Citrus Sinensis ID: 024581
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 265 | ||||||
| 255565888 | 263 | FGFR1 oncogene partner, putative [Ricinu | 0.992 | 1.0 | 0.879 | 1e-131 | |
| 224098113 | 263 | predicted protein [Populus trichocarpa] | 0.992 | 1.0 | 0.871 | 1e-129 | |
| 118482415 | 263 | unknown [Populus trichocarpa] | 0.992 | 1.0 | 0.867 | 1e-129 | |
| 225448741 | 265 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.992 | 0.857 | 1e-127 | |
| 224112929 | 265 | predicted protein [Populus trichocarpa] | 0.992 | 0.992 | 0.861 | 1e-127 | |
| 118484693 | 265 | unknown [Populus trichocarpa] | 0.992 | 0.992 | 0.857 | 1e-126 | |
| 357445055 | 265 | FGFR1 oncogene partner [Medicago truncat | 0.992 | 0.992 | 0.838 | 1e-126 | |
| 217073108 | 265 | unknown [Medicago truncatula] | 0.992 | 0.992 | 0.838 | 1e-125 | |
| 388519825 | 265 | unknown [Medicago truncatula] | 0.992 | 0.992 | 0.835 | 1e-125 | |
| 388496850 | 265 | unknown [Lotus japonicus] gi|388514119|g | 0.984 | 0.984 | 0.841 | 1e-124 |
| >gi|255565888|ref|XP_002523933.1| FGFR1 oncogene partner, putative [Ricinus communis] gi|223536863|gb|EEF38502.1| FGFR1 oncogene partner, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/265 (87%), Positives = 246/265 (92%), Gaps = 2/265 (0%)
Query: 1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS
Sbjct: 1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
Query: 61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
CN+RAKQLHASPSGRLLTALICEYLDWAQLNHT+KVYLPECNLQKD+WK ELKEFSSKNG
Sbjct: 61 CNERAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPECNLQKDSWKTELKEFSSKNG 120
Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAG 180
YD N+NGDS PLLLDVLEGFLKFEN SQ R TGRR +ES+S+ +SRN RRPSSSSVAG
Sbjct: 121 YDPNRNGDSGPLLLDVLEGFLKFENLSQGRGTGRRVSKAESLSNLDSRNVRRPSSSSVAG 180
Query: 181 GLPPLGRPIPASQASDRRAAGSSMSAYRKDEYNWRYDSDELSDDVVRASAALENLQLDRK 240
GLPPLGRP +SQ SDRR AGSSMS YRKDEYNWRYDSDEL ++V+RAS ALENLQLDRK
Sbjct: 181 GLPPLGRPA-SSQTSDRR-AGSSMSGYRKDEYNWRYDSDELPEEVMRASTALENLQLDRK 238
Query: 241 ARNLTTSWRHAGDGMSDDDGRPDHM 265
ARNLTTSWRHAGDG+SDDDGR DHM
Sbjct: 239 ARNLTTSWRHAGDGISDDDGRVDHM 263
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224098113|ref|XP_002311121.1| predicted protein [Populus trichocarpa] gi|222850941|gb|EEE88488.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|118482415|gb|ABK93130.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225448741|ref|XP_002281259.1| PREDICTED: uncharacterized protein LOC100265617 [Vitis vinifera] gi|297736461|emb|CBI25332.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224112929|ref|XP_002316335.1| predicted protein [Populus trichocarpa] gi|222865375|gb|EEF02506.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|118484693|gb|ABK94217.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357445055|ref|XP_003592805.1| FGFR1 oncogene partner [Medicago truncatula] gi|355481853|gb|AES63056.1| FGFR1 oncogene partner [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|217073108|gb|ACJ84913.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|388519825|gb|AFK47974.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|388496850|gb|AFK36491.1| unknown [Lotus japonicus] gi|388514119|gb|AFK45121.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 265 | ||||||
| TAIR|locus:2082662 | 260 | TON1A "AT3G55000" [Arabidopsis | 0.973 | 0.992 | 0.717 | 9.7e-96 | |
| TAIR|locus:505006399 | 257 | TON1B "AT3G55005" [Arabidopsis | 0.966 | 0.996 | 0.689 | 3.9e-92 | |
| UNIPROTKB|F1SBY0 | 522 | FGFR1OP "Uncharacterized prote | 0.709 | 0.360 | 0.296 | 1.1e-11 | |
| ZFIN|ZDB-GENE-090417-1 | 511 | fgfr1op "FGFR1 oncogene partne | 0.460 | 0.238 | 0.352 | 1.9e-10 | |
| UNIPROTKB|F1P288 | 376 | FGFR1OP "Uncharacterized prote | 0.456 | 0.321 | 0.343 | 1.9e-09 | |
| UNIPROTKB|O95684 | 399 | FGFR1OP "FGFR1 oncogene partne | 0.822 | 0.546 | 0.267 | 2.8e-09 | |
| UNIPROTKB|Q2YDD1 | 399 | FGFR1OP "FGFR1 oncogene partne | 0.452 | 0.300 | 0.333 | 1.1e-08 | |
| MGI|MGI:1922546 | 399 | Fgfr1op "Fgfr1 oncogene partne | 0.452 | 0.300 | 0.333 | 1.1e-08 | |
| RGD|1583370 | 399 | Fgfr1op "Fgfr1 oncogene partne | 0.452 | 0.300 | 0.333 | 1.1e-08 | |
| UNIPROTKB|Q4V7C1 | 399 | Fgfr1op "FGFR1 oncogene partne | 0.452 | 0.300 | 0.333 | 1.1e-08 |
| TAIR|locus:2082662 TON1A "AT3G55000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 188/262 (71%), Positives = 219/262 (83%)
Query: 1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE +EG PPALLGS
Sbjct: 1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGPPPALLGS 60
Query: 61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
CNDRA++LHASPSGRLL+ALICEYLDWAQLNHT+ VY PE NL KD+WK+EL++F+S NG
Sbjct: 61 CNDRARKLHASPSGRLLSALICEYLDWAQLNHTLIVYQPESNLPKDSWKSELRDFNSNNG 120
Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQAR-ITGRRQPDSESMSHFESRNARRPSSSSVA 179
++LN+NGDS PLLLDVLEGFLKFE+ +Q + RR ++ES S ESRN R SS+S
Sbjct: 121 FELNRNGDSGPLLLDVLEGFLKFESMTQGMGSSSRRDSETESSSSLESRNPPRRSSAS-- 178
Query: 180 GGLPPLGRPIPASQASDRRAAGSSMSAYRKDEYNWRYDSDELSDDVVRASAALENLQLDR 239
LPP RP+ ASQASDRRA G S S YRKDE+NWR + + ++V RASAALENLQLDR
Sbjct: 179 DSLPPQRRPVSASQASDRRA-GLSTSGYRKDEFNWRQGNQDTHEEVTRASAALENLQLDR 237
Query: 240 KARNLTTSWRHAGDGMSDDDGR 261
K RNLT+SWR+ DG ++++GR
Sbjct: 238 KTRNLTSSWRNVRDGTNEEEGR 259
|
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| TAIR|locus:505006399 TON1B "AT3G55005" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SBY0 FGFR1OP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-090417-1 fgfr1op "FGFR1 oncogene partner" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P288 FGFR1OP "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O95684 FGFR1OP "FGFR1 oncogene partner" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q2YDD1 FGFR1OP "FGFR1 oncogene partner" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:1922546 Fgfr1op "Fgfr1 oncogene partner" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1583370 Fgfr1op "Fgfr1 oncogene partner" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4V7C1 Fgfr1op "FGFR1 oncogene partner" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 265 | |||
| pfam09398 | 81 | pfam09398, FOP_dimer, FOP N terminal dimerisation | 3e-04 |
| >gnl|CDD|150162 pfam09398, FOP_dimer, FOP N terminal dimerisation domain | Back alignment and domain information |
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Score = 38.3 bits (89), Expect = 3e-04
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKN- 119
N+ K+ + GRL+ LI E+L + L+ T+ V+ PE +L + + +E +K
Sbjct: 5 VNENLKKFLNTKDGRLVAELIREFLQFFNLDFTLAVFQPEASLLE---GLDGRENLAKEL 61
Query: 120 GYDLNKNGDSAPLLLDVL 137
G +++G + PLLL+V+
Sbjct: 62 GIVESESGKNKPLLLEVI 79
|
Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to subcellular structures. This domain includes a Lis-homology motif. It forms an alpha helical bundle and is involved in dimerisation. Length = 81 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 265 | |||
| PF09398 | 81 | FOP_dimer: FOP N terminal dimerisation domain; Int | 99.87 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 97.21 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 96.16 |
| >PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes | Back alignment and domain information |
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Probab=99.87 E-value=3.5e-23 Score=160.78 Aligned_cols=77 Identities=27% Similarity=0.530 Sum_probs=61.0
Q ss_pred CcccccccCCCchhHHHHHHHHHHHHHcCCccccchhccccCCchHHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHH
Q 024581 61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEG 139 (265)
Q Consensus 61 ~N~~~k~i~~s~eg~LineLI~EYLef~gl~yTLSVF~pESgl~~~~l~rEl~~L~~~LGL~~n~~~~~~PLL~qLLe~ 139 (265)
||+++|+++.+++|+|||+||+|||+||||+||+|||.+|||+++..+.| +.||++|||.++..+.+.||||.||++
T Consensus 5 ~ne~lkk~l~t~eg~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~~~~R--~~L~~eLgi~~~~~~~~~PLL~~lv~~ 81 (81)
T PF09398_consen 5 VNENLKKFLSTKEGRLINELIREYLEFNNLDYTLSVFQPESGQPEEPLDR--EFLARELGISEDENSKSVPLLYELVSR 81 (81)
T ss_dssp --HHHHHHHTSHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT----H--HHHHHHCT----CCCCTS-HHHHHHHC
T ss_pred cchHHHHHhcCchhHHHHHHHHHHHHHcCCccHHHHHhhccCCCCCcCCH--HHHHHHcCCCCCCCCCCCCchHHHHhC
Confidence 89999999999999999999999999999999999999999999987776 689999999998878899999999973
|
This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A. |
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
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| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 265 | |||
| 2d68_A | 82 | FOP, FGFR1OP; alpha helical bundle, dimer, cell cy | 6e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-08 |
| >2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens} Length = 82 | Back alignment and structure |
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Score = 56.5 bits (136), Expect = 6e-11
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 62 NDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGY 121
N+ K+ + GRL+ +L+ E+L + L+ T+ V+ PE + + E + G
Sbjct: 6 NESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRE--NLARDLGI 63
Query: 122 DLNKNGDSAPLLLDVLEGF 140
+ PLLL+V+ +
Sbjct: 64 IEAEGTVGGPLLLEVIRRW 82
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 265 | |||
| 2d68_A | 82 | FOP, FGFR1OP; alpha helical bundle, dimer, cell cy | 99.87 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 85.06 |
| >2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-23 Score=160.17 Aligned_cols=77 Identities=25% Similarity=0.442 Sum_probs=70.3
Q ss_pred CcccccccCCCchhHHHHHHHHHHHHHcCCccccchhccccCCchHHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHH
Q 024581 61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEG 139 (265)
Q Consensus 61 ~N~~~k~i~~s~eg~LineLI~EYLef~gl~yTLSVF~pESgl~~~~l~rEl~~L~~~LGL~~n~~~~~~PLL~qLLe~ 139 (265)
||+++|+++++++|+|+++||+|||+|+||+||++||+||||+++.+..| +.|+++||+..+..+.+.|||+.||++
T Consensus 5 ~N~~~k~~~~s~~GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~~~~R--~~La~eLgl~~~~~~~~~PLL~~ll~~ 81 (82)
T 2d68_A 5 VNESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGR--ENLARDLGIIEAEGTVGGPLLLEVIRR 81 (82)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC---CCH--HHHHHHTTCCCCTTTTTSCHHHHHHHH
T ss_pred ccHHHHHHHcCcccHHHHHHHHHHHHHcCCcchHHhhhhccCCCCCCCCH--HHHHHHcCCCCCCCCCCCCcHHHHHhh
Confidence 99999999999999999999999999999999999999999999777776 579999999988888899999999986
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00