Citrus Sinensis ID: 024581


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAGGLPPLGRPIPASQASDRRAAGSSMSAYRKDEYNWRYDSDELSDDVVRASAALENLQLDRKARNLTTSWRHAGDGMSDDDGRPDHM
cHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEcccccHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHcHcccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRviekdeglppallgscndrakqlhaspsgRLLTALICEYLDWAQLNHTMKvylpecnlqKDAWKAELKEfsskngydlnkngdsaPLLLDVLEGFLKFENssqaritgrrqpdsesmshfesrnarrpssssvagglpplgrpipasqasdrraagssmsayrkdeynwrydsdelsDDVVRASAALENLQLDRKarnlttswrhagdgmsdddgrpdhm
mddytremmdlktlvtrtlekkgvlAKIRAELRASVfeaieeedrviekdeglpPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSkngydlnkNGDSAPLLLDVLEGFLKFENssqaritgrrqpdsesmshfesrnarrpssssvagglpplgrpipasqasdrraagssmsayrkdeynwryDSDELSDDVVRASAALenlqldrkarnlttswrhagdgmsdddgrpdhm
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAGGLPPLGRPIPASQASDRRAAGSSMSAYRKDEYNWRYDSDELSDDVVRASAALENLQLDRKARNLTTSWRHAGDGMSDDDGRPDHM
**********LKTLVTRTLEKKGVLAKIRAELRASVFEAIEE***V**************************SGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFS**NGYDLN***DSAPLLLDVLEGFLKF**********************************************************************WR**************************************************
****TREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEA********************************PSGRLLTALICEYLDWAQLNHTMKVYLPECN*****************************LLLDVL********************************************************************************************************************************
********MDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLKFENSS*******************************AGGLPPLGRPIP**************SAYRKDEYNWRYDSDELSDDVVRASAALENLQLDRKARNLTTSWRHAGDG***********
*DDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLKFENS***************************************************************DEYNWRYDSDELSDDVVRASAALENLQLDRKARNL*********************
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MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAGGLPPLGRPIPASQASDRRAAGSSMSAYRKDEYNWRYDxxxxxxxxxxxxxxxxxxxxxRKARNLTTSWRHAGDGMSDDDGRPDHM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
Q9FQ24257 Protein TONNEAU 1b OS=Ara yes no 0.950 0.980 0.692 1e-100
Q9FQ25260 Protein TONNEAU 1a OS=Ara no no 0.973 0.992 0.713 4e-99
O95684 399 FGFR1 oncogene partner OS yes no 0.332 0.220 0.375 1e-10
Q4R7V3 379 FGFR1 oncogene partner OS N/A no 0.332 0.232 0.375 2e-10
Q2YDD1 399 FGFR1 oncogene partner OS yes no 0.332 0.220 0.375 2e-10
Q66JX5 399 FGFR1 oncogene partner OS no no 0.320 0.213 0.376 2e-10
Q4V7C1 399 FGFR1 oncogene partner OS yes no 0.320 0.213 0.376 2e-10
Q4V7R8169 LisH domain-containing pr N/A no 0.403 0.633 0.313 3e-06
Q9CZS3174 LisH domain-containing pr no no 0.543 0.827 0.25 0.0001
Q96NB1174 LisH domain-containing pr no no 0.407 0.620 0.278 0.0001
>sp|Q9FQ24|TON1B_ARATH Protein TONNEAU 1b OS=Arabidopsis thaliana GN=TON1B PE=1 SV=1 Back     alignment and function desciption
 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/260 (69%), Positives = 214/260 (82%), Gaps = 8/260 (3%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE +EGLPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGLPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRA+QLHASPSGRLL+ALICEYLDWAQLNHT+KVY PECN  KD+WK+E+++FS  NG
Sbjct: 61  CNDRARQLHASPSGRLLSALICEYLDWAQLNHTLKVYQPECNSAKDSWKSEIRDFSINNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQAR-ITGRRQPDSESMSHFESRNARRPSSSSVA 179
           Y+LN+N DS PLLLDVLEGFLKFEN +Q    + RR+ ++ES    ++RN   P  SS +
Sbjct: 121 YELNRNEDSRPLLLDVLEGFLKFENMTQVMGGSSRRESETESSLSLDTRNP--PRRSSAS 178

Query: 180 GGLPPLGRPIPASQASDRRAAGSSMSAYRKDEYNWRYDSDELSDDVVRASAALENLQLDR 239
             LP   R + ASQAS     G++ S YRKDE NWRYD++++ ++V+RAS ALENLQLDR
Sbjct: 179 DSLPHQRRSVSASQAS-----GAATSGYRKDESNWRYDTEDMPEEVMRASTALENLQLDR 233

Query: 240 KARNLTTSWRHAGDGMSDDD 259
           K RNLT+SWR+  DG S+++
Sbjct: 234 KTRNLTSSWRNVKDGTSEEE 253




Involved in the control of the dynamic organization of the cortical cytoskeleton. May play a role in the organization of microtubule arrays at the centrosome through interaction with centrin 1 (CEN1).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FQ25|TON1A_ARATH Protein TONNEAU 1a OS=Arabidopsis thaliana GN=TON1A PE=1 SV=1 Back     alignment and function description
>sp|O95684|FR1OP_HUMAN FGFR1 oncogene partner OS=Homo sapiens GN=FGFR1OP PE=1 SV=1 Back     alignment and function description
>sp|Q4R7V3|FR1OP_MACFA FGFR1 oncogene partner OS=Macaca fascicularis GN=FGFR1OP PE=2 SV=1 Back     alignment and function description
>sp|Q2YDD1|FR1OP_BOVIN FGFR1 oncogene partner OS=Bos taurus GN=FGFR1OP PE=2 SV=1 Back     alignment and function description
>sp|Q66JX5|FR1OP_MOUSE FGFR1 oncogene partner OS=Mus musculus GN=Fgfr1op PE=1 SV=1 Back     alignment and function description
>sp|Q4V7C1|FR1OP_RAT FGFR1 oncogene partner OS=Rattus norvegicus GN=Fgfr1op PE=2 SV=1 Back     alignment and function description
>sp|Q4V7R8|FOPNL_XENLA LisH domain-containing protein FOPNL OS=Xenopus laevis GN=Fopnl PE=2 SV=1 Back     alignment and function description
>sp|Q9CZS3|FOPNL_MOUSE LisH domain-containing protein FOPNL OS=Mus musculus GN=Fopnl PE=2 SV=1 Back     alignment and function description
>sp|Q96NB1|FOPNL_HUMAN LisH domain-containing protein FOPNL OS=Homo sapiens GN=FOPNL PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
255565888263 FGFR1 oncogene partner, putative [Ricinu 0.992 1.0 0.879 1e-131
224098113263 predicted protein [Populus trichocarpa] 0.992 1.0 0.871 1e-129
118482415263 unknown [Populus trichocarpa] 0.992 1.0 0.867 1e-129
225448741265 PREDICTED: uncharacterized protein LOC10 0.992 0.992 0.857 1e-127
224112929265 predicted protein [Populus trichocarpa] 0.992 0.992 0.861 1e-127
118484693265 unknown [Populus trichocarpa] 0.992 0.992 0.857 1e-126
357445055265 FGFR1 oncogene partner [Medicago truncat 0.992 0.992 0.838 1e-126
217073108265 unknown [Medicago truncatula] 0.992 0.992 0.838 1e-125
388519825265 unknown [Medicago truncatula] 0.992 0.992 0.835 1e-125
388496850265 unknown [Lotus japonicus] gi|388514119|g 0.984 0.984 0.841 1e-124
>gi|255565888|ref|XP_002523933.1| FGFR1 oncogene partner, putative [Ricinus communis] gi|223536863|gb|EEF38502.1| FGFR1 oncogene partner, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/265 (87%), Positives = 246/265 (92%), Gaps = 2/265 (0%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CN+RAKQLHASPSGRLLTALICEYLDWAQLNHT+KVYLPECNLQKD+WK ELKEFSSKNG
Sbjct: 61  CNERAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPECNLQKDSWKTELKEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAG 180
           YD N+NGDS PLLLDVLEGFLKFEN SQ R TGRR   +ES+S+ +SRN RRPSSSSVAG
Sbjct: 121 YDPNRNGDSGPLLLDVLEGFLKFENLSQGRGTGRRVSKAESLSNLDSRNVRRPSSSSVAG 180

Query: 181 GLPPLGRPIPASQASDRRAAGSSMSAYRKDEYNWRYDSDELSDDVVRASAALENLQLDRK 240
           GLPPLGRP  +SQ SDRR AGSSMS YRKDEYNWRYDSDEL ++V+RAS ALENLQLDRK
Sbjct: 181 GLPPLGRPA-SSQTSDRR-AGSSMSGYRKDEYNWRYDSDELPEEVMRASTALENLQLDRK 238

Query: 241 ARNLTTSWRHAGDGMSDDDGRPDHM 265
           ARNLTTSWRHAGDG+SDDDGR DHM
Sbjct: 239 ARNLTTSWRHAGDGISDDDGRVDHM 263




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098113|ref|XP_002311121.1| predicted protein [Populus trichocarpa] gi|222850941|gb|EEE88488.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118482415|gb|ABK93130.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225448741|ref|XP_002281259.1| PREDICTED: uncharacterized protein LOC100265617 [Vitis vinifera] gi|297736461|emb|CBI25332.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112929|ref|XP_002316335.1| predicted protein [Populus trichocarpa] gi|222865375|gb|EEF02506.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484693|gb|ABK94217.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357445055|ref|XP_003592805.1| FGFR1 oncogene partner [Medicago truncatula] gi|355481853|gb|AES63056.1| FGFR1 oncogene partner [Medicago truncatula] Back     alignment and taxonomy information
>gi|217073108|gb|ACJ84913.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388519825|gb|AFK47974.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388496850|gb|AFK36491.1| unknown [Lotus japonicus] gi|388514119|gb|AFK45121.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:2082662260 TON1A "AT3G55000" [Arabidopsis 0.973 0.992 0.717 9.7e-96
TAIR|locus:505006399257 TON1B "AT3G55005" [Arabidopsis 0.966 0.996 0.689 3.9e-92
UNIPROTKB|F1SBY0 522 FGFR1OP "Uncharacterized prote 0.709 0.360 0.296 1.1e-11
ZFIN|ZDB-GENE-090417-1 511 fgfr1op "FGFR1 oncogene partne 0.460 0.238 0.352 1.9e-10
UNIPROTKB|F1P288 376 FGFR1OP "Uncharacterized prote 0.456 0.321 0.343 1.9e-09
UNIPROTKB|O95684 399 FGFR1OP "FGFR1 oncogene partne 0.822 0.546 0.267 2.8e-09
UNIPROTKB|Q2YDD1 399 FGFR1OP "FGFR1 oncogene partne 0.452 0.300 0.333 1.1e-08
MGI|MGI:1922546 399 Fgfr1op "Fgfr1 oncogene partne 0.452 0.300 0.333 1.1e-08
RGD|1583370 399 Fgfr1op "Fgfr1 oncogene partne 0.452 0.300 0.333 1.1e-08
UNIPROTKB|Q4V7C1 399 Fgfr1op "FGFR1 oncogene partne 0.452 0.300 0.333 1.1e-08
TAIR|locus:2082662 TON1A "AT3G55000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 188/262 (71%), Positives = 219/262 (83%)

Query:     1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
             MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE +EG PPALLGS
Sbjct:     1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGPPPALLGS 60

Query:    61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
             CNDRA++LHASPSGRLL+ALICEYLDWAQLNHT+ VY PE NL KD+WK+EL++F+S NG
Sbjct:    61 CNDRARKLHASPSGRLLSALICEYLDWAQLNHTLIVYQPESNLPKDSWKSELRDFNSNNG 120

Query:   121 YDLNKNGDSAPLLLDVLEGFLKFENSSQAR-ITGRRQPDSESMSHFESRNARRPSSSSVA 179
             ++LN+NGDS PLLLDVLEGFLKFE+ +Q    + RR  ++ES S  ESRN  R SS+S  
Sbjct:   121 FELNRNGDSGPLLLDVLEGFLKFESMTQGMGSSSRRDSETESSSSLESRNPPRRSSAS-- 178

Query:   180 GGLPPLGRPIPASQASDRRAAGSSMSAYRKDEYNWRYDSDELSDDVVRASAALENLQLDR 239
               LPP  RP+ ASQASDRRA G S S YRKDE+NWR  + +  ++V RASAALENLQLDR
Sbjct:   179 DSLPPQRRPVSASQASDRRA-GLSTSGYRKDEFNWRQGNQDTHEEVTRASAALENLQLDR 237

Query:   240 KARNLTTSWRHAGDGMSDDDGR 261
             K RNLT+SWR+  DG ++++GR
Sbjct:   238 KTRNLTSSWRNVRDGTNEEEGR 259




GO:0000226 "microtubule cytoskeleton organization" evidence=IMP;NAS
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0000913 "preprophase band assembly" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=IDA
GO:0005938 "cell cortex" evidence=IDA
GO:0009574 "preprophase band" evidence=IDA
GO:0030863 "cortical cytoskeleton" evidence=IDA
GO:0030865 "cortical cytoskeleton organization" evidence=IMP
GO:0030981 "cortical microtubule cytoskeleton" evidence=IDA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
TAIR|locus:505006399 TON1B "AT3G55005" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBY0 FGFR1OP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090417-1 fgfr1op "FGFR1 oncogene partner" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P288 FGFR1OP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O95684 FGFR1OP "FGFR1 oncogene partner" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2YDD1 FGFR1OP "FGFR1 oncogene partner" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1922546 Fgfr1op "Fgfr1 oncogene partner" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1583370 Fgfr1op "Fgfr1 oncogene partner" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4V7C1 Fgfr1op "FGFR1 oncogene partner" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FQ25TON1A_ARATHNo assigned EC number0.71370.97350.9923nono
Q9FQ24TON1B_ARATHNo assigned EC number0.69230.95090.9805yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
pfam0939881 pfam09398, FOP_dimer, FOP N terminal dimerisation 3e-04
>gnl|CDD|150162 pfam09398, FOP_dimer, FOP N terminal dimerisation domain Back     alignment and domain information
 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKN- 119
            N+  K+   +  GRL+  LI E+L +  L+ T+ V+ PE +L +     + +E  +K  
Sbjct: 5   VNENLKKFLNTKDGRLVAELIREFLQFFNLDFTLAVFQPEASLLE---GLDGRENLAKEL 61

Query: 120 GYDLNKNGDSAPLLLDVL 137
           G   +++G + PLLL+V+
Sbjct: 62  GIVESESGKNKPLLLEVI 79


Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to subcellular structures. This domain includes a Lis-homology motif. It forms an alpha helical bundle and is involved in dimerisation. Length = 81

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
PF0939881 FOP_dimer: FOP N terminal dimerisation domain; Int 99.87
PF0851327 LisH: LisH; InterPro: IPR013720 The LisH motif is 97.21
smart0066734 LisH Lissencephaly type-1-like homology motif. Alp 96.16
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes Back     alignment and domain information
Probab=99.87  E-value=3.5e-23  Score=160.78  Aligned_cols=77  Identities=27%  Similarity=0.530  Sum_probs=61.0

Q ss_pred             CcccccccCCCchhHHHHHHHHHHHHHcCCccccchhccccCCchHHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHH
Q 024581           61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEG  139 (265)
Q Consensus        61 ~N~~~k~i~~s~eg~LineLI~EYLef~gl~yTLSVF~pESgl~~~~l~rEl~~L~~~LGL~~n~~~~~~PLL~qLLe~  139 (265)
                      ||+++|+++.+++|+|||+||+|||+||||+||+|||.+|||+++..+.|  +.||++|||.++..+.+.||||.||++
T Consensus         5 ~ne~lkk~l~t~eg~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~~~~R--~~L~~eLgi~~~~~~~~~PLL~~lv~~   81 (81)
T PF09398_consen    5 VNENLKKFLSTKEGRLINELIREYLEFNNLDYTLSVFQPESGQPEEPLDR--EFLARELGISEDENSKSVPLLYELVSR   81 (81)
T ss_dssp             --HHHHHHHTSHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT----H--HHHHHHCT----CCCCTS-HHHHHHHC
T ss_pred             cchHHHHHhcCchhHHHHHHHHHHHHHcCCccHHHHHhhccCCCCCcCCH--HHHHHHcCCCCCCCCCCCCchHHHHhC
Confidence            89999999999999999999999999999999999999999999987776  689999999998878899999999973



This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions Back     alignment and domain information
>smart00667 LisH Lissencephaly type-1-like homology motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
2d68_A82 FOP, FGFR1OP; alpha helical bundle, dimer, cell cy 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens} Length = 82 Back     alignment and structure
 Score = 56.5 bits (136), Expect = 6e-11
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 62  NDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGY 121
           N+  K+   +  GRL+ +L+ E+L +  L+ T+ V+ PE +  +     E    +   G 
Sbjct: 6   NESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRE--NLARDLGI 63

Query: 122 DLNKNGDSAPLLLDVLEGF 140
              +     PLLL+V+  +
Sbjct: 64  IEAEGTVGGPLLLEVIRRW 82


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
2d68_A82 FOP, FGFR1OP; alpha helical bundle, dimer, cell cy 99.87
2xtc_A90 F-box-like/WD repeat-containing protein TBL1X; tra 85.06
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens} Back     alignment and structure
Probab=99.87  E-value=3.3e-23  Score=160.17  Aligned_cols=77  Identities=25%  Similarity=0.442  Sum_probs=70.3

Q ss_pred             CcccccccCCCchhHHHHHHHHHHHHHcCCccccchhccccCCchHHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHH
Q 024581           61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEG  139 (265)
Q Consensus        61 ~N~~~k~i~~s~eg~LineLI~EYLef~gl~yTLSVF~pESgl~~~~l~rEl~~L~~~LGL~~n~~~~~~PLL~qLLe~  139 (265)
                      ||+++|+++++++|+|+++||+|||+|+||+||++||+||||+++.+..|  +.|+++||+..+..+.+.|||+.||++
T Consensus         5 ~N~~~k~~~~s~~GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~~~~R--~~La~eLgl~~~~~~~~~PLL~~ll~~   81 (82)
T 2d68_A            5 VNESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGR--ENLARDLGIIEAEGTVGGPLLLEVIRR   81 (82)
T ss_dssp             CCHHHHHHHTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC---CCH--HHHHHHTTCCCCTTTTTSCHHHHHHHH
T ss_pred             ccHHHHHHHcCcccHHHHHHHHHHHHHcCCcchHHhhhhccCCCCCCCCH--HHHHHHcCCCCCCCCCCCCcHHHHHhh
Confidence            99999999999999999999999999999999999999999999777776  579999999988888899999999986



>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00