Citrus Sinensis ID: 024735

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MLLSLSQAAVPTARNCSINLKLSSSNPPLTSDSHKKSKFIVKTIHPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDFSSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHcHcccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mllslsqaavptarncsinlklsssnppltsdshkkskfIVKTIHPRRRALSLTLAkadgsvdsnnsaaatsnltsrsfqdetvsvgqgnvplegviqfekpdfssrinKWGRVALLAGGDVLALLLFSAIgrfnhgfsvfdfdtlrtadpfiaGWFLSAYflggyaddgrgmnGLSKAVVAATKSWAAGVPLGLIIRAvtsghlppyTFILVTMGTTAVLLIGWRALLFsflpddkskkndvyrrgnPFELFELLTSLVRRW
Flexible Loop (DISEMBL)
MLLSLSQAAVptarncsinlklsssnppltsdshkkskfivktihprrrALSLTlakadgsvdsnNSAAatsnltsrsfqdetvSVGQGNVPLEGVIQFEKPDFSSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSflpddkskkndvyrrgnpfELFELLTSLVRRW
Low Complexity Region (SEG)
MLLSLSQAAVPTARNCSINLKLSSSNPPLTSDSHKKSKFIVKTIHPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDFSSRINKWGRvallaggdvlalllFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW
Disordered region (IsUnstruct)
***************************************IVKTI*********************************************NVPLEGVIQFEKPDFSSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDDK**KNDVYRRGNPFELFELLTSLV***
Disordered Region (DISOPRED)
****************************************************************************************************************RVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFS******************FELFELLTSLVRRW
Disordered Region (DISEMBL)
**********PTARNCSINLKLSSS**********KSKFIVKTIHPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDFSSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW
Disordered Region (DISPRO)
**********PTARNCSINLKLSSSNPPLTSD***KS****************************************SFQDETVSVGQGNVPLEGVIQFEKPDFSSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLSLSQAAVPTARNCSINLKLSSSNPPLTSDSHKKSKFIVKTIHPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDFSSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
449450308	260	PREDICTED: uncharacterized protein LOC10	0.954	0.965	0.664	4e-91
255537970	276	conserved hypothetical protein [Ricinus	0.984	0.938	0.652	1e-89
225458910	260	PREDICTED: uncharacterized protein LOC10	0.821	0.830	0.754	1e-87
18401414	258	uncharacterized protein [Arabidopsis tha	0.821	0.837	0.696	4e-81
224067166	262	predicted protein [Populus trichocarpa]	0.969	0.973	0.650	2e-79
297852236	259	predicted protein [Arabidopsis lyrata su	0.817	0.830	0.680	8e-78
7767678	261	F27F5.3 [Arabidopsis thaliana]	0.813	0.819	0.675	1e-76
388521139	267	unknown [Lotus japonicus]	0.870	0.857	0.627	8e-76
359806854	268	uncharacterized protein LOC100790514 [Gl	0.908	0.891	0.613	8e-75
388512349	250	unknown [Medicago truncatula]	0.901	0.948	0.631	3e-72

>gi|449450308|ref|XP_004142905.1| PREDICTED: uncharacterized protein LOC101212562 [Cucumis sativus] gi|449529905|ref|XP_004171938.1| PREDICTED: uncharacterized protein LOC101228828 [Cucumis sativus]

 Score =  340 bits (872), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 180/271 (66%), Positives = 207/271 (76%), Gaps = 20/271 (7%)

Query: 2   LLSLSQ--AAVPTARNCSIN----LKLSSSNPPLTSDSHKKSKFIVKTIHPRR---RALS 52
           +L LSQ  A V  AR  S++    LK S+ NP       ++SKFI     PRR   +  +
Sbjct: 1   MLPLSQTPAGVLPARRLSLSTIPSLKFSNPNP------FRRSKFI-----PRRNPTKPFN 49

Query: 53  LTLAKADGSVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDFSSRINKWG 112
           +TL+KA+G+VDS   A + S        D+TV VG  NVPLEGVIQF+KP+ SSR+ KWG
Sbjct: 50  ITLSKAEGTVDSTKQALSNSPTPPPFPNDQTVFVGDENVPLEGVIQFDKPNTSSRLTKWG 109

Query: 113 RVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRG 172
           RVA LAGGDVLALLLFS+IGRF+HG  VFDF+TLRTADPFIAGWFLSAYFLGGY DDGRG
Sbjct: 110 RVAFLAGGDVLALLLFSSIGRFSHGLPVFDFETLRTADPFIAGWFLSAYFLGGYGDDGRG 169

Query: 173 MNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSF 232
           +NG SKAVVAATKSWA G+PLGL++RA TSGHLPPY FI VTMG+TAVLLIGWRA+L+  
Sbjct: 170 INGYSKAVVAATKSWALGIPLGLLVRAATSGHLPPYNFIGVTMGSTAVLLIGWRAILYKV 229

Query: 233 LPDDKSKKNDVYRRGNPFELFELLTSLVRRW 263
            P   SKKNDVYRRGNPFELFELLTSLVRRW
Sbjct: 230 FPVSNSKKNDVYRRGNPFELFELLTSLVRRW 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537970|ref|XP_002510050.1| conserved hypothetical protein [Ricinus communis] gi|223550751|gb|EEF52237.1| conserved hypothetical protein [Ricinus communis]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/279 (65%), Positives = 215/279 (77%), Gaps = 20/279 (7%)

Query: 1   MLLSLSQAAVPTARNCSINL----KLSSSNPPLTSDSHKKS---KFIVKTIHPRRRAL-- 51
           +L+S       +AR C+       K +   PPL   ++  +   KFI K    +R++   
Sbjct: 2   LLVSQGAGGGLSARRCTCTHISPPKFAHKKPPLFFSNNATAGGPKFISK----KRQSFYH 57

Query: 52  SLTLAKA-DGSVDSN-----NSAAATSNLTSRSFQ-DETVSVGQGNVPLEGVIQFEKPDF 104
            LTLAKA DGS DS        + +T+N    SF+ DETV VGQ NVPLEGVIQFEKP  
Sbjct: 58  HLTLAKAADGSSDSPTSSTTKQSPSTNNSPPPSFRTDETVFVGQENVPLEGVIQFEKPSS 117

Query: 105 SSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLG 164
           SSR++KWGRVAL++GGDVLALLLFSAIGRF+HG+SVFDF+TLRTADPF+AGWFL AYFLG
Sbjct: 118 SSRLDKWGRVALISGGDVLALLLFSAIGRFSHGYSVFDFETLRTADPFVAGWFLGAYFLG 177

Query: 165 GYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIG 224
           GY +DGRGMNG SKAV+AA KSWA G+PLGLIIRAVTSGH+PPYTF+LVTMG+TAVLL+G
Sbjct: 178 GYGEDGRGMNGPSKAVIAAVKSWAVGIPLGLIIRAVTSGHIPPYTFVLVTMGSTAVLLVG 237

Query: 225 WRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW 263
           WRALL S LP ++SKKNDVYRRG+PFELFELLTSLVRRW
Sbjct: 238 WRALLSSILPTNESKKNDVYRRGSPFELFELLTSLVRRW 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458910|ref|XP_002285461.1| PREDICTED: uncharacterized protein LOC100257450 [Vitis vinifera] gi|302142160|emb|CBI19363.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 166/220 (75%), Positives = 185/220 (84%), Gaps = 4/220 (1%)

Query: 48  RRALSLTLAKADGSVDSNNSAAATSNLTSRSF---QDETVSVGQGNVPLEGVIQFEKPDF 104
           RR L +TLAKADG +DS  +A    + ++ S     D TV VGQ +VPLEGVIQFEKP+ 
Sbjct: 41  RRTLHITLAKADGGLDSTPAAKQIPSDSNPSLPLNNDPTVFVGQESVPLEGVIQFEKPNA 100

Query: 105 S-SRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFL 163
           + SR+ KWGRVALLAGGDVLAL+LFSAIGRF+HGFSV DF+TLRTADPFIAGW LSAYFL
Sbjct: 101 TASRLEKWGRVALLAGGDVLALILFSAIGRFSHGFSVIDFETLRTADPFIAGWTLSAYFL 160

Query: 164 GGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLI 223
           GGY DDGRGMNGLSKAV+AA KSWA G+PLGLIIRA TSGH+P   FILVTMG+T  LLI
Sbjct: 161 GGYGDDGRGMNGLSKAVLAAAKSWALGIPLGLIIRAATSGHIPSSNFILVTMGSTGFLLI 220

Query: 224 GWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW 263
           GWRALLFS  P+DKSKKNDVYRRG+PFELFELLTSLVRRW
Sbjct: 221 GWRALLFSIFPNDKSKKNDVYRRGSPFELFELLTSLVRRW 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401414|ref|NP_564492.1| uncharacterized protein [Arabidopsis thaliana] gi|8656004|gb|AAF78277.1|AC020576_21 Contains similarity to hypothetical protein F27F5.3 gi|7767678 from Arabidopsis thaliana F27F5 gb|AC007915 and contains a terpene synthase PF|01397 domain [Arabidopsis thaliana] gi|13878107|gb|AAK44131.1|AF370316_1 unknown protein [Arabidopsis thaliana] gi|17104773|gb|AAL34275.1| unknown protein [Arabidopsis thaliana] gi|332193943|gb|AEE32064.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 154/221 (69%), Positives = 177/221 (80%), Gaps = 5/221 (2%)

Query: 45  HPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDF 104
           H  R  + L L+  DGSV+S  S +A+   +S    DETV VGQ NVPLEGVIQF+KP  
Sbjct: 41  HRSRPRVVLALSNPDGSVNSKPSTSASQIPSS---GDETVFVGQDNVPLEGVIQFDKPSS 97

Query: 105 --SSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYF 162
             SS I KWGRVALLAGGDVLALL+FSAIGRF+HGF VF  DTL TADPFIAGWFLSAYF
Sbjct: 98  TSSSNITKWGRVALLAGGDVLALLIFSAIGRFSHGFPVFSLDTLHTADPFIAGWFLSAYF 157

Query: 163 LGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLL 222
           LGGYA++GRGM G SKAVVAA KSW  G PLG+IIR+ +SGH+P Y+F+LVTMG+TAVLL
Sbjct: 158 LGGYAEEGRGMKGKSKAVVAAAKSWIVGTPLGIIIRSASSGHIPAYSFVLVTMGSTAVLL 217

Query: 223 IGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW 263
           IGWRALLFS LP +  KK+D YR+G+ FELFELLTSL+RRW
Sbjct: 218 IGWRALLFSVLPTESKKKDDTYRKGSAFELFELLTSLIRRW 258

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067166|ref|XP_002302388.1| predicted protein [Populus trichocarpa] gi|222844114|gb|EEE81661.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 175/269 (65%), Positives = 199/269 (73%), Gaps = 14/269 (5%)

Query: 2   LLSLSQA---AVPTARNCSINLKLSSSNPPLTSDSHKKSKFIVKTIHPRRRALSLTLAKA 58
           +L LSQA   A+   R     LK    NPPL  +S  K KFI +    ++    LTLAK 
Sbjct: 1   MLLLSQAPRGALSAKRRTP--LKFVPQNPPLFLNS-TKPKFISR----KQSTFPLTLAKP 53

Query: 59  DGSVDS----NNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDFSSRINKWGRV 114
           +G +DS      S +  +   S    ++ V VGQ +VPLEGVIQFEKP  S R+ KWGRV
Sbjct: 54  EGGLDSTSATKQSLSTNNPPPSPPTPNDIVFVGQEDVPLEGVIQFEKPTSSGRLEKWGRV 113

Query: 115 ALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMN 174
           ALLAGGDVLALLLFSAIGRF HGFSVFDF+TLRTADPFIAGWFL AYFLGGY +DGRGMN
Sbjct: 114 ALLAGGDVLALLLFSAIGRFGHGFSVFDFETLRTADPFIAGWFLGAYFLGGYGEDGRGMN 173

Query: 175 GLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLP 234
           GLSKA +AA KSWA G+PLGLIIRA +SGH+PP TF LVTMG+T VLLIGWR LL   L 
Sbjct: 174 GLSKAAIAAAKSWATGIPLGLIIRAASSGHVPPSTFTLVTMGSTGVLLIGWRMLLSRVLS 233

Query: 235 DDKSKKNDVYRRGNPFELFELLTSLVRRW 263
           +D+SKKNDVYRRG+PFELFELLTSLVRRW
Sbjct: 234 NDESKKNDVYRRGSPFELFELLTSLVRRW 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852236|ref|XP_002893999.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297339841|gb|EFH70258.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 151/222 (68%), Positives = 176/222 (79%), Gaps = 7/222 (3%)

Query: 46  PRRRA-LSLTLAKADGSVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDF 104
           PRRR  + L L+  DGSV S  S + +   +S    D+TV VGQ NVPLEGVIQF+KP  
Sbjct: 41  PRRRQRVVLALSNPDGSVKSKPSTSVSQIPSS---GDDTVFVGQENVPLEGVIQFDKPSS 97

Query: 105 SS---RINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAY 161
           S+    I KWGRVALLAGGDVLALL+FSAIGRF+HGF VF  +TL TADPFIAGWFLSAY
Sbjct: 98  STSSSNITKWGRVALLAGGDVLALLIFSAIGRFSHGFPVFSIETLHTADPFIAGWFLSAY 157

Query: 162 FLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVL 221
           FLGGYA++GRGM G SKAVVAA KSW  G PLG+IIR+ +SGH+P  +F+LVTMG+TAVL
Sbjct: 158 FLGGYAEEGRGMKGRSKAVVAAAKSWIVGAPLGIIIRSASSGHIPASSFVLVTMGSTAVL 217

Query: 222 LIGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW 263
           LIGWRALLFS LP +  KK+D YR+G+ FELFELLTSL+RRW
Sbjct: 218 LIGWRALLFSVLPTESKKKDDTYRKGSAFELFELLTSLIRRW 259

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7767678|gb|AAF69175.1|AC007915_27 F27F5.3 [Arabidopsis thaliana]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/219 (67%), Positives = 171/219 (78%), Gaps = 5/219 (2%)

Query: 45  HPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDF 104
           H  R  + L L+  DGSV+S  S +A+   +S    DETV VGQ NVPLEGVIQF+KP  
Sbjct: 41  HRSRPRVVLALSNPDGSVNSKPSTSASQIPSS---GDETVFVGQDNVPLEGVIQFDKPSS 97

Query: 105 --SSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYF 162
             SS I KWGRVALLAGGDVLALL+FSAIGRF+HGF VF  DTL TADPFIAGWFLSAYF
Sbjct: 98  TSSSNITKWGRVALLAGGDVLALLIFSAIGRFSHGFPVFSLDTLHTADPFIAGWFLSAYF 157

Query: 163 LGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLL 222
           LGGYA++GRGM G SKAVVAA KSW  G PLG+IIR+ +SGH+P Y+F+LVTMG+TAVLL
Sbjct: 158 LGGYAEEGRGMKGKSKAVVAAAKSWIVGTPLGIIIRSASSGHIPAYSFVLVTMGSTAVLL 217

Query: 223 IGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVR 261
           IGWRALLFS LP +  KK+D YR+G+ FELFE L  L +
Sbjct: 218 IGWRALLFSVLPTESKKKDDTYRKGSAFELFEYLPCLFK 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521139|gb|AFK48631.1| unknown [Lotus japonicus]

 Score =  289 bits (740), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 148/236 (62%), Positives = 182/236 (77%), Gaps = 7/236 (2%)

Query: 33  SHKKSKFIVKTIHPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSF-----QDETVSVG 87
           S+   KFI +      R L LTLAKA+G++DS    +++++ ++ +       D TV VG
Sbjct: 34  SNPAPKFITR--RSPIRPLHLTLAKAEGNLDSAAPTSSSTSTSTSTAPSPFANDPTVFVG 91

Query: 88  QGNVPLEGVIQFEKPDFSSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLR 147
             +VPLEGVIQFEKP  S+RI KWGRVALLAGGDVLALL+F+ IGRF+HG S+ D +TLR
Sbjct: 92  GEDVPLEGVIQFEKPSSSARIEKWGRVALLAGGDVLALLVFATIGRFSHGLSILDLETLR 151

Query: 148 TADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPP 207
           TADPFIAGWFL AYFLGG+ +DGRGM GL K V+A  KSWA G+P+G+ IRA TSGH P 
Sbjct: 152 TADPFIAGWFLGAYFLGGFGEDGRGMKGLPKGVIATAKSWAVGIPIGIGIRAATSGHFPN 211

Query: 208 YTFILVTMGTTAVLLIGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW 263
           Y FI V++G+TAVLLI +RALL++ LP D SKK+DVYRRG+PFELFELLTSLVRRW
Sbjct: 212 YGFIFVSLGSTAVLLITFRALLYTILPVDSSKKSDVYRRGSPFELFELLTSLVRRW 267

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806854|ref|NP_001241570.1| uncharacterized protein LOC100790514 [Glycine max] gi|255640519|gb|ACU20545.1| unknown [Glycine max]

 Score =  286 bits (731), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 149/243 (61%), Positives = 187/243 (76%), Gaps = 4/243 (1%)

Query: 22  LSSSNPPLTSDSHKKSKFIVKTIHPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSF-Q 80
           ++ +NPP  + S+    FI + I    R   LTLAKA+G++DS++ + +TS+ +   F  
Sbjct: 29  ITVTNPP--TFSNPVPNFITRRIS-STRPFHLTLAKAEGNLDSDSPSTSTSSPSPSPFAT 85

Query: 81  DETVSVGQGNVPLEGVIQFEKPDFSSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFSV 140
           D+TV V   +VPLEGVIQFEKP  S    KWGRVALLAG DVLAL +FS IGR++HG SV
Sbjct: 86  DQTVFVTGKDVPLEGVIQFEKPASSPPFEKWGRVALLAGADVLALFVFSTIGRYSHGLSV 145

Query: 141 FDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAV 200
            D +TLRTADPFIAGWFL AYFLGG+ +DGRGMNGLSK VVA  KSWA G+P+G++I+A 
Sbjct: 146 LDLETLRTADPFIAGWFLGAYFLGGFGEDGRGMNGLSKGVVATAKSWAVGIPIGIVIKAA 205

Query: 201 TSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLV 260
           TSGHLP Y F+ V++G+TAVLL+ +RALL++ LP D SKK+D YRRG+PFELFELLTSLV
Sbjct: 206 TSGHLPNYGFVFVSLGSTAVLLVTFRALLYTILPVDNSKKSDDYRRGSPFELFELLTSLV 265

Query: 261 RRW 263
           RRW
Sbjct: 266 RRW 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512349|gb|AFK44236.1| unknown [Medicago truncatula]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 154/244 (63%), Positives = 189/244 (77%), Gaps = 7/244 (2%)

Query: 21  KLSSSNPPLTSDSHKKSKFIVKTIHPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSFQ 80
           K  +S  P    +++  KF   TI    + L LTLAKA+G++DS++    +S+  +    
Sbjct: 13  KFITSISPQQFFNNQPPKF--NTIRTLIKPLHLTLAKAEGNIDSSSPTKPSSSFAN---- 66

Query: 81  DETVSVGQGNVPLEGVIQFEKPD-FSSRINKWGRVALLAGGDVLALLLFSAIGRFNHGFS 139
           D+TV VG  +VPLEGVIQF+KP+  SSRI KWGRVAL AGGDVLALLLFS IGR++HG S
Sbjct: 67  DQTVFVGDKDVPLEGVIQFDKPNNSSSRIEKWGRVALFAGGDVLALLLFSTIGRYSHGLS 126

Query: 140 VFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRA 199
           VFDF+TL TADPFIAGWFL AYFLGG+++DGRGMNGL K V+A  KSWA G+P+G+ IRA
Sbjct: 127 VFDFETLHTADPFIAGWFLGAYFLGGFSEDGRGMNGLPKGVIATAKSWAIGIPIGIAIRA 186

Query: 200 VTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSL 259
             SGHLP Y F+LV++G+TAVLLI  RALL++ LP D SKK+DVYRRG+PFELFELLTSL
Sbjct: 187 AKSGHLPNYGFVLVSLGSTAVLLIAVRALLYAALPVDNSKKSDVYRRGSPFELFELLTSL 246

Query: 260 VRRW 263
           VRRW
Sbjct: 247 VRRW 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2028235	258	AT1G44920 "AT1G44920" [Arabido	0.821	0.837	0.642	3.3e-70

TAIR|locus:2028235 AT1G44920 "AT1G44920" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 142/221 (64%), Positives = 163/221 (73%)

Query:    45 HPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDF 104
             H  R  + L L+  DGSV+S  S +A S + S    DETV VGQ NVPLEGVIQF+KP  
Sbjct:    41 HRSRPRVVLALSNPDGSVNSKPSTSA-SQIPSSG--DETVFVGQDNVPLEGVIQFDKPSS 97

Query:   105 --SSRINKWGRXXXXXXXXXXXXXXFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYF 162
               SS I KWGR              FSAIGRF+HGF VF  DTL TADPFIAGWFLSAYF
Sbjct:    98 TSSSNITKWGRVALLAGGDVLALLIFSAIGRFSHGFPVFSLDTLHTADPFIAGWFLSAYF 157

Query:   163 LGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLL 222
             LGGYA++GRGM G SKAVVAA KSW  G PLG+IIR+ +SGH+P Y+F+LVTMG+TAVLL
Sbjct:   158 LGGYAEEGRGMKGKSKAVVAAAKSWIVGTPLGIIIRSASSGHIPAYSFVLVTMGSTAVLL 217

Query:   223 IGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW 263
             IGWRALLFS LP +  KK+D YR+G+ FELFELLTSL+RRW
Sbjct:   218 IGWRALLFSVLPTESKKKDDTYRKGSAFELFELLTSLIRRW 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      263       249   0.00080  114 3  11 22  0.42    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  179 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.91u 0.12s 20.03t   Elapsed:  00:00:01
  Total cpu time:  19.91u 0.12s 20.03t   Elapsed:  00:00:01
  Start:  Fri May 10 22:12:39 2013   End:  Fri May 10 22:12:40 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
pfam11255	111	pfam11255, DUF3054, Protein of unknown function (D	3e-33
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04

>gnl|CDD|221047 pfam11255, DUF3054, Protein of unknown function (DUF3054)

 Score =  116 bits (293), Expect = 3e-33
 Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 3/114 (2%)

Query: 117 LAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGL 176
           L  GDV+A+L+F+AIGR +HG  +       TA PF+ GW L A  LG Y    RG  G 
Sbjct: 1   LLVGDVVAVLVFAAIGRLSHGEGLSPGGVAATAWPFLIGWLLGAPLLGAY---RRGAVGP 57

Query: 177 SKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLF 230
             A+      W   VP+GL++RA+  G  P  +F++V + T AVLL+GWR L  
Sbjct: 58  RAAIPTGALVWLVAVPVGLLLRALLFGGGPALSFVVVALVTGAVLLLGWRGLAA 111

Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known. Length = 111

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 2/115 (1%)

Query: 120 GDVLALLLFSAIG-RFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSK 178
            D+LAL L   +      G  +            I   FL  +   G     RG + L  
Sbjct: 2   ADLLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLE- 60

Query: 179 AVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFL 233
            +     +W     L L +  +  G       +L+      VLL+ WR LL   L
Sbjct: 61  ELARVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
PF11255	112	DUF3054: Protein of unknown function (DUF3054); In	99.98
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	92.9
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	91.52
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	88.93
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	87.05
TIGR03013	442	EpsB_2 sugar transferase, PEP-CTERM system associa	80.25

>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed

Probab=99.98  E-value=2.8e-32  Score=221.83  Aligned_cols=111  Identities=43%  Similarity=0.751  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCcchhhHHhhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHH
Q 024735          118 AGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLII  197 (263)
Q Consensus       118 A~gDvvaVllFA~IGR~SHg~~~~~~gvl~TAwPFL~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~L  197 (263)
                      +++|++++++|+++||.|||++.++.++++|+|||++||+++|++.+.|+++..++  .++.++.++++|++|+++||+|
T Consensus         2 ~~~D~vav~~Fa~iGr~sHg~~~~~~~~l~Ta~PFl~Gw~~~~~~~~~~~~~~~~~--~~~~~~~g~~~W~~a~~vG~~L   79 (112)
T PF11255_consen    2 AVGDVVAVLLFALIGRISHGEALSPAGVLRTAWPFLVGWLLGWPLLGAYRRDARGS--PGRAWPTGVVVWLVAVPVGMAL   79 (112)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998889999999999999999999999999987655  3677888889999999999999


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 024735          198 RAVTSGHLPPYTFILVTMGTTAVLLIGWRALLF  230 (263)
Q Consensus       198 R~l~~Gg~p~~sFvlVA~~~laVlLlGWRal~a  230 (263)
                      |++..|+.++++|++|++++++++|+|||++++
T Consensus        80 R~~~~~~~~~~~FiiVa~~~~~vlL~gWR~~~a  112 (112)
T PF11255_consen   80 RALLFGGGPAWSFIIVALVFLAVLLLGWRAVAA  112 (112)
T ss_pred             HHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhC
Confidence            999767777899999999999999999999874

Currently no function is known.

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=92.90  E-value=1.5  Score=43.16  Aligned_cols=115  Identities=12%  Similarity=0.010  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCcchhhHHhhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHH
Q 024735          115 ALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLG  194 (263)
Q Consensus       115 ~LlA~gDvvaVllFA~IGR~SHg~~~~~~gvl~TAwPFL~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vG  194 (263)
                      .++...|++++++-.++.-.-+........+ .....+++-+.+...+.+.|+.- +.. .....+...+.+|+.+..+.
T Consensus        18 ~~~~l~Dl~ii~ls~~la~~lr~~~~~~~~~-~~~ll~~vv~~~~~~~~glY~~w-r~~-~~~~el~rI~~a~~la~lil   94 (463)
T PRK10124         18 MVQRFSDITIMFAGLWLVCEVSGLSFLYMHL-LVALITLVVFQMLGGITDFYRSW-RGV-KASTELALLLQNWTLSLIFS   94 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHHHHHHhcccCchh-hhc-cHHHHHHHHHHHHHHHHHHH
Confidence            4567799888866555544333322211111 11222222222222445667531 111 11123334445677766665


Q ss_pred             HHHHHhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 024735          195 LIIRAVTSG-HLPPYTFILVTMGTTAVLLIGWRALLFSFL  233 (263)
Q Consensus       195 l~LR~l~~G-g~p~~sFvlVA~~~laVlLlGWRal~a~v~  233 (263)
                      +++=.+... ..+ .++++...+++.+++.++|.++..+.
T Consensus        95 ~~l~~~~~~~~~s-R~v~l~~~ll~~vll~~~R~~~R~~~  133 (463)
T PRK10124         95 AGLVAFNNDFDTQ-LKIWLAWYLLTSIGLVVCRSCIRIGA  133 (463)
T ss_pred             HHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555433322 223 45666666777788889998777543

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=91.52  E-value=2.4  Score=40.99  Aligned_cols=79  Identities=16%  Similarity=0.150  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHHHHhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 024735          154 AGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTS-GHLPPYTFILVTMGTTAVLLIGWRALLFSF  232 (263)
Q Consensus       154 ~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~LR~l~~-Gg~p~~sFvlVA~~~laVlLlGWRal~a~v  232 (263)
                      +-|++...+.+.|+..-+.. ...+.+...+.+|+.+.++-+++=.+.. +..-+-+|+++...+..+++.+||.++..+
T Consensus        39 ~~~l~~~~~~glY~~~~~~~-~~~e~l~~i~~a~~l~~l~~~~~~~l~~~~~~~sR~~~~~~~~l~~~ll~~~R~~~r~~  117 (451)
T TIGR03023        39 LLFLLIFALFGLYRSWRRRS-RLREMLLRILLAWTLTFLILALLAFLLKTGGEFSRLWLLLWFLLALALLLLGRLILRLL  117 (451)
T ss_pred             HHHHHHHHHcCCccchhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556778886532211 1233243444566666655555544443 222235788888888999999999888765


Q ss_pred             c
Q 024735          233 L  233 (263)
Q Consensus       233 ~  233 (263)
                      .
T Consensus       118 ~  118 (451)
T TIGR03023       118 L  118 (451)
T ss_pred             H
Confidence            4

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=88.93  E-value=5.2  Score=38.57  Aligned_cols=78  Identities=19%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             HHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 024735          155 GWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLP  234 (263)
Q Consensus       155 GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~LR~l~~Gg~p~~sFvlVA~~~laVlLlGWRal~a~v~~  234 (263)
                      -+++...+.+.|+...+..  ....+...+.+|+.+..+-+++=.+..+....-+++++...+..+++.+||.++..+..
T Consensus        39 ~~l~~~~~~glY~~~~r~~--~~~el~ri~~a~~l~~l~~~~~~~~~~~~~~sR~~l~~~~~l~~~ll~~~R~~~r~~~~  116 (445)
T TIGR03025        39 LFLILFAASGLYRSWRGRS--FLEELARVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFLLALVLLLLWRLLLRRLLR  116 (445)
T ss_pred             HHHHHHHHcCcccchhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556678886532221  12233333445555554445444444322222577888888889999999998887654

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=87.05  E-value=14  Score=35.82  Aligned_cols=80  Identities=18%  Similarity=-0.003  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHHHHhhcC--CCCCchhHHHHHHHHHHHHHHHHH
Q 024735          150 DPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSG--HLPPYTFILVTMGTTAVLLIGWRA  227 (263)
Q Consensus       150 wPFL~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~LR~l~~G--g~p~~sFvlVA~~~laVlLlGWRa  227 (263)
                      .++++-|++...+.+.|+.. ...  ..+.+...+.+|+.+.++-+++=.+...  ..+ -+++++..+...+++.+||.
T Consensus        37 ~~~~~~~~~~~~~~glY~~~-~~~--~~~el~ri~~a~~l~~~~~~~~~~~~~~~~~~s-r~~~~~~~~l~~~~l~~~R~  112 (456)
T TIGR03022        37 LPVGLFFVAYRAHYGLYPGT-GMS--PWEELRRLTLATFALFLFILALAFFTKVSEPYS-RLVFLLAWGLALVLVPLARI  112 (456)
T ss_pred             HHHHHHHHHHHHhcCcCCcc-ccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHHHHHHHHH
Confidence            34444455555566778542 111  1223333445566555444443333332  223 46777788888899999998


Q ss_pred             HHHHhc
Q 024735          228 LLFSFL  233 (263)
Q Consensus       228 l~a~v~  233 (263)
                      ++....
T Consensus       113 ~~r~~~  118 (456)
T TIGR03022       113 LVRKLL  118 (456)
T ss_pred             HHHHHH
Confidence            887654

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated

Probab=80.25  E-value=20  Score=34.91  Aligned_cols=80  Identities=18%  Similarity=0.085  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHHHHhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHH
Q 024735          152 FIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSG-HLPPYTFILVTMGTTAVLLIGWRALLF  230 (263)
Q Consensus       152 FL~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~LR~l~~G-g~p~~sFvlVA~~~laVlLlGWRal~a  230 (263)
                      +++-+++...+.+.|+...+..  ..+.+......|+.+..+-+++=.+..+ ..+ -++++...++..+++.+||.++.
T Consensus        39 ~~~~~ll~f~~~glY~~~~~~~--~~~~l~ri~~a~~~~~l~l~~l~~l~~~~~~s-R~vl~l~~ll~~~ll~~~R~~~R  115 (442)
T TIGR03013        39 FALVVIISAIALGLYNVDLRED--FRGIIARLAISLLVSFLALSFIFYFYPEFYLG-RGLLALAIVLAGSLVLLSRLFFL  115 (442)
T ss_pred             HHHHHHHHHHHcCcCcchhccc--HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566667778886543321  1222333334555444333333222222 233 57777888888999999999887


Q ss_pred             Hhcc
Q 024735          231 SFLP  234 (263)
Q Consensus       231 ~v~~  234 (263)
                      .+..
T Consensus       116 ~~~~  119 (442)
T TIGR03013       116 KILG  119 (442)
T ss_pred             HHHH
Confidence            6654

Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00