFHVLSSWVSTRITPGFSNLSQKRKIEWNSRTVSTFHALVVGGFCLYIL 69

Query:    83 XXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLS 142
                            +    S+ +  + I+ GY +SDL +I+  + A+G   +V+HH  +
Sbjct:    70 LYDEAVNADH-----LWGDPSIVKLNIAITTGYLISDLLLIICYWKAIGDKFFVIHHLAA 124

Query:   143 MFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWL 201
             +++ +  L  G    +    L  E +TPFVN RW+ +V G  KSS   + NGV + + + 
Sbjct:   125 LYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFFEVLGYPKSSKANMINGVLMTVVFF 184

Query:   202 VARILLFIYFFVHMAIHFDQVKEIFP-LGF--YSLLVVPPM-LAIMNVFWFWKIAKGLIR 257
             V RI +   ++  +   F    E F  LGF   S  ++  + L +MN+ W  KI KG  +
Sbjct:   185 VVRIAVMPMYYSRVFSSFGT--EGFQRLGFAAQSAWIISSIVLDVMNLMWMVKITKGCYK 242

Query:   258 TL 259
              +
Sbjct:   243 VI 244

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-090402-1 tmem56a "transmembrane protein 56a" [Danio rerio (taxid:7955)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 67/258 (25%), Positives = 119/258 (46%)

Query:    13 VSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAF 72
             + P  Q   L+SV S      + + ++   S     G+ KL++++K+EWN+R  ST HA 
Sbjct:    14 MDPFSQLILLISVVSFFFFQWLFHSVSPWASSRISPGFLKLTHKQKIEWNSRTVSTLHAL 73

Query:    73 IASTAXXXXXXXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLS-DLAMILWLYPALG 131
             +                        +    +L +  + I+ GY +S DL +I + + A+G
Sbjct:    74 LVGLFCLYILFFDEAVNQDP-----VWGDPTLVKINVSITTGYLISADLLLIFYYWRAIG 128

Query:   132 GLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGL-KSSNIYI 190
                +V+HH  ++++ +  L  G    +    L  E +TP VN RW+ +V G  KSS   +
Sbjct:   129 DKFFVIHHLAALYAYYYVLGQGMLPYFANFRLLAEFSTPCVNQRWFFEVLGYPKSSRPNM 188

Query:   191 CNGVALFLGWLVARILLFIYFFVHM-AIHFDQVKEIFPLGFYSLLVVPPM-LAIMNVFWF 248
              NGV +   + + RI +   ++  M +++  +       G  S  +   + L IMNV W 
Sbjct:   189 ANGVLMAAVFFLVRIAVMPVYYSRMCSVYGTEAFYRVSFGGRSAWIFSSICLDIMNVMWM 248

Query:   249 WKIAKGLIRTLSKTRHSR 266
              KI +G  + L  +R S+
Sbjct:   249 HKIFRGCYKVLQSSRKSK 266

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1923195 Tmem56 "transmembrane protein 56" [Mus musculus (taxid:10090)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 64/251 (25%), Positives = 120/251 (47%)

Query:    22 LVSVFSGIIMCTIVYKLTGI-ISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAXXX 80
             + +V S  ++  I++       S     GY  LS +KK+EWN+R  ST H+ +       
Sbjct:    22 ICTVCSSFVVFQILFHFVSYWFSARVSSGYNSLSIDKKIEWNSRVVSTCHSLLVGI---- 77

Query:    81 XXXXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHG 140
                           + +    + ++  +   S GY +SDL +IL+ +  +G   +++HH 
Sbjct:    78 FGLYLFFFDEATITDPLWGDPTYVNINIATAS-GYLISDLLIILFNWKVIGDKFFIIHHC 136

Query:   141 LSMFSIFLALVSGKAQIYILMV-LFTEITTPFVNLRWYLDVAGL-KSSNIYICNGVALFL 198
               + + +  L +G A  YI    L  E+++PFVN RW+ +     K S   + NG+ + +
Sbjct:   137 AGLTAYYFVLTTG-ALAYIANFRLLAELSSPFVNQRWFFEALKYPKFSKANVINGILMTV 195

Query:   199 GWLVARILLF--IYFFVHMAIHFDQVKEIFPLGFYSLLVVP-PMLAIMNVFWFWKIAKGL 255
              + + RI+    +YFF++ +++  +    F     S+ +V   +L +MN+ W  KI KG 
Sbjct:   196 VFFIVRIISIPPMYFFLY-SVYGTEPYIRFGFVIQSVWIVTCVILDVMNIMWMIKITKGC 254

Query:   256 IRTLSKTRHSR 266
             I+ +S  R  +
Sbjct:   255 IKVISLIRQEK 265

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96MV1 TMEM56 "Transmembrane protein 56" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 58/221 (26%), Positives = 106/221 (47%)

Query:    49 GYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXXXXXXXXXXXXXXELIINRTSSLSETV 108
             G+  LS +KK+EWN+R  ST H+ +                        +    SL+   
Sbjct:    37 GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLFDEATKADP-----LWGGPSLANVN 91

Query:   109 LGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEIT 168
             + I+ GY +SDL++I+  +  +G   +++HH  S+++ +L L +G         L  E++
Sbjct:    92 IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151

Query:   169 TPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVARILLFI--YFFVHMAIHFDQVKEI 225
             +PFVN RW+ +     K S   + NG+ + + + + RI   +  Y F++     +    +
Sbjct:   152 SPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRIASMLPHYGFMYSVYGTEPYIRL 211

Query:   226 FPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTRHSR 266
               L   S ++   +L +MNV W  KI+KG I+ +S  R  +
Sbjct:   212 GVLIQLSWVISCVVLDVMNVMWMIKISKGCIKVISHIRQEK 252

GO:0016021 "integral to membrane" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1563041 Tmem56 "transmembrane protein 56" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 56/221 (25%), Positives = 103/221 (46%)

Query:    49 GYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXXXXXXXXXXXXXXELIINRTSSLSETV 108
             GY  LS EKK+EWN+R  ST H+ +                        +    SL +  
Sbjct:    37 GYNSLSTEKKIEWNSRVVSTCHSMLVGIFGLYLFFFDEATIADP-----LWGDPSLVKIN 91

Query:   109 LGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEIT 168
             +  + GY +SDL +IL+ +  +G   +++HH   + + +  L  G         L  E++
Sbjct:    92 ISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIAYYFVLKIGVLAYIANFRLLAELS 151

Query:   169 TPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVARILLF--IYFFVHMAIHFDQVKEI 225
             +PFVN RW+ +V    K S + + NG+ + + + + RI+    +YF+V+     +    +
Sbjct:   152 SPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIVRIIAIPPMYFYVYSVYGTEPYIRL 211

Query:   226 FPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTRHSR 266
               +  +  +    +L +MN+ W  KI KG ++ +S  R  +
Sbjct:   212 GSVVHFVWISSCIVLDVMNIMWMIKITKGCMKVISLIRQEK 252

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070912-350 si:dkey-10f21.4 "si:dkey-10f21.4" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 58/219 (26%), Positives = 105/219 (47%)

Query:    45 LCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXXXXXXXXXXXXXXELIINRTSSL 104
             LC  G+ +LS  +K EWN+R  ST HA +                        +   ++L
Sbjct:    34 LC-GGFLRLSPTQKTEWNSRAVSTVHALVVGLFCLYIYIFDESIQKDP-----VWGDATL 87

Query:   105 SETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF 164
              +  + ++ GY +SDL ++   + ++G   +V+HH  ++++ +  L  G    +    L 
Sbjct:    88 VKLNVAVTSGYLMSDLLLMFTSWESIGEKYFVIHHFAALYAYYYVLSQGILPYFANFRLL 147

Query:   165 TEITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHF--DQ 221
             +E +TPFVN RW+  + G  K S   + NGVA+   + + RI +   ++ HM   F  D 
Sbjct:   148 SEFSTPFVNQRWFFHMLGYHKLSKPSLLNGVAMAFTFFLVRIAVIPGYYSHMYSVFGTDD 207

Query:   222 VKEIFPLGFYSLLVVPPM-LAIMNVFWFWKIAKGLIRTL 259
                + P+G     V+  + L +MN+ W  +I +G ++ L
Sbjct:   208 FYRL-PIGARCAWVISSVSLDVMNIMWMRRIIRGCLKVL 245

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2RSK2 TMEM56 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 64/248 (25%), Positives = 112/248 (45%)

Query:    24 SVFSGIIMCTIV-YKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXX 82
             +VF+      ++ Y ++   S     G+  LS EKK+EWN+R  ST H+ +         
Sbjct:    11 TVFTSFFTFQLLFYFISFWFSAKVSPGFVSLSFEKKIEWNSRVVSTCHSLVVGLFGLYLF 70

Query:    83 XXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLS 142
                            +   SSL +  + I+ GY +SDL +++  +  +G   +++HH  +
Sbjct:    71 FFDEATMADP-----LWGDSSLVKVNISIATGYLISDLLILILYWKVIGDKYFIIHHCAA 125

Query:   143 MFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWL 201
             +++ +  L  G         L  E+++PFVN RW+ +     K S   + NG+ + + + 
Sbjct:   126 LYAYYYVLRYGVLASIGNFRLLAELSSPFVNQRWFFEALKYPKFSKANVINGILMTVVFF 185

Query:   202 VARILLFIYFFVHMAIHFDQVKEIFPLGFY---SLLVVPPMLAIMNVFWFWKIAKGLIRT 258
             + RI     F+ +M       +    LGF    S +    +L IMNV W  KI KG I+ 
Sbjct:   186 IVRIAPIPPFYSYMYSVLG-TEAYIRLGFLIQCSWISTCVVLDIMNVMWMIKITKGCIKV 244

Query:   259 LSKTRHSR 266
             +S  R  +
Sbjct:   245 ISFIRQEK 252

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
smart00724	205	smart00724, TLC, TRAM, LAG1 and CLN8 homology doma	6e-31
pfam03798	198	pfam03798, TRAM_LAG1_CLN8, TLC domain	7e-24

>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains

 Score =  113 bits (285), Expect = 6e-31
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 8/208 (3%)

Query: 57  KKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYF 116
           K  E +NR  S  H+ IA   +LY           Y     I   S L++     S+GYF
Sbjct: 2   KFNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLY----PIQGMSPLAKFYYLFSLGYF 57

Query: 117 LSDLAMILWLYPALG--GLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNL 174
           + DL  +L           E ++HH  ++  I L+ V    ++ +L++L  E++ PF++L
Sbjct: 58  IHDLVALLLFQDLKRKDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHL 117

Query: 175 RWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVK--EIFPLGFYS 232
           R  L+ AG K S +Y  N V   + + V R++LF +  + + +H+ Q +     PL +  
Sbjct: 118 RKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILTVTVHYAQAESGLFPPLLYLL 177

Query: 233 LLVVPPMLAIMNVFWFWKIAKGLIRTLS 260
            L++   L ++N++WF+ I +   + LS
Sbjct: 178 FLLLLLCLQLLNIYWFFLILRMARKLLS 205

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains. Length = 205

>gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain

 Score = 95.0 bits (237), Expect = 7e-24
 Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 10/201 (4%)

Query: 60  EWNNRGFSTFHAFIASTASLYLLLLSDLFSE-----DYYDELIINRTSSLSETVLGISIG 114
           ++N RG S  H  ++    LY+LL    F         Y + I+  TS+L +    I +G
Sbjct: 1   KFNERGVSLVHYLVSGILGLYVLLSEPWFWNPTWLWYPYPDRILGGTSALVKFYYLIQLG 60

Query: 115 YFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNL 174
           YFL DL ++L+ Y      E +LHH +++  I  +      ++ +L++L  E++ PF++L
Sbjct: 61  YFLHDLLVLLF-YEKRRKWEMLLHHIITLLLISFSYFYNFTRVGLLVLLLHELSDPFLHL 119

Query: 175 RWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVK--EIFPLGFYS 232
           R +L+  G K S   +   V   + + + R++L  +  +   +   ++         +Y 
Sbjct: 120 RKFLNYLGKKKSCDVLF--VLFLVSFFLVRLVLGPFLILLSILDEARLDIPGGPFNLYYI 177

Query: 233 LLVVPPMLAIMNVFWFWKIAK 253
            L +  +L ++N++WF+ I +
Sbjct: 178 FLALLLVLQLLNIYWFYLIIR 198

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
KOG4561	281	consensus Uncharacterized conserved protein, conta	100.0
PF03798	198	TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TL	100.0
smart00724	205	TLC TRAM, LAG1 and CLN8 homology domains. Protein	100.0
KOG4474	253	consensus Uncharacterized conserved protein [Funct	99.95
KOG1607	318	consensus Protein transporter of the TRAM (translo	99.64
COG5058	395	LAG1 Protein transporter of the TRAM (translocatin	99.44

>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2.9e-43  Score=302.67  Aligned_cols=254  Identities=36%  Similarity=0.564  Sum_probs=207.8

Q ss_pred             hHHhhhccCCCCcchhhHHHHHHHHHHHHHHHHHH---HHHHhhhccccCCCCccccccee-eeehhHHHHHHHHHHHHH
Q 024545            5 LLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLT---GIISVLCFKGYRKLSNEKKLEWN-NRGFSTFHAFIASTASLY   80 (266)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~l~---~~~s~~~~k~y~~l~~~~k~~w~-~r~vS~vHaiv~~~~al~   80 (266)
                      +.|.++++...+.+...+.....+++++.+.|.++   +..+....+.|+++++++|.+|| +|.+|++|+++++  ++|
T Consensus        12 ~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~hslv~~--s~y   89 (281)
T KOG4561|consen   12 LTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVHSLVSS--SLY   89 (281)
T ss_pred             ccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeehHhhhc--ccc
Confidence            35677888999999999999999999999999998   76666667899999999999999 9999999999998  788


Q ss_pred             HHhhcCCCCccccccccccccChhhHHHHHHH--HHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHhccchhhH
Q 024545           81 LLLLSDLFSEDYYDELIINRTSSLSETVLGIS--IGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIY  158 (266)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~GYfl~Dl~~~~~~~~~~~~~~~l~HH~~~~~~~~~~~~~~~~~~~  158 (266)
                      +++.+|.+..|.     ..++++.....-.-+  .||++.|+..+..+++..+|.+|++||+++..........|.++++
T Consensus        90 ~lf~~~~f~yD~-----~~~~~~~~~~~~~~~~g~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~~~~~~g~y~  164 (281)
T KOG4561|consen   90 FLFGTPYFHYDK-----ATGYSVVWSKHRDTSVGIGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCLLRRGVGQYY  164 (281)
T ss_pred             eeecCcccchhh-----hhccceeecceeeccccceEecccceeEEEEeeeecCeeEEeeHHHHhhhheeeEecCcccee
Confidence            888777776432     222222222222222  4599999975555677889999999998883333333455779999


Q ss_pred             HHHHHHHhcCchhhhHHHHHHHhCcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccccchhhHHhhh
Q 024545          159 ILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHF--DQVKEIFPLGFYSLLVV  236 (266)
Q Consensus       159 ~~~~ll~E~StpFl~lr~~l~~~g~~~s~~~~~n~~l~~~~Ff~~Ri~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~  236 (266)
                      +..++++|+||||+|+||+++++|.|+|++|++||++++++|+++||+..|+++++++..+  ....+..|.....+++.
T Consensus       165 ~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  244 (281)
T KOG4561|consen  165 AGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVLNQVPPFLPLFLLGL  244 (281)
T ss_pred             eeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988877433  33445556566677888


Q ss_pred             hHHHHHhHHHHHHHHHHHHHhhhccCCCC
Q 024545          237 PPMLAIMNVFWFWKIAKGLIRTLSKTRHS  265 (266)
Q Consensus       237 ~~~l~~LN~~Wf~~i~~~~~k~~~~~k~~  265 (266)
                      +..++++|+|||+||+|+++|.+.+.|++
T Consensus       245 ~~~L~v~Nl~Wf~km~~ga~K~~~~~~~~  273 (281)
T KOG4561|consen  245 NALLLVLNLYWFSKMVRGALKVLKKAKTS  273 (281)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCcccCC
Confidence            99999999999999999999999876554

>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices

Probab=100.00  E-value=2.2e-34  Score=240.82  Aligned_cols=193  Identities=32%  Similarity=0.537  Sum_probs=158.8

Q ss_pred             ceeeeehhHHHHHHHHHHHHHHHhhcCCCCccccccccccccChhhHHHHHHHHHHHHHHHHHHHHhccccC-ChhHHHH
Q 024545           60 EWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALG-GLEYVLH  138 (266)
Q Consensus        60 ~w~~r~vS~vHaiv~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYfl~Dl~~~~~~~~~~~-~~~~l~H  138 (266)
                      ||++|++|++||++++.+|++++..+|++.++. .|+...++++..+...++++|||++|+.++....++.+ ..+|++|
T Consensus         1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H   79 (198)
T PF03798_consen    1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDW-PDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH   79 (198)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhc-ccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence            699999999999999999999999877433221 23345556778888999999999999999997554443 3899999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHhcCchhhhHHHHHHHh-Cc-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024545          139 HGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVA-GL-KSSNIYICNGVALFLGWLVARILLFIYFFVHMA  216 (266)
Q Consensus       139 H~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl~lr~~l~~~-g~-~~s~~~~~n~~l~~~~Ff~~Ri~~~~~~~~~~~  216 (266)
                      |++++.++..++..+.+++++..++++|+||||+|+||++++. |. +++..+..|+++++++|+++|++.+|+..+..+
T Consensus        80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~  159 (198)
T PF03798_consen   80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVY  159 (198)
T ss_pred             HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888899999999999999999999999999999 77 688999999999999999999999999776666


Q ss_pred             Hhhcccc--ccccchhhHHhhhhHHHHHhHHHHHHHHHH
Q 024545          217 IHFDQVK--EIFPLGFYSLLVVPPMLAIMNVFWFWKIAK  253 (266)
Q Consensus       217 ~~~~~~~--~~~p~~~~~~~~~~~~l~~LN~~Wf~~i~~  253 (266)
                      .+..+.+  +..+...+...+...++++||++|+++|+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r  198 (198)
T PF03798_consen  160 WDVWPLPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR  198 (198)
T ss_pred             HHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5543311  112333345556678889999999999986

Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane

>smart00724 TLC TRAM, LAG1 and CLN8 homology domains

Probab=100.00  E-value=8e-34  Score=239.65  Aligned_cols=200  Identities=29%  Similarity=0.437  Sum_probs=164.9

Q ss_pred             ccccceeeeehhHHHHHHHHHHHHHHHhhcCCCCccccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcccc--CCh
Q 024545           56 EKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPAL--GGL  133 (266)
Q Consensus        56 ~~k~~w~~r~vS~vHaiv~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYfl~Dl~~~~~~~~~~--~~~  133 (266)
                      +|+.||++|++|.+||++++..+++....   +.+.. .++...+.++..+...++++|||++|+.++...++..  +++
T Consensus         1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~-~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~   76 (205)
T smart00724        1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPK-SLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK   76 (205)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCc-ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            47899999999999999999887765531   11111 1223567889999999999999999999998555433  379


Q ss_pred             hHHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcCchhhhHHHHHHHhCcCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024545          134 EYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFV  213 (266)
Q Consensus       134 ~~l~HH~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl~lr~~l~~~g~~~s~~~~~n~~l~~~~Ff~~Ri~~~~~~~~  213 (266)
                      +|++||++++.++..+...+..+.+...++++|+||||+|+||++++.|.++++.+..|+.+++++|+.+|++.+|+..+
T Consensus        77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~  156 (205)
T smart00724       77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLIL  156 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888888888899999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHhhcccc-c-cccchhhHHhhhhHHHHHhHHHHHHHHHHHHHhhh
Q 024545          214 HMAIHFDQVK-E-IFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTL  259 (266)
Q Consensus       214 ~~~~~~~~~~-~-~~p~~~~~~~~~~~~l~~LN~~Wf~~i~~~~~k~~  259 (266)
                      ....+..+.. + ..+.......+...++++||++|+++|+|++.|..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~  204 (205)
T smart00724      157 TVTVHYAQAESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL  204 (205)
T ss_pred             HHHhhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7766644321 1 12322344556778999999999999999999875

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.

>KOG4474 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=6.8e-28  Score=203.24  Aligned_cols=195  Identities=22%  Similarity=0.237  Sum_probs=161.9

Q ss_pred             CCCcccccceeeeehhHHHHHHHHHHHHHHHhhcCCCCccccccccccccChhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 024545           52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALG  131 (266)
Q Consensus        52 ~l~~~~k~~w~~r~vS~vHaiv~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYfl~Dl~~~~~~~~~~~  131 (266)
                      .++..+|.+|.|+.||++||++++.++.+++..+|..     .++.+...++.+..+.++|+|||+||+++|..+.....
T Consensus        37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~-----~~~~~~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~  111 (253)
T KOG4474|consen   37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYDPEM-----VDDPITYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL  111 (253)
T ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhCccc-----ccCHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            4666779999999999999999999999999977642     33456677889999999999999999999996543345


Q ss_pred             ChhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcCchhhhHHHHHHHhCcCC-CchhhhhHHHHHHHHHHHHHHHHHH
Q 024545          132 GLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKS-SNIYICNGVALFLGWLVARILLFIY  210 (266)
Q Consensus       132 ~~~~l~HH~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl~lr~~l~~~g~~~-s~~~~~n~~l~~~~Ff~~Ri~~~~~  210 (266)
                      .+++++||++++.++..++.++++..++.+.+++|+||||+|+|.+++..|.++ ++.++++..++.++||++|++...+
T Consensus       112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~~~~  191 (253)
T KOG4474|consen  112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIPQIY  191 (253)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcccee
Confidence            689999999999999999999999889999999999999999999999999854 4469999999999999999998887


Q ss_pred             HHHHHHHhhccccccccchh-hHHhhhhHHHHHhHHHHHHHHHHHH
Q 024545          211 FFVHMAIHFDQVKEIFPLGF-YSLLVVPPMLAIMNVFWFWKIAKGL  255 (266)
Q Consensus       211 ~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~l~~LN~~Wf~~i~~~~  255 (266)
                      +.++...+.+.    .|... .+...+...+.+.|.+-++++++.-
T Consensus       192 l~~~~i~~~~~----~~~~~~~~~~gg~~~l~~~n~~l~~rll~sd  233 (253)
T KOG4474|consen  192 LTYFLIANAPF----LHWYLKLFALGGLLCLAVINTVLTLRLLASD  233 (253)
T ss_pred             EEEEEeeeCCC----cceehhHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence            66554444322    22211 1334556899999999999999875

>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=2.4e-14  Score=125.79  Aligned_cols=214  Identities=14%  Similarity=0.237  Sum_probs=157.4

Q ss_pred             cccCCCCcccccceeeeehhHHHHHHHHHHHHHHHhhcCCCCcc-ccccc-cccccChhhHHHHHHHHHHHHHHHHHHHH
Q 024545           48 KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED-YYDEL-IINRTSSLSETVLGISIGYFLSDLAMILW  125 (266)
Q Consensus        48 k~y~~l~~~~k~~w~~r~vS~vHaiv~~~~al~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~s~GYfl~Dl~~~~~  125 (266)
                      ..++.-+++.+.+..+..=..+--..+.+.|++++..+|.+.+. ...++ .-.+.++..+..-.+-+||..+-++....
T Consensus        76 ~~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al~~  155 (318)
T KOG1607|consen   76 LRLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPDQTLPPSFKAYYLLEAGFYIQLLFALFL  155 (318)
T ss_pred             HhcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCCCCCCHHHHHHHHHhhHHHHHHHHHHHh
Confidence            34444445555777888888889999999999999876765432 11111 11233566777788889999998888876


Q ss_pred             hccccCChhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcCchhhhHHHHHHHhCcCCCchhhhhHHHHHHHHHHHHH
Q 024545          126 LYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARI  205 (266)
Q Consensus       126 ~~~~~~~~~~l~HH~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl~lr~~l~~~g~~~s~~~~~n~~l~~~~Ff~~Ri  205 (266)
                      ..++++-.+|++||+++++....+...+....+.+...+++.|+++|.+.++++..+.+  .+-....++|+.+|+..|+
T Consensus       156 d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~RL  233 (318)
T KOG1607|consen  156 DEKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTRL  233 (318)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHHH
Confidence            55666778999999999999888888777777888889999999999999999988775  3334556788999999998


Q ss_pred             HHHHHHHHHHHH--hhccccccccchhhHHhhhhHHHHHhHHHHHHHHHHHHHhhhccCC
Q 024545          206 LLFIYFFVHMAI--HFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTR  263 (266)
Q Consensus       206 ~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~l~~LN~~Wf~~i~~~~~k~~~~~k  263 (266)
                      ...|.+....-.  +...-+...+...+.......++++||++|++.|+|++.|.+++++
T Consensus       234 ~~~p~wil~st~~~~~~~~~~~~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~g~  293 (318)
T KOG1607|consen  234 IYYPFWILRSTSREDFSLRQYQPKPSYYFFNCLLLALQLLHIYWFYLILRMAYRVIKRGM  293 (318)
T ss_pred             HHHHHHHHHHhHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            888875432211  1111111123334556667789999999999999999999998443

>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]

Probab=99.44  E-value=8.2e-13  Score=114.70  Aligned_cols=207  Identities=14%  Similarity=0.217  Sum_probs=145.7

Q ss_pred             CCC-cccccceeeeehhHHHHHHHHHHHHHHHhhcCCC--Cccccccc-cccccChhhHHHHHHHHHHHHHHHHHHHH--
Q 024545           52 KLS-NEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLF--SEDYYDEL-IINRTSSLSETVLGISIGYFLSDLAMILW--  125 (266)
Q Consensus        52 ~l~-~~~k~~w~~r~vS~vHaiv~~~~al~~l~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~s~GYfl~Dl~~~~~--  125 (266)
                      .+. +++..++.++.-+..--.+++..|+|++-.+|.+  +++...|+ -.++.++.-+..-.+-.||.+....+..+  
T Consensus       147 ~v~s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~~~~p~lfk~fYliqaafw~qQa~ilvLql  226 (395)
T COG5058         147 NVRSEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPVFYNPFLFKAFYLIQAAFWAQQACILVLQL  226 (395)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCccccCcHHHHHHHHHHHHHHHHHHhhheeee
Confidence            444 4444789999999999999999999999887764  33222221 12345677788888899999999555443  


Q ss_pred             hccccCChhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcCchhhhHHHHHHHhCcCCCchhhhhHHHHHHHHHHHHH
Q 024545          126 LYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARI  205 (266)
Q Consensus       126 ~~~~~~~~~~l~HH~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl~lr~~l~~~g~~~s~~~~~n~~l~~~~Ff~~Ri  205 (266)
                      ..++++-.+|+.||+++++.+..++..+....+.+....+++|+|||.+.+.++..|.   .+-.....+|+..|+..|-
T Consensus       227 EkprkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~---~l~~~iF~iFv~~wIysRH  303 (395)
T COG5058         227 EKPRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS---VLATFIFGIFVFIWIYSRH  303 (395)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHH
Confidence            3455667899999999999888777666555555667889999999999999999876   3333444568888999997


Q ss_pred             HHHHHHHHHHHHhhccc---cccccch-------hhHHhhhhHHHHHhHHHHHHHHHHHHHhhhcc
Q 024545          206 LLFIYFFVHMAIHFDQV---KEIFPLG-------FYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSK  261 (266)
Q Consensus       206 ~~~~~~~~~~~~~~~~~---~~~~p~~-------~~~~~~~~~~l~~LN~~Wf~~i~~~~~k~~~~  261 (266)
                      ....-..+..+......   +-..+.+       ..+..+....++.+|+||+..|+|.+.|.+.+
T Consensus       304 yln~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~~  369 (395)
T COG5058         304 YLNLKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIWE  369 (395)
T ss_pred             HHHHHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            66554444444432211   1111111       11233445689999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 36/285 (12%), Positives = 83/285 (29%), Gaps = 84/285 (29%)

Query: 3   SLL-LSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLT----GIISVLCFKGYRKLSNEK 57
            LL L     NV  +       + F+  + C I+  LT     +   L       +S   
Sbjct: 246 CLLVL----LNVQNA----KAWNAFN--LSCKIL--LTTRFKQVTDFLSAATTTHIS--- 290

Query: 58  KLEWNNRGFST------FHAFIASTAS-----------LYLLLLSDLFSE-----DYYDE 95
            L+ ++   +          ++                  L ++++   +     D +  
Sbjct: 291 -LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 96  LIINRTSSLSETVLGISI---------GYFLSDLAM-------------ILWLYPALGGL 133
           +  ++ +    T++  S+           F   L++             ++W       +
Sbjct: 350 VNCDKLT----TIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 134 EYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNG 193
             V++    +    L     K     +  ++ E+     N    L  + +   NI     
Sbjct: 405 MVVVNK---LHKYSLVEKQPKESTISIPSIYLELKVKLENEY-ALHRSIVDHYNIPKT-- 458

Query: 194 VALFLGWLVARILLFIYFFVHMAIHFDQVK-----EIFPLGFYSL 233
              F    +    L  YF+ H+  H   ++      +F + F   
Sbjct: 459 ---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00