Citrus Sinensis ID: 024672

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MIAQSRSSSNFLPCLPPKPKAKVTRIRALSADAGHDRPPSSSEGKNPLTAVMDVPRNIWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYLLAERVSSVIEEARPLLTK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccEEEccEEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEEcccccccEEEEccccccccccccccccccccccEEEEcccEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHcHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEcccccEEEEEEEEcccccccccccEEEEEEEEEEEEEEEcccccEEEEEEEccccEEccccEEEEEEcccccccEEEEEccccccccccccccccccccccEEEEcccEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
miaqsrsssnflpclppkpkakVTRIRALsadaghdrppsssegknpltavmdvprniwrrtlrplsdfgfgrrsvwEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSqacgictgtpvrirgvtvgnvirvnpslKSIEAVVEvedektvipqnalVEVNQSGLLMETliditprdpiptptvgpldpecvreglimcdrqkmkghqgvsLDELVGIVTRLGremegigitnSYLLAERVSSVIEEARPLLTK
Flexible Loop (DISEMBL)
miaqsrsssnflpclppkpkAKVTRIRALsadaghdrppsssegknpltavmdvprniwrrtlrplsdfgfGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQacgictgtpvrirgvtvgnvirvnpslKSIEAVVEvedektvipqnalvevnqsGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQkmkghqgvsldELVGIVTRLGREmegigitnsyllaervssvieearplltk
Low Complexity Region (SEG)
MIAQSRSSSNFLPCLPPKPKAKVTRIRALSADAGHDRPPSSSEGKNPLTAVMDVPRNIWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMEtliditprdpiptptVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYLLAERVSSVIEEARPLLTK
Disordered region (IsUnstruct)
*************************************************AVMDVPRNIWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYLLAERVSSVI*********
Disordered Region (DISOPRED)
**************L***************************************PRNIWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPI**********ECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREM***G*TN*YLLAER**SV*EEARPLL**
Disordered Region (DISEMBL)
*********NFLPCLPPKPKAKVTRIRALS**************KNPLTAVMDVPRNIWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYLLAERVSSVIE********
Disordered Region (DISPRO)
MIAQSRSSSNFLPCLPPKPKAKVTRIRAL****************NPLTAVMDVPRNIWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYLLAERVSSVIEEARPLLTK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIAQSRSSSNFLPCLPPKPKAKVTRIRALSADAGHDRPPSSSEGKNPLTAVMDVPRNIWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYLLAERVSSVIEEARPLLTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q9LTR2	381	Protein TRIGALACTOSYLDIAC	yes	no	0.992	0.687	0.727	1e-109
Q1XDB5	216	Uncharacterized protein y	N/A	no	0.609	0.745	0.327	3e-19
P51372	209	Uncharacterized protein y	N/A	no	0.496	0.626	0.345	3e-17
P46315	198	Uncharacterized protein y	N/A	no	0.526	0.702	0.292	5e-15
P45029	167	Putative ABC transporter-	yes	no	0.397	0.628	0.309	0.0002

>sp|Q9LTR2|TGD2_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis thaliana GN=TGD2 PE=1 SV=1

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/264 (72%), Positives = 223/264 (84%), Gaps = 2/264 (0%)

Query: 2   IAQSRSSSNFLPCLPPKPKAKVTRIRALS-ADAGHDRPPSSSEGKNPLTAVMDVPRNIWR 60
           IA  R S N +P LPPKP+ +   +RA S +DA H +P SS  GKNPLT V+DVPRNIWR
Sbjct: 20  IACPRVSPNGVPYLPPKPRTRHLVVRAASNSDAAHGQP-SSDGGKNPLTVVLDVPRNIWR 78

Query: 61  RTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQA 120
           +TL+PLSDFGFG+RS+WEGGVGLF+VSG  LLALS AWLRGFQ+RSKFRKY  VFE S A
Sbjct: 79  QTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWLRGFQMRSKFRKYQTVFELSHA 138

Query: 121 CGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETL 180
            GICTGTPVRIRGVTVG +IRVNPSLK+IEAV E+ED+K +IP+N+LVEVNQSGLLMET+
Sbjct: 139 SGICTGTPVRIRGVTVGTIIRVNPSLKNIEAVAEIEDDKIIIPRNSLVEVNQSGLLMETM 198

Query: 181 IDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIG 240
           IDI PR+PIP P+VGPL PEC +EGLI+CDRQ +KG QGVSLDELVGI TR+GRE+E IG
Sbjct: 199 IDIMPRNPIPEPSVGPLHPECGKEGLIVCDRQTIKGVQGVSLDELVGIFTRIGREVEAIG 258

Query: 241 ITNSYLLAERVSSVIEEARPLLTK 264
           + N+Y LAER +SVIEEARPLL K
Sbjct: 259 VANTYSLAERAASVIEEARPLLKK 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q1XDB5|YCF22_PORYE Uncharacterized protein ycf22 OS=Porphyra yezoensis GN=ycf22 PE=4 SV=1

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 74  RSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRG 133
           ++ ++  +G   +    LL++SL W        K   Y A  EF  A GI  GT VR+RG
Sbjct: 6   KNTYKEFLGACFLGSVTLLSISL-W-NIINQAGKNHSYKAFIEFDSAYGIQEGTAVRLRG 63

Query: 134 VTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPI---- 189
           + VG V+ ++ S  SI   +E++   T+IP+ +L+E NQ+GLL +T+IDI P   +    
Sbjct: 64  LPVGKVVGISQSSNSILTSIEIKSSSTIIPKTSLIETNQTGLLNDTVIDIIPLSKLSIDY 123

Query: 190 PTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREME 237
            +   GPL   C     I+C+   +KG +G++ D+L+   TR+ +  +
Sbjct: 124 SSIKAGPLSGAC-DNSQIICNLNYLKGERGLNYDDLIRATTRISQRFD 170

Porphyra yezoensis (taxid: 2788)

>sp|P51372|YCF22_PORPU Uncharacterized protein ycf22 OS=Porphyra purpurea GN=ycf22 PE=4 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 5/136 (3%)

Query: 106 SKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQN 165
           SK + Y    EF  A GI  GT VR+RG+ +G V+ ++ S  SI   +E++   T+IP+ 
Sbjct: 36  SKNKSYKVFVEFDSAYGIQEGTSVRLRGLPIGKVVGISQSSHSILTRIEIQSCNTIIPKT 95

Query: 166 ALVEVNQSGLLMETLIDITP----RDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVS 221
           +L+E NQ+GLL +T+IDI P         +   GPL   C     I+C    ++G +G++
Sbjct: 96  SLIETNQTGLLNDTIIDIVPFTTLNQEYHSLKEGPLSKTC-DSNQIICHLNYLQGERGLN 154

Query: 222 LDELVGIVTRLGREME 237
            D+L+   TR+ +  +
Sbjct: 155 YDDLIRATTRISQRFD 170

Porphyra purpurea (taxid: 2787)

>sp|P46315|YCF22_ANTSP Uncharacterized protein ycf22 OS=Antithamnion sp. GN=ycf22 PE=4 SV=1

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 81/147 (55%), Gaps = 8/147 (5%)

Query: 95  SLAWLRGFQLRSKFRKYLAVF-EFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVV 153
           S+ W   F ++ K +   ++F EF+ A GI  GT V +RGV +G +  +  +  S+   +
Sbjct: 8   SIIW---FIVKYKKKHGYSLFVEFTHAYGIGEGTSVNMRGVNIGYIKNLQINSNSVLVSI 64

Query: 154 EVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTV---GPLDPECVREGLIMCD 210
            ++ EK +IP+N+++E NQ+ L   T+IDI P + I   ++      +  C  +  I C+
Sbjct: 65  YIKSEKILIPKNSIIETNQTSLFNNTIIDIIPLEKINNYSIRDFNVFNQNC-YDLQIFCN 123

Query: 211 RQKMKGHQGVSLDELVGIVTRLGREME 237
            Q + G +G++ D+L+   TR+ +  +
Sbjct: 124 NQYIIGDRGLNYDDLIRATTRIAQRFD 150

Antithamnion sp (taxid: 2767)

>sp|P45029|Y1085_HAEIN Putative ABC transporter-binding protein HI_1085 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1085 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 77  WEGGVGLFLVSGT---VLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRG 133
           +E  VGLFL+ G    V L L +A ++GF   ++ + Y     F    G+    P++I G
Sbjct: 7   YEFWVGLFLLLGIGALVFLGLRVANVQGF---AETKSYTVTATFDNIGGLKVRAPLKIGG 63

Query: 134 VTVGNVIRVNPSLKSI--EAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDIT 184
           V +G V  +    KS   +  + +  E   IP+N+ + +  SGLL E  I +T
Sbjct: 64  VVIGRVSAITLDEKSYLPKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALT 116

Could be part of an ABC transporter complex.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
359478145	382	PREDICTED: protein TRIGALACTOSYLDIACYLGL	0.973	0.672	0.778	1e-118
147779029	408	hypothetical protein VITISV_036125 [Viti	0.973	0.629	0.778	1e-118
255587510	388	conserved hypothetical protein [Ricinus	0.977	0.664	0.756	1e-115
224133242	364	predicted protein [Populus trichocarpa]	1.0	0.725	0.754	1e-115
224093031	370	predicted protein [Populus trichocarpa]	0.973	0.694	0.775	1e-114
449454311	385	PREDICTED: protein TRIGALACTOSYLDIACYLGL	0.946	0.649	0.764	1e-111
449470706	325	PREDICTED: protein TRIGALACTOSYLDIACYLGL	0.946	0.769	0.764	1e-110
357493711	398	ABC-type transport system involved in re	0.996	0.660	0.720	1e-109
297834968	381	hypothetical protein ARALYDRAFT_898445 [	0.992	0.687	0.731	1e-108
21553847	363	unknown [Arabidopsis thaliana]	0.996	0.724	0.728	1e-108

>gi|359478145|ref|XP_002272428.2| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Vitis vinifera] gi|297743846|emb|CBI36729.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/257 (77%), Positives = 231/257 (89%)

Query: 8   SSNFLPCLPPKPKAKVTRIRALSADAGHDRPPSSSEGKNPLTAVMDVPRNIWRRTLRPLS 67
           S NF+PCLPP+ + K+  +RA SADAGH +PPS S+ KNPL  ++D PRN+W++TLRPLS
Sbjct: 27  SGNFMPCLPPRSRKKLLLVRANSADAGHSQPPSPSKTKNPLAVILDFPRNVWKQTLRPLS 86

Query: 68  DFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGT 127
           DFGFGRRS+WEGGVGLFLVSGTVLL LSLAWLRGFQLRSKFRKYLAVFEF+QACGIC GT
Sbjct: 87  DFGFGRRSIWEGGVGLFLVSGTVLLVLSLAWLRGFQLRSKFRKYLAVFEFTQACGICKGT 146

Query: 128 PVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRD 187
           PVRIRGVTVGNVI+VNPSLKSIEAVVEVED+K +IPQN+L+EVNQSGLLMETLIDITPRD
Sbjct: 147 PVRIRGVTVGNVIQVNPSLKSIEAVVEVEDDKIIIPQNSLIEVNQSGLLMETLIDITPRD 206

Query: 188 PIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYLL 247
           P+PTP+VGPLDP+C +EG+I+CDRQK++G+QGVSLD LVGI TRLGRE+E IGI   Y +
Sbjct: 207 PLPTPSVGPLDPDCTKEGVIVCDRQKIRGYQGVSLDALVGIFTRLGREVEEIGIAQGYSM 266

Query: 248 AERVSSVIEEARPLLTK 264
           AER  S+IEEARPLL K
Sbjct: 267 AERALSIIEEARPLLAK 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779029|emb|CAN71395.1| hypothetical protein VITISV_036125 [Vitis vinifera]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/257 (77%), Positives = 231/257 (89%)

Query: 8   SSNFLPCLPPKPKAKVTRIRALSADAGHDRPPSSSEGKNPLTAVMDVPRNIWRRTLRPLS 67
           S NF+PCLPP+ + K+  +RA SADAGH +PPS S+ KNPL  ++D PRN+W++TLRPLS
Sbjct: 27  SGNFMPCLPPRSRKKLLLVRANSADAGHSQPPSPSKTKNPLAVILDFPRNVWKQTLRPLS 86

Query: 68  DFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGT 127
           DFGFGRRS+WEGGVGLFLVSGTVLL LSLAWLRGFQLRSKFRKYLAVFEF+QACGIC GT
Sbjct: 87  DFGFGRRSIWEGGVGLFLVSGTVLLVLSLAWLRGFQLRSKFRKYLAVFEFTQACGICKGT 146

Query: 128 PVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRD 187
           PVRIRGVTVGNVI+VNPSLKSIEAVVEVED+K +IPQN+L+EVNQSGLLMETLIDITPRD
Sbjct: 147 PVRIRGVTVGNVIQVNPSLKSIEAVVEVEDDKIIIPQNSLIEVNQSGLLMETLIDITPRD 206

Query: 188 PIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYLL 247
           P+PTP+VGPLDP+C +EG+I+CDRQK++G+QGVSLD LVGI TRLGRE+E IGI   Y +
Sbjct: 207 PLPTPSVGPLDPDCTKEGVIVCDRQKIRGYQGVSLDALVGIFTRLGREVEEIGIAQGYSM 266

Query: 248 AERVSSVIEEARPLLTK 264
           AER  S+IEEARPLL K
Sbjct: 267 AERALSIIEEARPLLAK 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587510|ref|XP_002534297.1| conserved hypothetical protein [Ricinus communis] gi|223525556|gb|EEF28089.1| conserved hypothetical protein [Ricinus communis]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/267 (75%), Positives = 236/267 (88%), Gaps = 9/267 (3%)

Query: 7   SSSNFLPCLPPKPKAKVTRIRALSADAGHDRPPSS---------SEGKNPLTAVMDVPRN 57
           SSSNF+P LP +P+ ++ RIRA SADA H++  +S         +E KNPL  V++VP+N
Sbjct: 23  SSSNFMPYLPSRPQKQLARIRASSADAEHNQASASSSSSSSSSSNEKKNPLAVVLEVPQN 82

Query: 58  IWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEF 117
           +WR+TLRPLSDFGFGRRSVWEGGVGLFLVSG VLLALSLAWLRGFQLRSKFRKY AV EF
Sbjct: 83  LWRQTLRPLSDFGFGRRSVWEGGVGLFLVSGAVLLALSLAWLRGFQLRSKFRKYTAVLEF 142

Query: 118 SQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLM 177
           +QACGICTGTPVRIRGVTVGNVI+VNPSLKSIEAVVEVED+K +IP+N+L+EVNQSGLLM
Sbjct: 143 AQACGICTGTPVRIRGVTVGNVIQVNPSLKSIEAVVEVEDDKIIIPRNSLIEVNQSGLLM 202

Query: 178 ETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREME 237
           ETLIDITP+DPIP+P+VGPLD ECV+EGLI+CDRQK+KG QGVS+D LVGI TRLGREME
Sbjct: 203 ETLIDITPKDPIPSPSVGPLDAECVKEGLIVCDRQKIKGQQGVSVDALVGIFTRLGREME 262

Query: 238 GIGITNSYLLAERVSSVIEEARPLLTK 264
            IG++ +Y LAERV++VIEEA+PLLTK
Sbjct: 263 EIGVSKTYKLAERVAAVIEEAKPLLTK 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133242|ref|XP_002327995.1| predicted protein [Populus trichocarpa] gi|222837404|gb|EEE75783.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/265 (75%), Positives = 231/265 (87%), Gaps = 1/265 (0%)

Query: 1   MIAQSRSSSNFLPCLPPKPKAKVTRIRALSADAGH-DRPPSSSEGKNPLTAVMDVPRNIW 59
           MI  S  SSNFLP L  +P+ K+  +RA+SAD GH  +PPSSSE  N L  +++VPRNIW
Sbjct: 1   MINVSHGSSNFLPFLLARPQKKLIGVRAMSADTGHSQQPPSSSEKMNALAVILEVPRNIW 60

Query: 60  RRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQ 119
           R+TL+PLSDFGFGRRS+WEGGVGLFLVSG VL+ALSLAWLRGF LRS+FRKY AV EF+Q
Sbjct: 61  RQTLKPLSDFGFGRRSIWEGGVGLFLVSGAVLVALSLAWLRGFLLRSQFRKYTAVLEFAQ 120

Query: 120 ACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMET 179
           A GICTGT VRIRGVTVG V+RVNPSLKSIEAVVEVED+K  IP+N+L+EVNQSGLLMET
Sbjct: 121 ASGICTGTQVRIRGVTVGEVVRVNPSLKSIEAVVEVEDDKNFIPKNSLIEVNQSGLLMET 180

Query: 180 LIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGI 239
           +IDITPRDPIPTP+VGPLD ECV+EGLI+CDRQK+KGHQGVSLD LVGI TR+GRE+E I
Sbjct: 181 MIDITPRDPIPTPSVGPLDAECVKEGLIVCDRQKLKGHQGVSLDALVGIFTRIGREVEEI 240

Query: 240 GITNSYLLAERVSSVIEEARPLLTK 264
           G+  SY LAERV++VIEEA+PLLTK
Sbjct: 241 GVAKSYSLAERVAAVIEEAKPLLTK 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093031|ref|XP_002309784.1| predicted protein [Populus trichocarpa] gi|222852687|gb|EEE90234.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/258 (77%), Positives = 229/258 (88%), Gaps = 1/258 (0%)

Query: 8   SSNFLPCLPPKPKAKVTRIRALSADAGHDRPP-SSSEGKNPLTAVMDVPRNIWRRTLRPL 66
           SSNFLPCL  +P+ K+  +RA+SAD GH +PP SSSE  NPL  V++VP NIWR+TL+PL
Sbjct: 14  SSNFLPCLRARPQKKLLGVRAMSADTGHSQPPPSSSEKMNPLAVVLEVPVNIWRQTLKPL 73

Query: 67  SDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTG 126
            DFGFGRRS+WEGGVGLFLVSG VL+ALSLAWLRGFQLRSKFRKYLAV EF+QA GICTG
Sbjct: 74  GDFGFGRRSIWEGGVGLFLVSGAVLVALSLAWLRGFQLRSKFRKYLAVIEFAQASGICTG 133

Query: 127 TPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPR 186
           T VRIRGVTVG V+RVNPSLKSIEAVVEVED+K  IP+N+LVEVNQSGLLMET+IDITPR
Sbjct: 134 THVRIRGVTVGEVVRVNPSLKSIEAVVEVEDDKIFIPRNSLVEVNQSGLLMETMIDITPR 193

Query: 187 DPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYL 246
           DPIP P+VGPLD ECV+EGLI+CDRQ++KG QGVSLD LVGI TR+GRE+E IG+ NSY 
Sbjct: 194 DPIPKPSVGPLDAECVKEGLIVCDRQRIKGIQGVSLDALVGIFTRIGREVEEIGVANSYA 253

Query: 247 LAERVSSVIEEARPLLTK 264
           LAERV++VIEEA+PLLTK
Sbjct: 254 LAERVAAVIEEAKPLLTK 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454311|ref|XP_004144899.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucumis sativus] gi|449500149|ref|XP_004161018.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucumis sativus]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/250 (76%), Positives = 224/250 (89%)

Query: 15  LPPKPKAKVTRIRALSADAGHDRPPSSSEGKNPLTAVMDVPRNIWRRTLRPLSDFGFGRR 74
           LP   K+KV +I+A SADAGH +PPSSSE +NPL+  +DVPR +WR+TLRPLS+FGFG+R
Sbjct: 37  LPLGLKSKVKQIKATSADAGHSQPPSSSERRNPLSLFLDVPRTVWRQTLRPLSNFGFGQR 96

Query: 75  SVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGV 134
           S+WEGGVGLFLVSG +LL LSLAWLRGFQLRSKFRKYLAVFEF+QA GI  GTPVRIRGV
Sbjct: 97  SIWEGGVGLFLVSGAILLTLSLAWLRGFQLRSKFRKYLAVFEFAQASGISVGTPVRIRGV 156

Query: 135 TVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTV 194
           TVGNVIRVNPSL+ IE VVEVED+K +IP+N+LVEVNQSGLLMET+IDITPRDPIP P+ 
Sbjct: 157 TVGNVIRVNPSLRCIETVVEVEDDKIIIPRNSLVEVNQSGLLMETMIDITPRDPIPVPSA 216

Query: 195 GPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYLLAERVSSV 254
           GPLDPEC++EGLI+CD+QK+KG+QGVSLD LVGI TRLGRE E IG+TN++LLA+RV+ V
Sbjct: 217 GPLDPECIQEGLILCDKQKIKGYQGVSLDALVGIFTRLGREAEEIGLTNTFLLAQRVALV 276

Query: 255 IEEARPLLTK 264
           IEEA+PLL K
Sbjct: 277 IEEAKPLLLK 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470706|ref|XP_004153057.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucumis sativus]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/250 (76%), Positives = 224/250 (89%)

Query: 15  LPPKPKAKVTRIRALSADAGHDRPPSSSEGKNPLTAVMDVPRNIWRRTLRPLSDFGFGRR 74
           LP   K+KV +I+A SADAGH +PPSSSE +NPL+  +DVPR +WR+TLRPLS+FGFG+R
Sbjct: 37  LPLGLKSKVKQIKATSADAGHSQPPSSSERRNPLSLFLDVPRTVWRQTLRPLSNFGFGQR 96

Query: 75  SVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGV 134
           S+WEGGVGLFLVSG +LL LSLAWLRGFQLRSKFRKYLAVFEF+QA GI  GTPVRIRGV
Sbjct: 97  SIWEGGVGLFLVSGAILLTLSLAWLRGFQLRSKFRKYLAVFEFAQASGISVGTPVRIRGV 156

Query: 135 TVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTV 194
           TVGNVIRVNPSL+ IE VVEVED+K +IP+N+LVEVNQSGLLMET+IDITPRDPIP P+ 
Sbjct: 157 TVGNVIRVNPSLRCIETVVEVEDDKIIIPRNSLVEVNQSGLLMETMIDITPRDPIPVPSA 216

Query: 195 GPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITNSYLLAERVSSV 254
           GPLDPEC++EGLI+CD+QK+KG+QGVSLD LVGI TRLGRE E IG+TN++LLA+RV+ V
Sbjct: 217 GPLDPECIQEGLILCDKQKIKGYQGVSLDALVGIFTRLGREAEEIGLTNTFLLAQRVALV 276

Query: 255 IEEARPLLTK 264
           IEEA+PLL K
Sbjct: 277 IEEAKPLLLK 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493711|ref|XP_003617144.1| ABC-type transport system involved in resistance to organic solvents periplasmic component [Medicago truncatula] gi|355518479|gb|AET00103.1| ABC-type transport system involved in resistance to organic solvents periplasmic component [Medicago truncatula]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/265 (72%), Positives = 227/265 (85%), Gaps = 2/265 (0%)

Query: 1   MIAQSRSSSNFLPCLPPKPKAKVTRIRALSADAGH-DRPPSSSEGKNPLTAVMDVPRNIW 59
           +I+   +S  F P L  + + K+ +IRA+S+D G+  +  SSSE KNPL+ V D+PR IW
Sbjct: 20  LISLPGNSLKFAP-LSIRNRNKINKIRAISSDTGNVKKQSSSSETKNPLSVVFDIPRRIW 78

Query: 60  RRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQ 119
           ++TL PLSDFGFGR SVWEGGVGLFLVSGT+L  LS+AWLR FQ+ SKFRKY AVFEF+Q
Sbjct: 79  KQTLVPLSDFGFGRNSVWEGGVGLFLVSGTILFVLSMAWLRAFQINSKFRKYTAVFEFAQ 138

Query: 120 ACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMET 179
           ACGI TGTPVRIRGVTVGNVIRVNPSLKSIEAVVE+ED+KT+IP+N+ VEVNQSGLLMET
Sbjct: 139 ACGISTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEIEDDKTIIPKNSFVEVNQSGLLMET 198

Query: 180 LIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGI 239
            IDI PRDPIPTP+VGPLD +C +EGLI+CDR+K+KGHQGVSLDE+VGI TRLGR++EGI
Sbjct: 199 KIDINPRDPIPTPSVGPLDEKCAKEGLIVCDREKIKGHQGVSLDEMVGIYTRLGRDVEGI 258

Query: 240 GITNSYLLAERVSSVIEEARPLLTK 264
           GI NSY LAERV +V+EEARPLLT+
Sbjct: 259 GIVNSYSLAERVFAVMEEARPLLTQ 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834968|ref|XP_002885366.1| hypothetical protein ARALYDRAFT_898445 [Arabidopsis lyrata subsp. lyrata] gi|297331206|gb|EFH61625.1| hypothetical protein ARALYDRAFT_898445 [Arabidopsis lyrata subsp. lyrata]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 224/264 (84%), Gaps = 2/264 (0%)

Query: 2   IAQSRSSSNFLPCLPPKPKAKVTRIRALS-ADAGHDRPPSSSEGKNPLTAVMDVPRNIWR 60
           IA  R S N +P LPPKP+ +   +RA S +DA H +P SS EGKNPLT V+DVPRNIWR
Sbjct: 20  IACPRVSPNGVPYLPPKPRTRHLLVRAASNSDAAHGQP-SSDEGKNPLTVVLDVPRNIWR 78

Query: 61  RTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQA 120
           +TL+PLSDFGFG+RSVWEGGVGLF+VSG  LLALS AWLRGFQ+RSKFRKY  VFE S A
Sbjct: 79  QTLKPLSDFGFGKRSVWEGGVGLFIVSGATLLALSWAWLRGFQMRSKFRKYQTVFELSHA 138

Query: 121 CGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETL 180
            GICTGTPVRIRGVTVG +IRVNPSLK+IEAV E+ED+K +IP+N+LVEVNQSGLLMET+
Sbjct: 139 SGICTGTPVRIRGVTVGTIIRVNPSLKNIEAVAEIEDDKIIIPKNSLVEVNQSGLLMETM 198

Query: 181 IDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIG 240
           IDI PR+PIP P+VGPL PEC +EGLI+CDRQ ++G QGVSLDELVGI TR+GRE+E IG
Sbjct: 199 IDIMPRNPIPEPSVGPLHPECGKEGLIVCDRQTIEGVQGVSLDELVGIFTRIGREVEAIG 258

Query: 241 ITNSYLLAERVSSVIEEARPLLTK 264
           + N+Y LAER +SVIEEARPLL K
Sbjct: 259 VANTYSLAERAASVIEEARPLLKK 282

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553847|gb|AAM62940.1| unknown [Arabidopsis thaliana]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 224/265 (84%), Gaps = 2/265 (0%)

Query: 1   MIAQSRSSSNFLPCLPPKPKAKVTRIRALS-ADAGHDRPPSSSEGKNPLTAVMDVPRNIW 59
           MIA  R S N +P LPPKP+ +   +RA S +DA H +P SS  GKNPLT V+DVPRNIW
Sbjct: 1   MIACPRVSPNGVPYLPPKPRTRHLVVRAASNSDAAHGQP-SSDGGKNPLTVVLDVPRNIW 59

Query: 60  RRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQ 119
           R+TL+PLSDFGFG+RS+WEGGVGLF+VSG  LLALS AWLRGFQ+RSKFRKY  VFE S 
Sbjct: 60  RQTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWLRGFQMRSKFRKYQTVFELSH 119

Query: 120 ACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMET 179
           A GICTGTPVRIRGVTVG +IRVNPSLK+IEAV E+ED+K +IP+N+LVEVNQSGLLMET
Sbjct: 120 ASGICTGTPVRIRGVTVGTIIRVNPSLKNIEAVAEIEDDKIIIPRNSLVEVNQSGLLMET 179

Query: 180 LIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGI 239
           +IDI PR+PIP P+VGPL PEC +EGLI+CDRQ +KG QGVSLDELVGI TR+GRE+E I
Sbjct: 180 MIDIMPRNPIPEPSVGPLHPECGKEGLIVCDRQTIKGVQGVSLDELVGIFTRIGREVEAI 239

Query: 240 GITNSYLLAERVSSVIEEARPLLTK 264
           G+ N+Y LAER +SVIEEARPLL K
Sbjct: 240 GVANTYSLAERAASVIEEARPLLKK 264

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2092354	381	ABCI15 "ATP-binding cassette I	0.996	0.690	0.690	1.1e-92
UNIPROTKB|Q87WU8	155	PSPTO_4445 "Mce-related protei	0.382	0.651	0.291	0.00032
UNIPROTKB|Q48EC3	155	PSPPH_4143 "Toluene tolerance	0.382	0.651	0.281	0.00044

TAIR|locus:2092354 ABCI15 "ATP-binding cassette I15" [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 183/265 (69%), Positives = 211/265 (79%)

Query:     1 MIAQSRSSSNFLPCLPPKPKAKVTRIRALS-ADAGHDRPPSSSEGKNPLTAVMDVPRNIW 59
             MIA  R S N +P LPPKP+ +   +RA S +DA H +P SS  GKNPLT V+DVPRNIW
Sbjct:    19 MIACPRVSPNGVPYLPPKPRTRHLVVRAASNSDAAHGQP-SSDGGKNPLTVVLDVPRNIW 77

Query:    60 RRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQ 119
             R+TL+PLSDFGFG+RS+WEGGVGLF+VSG  LLALS AWLRGFQ+RSKFRKY  VFE S 
Sbjct:    78 RQTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWLRGFQMRSKFRKYQTVFELSH 137

Query:   120 ACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMEX 179
             A GICTGTPVRIRGVTVG +IRVNPSLK+IEAV E+ED+K +IP+N+LVEVNQSGLLME 
Sbjct:   138 ASGICTGTPVRIRGVTVGTIIRVNPSLKNIEAVAEIEDDKIIIPRNSLVEVNQSGLLMET 197

Query:   180 XXXXXXXXXXXXXXVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGI 239
                           VGPL PEC +EGLI+CDRQ +KG QGVSLDELVGI TR+GRE+E I
Sbjct:   198 MIDIMPRNPIPEPSVGPLHPECGKEGLIVCDRQTIKGVQGVSLDELVGIFTRIGREVEAI 257

Query:   240 GITNSYLLAERVSSVIEEARPLLTK 264
             G+ N+Y LAER +SVIEEARPLL K
Sbjct:   258 GVANTYSLAERAASVIEEARPLLKK 282

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005319 "lipid transporter activity" evidence=IMP

GO:0005543 "phospholipid binding" evidence=IDA

GO:0006869 "lipid transport" evidence=IMP

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0032365 "intracellular lipid transport" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q87WU8 PSPTO_4445 "Mce-related protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 104 (41.7 bits), Expect = 0.00032, P = 0.00032
 Identities = 30/103 (29%), Positives = 47/103 (45%)

Query:    78 EGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVG 137
             E GVGLFL++G + L L    + G    +    Y     F    G+     V + GVTVG
Sbjct:     7 ETGVGLFLLAGILALLLLALRVSGLSTSASTDTYKLYAYFDNIAGLTVRAKVSMAGVTVG 66

Query:   138 NVIRVNPSLKSIEAVVEVEDEKTV--IPQNALVEVNQSGLLME 178
              V  ++    +    V +E +K V  +P ++   +  +GLL E
Sbjct:    67 KVTAIDLDRDTFTGRVTLEIQKKVDNLPSDSTASILTAGLLGE 109

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48EC3 PSPPH_4143 "Toluene tolerance protein Ttg2C, putative" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 103 (41.3 bits), Expect = 0.00044, P = 0.00044
 Identities = 29/103 (28%), Positives = 47/103 (45%)

Query:    78 EGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVG 137
             E GVGLFL++G + L L    + G    +    Y     F    G+     V + GVT+G
Sbjct:     7 ETGVGLFLLAGILALLLLALRVSGLSTSASTDTYKLYAYFDNIAGLTVRAKVSMAGVTIG 66

Query:   138 NVIRVNPSLKSIEAVVEVEDEKTV--IPQNALVEVNQSGLLME 178
              V  ++    +    V +E +K V  +P ++   +  +GLL E
Sbjct:    67 KVTAIDLDRDTFTGRVTLEIQKKVDNLPSDSTASILTAGLLGE 109


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      264       249   0.00080  114 3  11 22  0.43    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  173 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.33u 0.11s 19.44t   Elapsed:  00:00:01
  Total cpu time:  19.33u 0.11s 19.44t   Elapsed:  00:00:01
  Start:  Mon May 20 17:03:16 2013   End:  Mon May 20 17:03:17 2013

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009636 "response to toxic substance" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LTR2	TGD2_ARATH	No assigned EC number	0.7272	0.9924	0.6876	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_scaffold_64000134	hypothetical protein (364 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	PtrTGD1	ABC transporter family protein (258 aa)			•				•		0.471

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
PLN03094	370	PLN03094, PLN03094, Substrate binding subunit of E	1e-158
pfam02470	80	pfam02470, MCE, mce related protein	2e-16
COG1463	359	COG1463, Ttg2C, ABC-type transport system involved	2e-14
TIGR00996	291	TIGR00996, Mtu_fam_mce, virulence factor Mce famil	7e-09

>gnl|CDD|178642 PLN03094, PLN03094, Substrate binding subunit of ER-derived-lipid transporter; Provisional

 Score =  443 bits (1140), Expect = e-158
 Identities = 192/265 (72%), Positives = 222/265 (83%), Gaps = 1/265 (0%)

Query: 1   MIAQSRSSSNFLPCLPPKPKAKVTRIRALSADAGHDR-PPSSSEGKNPLTAVMDVPRNIW 59
           MI+   SSSN LP LPPKP+ ++  +RA+S        PPSS   KNPL  V++VPRNIW
Sbjct: 7   MISSLPSSSNGLPFLPPKPQTRLLLVRAMSNATAAAASPPSSEGSKNPLAVVLEVPRNIW 66

Query: 60  RRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQ 119
           R+TL+PLSDFGFG+RSVWEGGVGLFL+SG  LLAL+LAWLRGFQLRSKFRKY AVFEF Q
Sbjct: 67  RQTLKPLSDFGFGKRSVWEGGVGLFLLSGAALLALTLAWLRGFQLRSKFRKYQAVFEFPQ 126

Query: 120 ACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMET 179
           ACGIC GTPVRIRGVTVGNV+RV PSL+ I+ VVEVED+K VIP+N+LVEVNQSGL+MET
Sbjct: 127 ACGICVGTPVRIRGVTVGNVVRVRPSLEKIDVVVEVEDDKIVIPRNSLVEVNQSGLIMET 186

Query: 180 LIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGI 239
           LIDITPRDPIP P+VGPLDPEC +EGLI+CDR+++KG QGVSLDELVGI TRL REME I
Sbjct: 187 LIDITPRDPIPKPSVGPLDPECEKEGLIVCDRERIKGEQGVSLDELVGICTRLAREMEAI 246

Query: 240 GITNSYLLAERVSSVIEEARPLLTK 264
           G+   Y LAER + ++EEARPLL K
Sbjct: 247 GVAKMYALAERAADLMEEARPLLLK 271

Length = 370

>gnl|CDD|217055 pfam02470, MCE, mce related protein

 Score = 71.9 bits (177), Expect = 2e-16
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 109 RKYLAVFEFSQACGICTGTPVRIRGVTVGNV--IRVNPSLKSIEAVVEVEDEKTVIPQNA 166
           R Y     F  A G+  G PVR RGV VG V  I ++P    +   + ++ +  VIP+++
Sbjct: 1   RGYTVTAYFDDAGGLEVGAPVRYRGVPVGRVTSIDLDPDGGGVRVTLRIDPDVVVIPKDS 60

Query: 167 LVEVNQSGLLMETLIDITPR 186
              +   GLL E  I + P 
Sbjct: 61  RAGIRSLGLLGEKYIALDPG 80

This family of proteins contains the mce (mammalian cell entry) proteins from Mycobacterium tuberculosis. The archetype (Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage. This family contains proteins of unknown function from other bacteria. Length = 80

>gnl|CDD|224380 COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 73  RRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIR 132
              V  G   L  +   +L  L LA L            +    F  A G+  G+PVR R
Sbjct: 5   ANRVLVGLFLLLGLLAVLLFVLWLATL-PGLPGGTGTYTVTA-YFDDAGGLYVGSPVRYR 62

Query: 133 GVTVGNVIRVNPSLKSIEAVVEVE-DEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPT 191
           GV VG V  ++   K   A V +E D    IP ++   +  +GLL E  I++TP D    
Sbjct: 63  GVKVGKVASISLDPKPNGARVTLEIDSDYPIPADSTASIRTTGLLGEKYIELTPGDAGGP 122

Query: 192 PTV-GPLDP 199
               G   P
Sbjct: 123 KLRLGATIP 131

Length = 359

>gnl|CDD|233227 TIGR00996, Mtu_fam_mce, virulence factor Mce family protein

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 81  VGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVI 140
               +++  V+L +    L             A   F+ A G+  G+ VR+RGV VG V 
Sbjct: 5   FAAVVLAAVVVLGVVFLRLPFRGFGPGTYTVYA--YFTDAGGLYPGSKVRVRGVPVGKVT 62

Query: 141 RVNPSLKSIEAVVEVE-DEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDP 199
            +  SL    A V    D    IP NA   +  + LL    +++TP      P   PL P
Sbjct: 63  AI--SLPGNGARVTFSLDRGVTIPANATAAIRSTTLLGSRYVELTPP---KGPGGPPLPP 117

Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells [Cellular processes, Pathogenesis]. Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
PLN03094	370	Substrate binding subunit of ER-derived-lipid tran	100.0
TIGR00996	291	Mtu_fam_mce virulence factor Mce family protein. M	99.92
COG1463	359	Ttg2C ABC-type transport system involved in resist	99.9
PF02470	81	MCE: mce related protein; InterPro: IPR003399 This	99.77
PRK10807	547	paraquat-inducible protein B; Provisional	99.17
PRK10807	547	paraquat-inducible protein B; Provisional	98.91
COG3008	553	PqiB Paraquat-inducible protein B [General functio	98.82
COG3008	553	PqiB Paraquat-inducible protein B [General functio	96.41
PRK13254	148	cytochrome c-type biogenesis protein CcmE; Reviewe	84.3
PRK13159	155	cytochrome c-type biogenesis protein CcmE; Reviewe	82.14
PRK13165	160	cytochrome c-type biogenesis protein CcmE; Reviewe	82.07

>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional

Probab=100.00  E-value=4.6e-57  Score=425.90  Aligned_cols=262  Identities=73%  Similarity=1.217  Sum_probs=246.7

Q ss_pred             CCcCCCCCCCCCCCCCCCchhhhhhhhhcccCCCCCCCCCCC-CCCCccccccccchhhhhhccccCccccccccchhhH
Q 024672            1 MIAQSRSSSNFLPCLPPKPKAKVTRIRALSADAGHDRPPSSS-EGKNPLTAVMDVPRNIWRRTLRPLSDFGFGRRSVWEG   79 (264)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~m~rrs~~e~   79 (264)
                      ++.+++.+.+++||+|+|+++|...+|+.++++++++.+++. ++|||+++++++||++|||++|||+||||+||++||+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rrsvrEg   86 (370)
T PLN03094          7 MISSLPSSSNGLPFLPPKPQTRLLLVRAMSNATAAAASPPSSEGSKNPLAVVLEVPRNIWRQTLKPLSDFGFGKRSVWEG   86 (370)
T ss_pred             ccccCCCCCCCCCCCCCchHHHHHHHHHhcccccCCCCCcccccCCCcchhhhhhhHHHHHHhhcchhhcCCcchhHHHH
Confidence            467889999999999999999999999999999998885554 7899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccCCCceEEEEEEeccCCCCCCCCceEECCeEEEEEEEEeeCCCeEEEEEEEecCc
Q 024672           80 GVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEK  159 (264)
Q Consensus        80 ~VGlfvl~~lv~l~~~~~~l~g~~~~~~~~~y~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~~~~v~v~v~i~~~~  159 (264)
                      +||+|++++++++++++.|+.++.++..+.+|+++++|++++||++|++|+|+||+||+|++|++++++++|+++|++++
T Consensus        87 ~VGlfvL~gi~ll~~~~~~L~g~~~~~~~~~Y~~~a~F~~a~GL~~Gs~Vr~~GV~VG~V~~I~l~~~~V~V~~~I~~~~  166 (370)
T PLN03094         87 GVGLFLLSGAALLALTLAWLRGFQLRSKFRKYQAVFEFPQACGICVGTPVRIRGVTVGNVVRVRPSLEKIDVVVEVEDDK  166 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEecCCCCCCCCCCceEEcCEEeeEEEEEEecCCeEEEEEEEecCc
Confidence            99999999999999999999998876666899999999999999999999999999999999999999999999997567


Q ss_pred             cccCCCcEEEEEeCCcccceEEEEecCCCCCCCCCCCCCccccccCceecCCCeecccCCCCHHHHHHHHHHHHhhcCCC
Q 024672          160 TVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGI  239 (264)
Q Consensus       160 ~~Ip~ds~a~I~~~~llG~~~I~L~pg~p~~~~~~~p~~~~~~~~g~~L~dg~~I~~~~~~sld~Ll~~l~~l~~~l~~~  239 (264)
                      ++||+|+.|.|.+.||+|++||+|+|+.+.|....+|++++|..++.++|+|++|++++++++++|+++++++.++++++
T Consensus       167 ~~Ip~ds~A~I~~~gLLG~~~I~I~P~~~~p~~~~gpl~~dc~~~~~Ilcdg~~I~g~~~vsld~L~~~ltrL~~~~~~~  246 (370)
T PLN03094        167 IVIPRNSLVEVNQSGLIMETLIDITPRDPIPKPSVGPLDPECEKEGLIVCDRERIKGEQGVSLDELVGICTRLAREMEAI  246 (370)
T ss_pred             eecCCCCEEEEeeCCcccceeEEEecCCCCCcccCCCCCccCCccceeecCCCeeccCCCCCHHHHHHHHHHHHHHhhhc
Confidence            89999999999999999999999999998888899999999977778999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHhcccc
Q 024672          240 GITNSYLLAERVSSVIEEARPLL  262 (264)
Q Consensus       240 ~l~~l~~~~e~~~~~l~ea~p~l  262 (264)
                      +++++.+.++.+++.++++++++
T Consensus       247 ~v~~l~~~~~~~a~~~~~~~~ll  269 (370)
T PLN03094        247 GVAKMYALAERAADLMEEARPLL  269 (370)
T ss_pred             chhHHHHHHHHHHHHHhhcHHHH
Confidence            99999999999999999888764

>TIGR00996 Mtu_fam_mce virulence factor Mce family protein

Probab=99.92  E-value=1.6e-24  Score=198.14  Aligned_cols=144  Identities=22%  Similarity=0.289  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccCCCceEEEEEEeccCCCCCCCCceEECCeEEEEEEEEeeCCCeEEEEEEEecCc
Q 024672           80 GVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEK  159 (264)
Q Consensus        80 ~VGlfvl~~lv~l~~~~~~l~g~~~~~~~~~y~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~~~~v~v~v~i~~~~  159 (264)
                      .++++++++++++++.+.|+.+.. ++ ..+|+++++|+++.||.+|++|+|+||+||+|++|++++++++|+++++ ++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~f~~~~GL~~g~~V~~~Gv~VG~V~~i~~~~~~v~v~~~i~-~~   80 (291)
T TIGR00996         4 VFAAVVLAAVVVLGVVFLRLPFRG-FG-PGTYTVYAYFTDAGGLYPGSKVRVRGVPVGKVTAISLPGNGARVTFSLD-RG   80 (291)
T ss_pred             hhHHHHHHHHHHHhheeecccccc-CC-CCCeEEEEEECCCcCCCCCCceEEcceEEEEEEEEEecCCEEEEEEEec-CC
Confidence            345555555555555555666544 33 2578999999999999999999999999999999999999999999995 77


Q ss_pred             cccCCCcEEEEEeCCcccceEEEEecCCCCCCCCCCCCCccccccCceecCCCeecc---cCCCCHHHHHHHHHHHHhhc
Q 024672          160 TVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKG---HQGVSLDELVGIVTRLGREM  236 (264)
Q Consensus       160 ~~Ip~ds~a~I~~~~llG~~~I~L~pg~p~~~~~~~p~~~~~~~~g~~L~dg~~I~~---~~~~sld~Ll~~l~~l~~~l  236 (264)
                      ++||+|++|.|.+.+++|++||+|.|+..              +.++.|++|++|+.   ..+.+++++++++.++++++
T Consensus        81 ~~i~~~~~a~i~~~~l~G~~~i~l~~~~~--------------~~~~~L~~g~~ip~~~t~~~~~l~~ll~~~~~ll~~~  146 (291)
T TIGR00996        81 VTIPANATAAIRSTTLLGSRYVELTPPKG--------------PGGPPLPPGGVIPLARTSVPPEIDDLLGSLTRLLNGL  146 (291)
T ss_pred             cccCCCCEEEEeeccccceeEEEeeCCCC--------------CCCCcCCCcCEeChhhCCCCccHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999852              12467999999994   46889999999999999988


Q ss_pred             CCCc
Q 024672          237 EGIG  240 (264)
Q Consensus       237 ~~~~  240 (264)
                      ++..
T Consensus       147 ~~~~  150 (291)
T TIGR00996       147 DPEK  150 (291)
T ss_pred             CHHH
Confidence            7643

Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.

>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=1.8e-22  Score=190.98  Aligned_cols=148  Identities=27%  Similarity=0.409  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCceEEEEEEeccCCCCCCCCceEECCeEEEEEEEEeeC--CCeEEEEE
Q 024672           77 WEGGVGLFLVSGTVLLALSLAWLRGFQLR-SKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPS--LKSIEAVV  153 (264)
Q Consensus        77 ~e~~VGlfvl~~lv~l~~~~~~l~g~~~~-~~~~~y~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~--~~~v~v~v  153 (264)
                      .+.++|+|+++++++++++.+|+...... ....+|+++++|++++||.+|++|+|+||+||+|++|.++  +..++|++
T Consensus         6 ~~~~v~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~a~f~~~~GL~~gs~V~~~GV~VG~V~~I~~~~~~~~~~v~~   85 (359)
T COG1463           6 NRVLVGLFLLLGLLAVLLFVLWLATLPGLPGGTGTYTVTAYFDDAGGLYVGSPVRYRGVKVGKVASISLDPKPNGARVTL   85 (359)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccCCCceEEEEEecccccCCCCCceEEcCEEeEEEEEEEecCCCCceEEEE
Confidence            55899999999998887777777755432 1347899999999999999999999999999999999996  56788888


Q ss_pred             EEecCccccCCCcEEEEEeCCcccceEEEEecCCCCCCCCCCCCCccccccCceecCCCeec---ccCCCCHHHHHHHHH
Q 024672          154 EVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMK---GHQGVSLDELVGIVT  230 (264)
Q Consensus       154 ~i~~~~~~Ip~ds~a~I~~~~llG~~~I~L~pg~p~~~~~~~p~~~~~~~~g~~L~dg~~I~---~~~~~sld~Ll~~l~  230 (264)
                      +| +.+++||+|++|.|.+.|++|++||+|.|+.+               .+..+.+++.++   ++.+.++++++..+.
T Consensus        86 ~i-d~~~~Ip~~s~A~I~~~gL~G~~yIeL~~~~~---------------~~~~l~~~~~~~~~~t~~~~~~~~l~~~~~  149 (359)
T COG1463          86 EI-DSDYPIPADSTASIRTTGLLGEKYIELTPGDA---------------GGPKLRLGATIPLERTQVPIDLEDLLGDLL  149 (359)
T ss_pred             Ee-cCCcccCCCceeeeeeccccceeEEEeccCCC---------------CCCccCCCCCccccCCcCcccHHHHHHHHH
Confidence            88 47889999999999999999999999999842               112344444444   246788999998888


Q ss_pred             HHHhhcCCCc
Q 024672          231 RLGREMEGIG  240 (264)
Q Consensus       231 ~l~~~l~~~~  240 (264)
                      .+..+.+...
T Consensus       150 ~~~~~~~~~~  159 (359)
T COG1463         150 LLLGGLDPDR  159 (359)
T ss_pred             HHhccCCchh
Confidence            8888777653

>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]

Probab=99.77  E-value=5e-18  Score=127.86  Aligned_cols=76  Identities=30%  Similarity=0.564  Sum_probs=69.7

Q ss_pred             eEEEEEEeccCCCCCCCCceEECCeEEEEEEEEee--CCCeEEEEEEEecCcc--ccCCCcEEEEEeCCcccceEEEEec
Q 024672          110 KYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNP--SLKSIEAVVEVEDEKT--VIPQNALVEVNQSGLLMETLIDITP  185 (264)
Q Consensus       110 ~y~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l--~~~~v~v~v~i~~~~~--~Ip~ds~a~I~~~~llG~~~I~L~p  185 (264)
                      +|+++++|+++.||.+|++|+|+|++||+|++|++  +.+++.++++++ +++  .||+|+++.|.+.+++|++||+|.|
T Consensus         2 ~~~v~~~~~~~~GL~~gs~V~~~Gv~VG~V~~i~l~~~~~~v~v~~~i~-~~~~~~i~~~s~a~i~~~~llG~~~i~l~p   80 (81)
T PF02470_consen    2 GYTVTVYFDDAGGLSVGSPVRYRGVEVGKVTSIELDPDGNRVRVTLRID-PDYWHRIPDDSRASIRSSGLLGEKYIELIP   80 (81)
T ss_pred             CEEEEEEECCcCCCCCcCEEEECCEEEEEEEEEEEcCCCCEEEEEEEEc-CCcceecCCCcEEEEEeCCchhheEEEEeC
Confidence            68899999999999999999999999999999965  456788888884 777  9999999999999999999999999


Q ss_pred             C
Q 024672          186 R  186 (264)
Q Consensus       186 g  186 (264)
                      |
T Consensus        81 G   81 (81)
T PF02470_consen   81 G   81 (81)
T ss_pred             C
Confidence            7

The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.

>PRK10807 paraquat-inducible protein B; Provisional

Probab=99.17  E-value=6.6e-10  Score=110.89  Aligned_cols=117  Identities=17%  Similarity=0.282  Sum_probs=79.0

Q ss_pred             EEEEec-cCCCCCCCCceEECCeEEEEEEEEeeCCC----------eEEEEEEEecCcc----------------ccCCC
Q 024672          113 AVFEFS-QACGICTGTPVRIRGVTVGNVIRVNPSLK----------SIEAVVEVEDEKT----------------VIPQN  165 (264)
Q Consensus       113 v~~~F~-~a~GL~~Gs~V~~~GV~VG~V~~I~l~~~----------~v~v~v~i~~~~~----------------~Ip~d  165 (264)
                      +.+.|+ ++.||.+|+||+|+||+||+|++|.++.+          .+.|.++|+.+.+                .|.+|
T Consensus       289 ~~~~~~~sv~GL~~GapV~~rGv~VG~V~~i~l~~~~~~~~~~~~~~i~V~i~I~p~r~~~~~~~~~~~~~~l~~~v~~G  368 (547)
T PRK10807        289 YLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPGMRQRFNDDYRIPVLIRIEPERLKMQLGENFDVEQHLKELLKRG  368 (547)
T ss_pred             EEEEecCCcCCCCCCCcEEECCceEEEEEEEEeecccccccccCCceEEEEEEEEhhhhcccccccccHHHHHHHHHhCC
Confidence            344576 49999999999999999999999998522          4567777752111                26789


Q ss_pred             cEEEEEeCCcc-cceEEEEecCCCCCCCCCCCCCccccccCceecCCCeecccCCCCHHHHHHHHHHHHhhcCCCc
Q 024672          166 ALVEVNQSGLL-METLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIG  240 (264)
Q Consensus       166 s~a~I~~~~ll-G~~~I~L~pg~p~~~~~~~p~~~~~~~~g~~L~dg~~I~~~~~~sld~Ll~~l~~l~~~l~~~~  240 (264)
                      .+|++++.++| |..||+|.-.. .+++...+.+         ...--.|++ .+..+++|.+++..++++++...
T Consensus       369 LRA~L~s~~lLTG~lyV~Ld~~p-~a~~~~~~~~---------~~~~pvIPt-~ps~l~~l~~~~~~il~kin~lp  433 (547)
T PRK10807        369 LRASLKTGNLLTGALYVDLDFYP-NAKPWTGPRE---------FNGYPIIPT-VSGGLAQIQQKLMEALDKINNLP  433 (547)
T ss_pred             cEEEEccCCcccccEEEEEecCC-CCCcccCccC---------CCCCceeec-CCCCHHHHHHHHHHHHHHHhcCC
Confidence            99999999965 99999996331 1111100000         001133443 34468899999888888888754

>PRK10807 paraquat-inducible protein B; Provisional

Probab=98.91  E-value=1.5e-08  Score=101.19  Aligned_cols=102  Identities=22%  Similarity=0.309  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccCCCceEEEEEEeccCCCCCCC-CceEECCeEEEEEEEEeeCCC--eEEEEEEEe
Q 024672           80 GVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTG-TPVRIRGVTVGNVIRVNPSLK--SIEAVVEVE  156 (264)
Q Consensus        80 ~VGlfvl~~lv~l~~~~~~l~g~~~~~~~~~y~v~~~F~~a~GL~~G-s~V~~~GV~VG~V~~I~l~~~--~v~v~v~i~  156 (264)
                      .|+++-++++++..++++..    +..  ++.+|++.|+++.||.+| ++|+|+||+||+|++|+++++  +|.+++.|+
T Consensus        19 ~iWlvP~~a~~i~~~l~~~~----~~~--~G~~itl~~~~a~gl~~GkT~I~yrgv~VG~V~~v~l~~d~~~V~~~~~i~   92 (547)
T PRK10807         19 PVWIFPIVTALIGAWILFYH----FSH--QGPEVTLITTNAEGIEAGKTTIKSRSVDVGVVESVTLSDDLTHVEIKARLN   92 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHc--CCeEEEEEECCCCCcCcCCceeEECCceEEEEEEEEECCCCCeEEEEEEEC
Confidence            67788777777665554422    112  456788889999999999 999999999999999999864  578888885


Q ss_pred             cCcc--ccCCCcE-----EEEEeCC------cccceEEEEecCCC
Q 024672          157 DEKT--VIPQNAL-----VEVNQSG------LLMETLIDITPRDP  188 (264)
Q Consensus       157 ~~~~--~Ip~ds~-----a~I~~~~------llG~~~I~L~pg~p  188 (264)
                       ..+  .+.+||+     ++|...|      |+...||++.||.+
T Consensus        93 -~~~~~ll~~~trFWvv~p~is~~GvsgL~tLlsG~yi~~~pG~~  136 (547)
T PRK10807         93 -SGMEKLLHKDSVFWVVKPQIGREGISGLGTLLSGAYIELQPGSK  136 (547)
T ss_pred             -ccHHHhhcCCCEEEEeeeeEcCCCCcChHHhhccceEEecCCCC
Confidence             444  6899999     4555555      78788999999853

>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]

Probab=98.82  E-value=3.2e-08  Score=97.46  Aligned_cols=102  Identities=27%  Similarity=0.361  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccCCCceEEEEEEeccCCCCCCC-CceEECCeEEEEEEEEeeCC--CeEEEEEEEe
Q 024672           80 GVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTG-TPVRIRGVTVGNVIRVNPSL--KSIEAVVEVE  156 (264)
Q Consensus        80 ~VGlfvl~~lv~l~~~~~~l~g~~~~~~~~~y~v~~~F~~a~GL~~G-s~V~~~GV~VG~V~~I~l~~--~~v~v~v~i~  156 (264)
                      -++++-++++++.+++++..  ++  .  ++-.|++.|.++.||.+| ++|||.||+||.|++|++++  ++|+|+++|.
T Consensus        22 piWllPivAl~igawL~~~~--~~--~--~G~~Itl~f~saeGIeaGKT~Iry~gvdVG~V~~v~LsdDl~~V~V~a~i~   95 (553)
T COG3008          22 PIWLLPIVALLIGAWLLFQH--VQ--D--RGPEITLTFESAEGIEAGKTPIRYQGVDVGVVTDIKLSDDLKGVEVTAQIN   95 (553)
T ss_pred             chHHHHHHHHHHHHHHHHHH--HH--h--cCCeEEEEecCccccccCcceEEecceeeeEEEEEEeccCccceEEEEEeC
Confidence            34566666666554443322  11  2  344677789999999999 89999999999999999976  5889999997


Q ss_pred             -cCccccCCCcEEEEEe-----------CCcccceEEEEecCC
Q 024672          157 -DEKTVIPQNALVEVNQ-----------SGLLMETLIDITPRD  187 (264)
Q Consensus       157 -~~~~~Ip~ds~a~I~~-----------~~llG~~~I~L~pg~  187 (264)
                       +-+-.+.+|+++=+-.           .+|++..||.+.||.
T Consensus        96 ~da~~~L~~dT~FWvVkPr~slaGiSGLdtLlSG~YI~lqPG~  138 (553)
T COG3008          96 SDAKDLLREDTRFWVVKPRASLAGISGLDTLLSGNYIGLQPGK  138 (553)
T ss_pred             hhHHHHhhcCcEEEEEecccccccccccchhhcCceEEecCCC
Confidence             3334788888775443           236789999999994

>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]

Probab=96.41  E-value=0.0089  Score=59.65  Aligned_cols=59  Identities=15%  Similarity=0.211  Sum_probs=45.9

Q ss_pred             ceEEEEEEeccCCCCCCCCceEECCeEEEEEEEEeeCCC--eEEEEEEEecCcc--ccCCCcEE
Q 024672          109 RKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLK--SIEAVVEVEDEKT--VIPQNALV  168 (264)
Q Consensus       109 ~~y~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~~~--~v~v~v~i~~~~~--~Ip~ds~a  168 (264)
                      ...+++..-++.+.|.+|+||.|++++||+|.+-.++++  +|.+.+-|+ ..|  .|.++|++
T Consensus       160 ~gL~i~L~a~dlGsL~~GspVyfr~i~VGqV~sy~~d~d~~~V~i~vfI~-~py~~lV~~~sRF  222 (553)
T COG3008         160 GGLRIHLDAKDLGSLNVGSPVYFRKIPVGQVESYQFDPDKQGVTIQVFIE-APYDRLVKKDSRF  222 (553)
T ss_pred             CCeEEEEecCccCCcCCCCeeEEeceeeeeEEEEEEcCCCCeEEEEEEec-ChhhhhhccCcee
Confidence            345666666789999999999999999999999998764  677777775 333  56666665

>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed

Probab=84.30  E-value=5.5  Score=33.62  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=19.2

Q ss_pred             CCCCceEECCeEE-EEEEEEeeCCCeEEEEEEEec
Q 024672          124 CTGTPVRIRGVTV-GNVIRVNPSLKSIEAVVEVED  157 (264)
Q Consensus       124 ~~Gs~V~~~GV~V-G~V~~I~l~~~~v~v~v~i~~  157 (264)
                      ..|..||+.|.-+ |.|.   -+ +.-.+++.|.|
T Consensus        49 ~~g~~vrvgG~V~~gSi~---~~-~~~~~~F~ltD   79 (148)
T PRK13254         49 PAGRRFRLGGLVEKGSVQ---RG-DGLTVRFVVTD   79 (148)
T ss_pred             cCCCeEEEeEEEecCcEE---eC-CCCEEEEEEEe
Confidence            5788999998764 5444   32 33356777754

>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed

Probab=82.14  E-value=12  Score=31.87  Aligned_cols=47  Identities=26%  Similarity=0.424  Sum_probs=29.5

Q ss_pred             CCCCCceEECCe-EEEEEEEEeeCCCeEEEEEEEecCccccCCCcEEEEEeCCcccc
Q 024672          123 ICTGTPVRIRGV-TVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLME  178 (264)
Q Consensus       123 L~~Gs~V~~~GV-~VG~V~~I~l~~~~v~v~v~i~~~~~~Ip~ds~a~I~~~~llG~  178 (264)
                      -..+..+|+.|. .-|.|..   ++++..+.+.+.|.      ...+.|.-.|++=|
T Consensus        48 ~~~~~~~RlGG~V~~GSv~r---~~~~~~v~F~vtD~------~~~v~V~Y~GilPD   95 (155)
T PRK13159         48 AAGYQQFRLGGMVKAGSIQR---AADSLKVSFTVIDK------NAATQVEYTGILPD   95 (155)
T ss_pred             cccCCeEEEccEEecCcEEE---cCCCcEEEEEEEcC------CcEEEEEEccCCCc
Confidence            345688999987 5577655   55666788888743      34555555555433

>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed

Probab=82.07  E-value=14  Score=31.71  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=30.7

Q ss_pred             CCCCCceEECCeEE-EEEEEEeeCCCeEEEEEEEecCccccCCCcEEEEEeCCcccce
Q 024672          123 ICTGTPVRIRGVTV-GNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMET  179 (264)
Q Consensus       123 L~~Gs~V~~~GV~V-G~V~~I~l~~~~v~v~v~i~~~~~~Ip~ds~a~I~~~~llG~~  179 (264)
                      ...|..+|+.|.-+ |.|.   -+++...+.+.+.|.      ...+.|.-.|++=+.
T Consensus        54 ~~~g~~iRvgG~V~~GSi~---r~~~~l~v~F~vtD~------~~~v~V~Y~GilPDl  102 (160)
T PRK13165         54 PEVGQRLRVGGMVMPGSVQ---RDPNSLKVSFTLYDA------GGSVTVTYEGILPDL  102 (160)
T ss_pred             cCCCCEEEEeeEEeCCcEE---ECCCCeEEEEEEEcC------CeEEEEEEcccCCcc
Confidence            35789999998654 5554   356666788888743      334566555555443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00