Citrus Sinensis ID: 024760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDFGLNNGEDGYSWFSQNRNRPFDSELYT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEccccccccccccEEEEEEccccEEEEccccccccEEccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcEEccccEEEEEEcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHccccccccccccEEEEcccccccccccEEEEEEEcccHHHHHccccccccEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccEEEEEEccHHHHcccccccccccccccccccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
medvlteipppsrffqedlnnftpplpplpspfllfsnpkldaplrpTLLIVAisspslfvFHHLssktligslilpeipfsgnsiepsltdkscniyavndvdGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIqnrnfrgklppdetfaFKLETSAArkegpsllkdvdyfpsgsmvdglpaALLSRCqlknikgtlcvswpefggsavPFIQSLLQknvlpgmdfglnngedgyswfsqnrnrpfdselyt
Flexible Loop (DISEMBL)
medvlteipppsrFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAkvligeeiiperVLILDSIqnrnfrgklppdeTFAFKLETsaarkegpsllKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDFGLNNGEDGyswfsqnrnrpfdselyt
Low Complexity Region (SEG)
MEDVLTEIPPPSRFFQEDlnnftpplpplpspfllfsnpKLDAPLRPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDFGLNNGEDGYSWFSQNRNRPFDSELYT
Disordered region (IsUnstruct)
*******************************PFLLFSNPKLDAPLRPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKL****TFAFK************LLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDFGLNNGEDGYSWF**************
Disordered Region (DISOPRED)
**DVLTEIPPPSRFFQE*********PPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPF********LTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQNRN******PDETFAFKL***************VDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDFGLNN*EDG*SWFSQNRNRPFDS*LY*
Disordered Region (DISEMBL)
MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDFGLNNGEDGYSWFSQNRNRPFDSELYT
Disordered Region (DISPRO)
****LTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDFGLNNG*D*YSW*SQN*NRPFDS*LYT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDFGLNNGEDGYSWFSQNRNRPFDSELYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
225425045	267	PREDICTED: uncharacterized protein LOC10	0.988	0.973	0.714	2e-97
255546971	269	conserved hypothetical protein [Ricinus	1.0	0.977	0.706	1e-94
118486861	271	unknown [Populus trichocarpa]	1.0	0.970	0.675	6e-93
224111806	271	predicted protein [Populus trichocarpa]	1.0	0.970	0.675	1e-92
224101623	271	predicted protein [Populus trichocarpa]	1.0	0.970	0.660	3e-86
297814750	267	hypothetical protein ARALYDRAFT_484310 [	0.996	0.981	0.619	2e-85
18404561	267	uncharacterized protein [Arabidopsis tha	0.996	0.981	0.611	6e-84
449463531	266	PREDICTED: uncharacterized protein LOC10	0.973	0.962	0.630	2e-78
190899236	177	expressed protein [Populus tremula] gi|1	0.608	0.903	0.718	2e-61
190899248	177	expressed protein [Populus tremula] gi|1	0.608	0.903	0.718	3e-61

>gi|225425045|ref|XP_002270731.1| PREDICTED: uncharacterized protein LOC100256430 [Vitis vinifera]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/270 (71%), Positives = 226/270 (83%), Gaps = 10/270 (3%)

Query: 1   MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLF 60
           MEDVLTEIPPPSRFF+EDLNNFTPP PPLPS         LD PLR +LLI+AISSPSL 
Sbjct: 1   MEDVLTEIPPPSRFFKEDLNNFTPPSPPLPS--PFLLFSSLDKPLRSSLLIIAISSPSLS 58

Query: 61  VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAER 120
           VFHH+++KTLIG+LILPEIP SGNSIEPS+ DKSCNIYA+NDV   +L+VSVQ SV+AER
Sbjct: 59  VFHHVATKTLIGTLILPEIPLSGNSIEPSVRDKSCNIYALNDVYNSVLLVSVQYSVSAER 118

Query: 121 SHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKE---GPS--- 174
           SHA+AK+LIGE+IIPERVLI+DS+Q+RNFRGKL PDETFAFKLETS+ RKE   G S   
Sbjct: 119 SHAIAKLLIGEQIIPERVLIMDSVQSRNFRGKLSPDETFAFKLETSSERKEHSDGSSSSP 178

Query: 175 LLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPG 234
           LLK +DYFPSGSMVDGL AALLS+CQ++NIKGTLCVSWPEFGGS V  ++S++ K VLP 
Sbjct: 179 LLKGLDYFPSGSMVDGLAAALLSQCQMRNIKGTLCVSWPEFGGSGVSLVKSII-KEVLPS 237

Query: 235 MDFGLN-NGEDGYSWFSQNRNRPFDSELYT 263
           ++F +N +GED YS   Q ++ PFDSELYT
Sbjct: 238 LEFSVNSDGEDEYSKLDQIKDHPFDSELYT 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546971|ref|XP_002514543.1| conserved hypothetical protein [Ricinus communis] gi|223546147|gb|EEF47649.1| conserved hypothetical protein [Ricinus communis]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 190/269 (70%), Positives = 222/269 (82%), Gaps = 6/269 (2%)

Query: 1   MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLF 60
           MEDVLTEIPPPSRFFQEDLNNF  PLPPLPSPFLLFSNPK D PL P+LLI+A+S+PSL+
Sbjct: 1   MEDVLTEIPPPSRFFQEDLNNFASPLPPLPSPFLLFSNPKPDQPLCPSLLIIALSTPSLY 60

Query: 61  VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAER 120
           VF+H+SSKTLIGS+ LPEIPFSGN+IEPSL DKSCNIYA+ND D   L+ SVQCSV+AER
Sbjct: 61  VFNHVSSKTLIGSVFLPEIPFSGNTIEPSLRDKSCNIYALNDADKSTLLASVQCSVSAER 120

Query: 121 SHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARK------EGPS 174
           S+AVAK+LIG +IIPERVLILDSIQ++NFRGKL PDET AFKLET A RK       G S
Sbjct: 121 SNAVAKLLIGGQIIPERVLILDSIQSQNFRGKLSPDETHAFKLETLAERKGQVDGCGGSS 180

Query: 175 LLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPG 234
            LK ++YFPSGSMVDGL AALL++CQ++NI+GTLCVSWPE+GGS +  ++S+LQKNVL  
Sbjct: 181 FLKGLEYFPSGSMVDGLSAALLAQCQMRNIRGTLCVSWPEYGGSVIALVKSILQKNVLHD 240

Query: 235 MDFGLNNGEDGYSWFSQNRNRPFDSELYT 263
            D      ED    FS+ ++ P DSELYT
Sbjct: 241 FDMSSGEAEDKSLRFSRIKDHPCDSELYT 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486861|gb|ABK95265.1| unknown [Populus trichocarpa]

 Score =  346 bits (887), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 183/271 (67%), Positives = 224/271 (82%), Gaps = 8/271 (2%)

Query: 1   MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLF 60
           MEDVLTE+PPPSRFFQEDL+NF  P PPL SP LLFSNPK D PL P+LLI+A+SSPSL+
Sbjct: 1   MEDVLTELPPPSRFFQEDLDNFATPSPPLSSPSLLFSNPKPDQPLCPSLLIIALSSPSLY 60

Query: 61  VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAER 120
           +FHH+SSKTLIGSL+LPEIPFSGNS EPSL DKSCNIYA+ND+D   LVV VQCS++AER
Sbjct: 61  IFHHISSKTLIGSLVLPEIPFSGNSTEPSLDDKSCNIYALNDMDNLTLVVLVQCSISAER 120

Query: 121 SHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARK-------EGP 173
           S+AVAK+LIG++IIP+RVLI+DS+Q++NFRGKL PDET+ FKLETSA RK        G 
Sbjct: 121 SNAVAKLLIGDQIIPKRVLIMDSVQSQNFRGKLAPDETYVFKLETSAERKGLDGDVCGGS 180

Query: 174 SLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLP 233
           SLLK +DYFPSGS++DGL AALL+RCQ++ I+GTLCVSWP +G   V  ++SLLQ+NVLP
Sbjct: 181 SLLKGLDYFPSGSVLDGLAAALLARCQMRKIRGTLCVSWPRYGVYVVAMVKSLLQRNVLP 240

Query: 234 GMDFG-LNNGEDGYSWFSQNRNRPFDSELYT 263
           G D   + + +D  S F+  +N PFDS++YT
Sbjct: 241 GFDLSTIGDAKDKSSRFTSIKNYPFDSDMYT 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111806|ref|XP_002315984.1| predicted protein [Populus trichocarpa] gi|222865024|gb|EEF02155.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/271 (67%), Positives = 223/271 (82%), Gaps = 8/271 (2%)

Query: 1   MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLF 60
           MEDVLTE+PPPSRFFQEDL+NF  P PPL SP LLFSNPK D PL P+LLI+A+SSPSL+
Sbjct: 1   MEDVLTELPPPSRFFQEDLDNFATPSPPLSSPSLLFSNPKPDQPLCPSLLIIALSSPSLY 60

Query: 61  VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAER 120
           +FHH+SSKTLIGSL+LPEIPFSGNS EPSL DKSCNIYA+ND+D   LVV VQCS++AER
Sbjct: 61  IFHHISSKTLIGSLVLPEIPFSGNSTEPSLDDKSCNIYALNDMDNLTLVVLVQCSISAER 120

Query: 121 SHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARK-------EGP 173
           S+AVAK+LIG++IIP+RVLI+DS+Q++NFRGKL PDET+ FKLETSA RK        G 
Sbjct: 121 SNAVAKLLIGDQIIPKRVLIMDSVQSQNFRGKLAPDETYVFKLETSAERKGLDGDVCGGS 180

Query: 174 SLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLP 233
           SLLK +DYFPSGS++DGL AALL+RCQ++ I+GTLCVSWP +G   V  ++SLLQ+NVLP
Sbjct: 181 SLLKGLDYFPSGSVLDGLAAALLARCQMRKIRGTLCVSWPRYGVYVVAMVKSLLQRNVLP 240

Query: 234 GMDFG-LNNGEDGYSWFSQNRNRPFDSELYT 263
           G D   + +  D  S F+  +N PFDS++YT
Sbjct: 241 GFDLSTIGDANDKSSRFTSIKNYPFDSDMYT 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101623|ref|XP_002312357.1| predicted protein [Populus trichocarpa] gi|222852177|gb|EEE89724.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 179/271 (66%), Positives = 210/271 (77%), Gaps = 8/271 (2%)

Query: 1   MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLF 60
           M DVLTE+PP SRFFQEDL+NF    PPL SP LL +N K D PL P+LLI+A+SSPSL+
Sbjct: 1   MGDVLTELPPSSRFFQEDLDNFATSSPPLSSPSLLLTNLKPDKPLHPSLLIIALSSPSLY 60

Query: 61  VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAER 120
           VFHH+SSKTLIGSL+LPEIPFS N I PSL DKSCNIYA+N  D   LVVSVQCSV+AER
Sbjct: 61  VFHHISSKTLIGSLVLPEIPFSANLIGPSLGDKSCNIYALNGADNLTLVVSVQCSVSAER 120

Query: 121 SHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARK-------EGP 173
           S AVAK+LIG++IIPERVLILDS+QN+NFRG+L PDE   FKLETSA RK        G 
Sbjct: 121 SIAVAKLLIGDQIIPERVLILDSVQNQNFRGRLAPDEINVFKLETSAERKGLSDDGRGGS 180

Query: 174 SLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLP 233
           SLLK +DYFPSGS++DGL AALL+RCQ++ I+GTLCVSWP  G S V  + SLLQ+NVL 
Sbjct: 181 SLLKGLDYFPSGSVLDGLAAALLARCQMRKIRGTLCVSWPRHGVSVVAMVMSLLQRNVLH 240

Query: 234 GMDF-GLNNGEDGYSWFSQNRNRPFDSELYT 263
           G D   + +  D  S FS  +N PFDS++YT
Sbjct: 241 GFDLSSIGDSMDESSRFSSIKNYPFDSDMYT 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814750|ref|XP_002875258.1| hypothetical protein ARALYDRAFT_484310 [Arabidopsis lyrata subsp. lyrata] gi|297321096|gb|EFH51517.1| hypothetical protein ARALYDRAFT_484310 [Arabidopsis lyrata subsp. lyrata]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 166/268 (61%), Positives = 212/268 (79%), Gaps = 6/268 (2%)

Query: 1   MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLF 60
           MEDVLTE PPPSRFFQEDLNNF PPL  LPSPF++FSNPK + P RP+LLI+AISSPSL+
Sbjct: 1   MEDVLTENPPPSRFFQEDLNNFVPPLESLPSPFIIFSNPKPELPFRPSLLIIAISSPSLY 60

Query: 61  VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGR--ILVVSVQCSVAA 118
           VFH+L SKTL+GSLI+PE+PFSGN++EPSL DKSCNIY+++  D +  IL+VSVQ  V+ 
Sbjct: 61  VFHNLPSKTLLGSLIMPEVPFSGNTMEPSLEDKSCNIYSLSSTDDKNLILLVSVQLPVSP 120

Query: 119 ERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKE-GPSLLK 177
           ERS+ V++ LIG++IIPERV+ILDSIQ+RNFRG+L PDET A KLETSA +K    + L 
Sbjct: 121 ERSNLVSRFLIGQDIIPERVIILDSIQSRNFRGRLSPDETLAAKLETSAEKKAITHTGLV 180

Query: 178 DVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDF 237
           ++DYFPSGS++DGL A+LLS CQLKNI+GTL ++WPEFG S + F+ +LL+K ++P +D 
Sbjct: 181 NLDYFPSGSVIDGLSASLLSWCQLKNIRGTLVITWPEFGPSVIRFVGALLKK-IVPSLDV 239

Query: 238 GLNNG--EDGYSWFSQNRNRPFDSELYT 263
              N   E   S     ++   DS+LYT
Sbjct: 240 ASVNKDLERNSSRTGLKKDTWLDSDLYT 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404561|ref|NP_566770.1| uncharacterized protein [Arabidopsis thaliana] gi|9279734|dbj|BAB01324.1| unnamed protein product [Arabidopsis thaliana] gi|16604420|gb|AAL24216.1| AT3g25550/MWL2_17 [Arabidopsis thaliana] gi|19699216|gb|AAL90974.1| AT3g25550/MWL2_17 [Arabidopsis thaliana] gi|332643503|gb|AEE77024.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  316 bits (810), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 164/268 (61%), Positives = 208/268 (77%), Gaps = 6/268 (2%)

Query: 1   MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLF 60
           MEDVLTE PPPSRFFQEDLNNF  P   LPSPF++FSNPK + PLRP+LLI+AISSPSL+
Sbjct: 1   MEDVLTENPPPSRFFQEDLNNFVQPPESLPSPFIIFSNPKPELPLRPSLLIIAISSPSLY 60

Query: 61  VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGR--ILVVSVQCSVAA 118
           +FH L SKTL+GSLI+PE+PFSGN++EPSL DKSCNIY+++  D +   L+VSVQ  V+ 
Sbjct: 61  IFHSLPSKTLLGSLIMPEVPFSGNTMEPSLEDKSCNIYSLSSADDKNLTLLVSVQLPVSP 120

Query: 119 ERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSL-LK 177
           ERS+ V+++LI ++IIPERV+ILDSIQ+RNFRG+L PDET A KLETSA +K      L 
Sbjct: 121 ERSNLVSRLLIAKDIIPERVIILDSIQSRNFRGRLSPDETLAAKLETSAEKKATTHTGLV 180

Query: 178 DVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDF 237
           ++DYFPSGS++DGL A+LLSRCQLKNI+GTL +SWPEFG S + F  +LL+K ++P +D 
Sbjct: 181 NLDYFPSGSVIDGLSASLLSRCQLKNIRGTLVISWPEFGPSVIRFAGALLKK-IVPSLDV 239

Query: 238 GLNNG--EDGYSWFSQNRNRPFDSELYT 263
              N   E   S     ++   DS+LYT
Sbjct: 240 ASVNKDLEKNSSRTGLKKDTWLDSDLYT 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463531|ref|XP_004149487.1| PREDICTED: uncharacterized protein LOC101216987 [Cucumis sativus] gi|449515621|ref|XP_004164847.1| PREDICTED: uncharacterized protein LOC101226906 [Cucumis sativus]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/273 (63%), Positives = 211/273 (77%), Gaps = 17/273 (6%)

Query: 1   MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLF 60
           MEDVLTEIPPPSRFFQ+DLNNF PP P LPSPFLLF   K +  LRP+LL++AISSPSL 
Sbjct: 1   MEDVLTEIPPPSRFFQDDLNNFAPPSPSLPSPFLLFPKSKPNELLRPSLLVIAISSPSLH 60

Query: 61  VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAER 120
           +F HLS+KTLIGSLILPEIPFSGN I+PS+ DKSC+IY+++  +  I++VSVQ SV AER
Sbjct: 61  LFRHLSAKTLIGSLILPEIPFSGNHIQPSVDDKSCDIYSIDQDNELIILVSVQFSVPAER 120

Query: 121 SHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARK------EGPS 174
           S  VAK+L+  +IIPERVLILDS+Q++NFRGKL PDETFAFKLETS+  K      +G  
Sbjct: 121 SLLVAKLLLDNKIIPERVLILDSLQSQNFRGKLSPDETFAFKLETSSESKRNDEGNDGSQ 180

Query: 175 LLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKN--VL 232
           +LK +DY+PSGS+VDGL AALL RCQ+KNIKG LCVSWPE+G   +  ++SLL +N  + 
Sbjct: 181 MLKGLDYYPSGSVVDGLAAALLGRCQMKNIKGALCVSWPEYGSEVLSLLKSLLHQNAPLQ 240

Query: 233 PGMDF--GLNNGEDGYSWFSQNRNRPFDSELYT 263
           P ++F  G NNG D Y+      NR  D +LYT
Sbjct: 241 PILEFCTGSNNG-DEYA------NRIKDLDLYT 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190899236|gb|ACE98131.1| expressed protein [Populus tremula] gi|190899238|gb|ACE98132.1| expressed protein [Populus tremula] gi|190899240|gb|ACE98133.1| expressed protein [Populus tremula] gi|190899244|gb|ACE98135.1| expressed protein [Populus tremula] gi|190899250|gb|ACE98138.1| expressed protein [Populus tremula] gi|190899252|gb|ACE98139.1| expressed protein [Populus tremula] gi|190899254|gb|ACE98140.1| expressed protein [Populus tremula] gi|190899256|gb|ACE98141.1| expressed protein [Populus tremula] gi|190899260|gb|ACE98143.1| expressed protein [Populus tremula] gi|190899262|gb|ACE98144.1| expressed protein [Populus tremula] gi|190899266|gb|ACE98146.1| expressed protein [Populus tremula] gi|190899268|gb|ACE98147.1| expressed protein [Populus tremula] gi|190899270|gb|ACE98148.1| expressed protein [Populus tremula] gi|190899272|gb|ACE98149.1| expressed protein [Populus tremula] gi|190899274|gb|ACE98150.1| expressed protein [Populus tremula] gi|190899278|gb|ACE98152.1| expressed protein [Populus tremula] gi|190899282|gb|ACE98154.1| expressed protein [Populus tremula] gi|190899284|gb|ACE98155.1| expressed protein [Populus tremula] gi|190899288|gb|ACE98157.1| expressed protein [Populus tremula] gi|190899292|gb|ACE98159.1| expressed protein [Populus tremula] gi|190899296|gb|ACE98161.1| expressed protein [Populus tremula] gi|190899298|gb|ACE98162.1| expressed protein [Populus tremula] gi|190899300|gb|ACE98163.1| expressed protein [Populus tremula] gi|190899302|gb|ACE98164.1| expressed protein [Populus tremula] gi|190899306|gb|ACE98166.1| expressed protein [Populus tremula] gi|190899310|gb|ACE98168.1| expressed protein [Populus tremula]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 143/167 (85%), Gaps = 7/167 (4%)

Query: 36  FSNPKLDAPLRPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSC 95
           FSNPK D PL P+LLI+A+SSPSL++FHH+SSKTLIGSL+LPEIPFSGNS EPSL DKSC
Sbjct: 11  FSNPKPDQPLCPSLLIIALSSPSLYIFHHISSKTLIGSLVLPEIPFSGNSTEPSLGDKSC 70

Query: 96  NIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPP 155
           NIYA+ND+D   LVV VQCS++AERS AVAK+LIG++IIP+RVLI+DS+Q++NFRGKL P
Sbjct: 71  NIYALNDMDNLTLVVLVQCSISAERSSAVAKLLIGDQIIPKRVLIMDSVQSQNFRGKLAP 130

Query: 156 DETFAFKLETSAARK-------EGPSLLKDVDYFPSGSMVDGLPAAL 195
           DET+ FKLETSA RK        G SLLK +DYFPSGS++DGL AAL
Sbjct: 131 DETYVFKLETSAERKGLDGDVCGGSSLLKGLDYFPSGSVLDGLAAAL 177

Source: Populus tremula

Species: Populus tremula

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190899248|gb|ACE98137.1| expressed protein [Populus tremula] gi|190899304|gb|ACE98165.1| expressed protein [Populus tremula]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 143/167 (85%), Gaps = 7/167 (4%)

Query: 36  FSNPKLDAPLRPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSC 95
           FSNPK D PL P+LLI+A+SSPSL++FHH+SSKTLIGSL+LPEIPFSGNS EPSL DKSC
Sbjct: 11  FSNPKPDQPLCPSLLIIALSSPSLYIFHHISSKTLIGSLVLPEIPFSGNSAEPSLGDKSC 70

Query: 96  NIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPP 155
           NIYA+ND+D   LVV VQCS++AERS AVAK+LIG++IIP+RVLI+DS+Q++NFRGKL P
Sbjct: 71  NIYALNDMDNLTLVVLVQCSISAERSSAVAKLLIGDQIIPKRVLIMDSVQSQNFRGKLAP 130

Query: 156 DETFAFKLETSAARK-------EGPSLLKDVDYFPSGSMVDGLPAAL 195
           DET+ FKLETSA RK        G SLLK +DYFPSGS++DGL AAL
Sbjct: 131 DETYVFKLETSAERKGLDGDVCGGSSLLKGLDYFPSGSVLDGLAAAL 177

Source: Populus tremula

Species: Populus tremula

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:505006374	267	AT3G25545 "AT3G25545" [Arabido	0.996	0.981	0.559	9.9e-71

TAIR|locus:505006374 AT3G25545 "AT3G25545" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 150/268 (55%), Positives = 192/268 (71%)

Query:     1 MEDVLTEIPPPSRFFQEDXXXXXXXXXXXXXXXXXXXXXKLDAPLRPTLLIVAISSPSLF 60
             MEDVLTE PPPSRFFQED                     K + PLRP+LLI+AISSPSL+
Sbjct:     1 MEDVLTENPPPSRFFQEDLNNFVQPPESLPSPFIIFSNPKPELPLRPSLLIIAISSPSLY 60

Query:    61 VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGR--ILVVSVQCSVAA 118
             +FH L SKTL+GSLI+PE+PFSGN++EPSL DKSCNIY+++  D +   L+VSVQ  V+ 
Sbjct:    61 IFHSLPSKTLLGSLIMPEVPFSGNTMEPSLEDKSCNIYSLSSADDKNLTLLVSVQLPVSP 120

Query:   119 ERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSL-LK 177
             ERS+ V+++LI ++IIPERV+ILDSIQ+RNFRG+L PDET A KLETSA +K      L 
Sbjct:   121 ERSNLVSRLLIAKDIIPERVIILDSIQSRNFRGRLSPDETLAAKLETSAEKKATTHTGLV 180

Query:   178 DVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDF 237
             ++DYFPSGS++DGL A+LLSRCQLKNI+GTL +SWPEFG S + F  +LL+K ++P +D 
Sbjct:   181 NLDYFPSGSVIDGLSASLLSRCQLKNIRGTLVISWPEFGPSVIRFAGALLKK-IVPSLDV 239

Query:   238 GLNNG--EDGYSWFSQNRNRPFDSELYT 263
                N   E   S     ++   DS+LYT
Sbjct:   240 ASVNKDLEKNSSRTGLKKDTWLDSDLYT 267


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      263       242   0.00096  113 3  11 22  0.44    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.44u 0.08s 20.52t   Elapsed:  00:00:02
  Total cpu time:  20.44u 0.08s 20.52t   Elapsed:  00:00:02
  Start:  Fri May 10 23:35:25 2013   End:  Fri May 10 23:35:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
COG1938	244	Archaeal enzymes of ATP-grasp superfamily [General	97.9
TIGR00161	238	conserved hypothetical protein TIGR00161. This ort	97.42
PF09754	219	PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (	96.23
TIGR00162	188	conserved hypothetical protein TIGR00162. This ort	95.76
PF10450	273	POC1: POC1 chaperone; InterPro: IPR018855 This ent	93.53

>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]

Probab=97.90  E-value=1.9e-05  Score=72.70  Aligned_cols=174  Identities=18%  Similarity=0.214  Sum_probs=120.2

Q ss_pred             CCcEEEEEecCCc-------eeeeeccCCCceeeeeeecCCCCCCCCCCCCCCCCceEEEeecCCCCcEEEEEeeccccc
Q 024760           46 RPTLLIVAISSPS-------LFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAA  118 (263)
Q Consensus        46 ~pslLIiAvs~~S-------~~ll~~i~~~~lvGsl~lpe~~~~g~s~~ps~~d~~c~ly~l~~~~~~vLl~~vq~~Vp~  118 (263)
                      .+..||.++.+..       -|+... -+-.-+|.+.-...|=- ..+.-.-..+-..||+.   +.++++..++.+|++
T Consensus        15 e~~ilI~g~PgiGlVG~Ia~~~li~~-l~m~~iG~i~s~~~PPv-~vv~~G~~~~P~RIY~~---~~~~~~~~~dv~I~p   89 (244)
T COG1938          15 ENPILIEGFPGIGLVGVIAGKHLIEE-LNMEEIGYIESKHIPPV-AVVVEGRALPPFRIYAS---SDGVLALVSDVPIPP   89 (244)
T ss_pred             cCCEEEEeCCCCchhhHHHHHHHHHH-cCCeEEEEEEecCCCCE-EEEeCCcccCceeEEec---CCCEEEEEecCCCCH
Confidence            5678888888743       455544 35777888877644311 00100011124567765   359999999999999


Q ss_pred             ccHHHHHHHHHh--cccccCeEEEecccccccccCCCCCChhhhhhhhchhhhccCCCCCccCCCCCCCCccCChHHHHh
Q 024760          119 ERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALL  196 (263)
Q Consensus       119 er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~s~dep~l~~L~TsA~r~~~~~~~~~~p~lp~pnvV~GLpAAvL  196 (263)
                      .--+..++++.+  .+...+.|+++..++..-++.     ++-.|-+-|+......- ...+.+.++.| +|.|+.|++|
T Consensus        90 ~~i~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e-----~~~v~~va~~~~~~~~l-~~~~~~~~~~G-~I~G~~g~ll  162 (244)
T COG1938          90 AVIYEISNAVVEWAEENGVEEVISLGGMPARLREE-----KPSVYGVATSEEKLEKL-KDLGAEPLEEG-TIVGPSGALL  162 (244)
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEEEecCCCcccccC-----CCceEEEecchhhhhHH-hhcCCCccccc-eeecccHHHH
Confidence            999999999986  455568999999997666655     44445555554422210 01136679999 9999999999


Q ss_pred             hcccccccceEEEEec-------cCCCCChHHHHHHHHhccc
Q 024760          197 SRCQLKNIKGTLCVSW-------PEFGGSAVPFIQSLLQKNV  231 (263)
Q Consensus       197 s~CQv~~i~a~L~Vs~-------p~~~~svv~~~~s~L~~~v  231 (263)
                      ++|..++|+|.+++.-       |++-.++|+.++.++.-||
T Consensus       163 ~e~~~r~i~a~~ll~et~~~~PDP~AAa~vve~lnk~~~l~V  204 (244)
T COG1938         163 NECLKRGIPALVLLAETFGDRPDPRAAARVVEALNKMLGLNV  204 (244)
T ss_pred             HHHHHcCCCeEEEeccccCCCCChHHHHHHHHHHHHHhcCcc
Confidence            9999999999988776       5566677888888877765

>TIGR00161 conserved hypothetical protein TIGR00161

Probab=97.42  E-value=0.0012  Score=59.77  Aligned_cols=147  Identities=12%  Similarity=0.266  Sum_probs=97.6

Q ss_pred             CCCCcEEEEEecC-------CceeeeeccCCCceeeeeeecCCC-CCCCCCCCCCCCCceEEEeecCCCCcEEEEEeecc
Q 024760           44 PLRPTLLIVAISS-------PSLFVFHHLSSKTLIGSLILPEIP-FSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCS  115 (263)
Q Consensus        44 ~L~pslLIiAvs~-------~S~~ll~~i~~~~lvGsl~lpe~~-~~g~s~~ps~~d~~c~ly~l~~~~~~vLl~~vq~~  115 (263)
                      .++...||.++.+       .+-||.++ -+-+.+|.+.-++.| ..+  +.-...-..+.||.-+   +.+++.+....
T Consensus        13 ~~~~~ilI~gfpg~G~VG~iA~~~Li~~-l~~~~ig~I~s~~~pP~v~--v~~g~~~~p~riY~~~---~~~vv~~~~~~   86 (238)
T TIGR00161        13 DVENPIVIEGFPGVGLVGNIAGWLLIED-LKLREIGYIDSKYFPPLAV--LYKGVAIPPVRIYEGK---DGIVLFLSDFI   86 (238)
T ss_pred             cCCCCEEEEeCCCCChHHHHHHHHHHHH-cCCeEEEEEecCCCCCeEE--ecCCeecCceEEEecC---CcEEEEEeccc
Confidence            4667799999988       33566666 357889988887643 221  1111122357788643   22455666667


Q ss_pred             cccccHHHHHHHHHh--cccccCeEEEecccccccccCCC----CCChhhhhhhhchhhhccCCCCCccCCCCCCCCccC
Q 024760          116 VAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKL----PPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVD  189 (263)
Q Consensus       116 Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~----s~dep~l~~L~TsA~r~~~~~~~~~~p~lp~pnvV~  189 (263)
                      +++.+.+.+++.++.  +....++|++|++....+ |-.-    +.+......|+..            .+.++.| .++
T Consensus        87 i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~-~~~~v~~~at~~~~~~~l~~~------------~~~~~~g-~i~  152 (238)
T TIGR00161        87 IPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVRE-KSQPVFGAANSQELIERLKDL------------IEIFPFG-NLN  152 (238)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCC-CCCcEEEEECCHHHHHHHHHh------------cCcCCCC-EEe
Confidence            888888899999985  233358999999999974 2211    3455565555443            1224445 589


Q ss_pred             ChHHHHhhcccccccceEEEE
Q 024760          190 GLPAALLSRCQLKNIKGTLCV  210 (263)
Q Consensus       190 GLpAAvLs~CQv~~i~a~L~V  210 (263)
                      |+.+.+|++|+.++|+|..+.
T Consensus       153 G~~g~ll~~a~~~gi~~i~Ll  173 (238)
T TIGR00161       153 GISGTLLTRCAVNDIPAICLL  173 (238)
T ss_pred             chhHHHHHHHHHcCCCEEEEE
Confidence            999999999999999998553

This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.

>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes

Probab=96.23  E-value=0.0051  Score=53.28  Aligned_cols=147  Identities=14%  Similarity=0.203  Sum_probs=85.7

Q ss_pred             ceeeeeccCCCceeeeeee-cCCCCCCCCCC----CC--CCCCceEEEeecCCCCcEEEEEeecccccccHHHHHHHHHh
Q 024760           58 SLFVFHHLSSKTLIGSLIL-PEIPFSGNSIE----PS--LTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIG  130 (263)
Q Consensus        58 S~~ll~~i~~~~lvGsl~l-pe~~~~g~s~~----ps--~~d~~c~ly~l~~~~~~vLl~~vq~~Vp~er~~aWa~~L~~  130 (263)
                      +-||.+++ +-+.+|.+-. +-.|..|+.--    ..  ..-..+-||..++ . .+++.+...+++......+++.++.
T Consensus        16 ~d~Li~~l-~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~~~~~iy~~~~-~-~i~vl~~~~p~~~~~~~~f~~~l~~   92 (219)
T PF09754_consen   16 VDHLIESL-NLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILSPPLEIYYSED-S-KILVLQGRSPIPPGRWYEFAEELLD   92 (219)
T ss_dssp             HHHHHHHS-CEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB-SEEEEEEEC-T-TEEEEEESSE--SCGHHHHHHHHHH
T ss_pred             HHHHHHhC-CCEEEEEEeccccCCCccCCCeEEeccccceeccceEEEEECC-C-CEEEEEecCCCCchHHHHHHHHHHH
Confidence            35677773 5788888887 45665443210    00  1112578888883 2 3777777779999999999999885


Q ss_pred             --cccccCeEEEecccccccccCCCCCChhhhhhhhchhhhccCCCCCccCCCCCCCCccCChHHHHhhcccccccceEE
Q 024760          131 --EEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTL  208 (263)
Q Consensus       131 --~~l~pe~VivLds~~~~~yrg~~s~dep~l~~L~TsA~r~~~~~~~~~~p~lp~pnvV~GLpAAvLs~CQv~~i~a~L  208 (263)
                        +.....+|++|+++++++-.++.    +..+..-|....+...+  .++. .....++.|+.+.++..|+.++|++..
T Consensus        93 ~~~~~g~~~vi~l~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g~~~~l~~~~~~~~i~~~~  165 (219)
T PF09754_consen   93 WIKSFGVKEVIVLGGLPAMEPHERP----PVYRVATSEELLDKLEE--AGIE-LSEEGIIVGPSGLLLNEAEERGIPAIC  165 (219)
T ss_dssp             HHHHTTECEEEEEEEEEESS-TTS-----EEEEEESSGGGHCHSHH--TT-E-E-SEEEE-HHHHHHHHHHHHTT-EEEE
T ss_pred             HHHHcCCCEEEEEeCCcCCCCcccc----ceEEEEcCHHHhhhhcc--cccc-cccCCCccCchHHHHHHHHhCCCCceE
Confidence              33345899999999999766321    22232222222222110  1233 333348889999999999999999964


Q ss_pred             -EEeccC
Q 024760          209 -CVSWPE  214 (263)
Q Consensus       209 -~Vs~p~  214 (263)
                       ++..|.
T Consensus       166 l~~~~~~  172 (219)
T PF09754_consen  166 LLAETPG  172 (219)
T ss_dssp             EEEEEEG
T ss_pred             EEeecCC
Confidence             444443

Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.

>TIGR00162 conserved hypothetical protein TIGR00162

Probab=95.76  E-value=0.063  Score=47.30  Aligned_cols=111  Identities=17%  Similarity=0.240  Sum_probs=72.1

Q ss_pred             EEEeec-CCC-CcEEEEEe-ecccccccHHHHHHHHHh--cccccCeEEEecccccccccCCC-----CCChhhhhhhhc
Q 024760           96 NIYAVN-DVD-GRILVVSV-QCSVAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKL-----PPDETFAFKLET  165 (263)
Q Consensus        96 ~ly~l~-~~~-~~vLl~~v-q~~Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~-----s~dep~l~~L~T  165 (263)
                      .||.++ +.+ ..+++..- .+.++++-.+..++.+++  +++..++|+.|++.+....-++.     +.+..++..|+.
T Consensus         4 ~~y~~~~~~~~~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~~~trp~V~~~at~~el~~~l~~   83 (188)
T TIGR00162         4 EFYAWRSDGNGTDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGKLVEEPYVYGAATSPELVEELKE   83 (188)
T ss_pred             eEEEEccCCCCCCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCCCCCCCceEEEeCCHHHHHHHHh
Confidence            466665 222 34444333 346777777788888875  34446899999999887543332     445556655554


Q ss_pred             hhhhccCCCCCccCCC-CCCCCccCChHHHHhhcccccccceE-EEEeccCCCCC
Q 024760          166 SAARKEGPSLLKDVDY-FPSGSMVDGLPAALLSRCQLKNIKGT-LCVSWPEFGGS  218 (263)
Q Consensus       166 sA~r~~~~~~~~~~p~-lp~pnvV~GLpAAvLs~CQv~~i~a~-L~Vs~p~~~~s  218 (263)
                      .           +.+. +| ...++|+.+.+|.+|+.++|+|. |++..|.+-..
T Consensus        84 ~-----------g~~~~~~-~g~i~G~~glLl~~a~~~gi~ai~L~~e~p~y~pD  126 (188)
T TIGR00162        84 H-----------GVKFREP-GGGIIGASGLLLGVSELEGIPGACLMGETPGYMID  126 (188)
T ss_pred             c-----------CCeeecC-CCccccHHHHHHHHHHHCCCCeEEEEEeCCCCCCC
Confidence            2           1222 33 45799999999999999999998 55666554333

This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.

>PF10450 POC1: POC1 chaperone; InterPro: IPR018855 This entry represents fungal proteosome chaperone 1, a chaperone of the 20S proteasome which functions in early 20S proteasome assembly []

Probab=93.53  E-value=2.1  Score=40.45  Aligned_cols=195  Identities=20%  Similarity=0.258  Sum_probs=105.3

Q ss_pred             CcCCCCCCCCChhhh-ccCCCCCCCCCCcEEEEeCCCCCCCCCCcEEEEEecCCceeee-eccCCCceee----eeeecC
Q 024760            5 LTEIPPPSRFFQEDL-NNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLFVF-HHLSSKTLIG----SLILPE   78 (263)
Q Consensus         5 ~t~~pppsrf~~edl-~~f~~~~~~~p~p~~~~s~~~~~~~L~pslLIiAvs~~S~~ll-~~i~~~~lvG----sl~lpe   78 (263)
                      -+|.+-|--...++. +......++.|-|-|.+.+  .+-. ..+.+||... .-..+| ..+.+.+-+|    ++.+.+
T Consensus         6 Wne~~~PRH~LD~~~~~~~~~sl~~~PiP~V~~~~--~~~~-~~~~~iitt~-im~~Lfp~~l~~~~~igei~~tl~~~~   81 (273)
T PF10450_consen    6 WNETREPRHQLDDPVESADDDSLQPSPIPEVSFPN--IDTS-KYEYIIITTK-IMNPLFPKKLIKLTKIGEIVITLTINE   81 (273)
T ss_pred             ccccCCCchhccCccccCCccccCCCCCceEEecc--CCCc-ccceEEEecc-cccccchHhhcCcceeeEEEEEEEecC
Confidence            467777877777654 4444455567777788865  2332 5777887543 323344 3455566667    443432


Q ss_pred             CCCCCCCC-------CCCC----------CCC----ceEEEeecCCCCcEEEEEeecc--cccccHHHHHHHHHhccccc
Q 024760           79 IPFSGNSI-------EPSL----------TDK----SCNIYAVNDVDGRILVVSVQCS--VAAERSHAVAKVLIGEEIIP  135 (263)
Q Consensus        79 ~~~~g~s~-------~ps~----------~d~----~c~ly~l~~~~~~vLl~~vq~~--Vp~er~~aWa~~L~~~~l~p  135 (263)
                      -...+.+-       +..+          .++    .-.||.++   .+++++..+..  +++=-.+.-||+|.. ++..
T Consensus        82 ~~~~~~~~~~~~d~dE~~~~ev~~k~~~~~~k~~~~~~pI~~~~---dtllv~i~enfl~~~pI~~N~la~~l~~-~L~~  157 (273)
T PF10450_consen   82 NSSVEDSEEHSWDEDEQFPNEVDEKQDSNKEKTYSFEIPIYSFG---DTLLVSIKENFLKYSPIFYNFLARQLVS-KLIQ  157 (273)
T ss_pred             CCccccccccccccccchhhhhhhhhhhhhhcccceEEEEEEEC---CEEEEEEecCcccccHHHHHHHHHHHHH-HHhc
Confidence            22221111       1111          111    34458777   24444444555  366667788888873 5432


Q ss_pred             ---C-eEEEecccccccccCCCCCChhhhhhhhchhhhccCCCCCccCCCCCCCCccCChHHHHhhcccccccceEEEEe
Q 024760          136 ---E-RVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVS  211 (263)
Q Consensus       136 ---e-~VivLds~~~~~yrg~~s~dep~l~~L~TsA~r~~~~~~~~~~p~lp~pnvV~GLpAAvLs~CQv~~i~a~L~Vs  211 (263)
                         + ..+.+...           |-  .-+++      .   .....|.|-+|.+|||+.||++|++...+.+.-...-
T Consensus       158 ~~~~i~~~~l~~s-----------D~--i~~~k------~---l~~~~~~L~PPeFITG~~asvlsqL~~~~~~~~~~lV  215 (273)
T PF10450_consen  158 SKNEIKNILLGNS-----------DR--ITNLK------V---LSNSVPSLQPPEFITGFIASVLSQLLSKEVPVFTALV  215 (273)
T ss_pred             ccchhhhhcccch-----------hh--hhhce------e---cccCCcccCCccHhHhHHHHHHHHhhccCCCceeEEE
Confidence               1 11222110           00  01111      1   1123688999999999999999999888887422222


Q ss_pred             ccC--------CCCChHHHHHHHHhc
Q 024760          212 WPE--------FGGSAVPFIQSLLQK  229 (263)
Q Consensus       212 ~p~--------~~~svv~~~~s~L~~  229 (263)
                      .|.        .+.+.+.-+-.+++.
T Consensus       216 v~SEGp~GfEK~~~~~i~dl~~v~~~  241 (273)
T PF10450_consen  216 VPSEGPIGFEKLDLDTIVDLIDVCGQ  241 (273)
T ss_pred             ecCCCCCCceecCHHHHHHHHHHHHH
Confidence            333        344445556666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 34/247 (13%), Positives = 65/247 (26%), Gaps = 82/247 (33%)

Query: 46  RPTLLIVAISSPSLFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTD-------KSC--- 95
            P  ++  +      + + +       S     I    +SI+  L         ++C   
Sbjct: 194 SPETVLEMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 96  --NIYAVNDVDG-----RILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQNRN 148
             N+      +      +IL+ +        R   V   L          + LD     +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTT--------RFKQVTDFLSAAT---TTHISLD-----H 293

Query: 149 FRGKLPPDET---FAFKLETSA------ARKEGP-------SLLKDV----DYFPS---- 184
               L PDE        L+              P         ++D     D +      
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 185 ------GSMVDGLPAALLSRC--QL----KNIK---GTLCVSWPEFGGSAVPFI------ 223
                  S ++ L  A   +   +L     +       L + W +   S V  +      
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 224 QSLLQKN 230
            SL++K 
Sbjct: 414 YSLVEKQ 420

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
2p90_A	319	Hypothetical protein CGL1923; structural genomics,	95.5
3gaa_A	252	Uncharacterized protein TA1441; the protein with u	94.76
4g4s_O	276	Proteasome chaperone 1; alpha beta, NTN-hydrolase,	93.47
3mnf_A	250	PAC2 family protein; PSI2, MCSG, structural genomi	81.8
3e35_A	325	Uncharacterized protein SCO1997; alpha/beta/alpha	80.24

>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1

Probab=95.50  E-value=0.027  Score=51.91  Aligned_cols=149  Identities=16%  Similarity=0.091  Sum_probs=94.3

Q ss_pred             CCcEEEEEecC----------CceeeeeccCCCceeeeeeecCC-------CCCCCCCC-C---CCCCCceEEEeecCCC
Q 024760           46 RPTLLIVAISS----------PSLFVFHHLSSKTLIGSLILPEI-------PFSGNSIE-P---SLTDKSCNIYAVNDVD  104 (263)
Q Consensus        46 ~pslLIiAvs~----------~S~~ll~~i~~~~lvGsl~lpe~-------~~~g~s~~-p---s~~d~~c~ly~l~~~~  104 (263)
                      +--.||+|+-+          .+-||+.++ +-..||.+-..+.       |.-  ++. -   ........||..++.+
T Consensus        24 ~~pvli~a~eG~~daG~vg~iA~~hLi~~l-~~~~va~id~d~l~Dy~~~RP~v--~~~~d~~~~~~~p~~~ly~~~~~~  100 (319)
T 2p90_A           24 GGPTLIVALQGYADAGHAVESSSSHLMDAL-DHRLIASFNNDELIDYRSRRPVV--VIEHNEVTSMDELNLGLHVVRDND  100 (319)
T ss_dssp             SCCEEEEEEESSSBGGGHHHHHHHHHHHHS-CEEEEEEECHHHHCBHHHHCCCE--EECSSSEEEECCCCCEEEEEECTT
T ss_pred             CCCEEEEEeeeCCChhHHHHHHHHHHHHHc-CCeEEEEEechhcccccCCCCcE--EEECCcccccccCCeEEEEecCCC
Confidence            44588888876          336666663 4778888876543       321  111 0   1333467889887544


Q ss_pred             CcEEEEEeecccccccHHHHHHHHHh--cccccCeEEEecccccccccCCCCCChhhhhhhhch--hhhccCCCCCccCC
Q 024760          105 GRILVVSVQCSVAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETS--AARKEGPSLLKDVD  180 (263)
Q Consensus       105 ~~vLl~~vq~~Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~s~dep~l~~L~Ts--A~r~~~~~~~~~~p  180 (263)
                      +.-++.... ++|..+-+..++.+++  +.+..++|++|.+++...-.+         +.....  +.+....+..  -.
T Consensus       101 g~~~lll~g-peP~~~w~~f~~~vl~~a~~~gV~~vv~Lggl~~~~pht---------rp~~V~~~at~~~l~~~~--~~  168 (319)
T 2p90_A          101 NKPFLMLSG-PEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVPHT---------RPTVVTAHGNSTDRLKDQ--VS  168 (319)
T ss_dssp             CCEEEEEEE-ECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTT---------SCCCEEEEESSGGGCSSC--CC
T ss_pred             CCeEEEEEC-CCChHHHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCC---------CCCCeEEEeCCHHHHhhh--hc
Confidence            444444444 9999999999999985  344458999999999862222         111111  1111111111  13


Q ss_pred             CCCCCCccCChHHHHhhcccccccceEEE
Q 024760          181 YFPSGSMVDGLPAALLSRCQLKNIKGTLC  209 (263)
Q Consensus       181 ~lp~pnvV~GLpAAvLs~CQv~~i~a~L~  209 (263)
                      ++..+.+..|+.+.++.+|..++|++..+
T Consensus       169 ~~~~~~ipggi~glL~~~~~~~Gi~a~~l  197 (319)
T 2p90_A          169 LDTRMTVPGSASLMLEKLLKDKGKNVSGY  197 (319)
T ss_dssp             CCCCEEECCCHHHHHHHHHHHTTCCEEEE
T ss_pred             cccCcEEeccHHHHHHHHHHHCCCCEEEE
Confidence            46778888899999999999999999854

>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}

Probab=94.76  E-value=0.081  Score=46.83  Aligned_cols=163  Identities=13%  Similarity=0.250  Sum_probs=99.5

Q ss_pred             CCCCcEEEEEecC-------CceeeeeccCCCceeeeeeecCCCC-CCCCCCCCCCCCceEEEeecCCCCcEEEEEeecc
Q 024760           44 PLRPTLLIVAISS-------PSLFVFHHLSSKTLIGSLILPEIPF-SGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCS  115 (263)
Q Consensus        44 ~L~pslLIiAvs~-------~S~~ll~~i~~~~lvGsl~lpe~~~-~g~s~~ps~~d~~c~ly~l~~~~~~vLl~~vq~~  115 (263)
                      .++...||.++.+       .+-||++++ +-+.+|++-.++.+- ..-. .-..... ..||..+  +..+++.+...+
T Consensus        23 ~l~~pvlI~gf~gaG~vg~lA~~hLi~~l-~~~~vg~id~~~lPp~v~~~-dg~~~~P-~~ly~~~--~~~llll~g~~p   97 (252)
T 3gaa_A           23 NYNNPVVLCGFAGSTPTGVLAASYIVETL-GMHQVAHLISQHIPPVAVFV-GGKLRHP-FRIYANN--SNTVLVAMCEVP   97 (252)
T ss_dssp             GCCSCEEEEECCCSSSHHHHHHHHHHHHH-TCEEEEECCCTTSCCCEECG-GGCCBCS-EEEEECT--TSCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHHHHHc-CCeEEEEEecCCCCcEEEeC-CCeEecc-eEEEEEC--CCCEEEEEecCC
Confidence            3455678887766       235666663 477889888776432 1000 1123333 8888764  345666555556


Q ss_pred             cccccHHHHHHHHHh--cccccCeEEEecccccccccCCCCCChhhhhhhhchhhhccCCCCCccCCCCCCCCccCChHH
Q 024760          116 VAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPA  193 (263)
Q Consensus       116 Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~s~dep~l~~L~TsA~r~~~~~~~~~~p~lp~pnvV~GLpA  193 (263)
                      +|..+.+..++.+++  +.+.-++|++|++++..+..+     .|..+.. |+.+...... ..+++.++.+ .+.|..+
T Consensus        98 ~p~~~~~~f~~~vl~~~~~~gv~~vv~Lgg~~~~~~~~-----~p~v~~~-t~~~l~~~l~-~~g~~~~~~g-~i~G~~g  169 (252)
T 3gaa_A           98 ISSAHIYEISNTLMNWIDQVGASEIVIMEGSPANGIPE-----ERPVFAV-AEKPKLDKFK-KAGIQPADSA-IIAGMGG  169 (252)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTCSEEEEEEEEEESCCCS-----SCCCEEE-CCHHHHHHHH-HTTCEECCCS-EECHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCCCC-----CCceEEE-cCHHHHHHHH-hcCCcccCCC-CcCCHHH
Confidence            899999999999985  233358999999999873211     1111111 4433221100 0124545554 6899999


Q ss_pred             HHhhcccccccceEEE-EeccCCCCCh
Q 024760          194 ALLSRCQLKNIKGTLC-VSWPEFGGSA  219 (263)
Q Consensus       194 AvLs~CQv~~i~a~L~-Vs~p~~~~sv  219 (263)
                      .+|.+|.-++|+|.-+ +..|-+-...
T Consensus       170 ~Ll~~~~~~gi~a~~l~~~vp~y~pdP  196 (252)
T 3gaa_A          170 GILNECLVRKITGLSFITPTSVDIPDP  196 (252)
T ss_dssp             HHHHHHHHHTCEEEEEEEEEESSSCCH
T ss_pred             HHHHHHHHcCCCEEEEEEeCCCCCCCH
Confidence            9999999999999844 4455554443

>4g4s_O Proteasome chaperone 1; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}

Probab=93.47  E-value=0.18  Score=46.36  Aligned_cols=133  Identities=16%  Similarity=0.237  Sum_probs=80.7

Q ss_pred             EEEeecCCCCcEEEEEeecc---cccccHHHHHHHHHhccccc--CeEEEecccccccccCCCCCChhhhhhhhchhhhc
Q 024760           96 NIYAVNDVDGRILVVSVQCS---VAAERSHAVAKVLIGEEIIP--ERVLILDSIQNRNFRGKLPPDETFAFKLETSAARK  170 (263)
Q Consensus        96 ~ly~l~~~~~~vLl~~vq~~---Vp~er~~aWa~~L~~~~l~p--e~VivLds~~~~~yrg~~s~dep~l~~L~TsA~r~  170 (263)
                      .+|+++    +++++.++.-   +|+=-++..||.|.. ++..  .++++|.+...-             -.+      +
T Consensus       123 pi~~~~----d~l~v~i~eN~l~~spI~~N~iaq~L~~-~l~~~~~~i~ilgsSdri-------------~~~------K  178 (276)
T 4g4s_O          123 PIYSFG----KTLLFSMEENFISISPIFGNMISRSIIS-QLAQFSPDIIVIGTSDKI-------------ASM------K  178 (276)
T ss_dssp             CEEESS----SEEEEEECCCTTTCCHHHHHHHHHHHHH-HHHTTCCEEEEEEEETTC-------------SSC------E
T ss_pred             eeEEcC----cEEEEEEecccccccHHHHHHHHHHHHH-HhhccCceEEEecchHHh-------------hhh------h
Confidence            347676    6777776433   566667888999984 7654  367777754432             011      2


Q ss_pred             cCCCCCccCCCCCCCCccCChHHHHhhc---ccccccceEEEEeccC-------CCCChHHHHHHHHhcccCCCcccccC
Q 024760          171 EGPSLLKDVDYFPSGSMVDGLPAALLSR---CQLKNIKGTLCVSWPE-------FGGSAVPFIQSLLQKNVLPGMDFGLN  240 (263)
Q Consensus       171 ~~~~~~~~~p~lp~pnvV~GLpAAvLs~---CQv~~i~a~L~Vs~p~-------~~~svv~~~~s~L~~~v~~~~~~~~~  240 (263)
                      +-   ....|.|-+|.+|+|+.||++|+   |+-.++....+|-=-|       ++...+..+-.++.. +| .+|    
T Consensus       179 ~~---s~~~p~L~PP~fITG~~asllsqL~~~~~~~~~~~~lv~~sEG~~GfEK~~~~~i~~l~~i~~~-~l-~~d----  249 (276)
T 4g4s_O          179 VM---TENECTLQPPEFITGFIGSVLTQLIVGPSKGLKFKCLVAPSEGPNGFEKLSLSDMGSLVDLCGQ-WL-GFE----  249 (276)
T ss_dssp             EE---ESSCCCCCTTCCBCSHHHHHHHHHHSSTTTTCCEEEEEEECBSSTTSCBCCHHHHHHHHHHHHH-HH-TCC----
T ss_pred             hh---ccCCCCcCCcchhhhHHHHHHHhhccccccCcceEEEEecCCCCCCceecchHHHHHHHHHHHH-Hh-cCC----
Confidence            21   11357899999999999999996   7777777766654322       333445555556655 33 122    


Q ss_pred             CCCCCccc----cccccCCC--CCCCCCC
Q 024760          241 NGEDGYSW----FSQNRNRP--FDSELYT  263 (263)
Q Consensus       241 ~~~~~~~~----~~~~~~~~--~ds~ly~  263 (263)
                       . .+|.+    ..|..+-.  .+++||+
T Consensus       250 -~-~~Y~~~~~r~~r~~~~~~gs~sGlYi  276 (276)
T 4g4s_O          250 -P-SRYSEECYRLWRCDSAAIGAQSGLYI  276 (276)
T ss_dssp             -T-THHHHHHHHHHHHSGGGHHHHTTSBC
T ss_pred             -H-HHHHHHHHHHHHHhcccccccccccC
Confidence             1 22443    33555555  4678886

>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis}

Probab=81.80  E-value=1.3  Score=39.06  Aligned_cols=152  Identities=13%  Similarity=0.135  Sum_probs=86.2

Q ss_pred             CCcEEEEEecCC----------ceeeeeccCCCceeeeeeecCC-------CC---CCCCCCCCCCCCceEEEeecCCCC
Q 024760           46 RPTLLIVAISSP----------SLFVFHHLSSKTLIGSLILPEI-------PF---SGNSIEPSLTDKSCNIYAVNDVDG  105 (263)
Q Consensus        46 ~pslLIiAvs~~----------S~~ll~~i~~~~lvGsl~lpe~-------~~---~g~s~~ps~~d~~c~ly~l~~~~~  105 (263)
                      +--.||.|+.+.          +-||+.++ +-+.+|++-..+.       |.   .+......-....-.+|+.+|..+
T Consensus         4 ~~pvlI~gf~G~~DAG~vg~~a~~hL~~~l-~~~~va~id~d~~~dy~~~rP~v~~~~g~~~~~~p~~~~~~~~~~d~~~   82 (250)
T 3mnf_A            4 IDPVMVAAFEGWNDAGDAASTAVAHLDREW-KGEVFAALDAEDYYDFQVNRPTVWLDGGVRKITWPTTRLSVVRVGGEKP   82 (250)
T ss_dssp             -CCEEEEEEESTTBTTSHHHHHHHHHHHHT-TCEEEEECCGGGTCCTTTSCCEEEEETTEEEEECCCEEEEEEEEESSSE
T ss_pred             CCCEEEEeCCCCCccChHHHHHHHHHHHHc-CCeEEEEEechhccccCCCCCEEEEeCCEEEeecCCceEEEEecCCCCC
Confidence            334789999553          36677663 4677888776542       21   111000000122445588764333


Q ss_pred             cEEEEEeecccccccHHHHHHHHHh--cccccCeEEEecccccccccCCC------CCChhhhhhhhchhhhccCCCCCc
Q 024760          106 RILVVSVQCSVAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKL------PPDETFAFKLETSAARKEGPSLLK  177 (263)
Q Consensus       106 ~vLl~~vq~~Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~------s~dep~l~~L~TsA~r~~~~~~~~  177 (263)
                      .-++.. +...|..+.+..++.+++  +.+.-++|+.|.+++..---++-      +.+..++..++.            
T Consensus        83 ~~~lll-~g~eP~~~w~~f~~~vl~~a~~~gv~~iv~lgg~~~~~phtrp~~v~~~at~~~l~~~~~~------------  149 (250)
T 3mnf_A           83 RDLVLV-RGIEPSMRWRSFCNELLAFAHELGVELVVVLGALLGDTPHTRPVPVSGVTSDPDLARTMDL------------  149 (250)
T ss_dssp             EEEEEE-EEECCSSCHHHHHHHHHHHHHHHTCCEEEEEEEEEESCCTTSCCCEEEEECCHHHHHHSCC------------
T ss_pred             CcEEEE-ECCCCchHHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCcceEEEECCHHHHHhhhc------------
Confidence            333333 566788888888988885  23345899999999654221211      223333322221            


Q ss_pred             cCCCCCCCCccCChHHHHhhcccccccceEEE-EeccC
Q 024760          178 DVDYFPSGSMVDGLPAALLSRCQLKNIKGTLC-VSWPE  214 (263)
Q Consensus       178 ~~p~lp~pnvV~GLpAAvLs~CQv~~i~a~L~-Vs~p~  214 (263)
                         ..+.=...+|+.+.++.+|..++|+|.-+ +..|-
T Consensus       150 ---~~~~~~~p~gi~glL~~~~~~~gi~a~~l~~~vp~  184 (250)
T 3mnf_A          150 ---EETKYEGPTGIVGILQEACTHAGVPAVSLWAAVPH  184 (250)
T ss_dssp             ---CCCCCCSCCCHHHHHHHHHHHHTCCEEEEEEEEEG
T ss_pred             ---cccccccCccHHHHHHHHHHHCCCCEEEEEEeCCc
Confidence               11122236899999999999999999844 33443

>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}

Probab=80.24  E-value=4.8  Score=37.33  Aligned_cols=152  Identities=9%  Similarity=0.051  Sum_probs=91.4

Q ss_pred             CCCcEEEEEecCC----------ceeeeeccCCCceeeeeeecCC-------C---CCCCCCCCCCCCCceEEEeecCCC
Q 024760           45 LRPTLLIVAISSP----------SLFVFHHLSSKTLIGSLILPEI-------P---FSGNSIEPSLTDKSCNIYAVNDVD  104 (263)
Q Consensus        45 L~pslLIiAvs~~----------S~~ll~~i~~~~lvGsl~lpe~-------~---~~g~s~~ps~~d~~c~ly~l~~~~  104 (263)
                      |+--.||.|+.+.          +-||+.++ .-+.+|++-..+.       |   +..... .........||..+++.
T Consensus        26 l~~pvLI~af~G~~DAG~vg~~A~~hLi~~l-~~~~va~~d~d~l~Dyr~~RP~v~~~~d~~-~~~~~P~~~ly~~~d~~  103 (325)
T 3e35_A           26 SAGLVMLYHFDGYIDAGETGDQIVDQVLDSL-PHQVVARFDHDRLVDYRARRPLLTFKRDTW-SDYEEPTIEVRLVQDAT  103 (325)
T ss_dssp             TTCEEEEEEEESSCCGGGHHHHHHHHHHHHS-CEEEEEEECHHHHSCTTTSCCCEEEETTEE-EEECCCCCEEEEEECTT
T ss_pred             cCCCEEEEeCCCCCccCHHHHHHHHHHHHHc-CCeEEEEEeccccccccCCCCcEEEEcCcc-eeeecCCeEEEEecCCC
Confidence            3445889999662          35666663 3677888776543       2   110000 11333467889888544


Q ss_pred             CcEEEEEeecccccccHHHHHHHHHh--cccccCeEEEecccccccccCCC------CCChhhhhhhhchhhhccCCCCC
Q 024760          105 GRILVVSVQCSVAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKL------PPDETFAFKLETSAARKEGPSLL  176 (263)
Q Consensus       105 ~~vLl~~vq~~Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~------s~dep~l~~L~TsA~r~~~~~~~  176 (263)
                      +.-++... ...|.-+-...++.+++  +.+..++|+.|.+++...--++-      +.+..++..++            
T Consensus       104 ~~~~llL~-G~eP~~~w~~f~~avl~~a~~~gV~~vv~Lggip~~vpHtRP~~V~~~at~~el~~~~~------------  170 (325)
T 3e35_A          104 GAPFLFLS-GPEPDVEWERFAAAVGQIVERLGVRLSVSFHGIPMGVPHTRPVGITPHGSRTDLVPGHR------------  170 (325)
T ss_dssp             CCEEEEEE-EECCSSCHHHHHHHHHHHHHHTTEEEEEEEEEEEESCCTTSCCCEEEEESCGGGCC---------------
T ss_pred             CCcEEEEE-CCCCcchHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCceeEEEeCCHHHHHhhc------------
Confidence            33333333 47888888888988885  33345789999999977433321      22222222222            


Q ss_pred             ccCCCCCCCCccCChHHHHhhcccccccceE-EEEeccC
Q 024760          177 KDVDYFPSGSMVDGLPAALLSRCQLKNIKGT-LCVSWPE  214 (263)
Q Consensus       177 ~~~p~lp~pnvV~GLpAAvLs~CQv~~i~a~-L~Vs~p~  214 (263)
                         ..+..-...+|+.+.++..|.-++|.+. |.+..|.
T Consensus       171 ---~~~~~~~gp~Gi~glL~~~~~~~Gi~a~~l~~~vPh  206 (325)
T 3e35_A          171 ---SPFEEAQVPGSAEALVEYRLAQAGHDVLGVAAHVPH  206 (325)
T ss_dssp             -----CCCCCCCCCHHHHHHHHHHHTTCCEEEEEEEEEG
T ss_pred             ---cccccCCCcccHHHHHHHHHHHCCCCeEEEEEEcCc
Confidence               1233445689999999999999999997 4444553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d2p90a1	269	Hypothetical protein Cgl1923 {Corynebacterium glut	91.05

>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Cgl1923-like
family: Cgl1923-like
domain: Hypothetical protein Cgl1923
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=91.05  E-value=0.19  Score=42.13  Aligned_cols=156  Identities=15%  Similarity=0.118  Sum_probs=90.3

Q ss_pred             CCcEEEEEecC----------CceeeeeccCCCceeeeeeecC----------CCCCCCCCCCCCCCCceEEEeecCCCC
Q 024760           46 RPTLLIVAISS----------PSLFVFHHLSSKTLIGSLILPE----------IPFSGNSIEPSLTDKSCNIYAVNDVDG  105 (263)
Q Consensus        46 ~pslLIiAvs~----------~S~~ll~~i~~~~lvGsl~lpe----------~~~~g~s~~ps~~d~~c~ly~l~~~~~  105 (263)
                      +-.+||+|+.+          .+-||+.+ -+-+.+|.+--++          +.+..... .........+|...+.++
T Consensus        19 ~~p~li~~f~G~~DaG~vg~ia~~~Li~~-l~~~~v~~i~sd~f~d~~~~rP~v~~~~~~~-~~~~~p~~~~~~~~~~~~   96 (269)
T d2p90a1          19 GGPTLIVALQGYADAGHAVESSSSHLMDA-LDHRLIASFNNDELIDYRSRRPVVVIEHNEV-TSMDELNLGLHVVRDNDN   96 (269)
T ss_dssp             SCCEEEEEEESSSBGGGHHHHHHHHHHHH-SCEEEEEEECHHHHCBHHHHCCCEEECSSSE-EEECCCCCEEEEEECTTC
T ss_pred             CCCEEEEeCCCCccHhHHHHHHHHHHHHH-cCCeEEEEEecccccccCCCCCEEEEECCeE-EecccccccceeeecCCC
Confidence            34489999976          23667766 3478889876432          22221111 112222446666664444


Q ss_pred             cEEEEEeecccccccHHHHHHHHHh--cccccCeEEEecccccccccCCCCCChhhhhhhhchh--hhccCCCCCccCCC
Q 024760          106 RILVVSVQCSVAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSA--ARKEGPSLLKDVDY  181 (263)
Q Consensus       106 ~vLl~~vq~~Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~s~dep~l~~L~TsA--~r~~~~~~~~~~p~  181 (263)
                      .-++.. +..+|..+-...++.++.  +....++|+.|+++....         |..+.....+  ....... . ..-.
T Consensus        97 ~~illl-~g~eP~~~~~~~a~~il~~~~~~gv~~ii~lgg~~~~~---------phtr~~~~~~~~~~~~~~~-~-~~~~  164 (269)
T d2p90a1          97 KPFLML-SGPEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTV---------PHTRPTVVTAHGNSTDRLK-D-QVSL  164 (269)
T ss_dssp             CEEEEE-EEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESC---------CTTSCCCEEEEESSGGGCS-S-CCCC
T ss_pred             CeEEEE-ecCCCchhHHHHHHHHHHHHHHcCCcEEEEcCcccCCC---------CCccceEEEEecCcHHHHH-h-cccc
Confidence            333333 457888887778888764  344568999999987762         1111111111  1111100 0 0112


Q ss_pred             CCCCCccCChHHHHhhcccccccceE-EEEeccCC
Q 024760          182 FPSGSMVDGLPAALLSRCQLKNIKGT-LCVSWPEF  215 (263)
Q Consensus       182 lp~pnvV~GLpAAvLs~CQv~~i~a~-L~Vs~p~~  215 (263)
                      .+.....+|+++.++..|..++|++. +++..|.+
T Consensus       165 ~~~~~~~~gi~g~l~~~~~~~gi~~i~l~a~vp~y  199 (269)
T d2p90a1         165 DTRMTVPGSASLMLEKLLKDKGKNVSGYTVHVPHY  199 (269)
T ss_dssp             CCCEEECCCHHHHHHHHHHHTTCCEEEEEEEEEGG
T ss_pred             ccccCccchhHHHHHHHHHhcCCCeEEEEEEcCcc
Confidence            34566789999999999999999998 55556654