Citrus Sinensis ID: 024694

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MGDDKSTIVMASRERDRDRELLIPVADSGDESSKPSSSSSSSHHAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEEccccccccccccccEEEEEEccccccccEEEEEEcccEEcccccHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccccccHHHccEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEcccccccccccccEEEEEEccccccccEEEEEcHHHEEEccccHHHHHHHHHHcccEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGDDKSTIVMASrerdrdrellipvadsgdesskpssssssshhagrETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHfvdgffspiyaqLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQIsaaispdqntqAFKEVAiirhprigeyaFGFITSSVVlqnysgeeelccvyvptnhlyigdiflintkdvirpnlsvrEGIEIVVSGGMSMPQILSTLetrmpldgsrpdrr
Flexible Loop (DISEMBL)
mgddkstivmasrerdrdrellipvadsgdesskpssssssshhagreTFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVvsggmsmpqilstletrmpldgsrpdrr
Low Complexity Region (SEG)
MGDDKSTIVMASRERDRDRELLIPVADSGDEsskpsssssssHHAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR
Disordered region (IsUnstruct)
*************************************************FSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGM***********************
Disordered Region (DISOPRED)
*******************************************************SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQIS***********F**VAIIRHPRIGEYAFGFITSSVV****SGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGM***********************
Disordered Region (DISEMBL)
MGDDKSTIVMASRERDRDRELLIPVA************************SKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMP*********
Disordered Region (DISPRO)
*************ERDRDRELLIPVAD*******************RETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQI******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGDDKSTIVMASRERDRDRELLIPVADSGDESSKPSSSSSSSHHAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
357520997	265	hypothetical protein MTR_8g103420 [Medic	0.996	0.992	0.860	1e-130
388492226	265	unknown [Medicago truncatula]	0.996	0.992	0.857	1e-129
217073912	265	unknown [Medicago truncatula]	0.996	0.992	0.853	1e-129
224143553	264	predicted protein [Populus trichocarpa]	0.981	0.981	0.875	1e-126
225445216	266	PREDICTED: uncharacterized protein LOC10	0.988	0.981	0.880	1e-124
449443151	265	PREDICTED: uncharacterized protein LOC10	0.988	0.984	0.857	1e-123
357520991	270	Cov1 [Medicago truncatula] gi|355524806|	0.988	0.966	0.838	1e-122
224119792	254	predicted protein [Populus trichocarpa]	0.935	0.972	0.908	1e-122
388517155	270	unknown [Medicago truncatula]	0.988	0.966	0.827	1e-120
449464664	267	PREDICTED: uncharacterized protein LOC10	0.996	0.985	0.819	1e-120

>gi|357520997|ref|XP_003630787.1| hypothetical protein MTR_8g103420 [Medicago truncatula] gi|355524809|gb|AET05263.1| hypothetical protein MTR_8g103420 [Medicago truncatula]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/266 (86%), Positives = 247/266 (92%), Gaps = 3/266 (1%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDES--SKPSSSSSSSHHAGRETFSKVVRSWA 58
           M DDKS   +    RDRDRELLIPVA+SGD++  S+P +SSSS HH+GRETFSKVV+SWA
Sbjct: 1   MVDDKSPSTVIG-NRDRDRELLIPVANSGDDTDASRPLASSSSMHHSGRETFSKVVQSWA 59

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVIL PIA+TFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS+TFIFL+GV
Sbjct: 60  SKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSITFIFLVGV 119

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGE 178
           FMSSWLGASVL LGEWFIKRMP VRHIYNASKQISAAISPDQN+QAFKEVAIIRHPR+GE
Sbjct: 120 FMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQNSQAFKEVAIIRHPRVGE 179

Query: 179 YAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVS 238
           YAFGFITSSVVLQ+YSG+EELCCVYVPTNHLYIGDIFL+NTKDVIRP LSVREGIEIVVS
Sbjct: 180 YAFGFITSSVVLQSYSGDEELCCVYVPTNHLYIGDIFLVNTKDVIRPTLSVREGIEIVVS 239

Query: 239 GGMSMPQILSTLETRMPLDGSRPDRR 264
           GGMSMPQILSTLE+R+P   SRPDRR
Sbjct: 240 GGMSMPQILSTLESRVPAQISRPDRR 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492226|gb|AFK34179.1| unknown [Medicago truncatula]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/266 (85%), Positives = 246/266 (92%), Gaps = 3/266 (1%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDES--SKPSSSSSSSHHAGRETFSKVVRSWA 58
           M DDKS   +    RDRDRELLIPVA+SGD++  S+P +SSSS HH+GRETFSKVV+SWA
Sbjct: 1   MVDDKSPSTVIG-NRDRDRELLIPVANSGDDTDASRPLASSSSMHHSGRETFSKVVQSWA 59

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVIL PIA+TFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS+TFIFL+GV
Sbjct: 60  SKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSITFIFLVGV 119

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGE 178
           FMSSWLGASVL LGEWFIKRMP VRHIYNASKQISAAISPDQN+QAFKEVAIIRHPR+GE
Sbjct: 120 FMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQNSQAFKEVAIIRHPRVGE 179

Query: 179 YAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVS 238
           YAFGFITSSVVLQ+YSG+EELCCVYVPTNHLYIGDIFL+NTKDVIRP LSVREGIEIVVS
Sbjct: 180 YAFGFITSSVVLQSYSGDEELCCVYVPTNHLYIGDIFLVNTKDVIRPTLSVREGIEIVVS 239

Query: 239 GGMSMPQILSTLETRMPLDGSRPDRR 264
           GGMSMPQIL TLE+R+P   SRPDRR
Sbjct: 240 GGMSMPQILPTLESRVPAQISRPDRR 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073912|gb|ACJ85316.1| unknown [Medicago truncatula]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/266 (85%), Positives = 246/266 (92%), Gaps = 3/266 (1%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDES--SKPSSSSSSSHHAGRETFSKVVRSWA 58
           M DDKS   +    RDRDRELLIPVA+SGD++  S+P +SSSS HH+GRETFSKVV+SWA
Sbjct: 1   MVDDKSPSTVIG-NRDRDRELLIPVANSGDDTDASRPLASSSSMHHSGRETFSKVVQSWA 59

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVIL PIA+TFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS+TFIFL+GV
Sbjct: 60  SKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSITFIFLVGV 119

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGE 178
           FMSSWLGASVL LGEWFIKRMP VRHIYNASKQISAAISPDQN+QAFKEVAIIRHPR+GE
Sbjct: 120 FMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQNSQAFKEVAIIRHPRVGE 179

Query: 179 YAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVS 238
           YAFGFITSSVVLQ+YSG+EELCCVYVPTNHLYIGDIFL+NTKDVIRP LSVR+GIEIVVS
Sbjct: 180 YAFGFITSSVVLQSYSGDEELCCVYVPTNHLYIGDIFLVNTKDVIRPTLSVRKGIEIVVS 239

Query: 239 GGMSMPQILSTLETRMPLDGSRPDRR 264
           GGMSMPQ LSTLE+R+P   SRPDRR
Sbjct: 240 GGMSMPQTLSTLESRVPAQISRPDRR 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143553|ref|XP_002324995.1| predicted protein [Populus trichocarpa] gi|222866429|gb|EEF03560.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/264 (87%), Positives = 246/264 (93%), Gaps = 5/264 (1%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDE--SSKPSSSSSSSHHA---GRETFSKVVR 55
           MGD+KS IVM SR+RDRDRELLIPVAD+ D   +SKPSSSSSSS  +   GRETF K VR
Sbjct: 1   MGDEKSAIVMTSRDRDRDRELLIPVADTPDLDIASKPSSSSSSSSSSHHSGRETFCKFVR 60

Query: 56  SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFL 115
           SWASKKFMTGCVILFPIA+TFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS+TFIFL
Sbjct: 61  SWASKKFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSLTFIFL 120

Query: 116 IGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPR 175
           +GVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPR
Sbjct: 121 VGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPR 180

Query: 176 IGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEI 235
           IGEYAFGFITS+V LQNYSGEEELCCVYVPTNHLYIGDIFL+ TKDVIRPNLSVREGIEI
Sbjct: 181 IGEYAFGFITSTVTLQNYSGEEELCCVYVPTNHLYIGDIFLVTTKDVIRPNLSVREGIEI 240

Query: 236 VVSGGMSMPQILSTLETRMPLDGS 259
           VVSGGMSMPQ+LSTL++ + +D S
Sbjct: 241 VVSGGMSMPQVLSTLDSSISVDRS 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445216|ref|XP_002284354.1| PREDICTED: uncharacterized protein LOC100262854 [Vitis vinifera] gi|297738813|emb|CBI28058.3| unnamed protein product [Vitis vinifera]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/267 (88%), Positives = 254/267 (95%), Gaps = 6/267 (2%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADS---GDESSKPSSSSSSSHHAGRETFSKVVRSW 57
           MGD+KS+IVMA+RERDR  ELLIPV+DS   GD SSKPSSS+SSSHH GRETF KVVRSW
Sbjct: 1   MGDEKSSIVMATRERDR--ELLIPVSDSVNDGDASSKPSSSASSSHHPGRETFYKVVRSW 58

Query: 58  ASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIG 117
           ASKKFMTGCVILFPIA+TFYITWWFIHFVDGFFSPIYAQLGI+IFGLGFITS+TFIFL+G
Sbjct: 59  ASKKFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYAQLGINIFGLGFITSITFIFLVG 118

Query: 118 VFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIG 177
           VFMSSWLGASVL LGEWFIKRMPFVRHIY+ASKQISAAISPDQNTQAFKEVAIIRHPRIG
Sbjct: 119 VFMSSWLGASVLGLGEWFIKRMPFVRHIYSASKQISAAISPDQNTQAFKEVAIIRHPRIG 178

Query: 178 EYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVV 237
           EYAFGFITSSVVLQ+Y+GEEELCCVYVPTNHLYIGDIFL+N KDVIRPNLSVREGIEIVV
Sbjct: 179 EYAFGFITSSVVLQSYTGEEELCCVYVPTNHLYIGDIFLVNCKDVIRPNLSVREGIEIVV 238

Query: 238 SGGMSMPQILSTLETRM-PLDGSRPDR 263
           SGGMSMPQILST+++R+  +D SRP+R
Sbjct: 239 SGGMSMPQILSTVDSRITTVDRSRPER 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443151|ref|XP_004139344.1| PREDICTED: uncharacterized protein LOC101208869 [Cucumis sativus] gi|449516298|ref|XP_004165184.1| PREDICTED: uncharacterized protein LOC101229165 [Cucumis sativus]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/266 (85%), Positives = 248/266 (93%), Gaps = 5/266 (1%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSG--DESSKPSSSSSSSHHAGRETFSKVVRSWA 58
           MGD+KS I MASRERDR  ELLIPVA+S   + S+KPSSSSSSSHH+GRETFSKVVRSWA
Sbjct: 1   MGDEKSAIAMASRERDR--ELLIPVAESAIDEASAKPSSSSSSSHHSGRETFSKVVRSWA 58

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVILFPIA+TFYITWWFI FVDGFFSPIYA LGI+IFGLGF+TS+TFIFL+GV
Sbjct: 59  SKKFMTGCVILFPIAITFYITWWFIRFVDGFFSPIYAHLGINIFGLGFVTSITFIFLVGV 118

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGE 178
           FMSSWLGASVL LGEWFIKRMPFVRHIYNASKQIS+AIS DQN+QAFKEVAIIRHPRIGE
Sbjct: 119 FMSSWLGASVLGLGEWFIKRMPFVRHIYNASKQISSAISSDQNSQAFKEVAIIRHPRIGE 178

Query: 179 YAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVS 238
           YAFGFITSSVVLQ+YSGEEELCCVYVPTNHLYIGD+FL++TKDVIRPNLSVREGIEIVVS
Sbjct: 179 YAFGFITSSVVLQSYSGEEELCCVYVPTNHLYIGDVFLVHTKDVIRPNLSVREGIEIVVS 238

Query: 239 GGMSMPQILSTLETR-MPLDGSRPDR 263
           GGMSMPQILST+ +  M +D SR +R
Sbjct: 239 GGMSMPQILSTMNSEIMTIDRSRLER 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520991|ref|XP_003630784.1| Cov1 [Medicago truncatula] gi|355524806|gb|AET05260.1| Cov1 [Medicago truncatula]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/266 (83%), Positives = 242/266 (90%), Gaps = 5/266 (1%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDESSKPSSSSSSS--HHAGRETFSKVVRSWA 58
           M D+KS+  +      RDRELLIPVA+SGD S+    SSSSS  HHAGRETFSKVV+SWA
Sbjct: 8   MVDEKSSSTVIG---GRDRELLIPVANSGDHSNASKPSSSSSSVHHAGRETFSKVVQSWA 64

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVILFPIA+TFYITWWFIHFVDGFFSPIY  LGI+IFGLGFITS+TFIFLIG+
Sbjct: 65  SKKFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYVHLGINIFGLGFITSITFIFLIGI 124

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGE 178
           FMSSWLGASVL LGEWFIKRMP VRHIYNASKQISAAISPDQN+QAFKEVAIIRHPR+GE
Sbjct: 125 FMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQNSQAFKEVAIIRHPRVGE 184

Query: 179 YAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVS 238
           YA GFITSSVVLQ YSG+EELCCVYVPTNHLYIGDIFL+NTKDVIRPNLSVREGIEIVVS
Sbjct: 185 YALGFITSSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNTKDVIRPNLSVREGIEIVVS 244

Query: 239 GGMSMPQILSTLETRMPLDGSRPDRR 264
           GGMSMPQILSTL++ +P++ SRPDRR
Sbjct: 245 GGMSMPQILSTLDSHVPVEISRPDRR 270

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119792|ref|XP_002331162.1| predicted protein [Populus trichocarpa] gi|222873245|gb|EEF10376.1| predicted protein [Populus trichocarpa]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/250 (90%), Positives = 240/250 (96%), Gaps = 3/250 (1%)

Query: 17  RDRELLIPVADSGDE--SSKPSSSS-SSSHHAGRETFSKVVRSWASKKFMTGCVILFPIA 73
           RDRELLIPVADS D   +SKPSSSS SSSHH+GRETF KVVRSWASKKFMTGCVILFPIA
Sbjct: 4   RDRELLIPVADSPDVEVASKPSSSSSSSSHHSGRETFYKVVRSWASKKFMTGCVILFPIA 63

Query: 74  VTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGE 133
           +TFYITWWF+HFVDGFFSPIYA LGIDIFGLGFITS+TFIFL+GVFMSSWLGASVLSLGE
Sbjct: 64  ITFYITWWFVHFVDGFFSPIYAHLGIDIFGLGFITSITFIFLVGVFMSSWLGASVLSLGE 123

Query: 134 WFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNY 193
           WFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSV+LQNY
Sbjct: 124 WFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVILQNY 183

Query: 194 SGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETR 253
           SGEEELCCVYVPTNHLYIGDIFL+NTKDVIRPNLSVREGIEIVVSGGMSMPQILSTL++R
Sbjct: 184 SGEEELCCVYVPTNHLYIGDIFLVNTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLDSR 243

Query: 254 MPLDGSRPDR 263
           + +D SR +R
Sbjct: 244 ISVDRSRSER 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517155|gb|AFK46639.1| unknown [Medicago truncatula]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/266 (82%), Positives = 240/266 (90%), Gaps = 5/266 (1%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDESSKPSSSSSSS--HHAGRETFSKVVRSWA 58
           M D+KS+  +      RDRELLIPVA+SGD S+    SSSSS  HHAGRETFSKVV+SWA
Sbjct: 8   MVDEKSSSTVIG---GRDRELLIPVANSGDHSNASKPSSSSSSVHHAGRETFSKVVQSWA 64

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVILFPIA+TFYITWWFIHFVDGFFSPIY  LGI+IFGLGFIT +TFIFLIG+
Sbjct: 65  SKKFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYVHLGINIFGLGFITFITFIFLIGI 124

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGE 178
           F+SSWLGASVL LGEWFIKRMP VRHIYNASKQISAAISPDQN+QAFKEVAIIRHPR+GE
Sbjct: 125 FVSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQNSQAFKEVAIIRHPRVGE 184

Query: 179 YAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVS 238
           YA GFITSSVVLQ YSG+EELCCVYVPTNHLYIGDIF +NTKDVIRPNLSVREGIEIVVS
Sbjct: 185 YALGFITSSVVLQTYSGDEELCCVYVPTNHLYIGDIFFVNTKDVIRPNLSVREGIEIVVS 244

Query: 239 GGMSMPQILSTLETRMPLDGSRPDRR 264
           GGMSMPQILSTL++ +P++ SRPDRR
Sbjct: 245 GGMSMPQILSTLDSHVPVEISRPDRR 270

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464664|ref|XP_004150049.1| PREDICTED: uncharacterized protein LOC101222032 [Cucumis sativus]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/266 (81%), Positives = 238/266 (89%), Gaps = 3/266 (1%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADS--GDESSKPSSSSSSSHHAGRETFSKVVRSWA 58
           M DDK+ I +A+R+R+RD ELLIPVA S   D S KPSSSSSSS   GRETF +V RSWA
Sbjct: 1   MADDKAPITIATRDRERDIELLIPVAASPKDDASCKPSSSSSSSQQTGRETFYRVFRSWA 60

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGC ILFPIA+TFYITWWFIHFVDGFFSPIYAQLGIDIFGLGF TSVTFIFL+GV
Sbjct: 61  SKKFMTGCCILFPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFATSVTFIFLVGV 120

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGE 178
           FMSSWLGASVL+LGEWFIKRMPFVRHIYNASKQIS+AISPDQNT AFKEVAIIRHPR+GE
Sbjct: 121 FMSSWLGASVLALGEWFIKRMPFVRHIYNASKQISSAISPDQNTNAFKEVAIIRHPRVGE 180

Query: 179 YAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVS 238
           YAFGFITS+V LQ+YSGEEELCCVYVPTNHLYIGD+FL+N++DV RPNLSVREGIEIVVS
Sbjct: 181 YAFGFITSTVTLQSYSGEEELCCVYVPTNHLYIGDVFLVNSQDVTRPNLSVREGIEIVVS 240

Query: 239 GGMSMPQILSTLETRM-PLDGSRPDR 263
           GGMSMPQILS L++   P+D  R  R
Sbjct: 241 GGMSMPQILSILDSDFRPIDSRRLTR 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2061668	268	COV1 "AT2G20120" [Arabidopsis	0.943	0.929	0.782	1.3e-107
TAIR|locus:2061654	256	LCV1 "AT2G20130" [Arabidopsis	0.909	0.937	0.798	6.7e-104
TAIR|locus:2018640	261	LCV2 "AT1G43130" [Arabidopsis	0.753	0.762	0.758	1.3e-82
UNIPROTKB|Q3AEZ4	211	CHY_0429 "Putative uncharacter	0.738	0.924	0.346	6.6e-26
TIGR_CMR|CHY_0429	211	CHY_0429 "conserved hypothetic	0.738	0.924	0.346	6.6e-26
UNIPROTKB|Q5LRR3	224	SPO2062 "Uncharacterized prote	0.689	0.812	0.283	3.5e-20
TIGR_CMR|SPO_2062	224	SPO_2062 "conserved hypothetic	0.689	0.812	0.283	3.5e-20
UNIPROTKB|Q3Z7T7	214	DET0989 "Putative uncharacteri	0.708	0.873	0.264	5.7e-20
TIGR_CMR|DET_0989	214	DET_0989 "conserved hypothetic	0.708	0.873	0.264	5.7e-20
UNIPROTKB|Q0C0Q5	237	HNE_1988 "Putative uncharacter	0.708	0.789	0.281	4e-19

TAIR|locus:2061668 COV1 "AT2G20120" [Arabidopsis thaliana (taxid:3702)]

 Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
 Identities = 202/258 (78%), Positives = 221/258 (85%)

Query:     1 MGDDKSTIVMASRERDRDRELLIPVADSGDEX-------XXXXXXXXXXHHAGRETFSKV 53
             MGD+K  IVMA+RERDR  ELLIPVADSGD+                  H +  ET S  
Sbjct:     1 MGDEKPVIVMANRERDR--ELLIPVADSGDKDDGSSSKPSSSSSASSSSHQSSHETLSLF 58

Query:    54 VRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFI 113
             +R WASKKFMTGCVIL PIA+TFYITWWFIHFVDGFFSPIYAQLGI++FG GF+TS+ FI
Sbjct:    59 IRGWASKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINVFGFGFLTSIAFI 118

Query:   114 FLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRH 173
             FL+GVFMSSWLGASVL+LGEWFIKRMPFVRHIYNASKQIS AISPDQNTQAFKEVAIIRH
Sbjct:   119 FLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRH 178

Query:   174 PRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGI 233
             PR+GEYAFGFITS+VVLQNY  EEELCCVYVPTNHLYIGD+ L+N+ DVIRPNLSVREGI
Sbjct:   179 PRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDLLLVNSNDVIRPNLSVREGI 238

Query:   234 EIVVSGGMSMPQILSTLE 251
             EIVVSGGMSMPQILST++
Sbjct:   239 EIVVSGGMSMPQILSTVD 256

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009734 "auxin mediated signaling pathway" evidence=IGI

GO:0010222 "stem vascular tissue pattern formation" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2061654 LCV1 "AT2G20130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 198/248 (79%), Positives = 212/248 (85%)

Query:    10 MASRERDRDRELLIPVADSGDEXX------XXXXXXXXXHHAGRETFSKVVRSWASKKFM 63
             MA+RERDR  ELLIPVAD GD+                 H +G ET S  +R WASKKFM
Sbjct:     1 MANRERDR--ELLIPVADFGDKDDGSSSKPSSSSSASSSHQSGHETLSLFIRGWASKKFM 58

Query:    64 TGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSW 123
             TGCVIL PIAVTFY TWWFIHFVDGFFSPIYA LGI+IFG GF+TS+ FIFL+GVFMSSW
Sbjct:    59 TGCVILLPIAVTFYTTWWFIHFVDGFFSPIYALLGINIFGFGFLTSIAFIFLVGVFMSSW 118

Query:   124 LGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGF 183
             LGASVL+LGEWFIKRMPFVRHIYNASKQIS AISPDQNTQAFKEVAIIRHPR+GEYAFGF
Sbjct:   119 LGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGF 178

Query:   184 ITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSM 243
             ITS+VVLQNY  EEELCCVYVPTNHLYIGDI L+N+ DVIRPNLSVREGIEIVVSGGMSM
Sbjct:   179 ITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVVSGGMSM 238

Query:   244 PQILSTLE 251
             PQILSTL+
Sbjct:   239 PQILSTLD 246

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2018640 LCV2 "AT1G43130" [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 151/199 (75%), Positives = 177/199 (88%)

Query:    53 VVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTF 112
             V++SW SKKFMTG V+LFP+AVTF ITWWFI FVDGFFSPIY  LG+DIFGLGFITSV F
Sbjct:    44 VLQSWVSKKFMTGFVVLFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLF 103

Query:   113 IFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIR 172
              F +G+F SSWLG++V  LGE FI+RMPFV+HIY+ASKQIS AISPDQNT AFKEVAIIR
Sbjct:   104 TFFVGIFASSWLGSTVFWLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIR 163

Query:   173 HPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREG 232
             HPRIGEYAFGFITSSV LQ   GEEELC VYVPTNHLYIGD+FL++++++IRPNLS+REG
Sbjct:   164 HPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREG 223

Query:   233 IEIVVSGGMSMPQILSTLE 251
             IEI+VS GM+MPQ++S ++
Sbjct:   224 IEIIVSVGMTMPQVISHVD 242

GO:0003674 "molecular_function" evidence=ND

GO:0010222 "stem vascular tissue pattern formation" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|Q3AEZ4 CHY_0429 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 72/208 (34%), Positives = 116/208 (55%)

Query:    45 AGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVD----GFFSPIYAQLGID 100
             AGRE    + +   +  F+TG  ++ P A+T YI +    F D    GFF+ I+   GID
Sbjct:     2 AGREEGRDIFKKLGNY-FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIF---GID 57

Query:   101 IFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQ-ISAAISPD 159
             I GLG +T    + ++G+  ++++G  +L   E    ++P  R +Y  SKQ I   + P+
Sbjct:    58 IPGLGVLTVALLVPIVGMLATNFIGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPE 117

Query:   160 QNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQ-NYSGEEELCCVYVPTN-HLYIGDIFLI 217
             ++  AFK V + R+P+ G YA GFIT S   + N    E+L  V++PT  +   G +  +
Sbjct:   118 RD--AFKSVVLARYPKDGSYALGFITGSGFDEINEKTREKLLPVFLPTTPNPTSGWLLYL 175

Query:   218 NTKDVIRPNLSVREGIEIVVSGGMSMPQ 245
               KD+I  NLSV + ++I+VSGG+  P+
Sbjct:   176 PEKDIIPLNLSVEDALKIIVSGGIVQPE 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0429 CHY_0429 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 72/208 (34%), Positives = 116/208 (55%)

Query:    45 AGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVD----GFFSPIYAQLGID 100
             AGRE    + +   +  F+TG  ++ P A+T YI +    F D    GFF+ I+   GID
Sbjct:     2 AGREEGRDIFKKLGNY-FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIF---GID 57

Query:   101 IFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQ-ISAAISPD 159
             I GLG +T    + ++G+  ++++G  +L   E    ++P  R +Y  SKQ I   + P+
Sbjct:    58 IPGLGVLTVALLVPIVGMLATNFIGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPE 117

Query:   160 QNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQ-NYSGEEELCCVYVPTN-HLYIGDIFLI 217
             ++  AFK V + R+P+ G YA GFIT S   + N    E+L  V++PT  +   G +  +
Sbjct:   118 RD--AFKSVVLARYPKDGSYALGFITGSGFDEINEKTREKLLPVFLPTTPNPTSGWLLYL 175

Query:   218 NTKDVIRPNLSVREGIEIVVSGGMSMPQ 245
               KD+I  NLSV + ++I+VSGG+  P+
Sbjct:   176 PEKDIIPLNLSVEDALKIIVSGGIVQPE 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRR3 SPO2062 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 55/194 (28%), Positives = 103/194 (53%)

Query:    62 FMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQ-------LGIDIFGLGFITSVTFIF 114
             F+TG V++ P+ +T ++ W  + +VD F  P+          +GI++ G+G I  + F  
Sbjct:    24 FLTGIVVIAPVGLTIWLFWSVVGWVDSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTI 83

Query:   115 LIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHP 174
             ++G      +G S++   E  + RMP VR +Y+  KQIS  +   Q  ++F++  +I++P
Sbjct:    84 VVGWIAKGIIGRSLIQYAEGVVDRMPVVRSVYSGIKQISETVFA-QTERSFEQACLIQYP 142

Query:   175 RIGEYAFGFITSSV---VLQNYSGEEELCCVYVPTN-HLYIGDIFLINTKDVIRPNLSVR 230
             R G +A GF++++    V         L  V+VPT  +   G +     +DVI  +++V 
Sbjct:   143 RRGIWAIGFVSTTAKGEVADKAETGGRLMSVFVPTTPNPTSGFLLYFPEEDVIILDMTVE 202

Query:   231 EGIEIVVSGGMSMP 244
             +  ++V+S G+  P
Sbjct:   203 DAAKLVISAGLVYP 216

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2062 SPO_2062 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 55/194 (28%), Positives = 103/194 (53%)

Query:    62 FMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQ-------LGIDIFGLGFITSVTFIF 114
             F+TG V++ P+ +T ++ W  + +VD F  P+          +GI++ G+G I  + F  
Sbjct:    24 FLTGIVVIAPVGLTIWLFWSVVGWVDSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTI 83

Query:   115 LIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHP 174
             ++G      +G S++   E  + RMP VR +Y+  KQIS  +   Q  ++F++  +I++P
Sbjct:    84 VVGWIAKGIIGRSLIQYAEGVVDRMPVVRSVYSGIKQISETVFA-QTERSFEQACLIQYP 142

Query:   175 RIGEYAFGFITSSV---VLQNYSGEEELCCVYVPTN-HLYIGDIFLINTKDVIRPNLSVR 230
             R G +A GF++++    V         L  V+VPT  +   G +     +DVI  +++V 
Sbjct:   143 RRGIWAIGFVSTTAKGEVADKAETGGRLMSVFVPTTPNPTSGFLLYFPEEDVIILDMTVE 202

Query:   231 EGIEIVVSGGMSMP 244
             +  ++V+S G+  P
Sbjct:   203 DAAKLVISAGLVYP 216

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z7T7 DET0989 "Putative uncharacterized protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 51/193 (26%), Positives = 100/193 (51%)

Query:    61 KFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIF-GLGFITSVTFIFLIGVF 119
             +F+TG   + PI     +  W  + +DG   P+        F GLG + ++  I+L+G+ 
Sbjct:    15 RFLTGLAFVLPIGAALGLLIWVFNIIDGLLKPVIEFFFNWYFPGLGLLVTLVLIYLVGLI 74

Query:   120 MSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEY 179
             +S++ G  +L   +  + ++P    +YN++KQ+   +    N  +FKE  ++  PR G +
Sbjct:    75 LSNYFGKQILGWVDKILVKVPIFNQVYNSAKQVIETLGVS-NKVSFKEAVMVEFPRTGMH 133

Query:   180 AFGFITSSVVLQNYSGEEELCCVYVPTN-HLYIGDIFLINTKDVIRPNLSVREGIEIVVS 238
             +  FIT+     N +GE+ L  VYVP + +   G + L+    + R N+SV + ++ ++S
Sbjct:   134 SLAFITNETT--NSAGEK-LYLVYVPGSPNPTSGFLELLRENQIERVNVSVEDAMKTLIS 190

Query:   239 GGMSMPQILSTLE 251
              G+  P  +  ++
Sbjct:   191 CGLVFPDNVQAID 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0989 DET_0989 "conserved hypothetical protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 51/193 (26%), Positives = 100/193 (51%)

Query:    61 KFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIF-GLGFITSVTFIFLIGVF 119
             +F+TG   + PI     +  W  + +DG   P+        F GLG + ++  I+L+G+ 
Sbjct:    15 RFLTGLAFVLPIGAALGLLIWVFNIIDGLLKPVIEFFFNWYFPGLGLLVTLVLIYLVGLI 74

Query:   120 MSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEY 179
             +S++ G  +L   +  + ++P    +YN++KQ+   +    N  +FKE  ++  PR G +
Sbjct:    75 LSNYFGKQILGWVDKILVKVPIFNQVYNSAKQVIETLGVS-NKVSFKEAVMVEFPRTGMH 133

Query:   180 AFGFITSSVVLQNYSGEEELCCVYVPTN-HLYIGDIFLINTKDVIRPNLSVREGIEIVVS 238
             +  FIT+     N +GE+ L  VYVP + +   G + L+    + R N+SV + ++ ++S
Sbjct:   134 SLAFITNETT--NSAGEK-LYLVYVPGSPNPTSGFLELLRENQIERVNVSVEDAMKTLIS 190

Query:   239 GGMSMPQILSTLE 251
              G+  P  +  ++
Sbjct:   191 CGLVFPDNVQAID 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C0Q5 HNE_1988 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 56/199 (28%), Positives = 101/199 (50%)

Query:    56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIY-------AQLGIDIFGLGFIT 108
             +W   +F+ G +I  PI  TF I  + I+ +D    P+          L   + G G I 
Sbjct:    24 AWLRARFVAGMLIALPIVATFVILEFLINLIDSRVVPLLPPSLRPETYLDYAVPGFGLII 83

Query:   109 SVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEV 168
              + F+ L+G   +++LG   + L +  + R+P VR +Y+  KQI      +   Q +KEV
Sbjct:    84 LILFLTLVGAVATNFLGKFFVDLTDRVLTRVPVVRSVYSVFKQIRDVFQNNTAGQ-YKEV 142

Query:   169 AIIRHPRIGEYAFGFITSSVV--LQNYSGEEELCCVYVPTN-HLYIGDIFLINTKDVIRP 225
             A++ +PR G +  GF+   +   ++   GE  +  ++VPT  +   G +  +    ++R 
Sbjct:   143 AMVEYPREGSWVIGFVAGPIKGEMRQRLGENFIG-IFVPTTPNPTSGFLLYVAEAKIVRL 201

Query:   226 NLSVREGIEIVVSGGMSMP 244
             ++SV EG +I+ SGG+ +P
Sbjct:   202 DMSVEEGAKIIFSGGLVVP 220

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0020005701 hypothetical protein (265 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
COG2928	222	COG2928, COG2928, Uncharacterized conserved protei	1e-31
pfam04367	108	pfam04367, DUF502, Protein of unknown function (DU	4e-29

>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function unknown]

 Score =  115 bits (291), Expect = 1e-31
 Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 12/203 (5%)

Query: 60  KKFMTGCVILFPIAVTFYITWWFIHFVDGFFSP-------IYAQLGIDIFGLGFITSVTF 112
           K F+TG ++L P+A+T ++  W    +D F  P              +I GLG I ++  
Sbjct: 8   KYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIIL 67

Query: 113 IFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIR 172
           IFL+G    + +G S+LSLG+  ++R+P V+ IY ++KQ+   +  DQ + +FK+V ++ 
Sbjct: 68  IFLLGFLARNMIGRSLLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQ-SGSFKQVVLVE 126

Query: 173 HPRIGEYAFGFITS--SVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSV 229
            PR G +A  F+T   +  L+   G   +  V+VPT         L+  K+ I P +++V
Sbjct: 127 FPRRGIWAIAFVTGEKAGELKEKEG-RPMVAVFVPTTPNPTSGFLLLVPKEDIVPLDMTV 185

Query: 230 REGIEIVVSGGMSMPQILSTLET 252
            + ++ ++SGG+  P  L   + 
Sbjct: 186 EDALKYIISGGVVAPDSLPAKDL 208

Length = 222

>gnl|CDD|218047 pfam04367, DUF502, Protein of unknown function (DUF502)

 Score =  106 bits (266), Expect = 4e-29
 Identities = 35/102 (34%), Positives = 62/102 (60%), Gaps = 2/102 (1%)

Query: 106 FITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAF 165
            I ++  IFL+G+   +++G  +LSLGE  + R+P VR IY++ KQ+   +  D+  ++F
Sbjct: 1   LILTLLLIFLVGLLARNFIGRWLLSLGERLLNRIPLVRSIYSSVKQLVETLLGDKK-KSF 59

Query: 166 KEVAIIRHPRIGEYAFGFITSSVVLQNYSG-EEELCCVYVPT 206
           ++V ++ +PR G +A GF+T     +      E+L  V+VPT
Sbjct: 60  RKVVLVEYPRPGLWAIGFVTGEDGGELPERLGEDLVAVFVPT 101

Predicted to be an integral membrane protein. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
COG2928	222	Uncharacterized conserved protein [Function unknow	100.0
PF04367	108	DUF502: Protein of unknown function (DUF502); Inte	99.97
TIGR02120	399	GspF general secretion pathway protein F. This mem	87.48
cd01277	103	HINT_subgroup HINT (histidine triad nucleotide-bin	87.17
PRK15350	88	type III secretion system protein SsaS; Provisiona	86.98
PRK05700	89	fliQ flagellar biosynthesis protein FliQ; Validate	85.68
TIGR01402	88	fliQ flagellar biosynthetic protein FliQ. This mod	84.92
PRK06010	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	84.05
cd01275	126	FHIT FHIT (fragile histidine family): FHIT protein	82.84
PRK12781	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	81.84
cd00468	86	HIT_like HIT family: HIT (Histidine triad) protein	81.81
COG1459	397	PulF Type II secretory pathway, component PulF [Ce	81.47
COG1684	258	FliR Flagellar biosynthesis pathway, component Fli	80.64
TIGR01403	81	fliQ_rel_III type III secretion protein, HrpO fami	80.51

>COG2928 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.6e-54  Score=383.13  Aligned_cols=195  Identities=30%  Similarity=0.640  Sum_probs=175.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-------hhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024694           55 RSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYA-------QLGIDIFGLGFITSVTFIFLIGVFMSSWLGAS  127 (264)
Q Consensus        55 r~~l~~~FltGLlvLLPi~iTi~Il~w~~~~vd~~~~pi~~-------~lg~~ipGlgll~~llliflvG~l~~~~lg~~  127 (264)
                      .+.+||+|+|||++++|+++|+|+++|+++++|+++.|.+.       +++.+++|+|+++.+++++++|+++++.+||+
T Consensus         3 ~~~lk~~fltGLlvllPlaiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~~~~i~~lg~il~iili~l~G~l~~~~ig~~   82 (222)
T COG2928           3 AKRLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLGFLARNMIGRS   82 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhchhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            34567889999999999999999999999999999998552       34667899999999999999999999999999


Q ss_pred             HHHHHHHhhchhceehhHHHHHHHHHHHhCCCcCcCCcccEEEEEeCCCCeeEEEEEccccccc-ccCCCCceEEEEecC
Q 024694          128 VLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQ-NYSGEEELCCVYVPT  206 (264)
Q Consensus       128 l~~~~E~~l~rIPlVk~IY~~iKqv~~~~~~~~~~~~Fk~VVlV~~P~~g~~~iGFvT~~~~~~-~~~~~e~~v~VfvPt  206 (264)
                      +++++|++++|||++|+||+++||+++++.+++ ..+||+||+||||++|+|++||+|++...+ +...++++++||+||
T Consensus        83 l~~~~d~~L~RiPlv~~IY~s~kqi~etll~~~-~~sfk~vvlVefP~~G~~~i~fvtg~~~~e~~~~~~~~~v~VfvPT  161 (222)
T COG2928          83 LLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQ-SGSFKQVVLVEFPRRGIWAIAFVTGEKAGELKEKEGRPMVAVFVPT  161 (222)
T ss_pred             HHHHHHHHHccCccHHHHHHHHHHHHHHHHhcC-CccceeeEEEECCCCCcEEEEEeccCCCcchhcccCCceEEEEcCC
Confidence            999999999999999999999999999998765 458999999999999999999999996421 224467999999999


Q ss_pred             CC-CCCeeEEEEeCCCeecCCCCHHHHHHHHhhccccCCCCcccc
Q 024694          207 NH-LYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTL  250 (264)
Q Consensus       207 sp-~tsG~l~lV~~~~V~~lDmsveeAmk~iiS~Gv~~p~~~~~~  250 (264)
                      +| ||+||+++||+||++++|||+|||+|+++|||++.|+.....
T Consensus       162 TPNPTsGfl~~Vpkedi~~ldmtvEda~k~iIS~G~v~p~~~~~~  206 (222)
T COG2928         162 TPNPTSGFLLLVPKEDIVPLDMTVEDALKYIISGGVVAPDSLPAK  206 (222)
T ss_pred             CCCCCcceEEEEEHHHceeccccHHHHhheeeeccccCCCccccc
Confidence            99 789999999999999999999999999999999999855443

>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins

Probab=99.97  E-value=3.2e-30  Score=207.05  Aligned_cols=106  Identities=33%  Similarity=0.613  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhceehhHHHHHHHHHHHhCCCcCcCCcccEEEEEeCCCCeeEEEEEc
Q 024694          106 FITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFIT  185 (264)
Q Consensus       106 ll~~llliflvG~l~~~~lg~~l~~~~E~~l~rIPlVk~IY~~iKqv~~~~~~~~~~~~Fk~VVlV~~P~~g~~~iGFvT  185 (264)
                      +++++++||++|+++++++|+++++++|+++.|||+||+||+++||++++|+++++ +.|++||+||||++|.|++||+|
T Consensus         1 ~l~~l~~i~~iG~l~~~~~g~~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~~~~-~~f~~vVlV~~p~~g~~~igFvT   79 (108)
T PF04367_consen    1 FLILLLLIFLIGLLARNYFGKWLLNWLERLLQRIPLVKSIYSSIKQLVESFSGDKK-KSFKKVVLVEFPRPGMYVIGFVT   79 (108)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhhccc-ccCCeEEEEEecCCCcEEEEEEe
Confidence            35678899999999999999999999999999999999999999999999998754 44999999999999999999999


Q ss_pred             cccccc-ccCCCCceEEEEecCCCC-CCe
Q 024694          186 SSVVLQ-NYSGEEELCCVYVPTNHL-YIG  212 (264)
Q Consensus       186 ~~~~~~-~~~~~e~~v~VfvPtsp~-tsG  212 (264)
                      ++...+ ....++++++||+||||+ ++|
T Consensus        80 ~~~~~~~~~~~~~~~v~VfvPtsPnPtsG  108 (108)
T PF04367_consen   80 GEDPGELPGKTGEEMVAVFVPTSPNPTSG  108 (108)
T ss_pred             ccCcchhhccCCCCEEEEEeCCCCCCCCC
Confidence            997532 222245999999999995 676

>TIGR02120 GspF general secretion pathway protein F

Probab=87.48  E-value=7  Score=37.45  Aligned_cols=22  Identities=9%  Similarity=0.083  Sum_probs=18.0

Q ss_pred             HHHHHHHhhchhceehhHHHHH
Q 024694          128 VLSLGEWFIKRMPFVRHIYNAS  149 (264)
Q Consensus       128 l~~~~E~~l~rIPlVk~IY~~i  149 (264)
                      .-.+.|+++.|+|+++.+|...
T Consensus       243 ~r~~~~~~l~kiP~~g~~~~~~  264 (399)
T TIGR02120       243 FRLRFDRRLLRLPVIGRLVRGL  264 (399)
T ss_pred             HHHHHHHHHhcccchHHHHHHH
Confidence            4457789999999999988754

This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.

>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides

Probab=87.17  E-value=1.2  Score=34.02  Aligned_cols=42  Identities=19%  Similarity=0.279  Sum_probs=35.6

Q ss_pred             CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHHh
Q 024694          196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIVV  237 (264)
Q Consensus       196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~ii  237 (264)
                      +.+.+.+|+|-.|..-|.++++|++-+..+ |++.||...+..
T Consensus        19 e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~   61 (103)
T cd01277          19 EDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELIL   61 (103)
T ss_pred             eCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHH
Confidence            467889999999999999999999999765 999988765543

This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.

>PRK15350 type III secretion system protein SsaS; Provisional

Probab=86.98  E-value=13  Score=29.16  Aligned_cols=79  Identities=11%  Similarity=0.183  Sum_probs=51.9

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024694           56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWF  135 (264)
Q Consensus        56 ~~l~~~FltGLlvLLPi~iTi~Il~w~~~~vd~~~~pi~~~lg~~ipGlgll~~llliflvG~l~~~~lg~~l~~~~E~~  135 (264)
                      ...++.+...+.+.+|+.+.-.++.-+++++....    . +  +-.-+.|+-=++.++++=++...|.++.+.++.+++
T Consensus         8 ~l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~T----Q-I--QEqTLsFvPKliav~~~l~~~gpWm~~~l~~ft~~i   80 (88)
T PRK15350          8 QFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALT----Q-I--QDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566688899999999888877776666543321    1 1  111234443344445555566678889999999999


Q ss_pred             hchhce
Q 024694          136 IKRMPF  141 (264)
Q Consensus       136 l~rIPl  141 (264)
                      +.+||-
T Consensus        81 f~~i~~   86 (88)
T PRK15350         81 MLRIGE   86 (88)
T ss_pred             HHhhhh
Confidence            999983

>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated

Probab=85.68  E-value=16  Score=28.76  Aligned_cols=80  Identities=10%  Similarity=0.225  Sum_probs=52.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024694           55 RSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEW  134 (264)
Q Consensus        55 r~~l~~~FltGLlvLLPi~iTi~Il~w~~~~vd~~~~pi~~~lg~~ipGlgll~~llliflvG~l~~~~lg~~l~~~~E~  134 (264)
                      -...++.+...+.+-.|+.+.-.++.-+++++....    . +  +-.-+.|+-=++.++++=++...|.++.+.++.++
T Consensus         7 ~~l~~~al~~~l~ls~P~l~~alvVGlvIsi~QA~T----Q-I--qEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~   79 (89)
T PRK05700          7 MDLFREAMKVALMLAAPLLLVALVVGLVVSIFQAAT----Q-I--NEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRT   79 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-H--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566688899999999888877776665543321    1 1  11123444334444455556668899999999999


Q ss_pred             hhchhce
Q 024694          135 FIKRMPF  141 (264)
Q Consensus       135 ~l~rIPl  141 (264)
                      ++.++|-
T Consensus        80 if~~i~~   86 (89)
T PRK05700         80 LFSNIPT   86 (89)
T ss_pred             HHHHHHh
Confidence            9999985

>TIGR01402 fliQ flagellar biosynthetic protein FliQ

Probab=84.92  E-value=17  Score=28.52  Aligned_cols=79  Identities=14%  Similarity=0.264  Sum_probs=52.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024694           56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWF  135 (264)
Q Consensus        56 ~~l~~~FltGLlvLLPi~iTi~Il~w~~~~vd~~~~pi~~~lg~~ipGlgll~~llliflvG~l~~~~lg~~l~~~~E~~  135 (264)
                      ...++.+...+.+..|+.+.-.++.-+++.+....    . +  +-.-+.|+-=++.++++-++...|.++.+.++.+++
T Consensus         8 ~l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~T----Q-I--qEqTLsFvPKliav~~~l~~~gpWm~~~l~~f~~~~   80 (88)
T TIGR01402         8 DLGREAIWLTLLLSAPVLLVALVVGLVISIFQAAT----Q-I--QEQTLSFIPKIIAILLALALLGPWMLTKLLDFTREI   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-H--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566688899999999888777776655543321    1 1  111234444444455555566688899999999999


Q ss_pred             hchhce
Q 024694          136 IKRMPF  141 (264)
Q Consensus       136 l~rIPl  141 (264)
                      +.++|-
T Consensus        81 f~~i~~   86 (88)
T TIGR01402        81 FQRIPQ   86 (88)
T ss_pred             HHHhhh
Confidence            999985

This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.

>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=84.05  E-value=19  Score=28.30  Aligned_cols=80  Identities=14%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024694           55 RSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEW  134 (264)
Q Consensus        55 r~~l~~~FltGLlvLLPi~iTi~Il~w~~~~vd~~~~pi~~~lg~~ipGlgll~~llliflvG~l~~~~lg~~l~~~~E~  134 (264)
                      -...++.+...+.+.+|+.+.-.++.-+++.+....    . +  +-.-+.++-=++.++++=++...|..+.+.++.++
T Consensus         7 ~~l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~T----Q-I--qEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~   79 (88)
T PRK06010          7 LDIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALT----Q-I--QEMTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLL   79 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-H--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566688899999999888877776665543321    1 1  11113333333344444455567888889999999


Q ss_pred             hhchhce
Q 024694          135 FIKRMPF  141 (264)
Q Consensus       135 ~l~rIPl  141 (264)
                      ++.+||-
T Consensus        80 if~~i~~   86 (88)
T PRK06010         80 IYSRIAG   86 (88)
T ss_pred             HHHhhcc
Confidence            9999983

>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases

Probab=82.84  E-value=2.4  Score=34.14  Aligned_cols=44  Identities=14%  Similarity=0.125  Sum_probs=36.1

Q ss_pred             CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHHhhc
Q 024694          196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIVVSG  239 (264)
Q Consensus       196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~iiS~  239 (264)
                      +++.+.+|+|-.|.+.|.++++|++.+..+ |++-||...+.-..
T Consensus        19 e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~   63 (126)
T cd01275          19 RTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLV   63 (126)
T ss_pred             eCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHH
Confidence            467889999999988999999999999765 89988877654443

Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.

>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=81.84  E-value=23  Score=27.78  Aligned_cols=80  Identities=15%  Similarity=0.187  Sum_probs=52.3

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024694           55 RSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEW  134 (264)
Q Consensus        55 r~~l~~~FltGLlvLLPi~iTi~Il~w~~~~vd~~~~pi~~~lg~~ipGlgll~~llliflvG~l~~~~lg~~l~~~~E~  134 (264)
                      -...++.+...+.+-+|+.+.-.++.-+++.+....    . +  +-.-+.++-=++.++++=++...|.++.+.++.++
T Consensus         7 i~~~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~T----Q-I--QEqTLsFvPKliav~~~l~~~~~wm~~~l~~ft~~   79 (88)
T PRK12781          7 LELVRAAIWTIIVASGPAVGAAMLVGIAIALLQALT----Q-I--QEVTLTFVPKIVVILIVMAVTGSFVGAQIYAFTEM   79 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666788889999999888777776655543321    1 1  11123443334444555556668888999999999


Q ss_pred             hhchhce
Q 024694          135 FIKRMPF  141 (264)
Q Consensus       135 ~l~rIPl  141 (264)
                      ++.+||-
T Consensus        80 if~~i~~   86 (88)
T PRK12781         80 VYGRIES   86 (88)
T ss_pred             HHHhhcc
Confidence            9999983

>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides

Probab=81.81  E-value=2.4  Score=31.14  Aligned_cols=42  Identities=14%  Similarity=0.224  Sum_probs=33.8

Q ss_pred             CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHHh
Q 024694          196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIVV  237 (264)
Q Consensus       196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~ii  237 (264)
                      +++.+.+|+|-.|...|-++++|++-+..+ |++.|+..++..
T Consensus         3 e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~   45 (86)
T cd00468           3 DDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVI   45 (86)
T ss_pred             ecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHH
Confidence            457789999999988999999999988664 898876655443

On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.

>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=81.47  E-value=8.3  Score=37.83  Aligned_cols=23  Identities=9%  Similarity=0.134  Sum_probs=18.4

Q ss_pred             HHHHHHHHhhchhceehhHHHHH
Q 024694          127 SVLSLGEWFIKRMPFVRHIYNAS  149 (264)
Q Consensus       127 ~l~~~~E~~l~rIPlVk~IY~~i  149 (264)
                      +.-.+.|+++-|+|+++.+....
T Consensus       239 ~~r~~~~~~llrlP~~g~l~~~~  261 (397)
T COG1459         239 AGRRRLDRLLLRLPLFGKLVRKY  261 (397)
T ss_pred             HHHHHHHhHHhcCCcHHHHHHHH
Confidence            44567899999999999987643

>COG1684 FliR Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=80.64  E-value=22  Score=33.09  Aligned_cols=45  Identities=11%  Similarity=0.148  Sum_probs=38.7

Q ss_pred             ChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024694           46 GRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFF   90 (264)
Q Consensus        46 ~~~~~~~~lr~~l~~~FltGLlvLLPi~iTi~Il~w~~~~vd~~~   90 (264)
                      ..+++..-+-+++...|..|+..-+|++....+++-.+..+++..
T Consensus       163 ~~~~~~~~l~~~l~~~F~~~l~iAlPii~~lLlvnlalGlv~R~~  207 (258)
T COG1684         163 LNDNAFLLLAKALSAIFLIGLRLALPIIALLLLVNLALGLLNRLA  207 (258)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            345778888889999999999999999999999998888887763

>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family

Probab=80.51  E-value=24  Score=27.21  Aligned_cols=77  Identities=16%  Similarity=0.353  Sum_probs=48.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024694           57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI  136 (264)
Q Consensus        57 ~l~~~FltGLlvLLPi~iTi~Il~w~~~~vd~~~~pi~~~lg~~ipGlgll~~llliflvG~l~~~~lg~~l~~~~E~~l  136 (264)
                      ..++.+...+.+-+|+.+.-.++.-+++++....    . +  +-.-+.|+-=++.++++=++...|..+.+.++.++++
T Consensus         5 ~~~~al~~~l~~s~P~L~~alvVGLvIsi~QA~T----Q-I--qEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if   77 (81)
T TIGR01403         5 LTNQALLLVLILSLPPVLVAAIVGLLVSLLQALT----Q-L--QDQTLPFAIKLIAVFITLMLTAGWLGAEILNFANQIF   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-H--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566688899999999888887776665543321    1 1  1111333333333344444555788888899999999


Q ss_pred             chhc
Q 024694          137 KRMP  140 (264)
Q Consensus       137 ~rIP  140 (264)
                      .+||
T Consensus        78 ~~i~   81 (81)
T TIGR01403        78 TMIP   81 (81)
T ss_pred             hhCC
Confidence            9887

This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 31/230 (13%), Positives = 58/230 (25%), Gaps = 50/230 (21%)

Query: 10  MASRERDRDRELLIPVAD-----------SGDESSKPSSSSSSSHHAGRETFSK------ 52
           +  +  +    +L  +               D SS       S     R           
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 53  ------VVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGF 106
                 V  + A   F   C IL        +T  F    D   +     + +D   +  
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKIL--------LTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 107 ITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNT-QAF 165
                      +    +L      L    +   P    I      I+ +I     T   +
Sbjct: 299 TPDEV----KSLL-LKYLDCRPQDLPREVLTTNPRRLSI------IAESIRDGLATWDNW 347

Query: 166 KEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCC----VYVPTNHLYI 211
           K V   +   I E +   +  +   + +   + L       ++PT  L +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00