Citrus Sinensis ID: 024720
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 263 | ||||||
| 224132546 | 219 | predicted protein [Populus trichocarpa] | 0.817 | 0.981 | 0.805 | 1e-95 | |
| 224134933 | 220 | predicted protein [Populus trichocarpa] | 0.821 | 0.981 | 0.788 | 7e-94 | |
| 356498908 | 251 | PREDICTED: uncharacterized protein LOC10 | 0.920 | 0.964 | 0.711 | 5e-93 | |
| 255557184 | 246 | conserved hypothetical protein [Ricinus | 0.916 | 0.979 | 0.734 | 1e-91 | |
| 357490387 | 254 | hypothetical protein MTR_5g068640 [Medic | 0.901 | 0.933 | 0.684 | 1e-91 | |
| 297742711 | 262 | unnamed protein product [Vitis vinifera] | 0.954 | 0.958 | 0.658 | 2e-90 | |
| 225463805 | 239 | PREDICTED: uncharacterized protein LOC10 | 0.901 | 0.991 | 0.689 | 2e-90 | |
| 356551825 | 233 | PREDICTED: uncharacterized protein LOC10 | 0.813 | 0.918 | 0.758 | 1e-89 | |
| 297742712 | 248 | unnamed protein product [Vitis vinifera] | 0.908 | 0.963 | 0.679 | 1e-88 | |
| 225463803 | 244 | PREDICTED: uncharacterized protein LOC10 | 0.897 | 0.967 | 0.683 | 1e-88 |
| >gi|224132546|ref|XP_002321345.1| predicted protein [Populus trichocarpa] gi|224151094|ref|XP_002337058.1| predicted protein [Populus trichocarpa] gi|222837933|gb|EEE76298.1| predicted protein [Populus trichocarpa] gi|222868341|gb|EEF05472.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/216 (80%), Positives = 189/216 (87%), Gaps = 1/216 (0%)
Query: 4 QQLLDYILVPFGLLIMAAYHVWLLYRIVKHPTKTVIGVNAINRRFWVQAMMEDASKNGVL 63
+ +LDY LVP GL+ M AYH+WLLYRI+KHPTKTVIG+NAINRRFWV+AMMED SKNGVL
Sbjct: 3 RAILDYTLVPLGLVTMVAYHIWLLYRIMKHPTKTVIGINAINRRFWVRAMMEDVSKNGVL 62
Query: 64 AVQTLRNNIMASTLLASTAIMLSSLIAILMTSSDGDRSTW-FTFGDRSDFFYSIKFFFIL 122
AVQTLRNNIMAST+LASTAIMLSSLIA+LMTS GD+S F FGDRS+ SIKFF IL
Sbjct: 63 AVQTLRNNIMASTVLASTAIMLSSLIAVLMTSGSGDKSARNFVFGDRSELGLSIKFFSIL 122
Query: 123 VCFLVAFLLNVQSIRYYSHAGILINVPFKKMSENVHHHQLTAEFVARTVNRGSYFWSLGL 182
VCFLVAFLLNVQSIRYYSHA ILINVPFKKM N H L+ E+VAR+VNRGSYFWSLGL
Sbjct: 123 VCFLVAFLLNVQSIRYYSHASILINVPFKKMCPNHRHQHLSTEYVARSVNRGSYFWSLGL 182
Query: 183 RAFYFSFPLFLWIFGPIPMFLCCVVLVFLLYFLDVT 218
RAFYFSFPLFLWIFGPIPMFL CV LV +LYFLDVT
Sbjct: 183 RAFYFSFPLFLWIFGPIPMFLSCVFLVSMLYFLDVT 218
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134933|ref|XP_002321941.1| predicted protein [Populus trichocarpa] gi|222868937|gb|EEF06068.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356498908|ref|XP_003518289.1| PREDICTED: uncharacterized protein LOC100790696 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255557184|ref|XP_002519623.1| conserved hypothetical protein [Ricinus communis] gi|223541213|gb|EEF42768.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357490387|ref|XP_003615481.1| hypothetical protein MTR_5g068640 [Medicago truncatula] gi|355516816|gb|AES98439.1| hypothetical protein MTR_5g068640 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297742711|emb|CBI35345.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225463805|ref|XP_002268419.1| PREDICTED: uncharacterized protein LOC100242299 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356551825|ref|XP_003544274.1| PREDICTED: uncharacterized protein LOC100806179 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297742712|emb|CBI35346.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225463803|ref|XP_002270575.1| PREDICTED: uncharacterized protein LOC100250773 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 263 | ||||||
| TAIR|locus:2153909 | 248 | AT5G24600 [Arabidopsis thalian | 0.756 | 0.802 | 0.721 | 1.7e-75 | |
| TAIR|locus:505006357 | 244 | AT3G18215 "AT3G18215" [Arabido | 0.741 | 0.799 | 0.561 | 2.3e-55 | |
| TAIR|locus:2128151 | 239 | AT4G31330 "AT4G31330" [Arabido | 0.730 | 0.803 | 0.428 | 2.7e-36 | |
| TAIR|locus:2161348 | 248 | AT5G46060 "AT5G46060" [Arabido | 0.718 | 0.762 | 0.418 | 4.6e-34 | |
| TAIR|locus:2184590 | 246 | AT5G24790 "AT5G24790" [Arabido | 0.726 | 0.776 | 0.382 | 3.2e-33 | |
| TAIR|locus:2142549 | 246 | AT5G10580 "AT5G10580" [Arabido | 0.749 | 0.800 | 0.383 | 5.2e-33 | |
| DICTYBASE|DDB_G0275599 | 255 | DDB_G0275599 "DUF599 family pr | 0.718 | 0.741 | 0.361 | 5.9e-25 | |
| TAIR|locus:2156476 | 239 | AT5G43180 "AT5G43180" [Arabido | 0.726 | 0.799 | 0.312 | 3.1e-19 |
| TAIR|locus:2153909 AT5G24600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 148/205 (72%), Positives = 170/205 (82%)
Query: 3 EQQLLDYILVPFGLLIMAAYHVWLLYRIVKHPTKTVIGVNAINRRFWVQAMMEDASKNGV 62
+++ LDY LVP GL +M YH+WLLYRI+ P+ TV+G+NA NRR WVQAMMED+SKNGV
Sbjct: 2 KREYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSSKNGV 61
Query: 63 LAVQTLRNNIMASTLLASTAIMLSSLIAILMTSSDGDRSTWFTFGDRSDFFYSIKFFFIL 122
LAVQTLRNNIMASTLLASTAIML SLIA+LMTS+ G+RS WF FGD+SD +S+KFF IL
Sbjct: 62 LAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGERSVWFVFGDKSDRAFSLKFFAIL 121
Query: 123 VCFLVAFLLNVQSIRYYSHAGILINVPFKKM---SENVHHH---QLTAEFVARTVNRGSY 176
VCFLVAFLLNVQSIRYYSHA ILINVPFK++ S + + ++VA TVNRGSY
Sbjct: 122 VCFLVAFLLNVQSIRYYSHASILINVPFKQLMAVSSGGRGNGSLMINQDYVAATVNRGSY 181
Query: 177 FWSLGLRAFYFSFPLFLWIFGPIPM 201
FWSLGLRAFYFS PLFLWIFGPIPM
Sbjct: 182 FWSLGLRAFYFSSPLFLWIFGPIPM 206
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| TAIR|locus:505006357 AT3G18215 "AT3G18215" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2128151 AT4G31330 "AT4G31330" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2161348 AT5G46060 "AT5G46060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2184590 AT5G24790 "AT5G24790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2142549 AT5G10580 "AT5G10580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0275599 DDB_G0275599 "DUF599 family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| TAIR|locus:2156476 AT5G43180 "AT5G43180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 263 | |||
| pfam04654 | 216 | pfam04654, DUF599, Protein of unknown function, DU | 2e-68 | |
| COG3821 | 234 | COG3821, COG3821, Predicted membrane protein [Func | 9e-05 |
| >gnl|CDD|147016 pfam04654, DUF599, Protein of unknown function, DUF599 | Back alignment and domain information |
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Score = 210 bits (537), Expect = 2e-68
Identities = 81/216 (37%), Positives = 115/216 (53%), Gaps = 11/216 (5%)
Query: 9 YILVPFGLLIMAAYHVWLLYRIVKHPTKTVIGVNAINRRFWVQAMMEDASKNGVLAVQTL 68
+ VP LL+ YH +L +R + PT + G+ A RR W++ M+ + VL VQ L
Sbjct: 1 LLAVPLFLLVWVGYHWFLEHRAKRRPT--LSGIMARYRRAWMRRMLTR--EVRVLDVQIL 56
Query: 69 RNNIMASTLLASTAIMLSSLIAILMTSSDGDRSTWF----TFGDR-SDFFYSIKFFFILV 123
RN IM +T ASTAI+L + IA L+ S+D R FG S + +K +LV
Sbjct: 57 RNLIMGTTFFASTAILLIAGIAALLGSTD--RLIGVLGDLPFGAHTSRAAFELKLLLLLV 114
Query: 124 CFLVAFLLNVQSIRYYSHAGILINVPFKKMSENVHHHQLTAEFVARTVNRGSYFWSLGLR 183
FL AF SIR +++ ILI + AE+ AR +NR + +++GLR
Sbjct: 115 IFLYAFFKFTWSIRQFNYCSILIGAAPMDPEGADEDAEAYAEYAARVLNRAANSFNVGLR 174
Query: 184 AFYFSFPLFLWIFGPIPMFLCCVVLVFLLYFLDVTF 219
A+YF+ L LW FGPIP FL +V+V +LY D
Sbjct: 175 AYYFALALLLWFFGPIPFFLATLVVVAVLYRRDFRS 210
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This family includes several uncharacterized proteins. Length = 216 |
| >gnl|CDD|226342 COG3821, COG3821, Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 263 | |||
| PF04654 | 216 | DUF599: Protein of unknown function, DUF599; Inter | 100.0 | |
| COG3821 | 234 | Predicted membrane protein [Function unknown] | 100.0 |
| >PF04654 DUF599: Protein of unknown function, DUF599; InterPro: IPR006747 This family includes several uncharacterised proteins | Back alignment and domain information |
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Probab=100.00 E-value=8.6e-68 Score=469.86 Aligned_cols=210 Identities=39% Similarity=0.651 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhCCCCCHhhHHHhhHHHHHHHHHhhccccchhHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024720 9 YILVPFGLLIMAAYHVWLLYRIVKHPTKTVIGVNAINRRFWVQAMMEDASKNGVLAVQTLRNNIMASTLLASTAIMLSSL 88 (263)
Q Consensus 9 ~iav~~~l~~~~gYh~~l~~~~~~~p~~t~~g~~~~~R~~Wm~~m~~r~~r~~il~vqtLrn~i~sstFfASTsilli~G 88 (263)
++++|+|++||+|||+|++++.+++| |++|+|+++|++||++|++||+ +|+|+|+|||++|++||||||||++++|
T Consensus 1 ~~av~~~l~~~~gY~~~l~~~~~~~p--t~~~~~~~~R~~W~~~m~~r~~--~ildvq~Lrn~~~~~tffASTailli~g 76 (216)
T PF04654_consen 1 LIAVPLFLLCWVGYHLYLERRVRRRP--TLSGIMNQYRRAWMRQMMDRKN--RILDVQTLRNLIMSATFFASTAILLIGG 76 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhccCCC--hHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999 8999999999999999998864 5999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcc--cccccCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccccchhhHHH
Q 024720 89 IAILMTSSDGDRST--WFTFGDR-SDFFYSIKFFFILVCFLVAFLLNVQSIRYYSHAGILINVPFKKMSENVHHHQLTAE 165 (263)
Q Consensus 89 l~all~s~~~~~~~--~~~~g~~-~~~~~~lKll~Ll~if~~AFf~F~wS~R~~n~~~~Lig~p~~~~~~~~~~~~~~~~ 165 (263)
++++++++|+.... +++++.+ ++..+|+|++++++||++|||||+||+||||||+||||+||++++.++++++..++
T Consensus 77 ~~all~~~~~~~~~~~~~~~~~~~s~~~~~lK~l~ll~~f~~aFf~f~~s~R~~n~~~~li~~~p~~~~~~~~~~~~~~~ 156 (216)
T PF04654_consen 77 LLALLGSTDKLSSVASDLPFGGSASRFLFELKLLLLLVIFLYAFFKFTWSIRQYNHASFLIGAPPEPPEGDEAEREAFAE 156 (216)
T ss_pred HHHHHcCcHHHhhHHhhCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHH
Confidence 99999999998754 8899888 66899999999999999999999999999999999999988654433566789999
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHhccccc
Q 024720 166 FVARTVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLCCVVLVFLLYFLDVTFTFQ 222 (263)
Q Consensus 166 ~va~~l~ra~~~~n~GlRayYfalall~W~~gP~~l~~~tv~vV~vLy~rdf~S~~~ 222 (263)
++++++++|+++||.|+|+|||++|+++|++||++++++|+++|.+||+|||.|+.+
T Consensus 157 ~~a~~~~~a~~~fn~GlRa~yfal~~l~W~~gP~~~~~~t~~vv~~L~~rdf~S~~~ 213 (216)
T PF04654_consen 157 YAARVLNRAGNFFNRGLRAYYFALPLLLWFFGPWALIAATVLVVAVLYRRDFRSRAR 213 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchHh
Confidence 999999999999999999999999999999999999999999999999999999987
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| >COG3821 Predicted membrane protein [Function unknown] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00