Citrus Sinensis ID: 024853

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWKSALRDIIEEDLDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFLSECGMSKWGYWRGGSPE
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHcccEEEHHHHccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHcccccccccccccHHHHHHccccccccccccccccHHHHHHcHHHEEccccccccHHHHHHccccccccccEEEEEHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHccccEEcHHHHccccEccEEEEccccccccccccHHHcccEccEEccccHHHHHHccccEEEccccccEEEHHHHccccHcHHcccccccccccccHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mtfggrgetlTSISKQYGVSVYSIAAVnknivdvdlvfegqrlnipsSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQIthrlphiwrnrlpsfdlkeTLQHSLNIfygpldkkyFVMEIthglpqakttgYFLVVVPLIAFCIRCMIGAfhtriaggsghrvangskgrhpgsksVRWKSALRDIIEEdldsgsrprtndpveeqdqaqplisfeessHAYRKLEDDYEKFLSEcgmskwgywrggspe
Flexible Loop (DISEMBL)
mtfggrgetltsiskqyGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNvissfdlkeihrRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGhrvangskgrhpgsksvrwKSALRDIIEEdldsgsrprtndpveeqdqaqplisfeesshAYRKLEDDYEKFLSecgmskwgywrggspe
Low Complexity Region (SEG)
MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWKSALRDIIEEDLDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFLSECGMSKWGYWRGGSPE
Disordered region (IsUnstruct)
***********SISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGG******************************************************************LEDDYEKFLSECGMSKWGYWR*****
Disordered Region (DISOPRED)
************ISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRI**************************AL************************************HAYRKLEDDYEKFLSECGMSKWGYWRGG***
Disordered Region (DISEMBL)
********TLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGS*******************WKSALRDIIEEDLD****************AQPLISFEESSHAYRKLEDDYEKFLSECGMSKWGYWRGGSPE
Disordered Region (DISPRO)
*********LTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHR*A*************R**S*****IE*D*********************LISFEESSHAYRKLEDDYEKFLSECGMSKWGYWR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWKSALRDIIEEDLDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFLSECGMSKWGYWRGGSPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
224135739	286	predicted protein [Populus trichocarpa]	0.808	0.737	0.482	8e-51
296089404	250	unnamed protein product [Vitis vinifera]	0.624	0.652	0.475	3e-38
449518627	303	PREDICTED: uncharacterized LOC101208955	0.835	0.719	0.400	5e-33
449447773	413	PREDICTED: uncharacterized protein LOC10	0.842	0.532	0.4	5e-32
255570899	259	conserved hypothetical protein [Ricinus	0.628	0.633	0.402	7e-28
359493361	168	PREDICTED: uncharacterized protein LOC10	0.356	0.553	0.567	4e-18
297809195	249	hypothetical protein ARALYDRAFT_327172 [	0.716	0.751	0.263	2e-10
42566376	250	uncharacterized protein [Arabidopsis tha	0.402	0.42	0.321	2e-06
30681263	212	uncharacterized protein [Arabidopsis tha	0.363	0.448	0.319	1e-05
4539000	208	putative protein [Arabidopsis thaliana]	0.356	0.447	0.330	3e-05

>gi|224135739|ref|XP_002327292.1| predicted protein [Populus trichocarpa] gi|222835662|gb|EEE74097.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 145/253 (57%), Gaps = 42/253 (16%)

Query: 7   GETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDL 66
           GETLTSISKQYGVS+YS+AA NKNI+DVDLVFEGQ LNIP++     Q         + +
Sbjct: 74  GETLTSISKQYGVSIYSVAAANKNILDVDLVFEGQLLNIPAAAPAGTQV--------YQI 125

Query: 67  KEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKY 126
           K+                                  PSFD  E LQ+ + I  G L++K 
Sbjct: 126 KKCES-------------------------------PSFDQLERLQNFMKIMDGVLNQKP 154

Query: 127 FVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSK 186
           F+   T  LP AK TGYFLV+VP +AFCIRC+IGAFHTR     G + +N S+  H   +
Sbjct: 155 FITVTTLRLPHAKATGYFLVLVPALAFCIRCIIGAFHTRARRNLGCQASNESRRHHDVPE 214

Query: 187 SVRWKSALRDIIEEDLDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFLSE 246
           S RWK AL DI E D   G  P  N      DQ Q   SFEE SHAY KLE +Y+KFLSE
Sbjct: 215 SKRWKHALSDIREPDNLDG-EPILNSTGTSADQDQN--SFEEVSHAYDKLEHEYQKFLSE 271

Query: 247 CGMSKWGYWRGGS 259
           CG+S  GYWRGGS
Sbjct: 272 CGISNSGYWRGGS 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089404|emb|CBI39223.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 119/204 (58%), Gaps = 41/204 (20%)

Query: 7   GETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDL 66
           GETL+SISKQYGVS+YSIAA NKNI D+DLVF GQ LNIPSS   E Q         F  
Sbjct: 66  GETLSSISKQYGVSIYSIAAANKNIEDIDLVFCGQHLNIPSSAVGETQ--------KFQT 117

Query: 67  KEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKY 126
           +                               +++L SFD  +  QHSL +  G L++K 
Sbjct: 118 E-------------------------------KSKLSSFDTLKRHQHSLEVLGGRLNQKL 146

Query: 127 FVMEIT-HGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGS 185
             + ++ H L  AK TGYFLV+VPLIAFCIRC+IGAF  R+ G   H+  N S+  + GS
Sbjct: 147 CTVALSFHSLSHAKATGYFLVLVPLIAFCIRCIIGAFQNRVVGDLRHQAVNESEVDYHGS 206

Query: 186 KSVRWKSALRDIIEED-LDSGSRP 208
           KSVRWKSAL DI E D LD+G +P
Sbjct: 207 KSVRWKSALDDIREPDTLDTGLQP 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518627|ref|XP_004166338.1| PREDICTED: uncharacterized LOC101208955 [Cucumis sativus]

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/257 (40%), Positives = 138/257 (53%), Gaps = 39/257 (15%)

Query: 7   GETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDL 66
            E+LTS S Q G   +SI   NK I+D DL  +GQ + I  + RE L   ++  I S  L
Sbjct: 76  NESLTSTSNQNGDPPHSIVMANKKIMDTDLEQKGQNIKI-QNPRELLVELLQKEIDSSKL 134

Query: 67  KEIHRRSLNVFYGRLDKRHISMQITHRLPH---IWRNRLPSFDLKETLQHSLNIFYGPLD 123
                     FY            T   P+   + RN   +F L+E LQ +LN     + 
Sbjct: 135 ----------FY------------TSHFPNFDIMIRN---AFQLEEKLQSALNGLR--IY 167

Query: 124 KKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHP 183
           KK F +  +H  P A+TT  F+V+VPL+ FC RC+IGA + R  G    +  +  +G   
Sbjct: 168 KKLFALASSHQ-PPARTTS-FIVLVPLVIFCARCIIGASYARAFGTLKLKAIDKQEGERR 225

Query: 184 GSKSVRWKSALRDIIEED-LDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEK 242
             +S  W+SALRDI E D LD  +   +  P E++      IS EE SHAY+KL+ DYEK
Sbjct: 226 KFRSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQ-----ISVEELSHAYKKLDQDYEK 280

Query: 243 FLSECGMSKWGYWRGGS 259
           FLSECG+SKWGYWRGG+
Sbjct: 281 FLSECGLSKWGYWRGGT 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447773|ref|XP_004141642.1| PREDICTED: uncharacterized protein LOC101208955 [Cucumis sativus]

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/255 (40%), Positives = 135/255 (52%), Gaps = 35/255 (13%)

Query: 7   GETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP-SSVREELQATVKNVISSFD 65
            E+LTS S Q G   +SI   NK I+D DL  E +R NI   + RE L   ++  I S  
Sbjct: 186 NESLTSTSNQNGDPPHSIVMANKKIMDTDL--EQKRQNIKIQNPRELLVELLQKEIDSSK 243

Query: 66  LKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGPLDKK 125
           L          FY            T   P+       +F L+E LQ +LN     + KK
Sbjct: 244 L----------FY------------TSHFPNFDIMIRNAFQLEEKLQSALNGLR--IYKK 279

Query: 126 YFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGS 185
            F +  +H  P A+TT  F+V+VPL+ FC RC+IGA + R  G    +  +  +G     
Sbjct: 280 LFALASSHQ-PPARTTS-FIVLVPLVIFCARCIIGASYARAFGTLKLKAIDKQEGERRKF 337

Query: 186 KSVRWKSALRDIIEED-LDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFL 244
           +S  W+SALRDI E D LD  +   +  P E++      IS EE SHAY+KL+ DYEKFL
Sbjct: 338 RSGHWRSALRDIRELDGLDCEAPIDSTSPSEDEQ-----ISVEELSHAYKKLDQDYEKFL 392

Query: 245 SECGMSKWGYWRGGS 259
           SECG+SKWGYWRGG+
Sbjct: 393 SECGLSKWGYWRGGT 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570899|ref|XP_002526401.1| conserved hypothetical protein [Ricinus communis] gi|223534263|gb|EEF35977.1| conserved hypothetical protein [Ricinus communis]

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 107/206 (51%), Gaps = 42/206 (20%)

Query: 2   TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVI 61
           +F  RGE L SIS+ YG S + I   NKNI DVD + +GQ  NIP+ V  + Q       
Sbjct: 59  SFSCRGEKLNSISRHYGESFHPIVDSNKNISDVDFLCKGQLPNIPAFVPADCQ------- 111

Query: 62  SSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGP 121
               L +I     + FY                             KE  + S+ I  G 
Sbjct: 112 ----LYQIKISGKSSFYQ----------------------------KERPRSSMAILDGF 139

Query: 122 LDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGR 181
           L +K F++  +H LP AK+TGYFLV+VPLIAFCI C++GAFHTR+    G R  +  K R
Sbjct: 140 LKQKPFILLSSHSLPHAKSTGYFLVLVPLIAFCITCILGAFHTRVPSDMGRRAVD--KSR 197

Query: 182 HPGSKSVRWKSALRDIIEED-LDSGS 206
             G  S+RWK+AL DI E+D LDS S
Sbjct: 198 KKGHNSMRWKNALSDIKEQDNLDSES 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493361|ref|XP_002278178.2| PREDICTED: uncharacterized protein LOC100241456 [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 4/97 (4%)

Query: 7   GETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQ--ATVKNVISSF 64
           GETL+SISKQYGVS+YSIAA NKNI D+DLVF GQ LNIPSS   E Q   T K+ +SSF
Sbjct: 66  GETLSSISKQYGVSIYSIAAANKNIEDIDLVFCGQHLNIPSSAVGETQKFQTEKSKLSSF 125

Query: 65  DLKEIHRRSLNVFYGRLDKRHISMQIT-HRLPH-IWR 99
           D  + H+ SL V  GRL+++  ++ ++ H L H  WR
Sbjct: 126 DTLKRHQHSLEVLGGRLNQKLCTVALSFHSLSHSCWR 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809195|ref|XP_002872481.1| hypothetical protein ARALYDRAFT_327172 [Arabidopsis lyrata subsp. lyrata] gi|297318318|gb|EFH48740.1| hypothetical protein ARALYDRAFT_327172 [Arabidopsis lyrata subsp. lyrata]

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 67/254 (26%)

Query: 3   FGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLN-IPSSVREELQATVKNVI 61
           F  R E+L  I KQYGVSV +      +    DL FE +  + +PSSV ++ +       
Sbjct: 57  FAKRSESLRRILKQYGVSVETPEENKTSSRLDDLNFEEKHHDDVPSSVIDDAK------- 109

Query: 62  SSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIWRNRLPSFDLKETLQHSLNIFYGP 121
                                     M  T  LP          DL++  ++S  +    
Sbjct: 110 --------------------------MNTTEELP----------DLRQQEKYSETVSTA- 132

Query: 122 LDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGR 181
                      H LP   T   F  ++P++ FCI C+IG  HT I+          S+  
Sbjct: 133 ---DNLSGHDHHNLPHLNTGVLFTSLLPVLGFCIVCIIGTLHTIIS-------RKPSQDH 182

Query: 182 HPGSKSVRWKSALRD----IIEEDLDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLE 237
           H GSK+ RW++AL D    +  ++ DS    R     +E +        +E + AY ++E
Sbjct: 183 HHGSKTTRWRTALIDWNEPLASDEHDSSPEYRVASTNQEAN--------DEMNEAYNRVE 234

Query: 238 DDYEKFLSECGMSK 251
            +Y++FL ECG+S+
Sbjct: 235 LEYKRFLLECGVSE 248

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42566376|ref|NP_192735.2| uncharacterized protein [Arabidopsis thaliana] gi|50253440|gb|AAT71922.1| At4g09970 [Arabidopsis thaliana] gi|58331783|gb|AAW70389.1| At4g09970 [Arabidopsis thaliana] gi|332657422|gb|AEE82822.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 135 LPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWKSAL 194
           LP   T      ++P++ FCI C+IG  HT I+  +       S+G H GS+  RW++AL
Sbjct: 143 LPHLNTGVLLTSLLPVLGFCIICIIGTLHTIISRKT-------SQGHHHGSE--RWRTAL 193

Query: 195 RDIIEEDLDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFLSECGM 249
            D   E L S      +         Q   + +E + AY ++E +Y++FL ECG+
Sbjct: 194 MD-WNEPLASDGHDSMSPEYRVASTNQEATATDEMNEAYSRVELEYKRFLLECGV 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681263|ref|NP_849352.1| uncharacterized protein [Arabidopsis thaliana] gi|332657421|gb|AEE82821.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 24/119 (20%)

Query: 135 LPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWKSAL 194
           LP   T      ++P++ FCI C+IG  HT I+  +       S+G H GS+  RW++AL
Sbjct: 111 LPHLNTGVLLTSLLPVLGFCIICIIGTLHTIISRKT-------SQGHHHGSE--RWRTAL 161

Query: 195 RDIIEEDLDSGSRPRTNDPVEEQDQAQP----LISFEESSHAYRKLEDDYEKFLSECGM 249
            D  E        P  +D     D   P      + +E + AY ++E +Y++FL ECG+
Sbjct: 162 MDWNE--------PLASDG---HDSMSPEYREATATDEMNEAYSRVELEYKRFLLECGV 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539000|emb|CAB39621.1| putative protein [Arabidopsis thaliana] gi|7267693|emb|CAB78120.1| putative protein [Arabidopsis thaliana]

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 10/103 (9%)

Query: 147 VVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWKSALRDIIEEDLDSGS 206
           ++P++ FCI C+IG  HT I+  +       S+G H GS+  RW++AL D   E L S  
Sbjct: 113 LLPVLGFCIICIIGTLHTIISRKT-------SQGHHHGSE--RWRTALMD-WNEPLASDG 162

Query: 207 RPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFLSECGM 249
               +         Q   + +E + AY ++E +Y++FL ECG+
Sbjct: 163 HDSMSPEYRVASTNQEATATDEMNEAYSRVELEYKRFLLECGV 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2140603	250	AT4G09970 [Arabidopsis thalian	0.409	0.428	0.316	5.2e-11

TAIR|locus:2140603 AT4G09970 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
 Identities = 37/117 (31%), Positives = 59/117 (50%)

Query:   135 LPQAKTTGYFLVVVPLIAFCIRCMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWKSAL 194
             LP   T      ++P++ FCI C+IG  HT I+  +       S+G H GS+  RW++AL
Sbjct:   143 LPHLNTGVLLTSLLPVLGFCIICIIGTLHTIISRKT-------SQGHHHGSE--RWRTAL 193

Query:   195 RDIIEEDLDSGSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFLSECGMSK 251
              D   E L S      +         Q   + +E + AY ++E +Y++FL ECG+ +
Sbjct:   194 MDW-NEPLASDGHDSMSPEYRVASTNQEATATDEMNEAYSRVELEYKRFLLECGVGE 249

GO:0005634 "nucleus" evidence=ISM

GO:0007623 "circadian rhythm" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00410184 hypothetical protein (286 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
cd00118	45	cd00118, LysM, Lysine Motif is a small domain invo	5e-08
smart00257	44	smart00257, LysM, Lysin motif	2e-07
pfam01476	43	pfam01476, LysM, LysM domain	6e-07
TIGR02899	44	TIGR02899, spore_safA, spore coat assembly protein	2e-06

>gnl|CDD|212030 cd00118, LysM, Lysine Motif is a small domain involved in binding peptidoglycan

 Score = 47.9 bits (115), Expect = 5e-08
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 6  RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNI 45
           G+TL SI+K+YGV+V  +AA N  +++ D ++ GQ+L I
Sbjct: 7  PGDTLWSIAKKYGVTVEELAAAN-PLINPDCIYPGQKLKI 45

LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. Length = 45

>gnl|CDD|197609 smart00257, LysM, Lysin motif

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 18/40 (45%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 6  RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNI 45
          +G+TL+SI+++YG+SV  +  +N NI+D D +  GQ+L I
Sbjct: 6  KGDTLSSIARRYGISVSDLLELN-NILDPDNLQVGQKLKI 44

Length = 44

>gnl|CDD|144899 pfam01476, LysM, LysM domain

 Score = 44.7 bits (107), Expect = 6e-07
 Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 6  RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
          +G+TL+SI+K+YG++V  +A +N   +    ++ GQ+L IP
Sbjct: 5  KGDTLSSIAKRYGITVEELAELNG--LSSPNLYVGQKLKIP 43

The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. Length = 43

>gnl|CDD|131945 TIGR02899, spore_safA, spore coat assembly protein SafA

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 6  RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS 47
          +G+TL  I+K+YGV    +   N  + + +L++ G ++ IPS
Sbjct: 3  KGDTLWKIAKKYGVDFDELIQANPQLSNPNLIYPGMKIKIPS 44

SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins [Cellular processes, Sporulation and germination]. Length = 44

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
PF01476	44	LysM: LysM domain; InterPro: IPR018392 This domain	99.45
PRK06347	592	autolysin; Reviewed	99.28
TIGR02899	44	spore_safA spore coat assembly protein SafA. in wh	99.2
PRK10783	456	mltD membrane-bound lytic murein transglycosylase	99.09
PRK06347	592	autolysin; Reviewed	99.07
cd00118	46	LysM Lysin domain, found in a variety of enzymes i	99.05
PRK14125	103	cell division suppressor protein YneA; Provisional	99.04
PRK10871	319	nlpD lipoprotein NlpD; Provisional	98.91
smart00257	44	LysM Lysin motif.	98.75
PRK13914	481	invasion associated secreted endopeptidase; Provis	98.61
PRK13914	481	invasion associated secreted endopeptidase; Provis	98.48
COG1388	124	LytE FOG: LysM repeat [Cell envelope biogenesis, o	98.48
TIGR03505	74	FimV_core FimV N-terminal domain. This region is f	97.76
COG3858	423	Predicted glycosyl hydrolase [General function pre	97.59
COG1388	124	LytE FOG: LysM repeat [Cell envelope biogenesis, o	97.51
PF04225	85	OapA: Opacity-associated protein A LysM-like domai	97.5
PRK10783	456	mltD membrane-bound lytic murein transglycosylase	97.49
PRK10190	310	L,D-transpeptidase; Provisional	97.32
PRK10260	306	L,D-transpeptidase; Provisional	97.29
PF05489	60	Phage_tail_X: Phage Tail Protein X; InterPro: IPR0	96.8
COG3858	423	Predicted glycosyl hydrolase [General function pre	95.6
PRK11649	439	putative peptidase; Provisional	95.43
COG3170	755	FimV Tfp pilus assembly protein FimV [Cell motilit	94.88
PRK11198	147	LysM domain/BON superfamily protein; Provisional	94.43
COG0739	277	NlpD Membrane proteins related to metalloendopepti	87.59
COG5004	70	P2-like prophage tail protein X [General function	83.02

>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []

Probab=99.45  E-value=6.6e-14  Score=93.76  Aligned_cols=44  Identities=41%  Similarity=0.545  Sum_probs=37.4

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeC
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP   46 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP   46 (261)
                      |+|++|||||+||++||+++++|+++||++...+ |.+||+|+||
T Consensus         1 y~V~~gDtl~~IA~~~~~~~~~l~~~N~~~~~~~-l~~G~~l~iP   44 (44)
T PF01476_consen    1 YTVQPGDTLWSIAKRYGISVDELMELNPNIDSDN-LQPGQKLCIP   44 (44)
T ss_dssp             EEE-TT--HHHHHHHTTS-HHHHHHHCCTTHGGC-GGTTEEEEEC
T ss_pred             CEECcCCcHHHHHhhhhhhHhHHHHhcCCCCccc-CCCCCEEEeC
Confidence            8999999999999999999999999999886544 9999999998

This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.

>PRK06347 autolysin; Reviewed

Probab=99.28  E-value=3.4e-12  Score=128.57  Aligned_cols=96  Identities=15%  Similarity=0.227  Sum_probs=72.7

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCCcchhhhhhh---hhccccchhhHHhhhhhhhH
Q 024853            1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATV---KNVISSFDLKEIHRRSLNVF   77 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~~~q~t~---~~~~s~y~i~~~~~~s~~tl   77 (261)
                      .|+|++|||||+||++|||++++|++|| ++. .+.|++||.|.||.........+.   ....+.-....+...+++++
T Consensus       481 ~YtVk~GDTL~sIAkkygVSv~~L~~~N-~l~-s~~L~~GQ~L~Ip~~~~~s~~~t~~~s~~~~~~~~~~~Y~Vk~GDTL  558 (592)
T PRK06347        481 VYTVAKGDSLWRIANNNKVTIANLKSWN-NLK-SDFIYPGQKLKVSAGSTTNNTNTAKPSTNKPSNSTVKTYTVKKGDSL  558 (592)
T ss_pred             eeeecCCCCHHHHHHHHCCCHHHHHHhc-CCC-cccccCCcEEEEecCcccccccccCCccCCccCccceeeecCCCCcH
Confidence            4899999999999999999999999999 575 578999999999975332211110   01111111223455789999


Q ss_pred             HhhhhhcccchhhhccCCccc
Q 024853           78 YGRLDKRHISMQITHRLPHIW   98 (261)
Q Consensus        78 y~~~~k~gism~~l~~lp~i~   98 (261)
                      +++++++|+++..|..+|.+.
T Consensus       559 ~sIA~KygvSv~~L~~~N~L~  579 (592)
T PRK06347        559 WAISRQYKTTVDNIKAWNKLT  579 (592)
T ss_pred             HHHHHHhCCCHHHHHHhcCCC
Confidence            999999999999999998765

>TIGR02899 spore_safA spore coat assembly protein SafA

Probab=99.20  E-value=2.7e-11  Score=79.52  Aligned_cols=44  Identities=32%  Similarity=0.637  Sum_probs=40.1

Q ss_pred             ecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCC
Q 024853            4 GGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS   47 (261)
Q Consensus         4 Vq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~   47 (261)
                      |++|||||+||++||+++++|.++||.+.+++.+.+||.|.||.
T Consensus         1 v~~gdtl~~IA~~~~~~~~~l~~~N~~~~~~~~~~~g~~l~ip~   44 (44)
T TIGR02899         1 VQKGDTLWKIAKKYGVDFDELIQANPQLSNPNLIYPGMKIKIPS   44 (44)
T ss_pred             CCCCCCHHHHHHHHCcCHHHHHHHhhcCCCCCCcCCCCEEecCC
Confidence            68999999999999999999999997665667899999999983

in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional

Probab=99.09  E-value=1.1e-10  Score=114.43  Aligned_cols=89  Identities=18%  Similarity=0.122  Sum_probs=69.9

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCCcchhhhhhhhhccccchhhHHhhhhhhhHHhhh
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRL   81 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~~~q~t~~~~~s~y~i~~~~~~s~~tly~~~   81 (261)
                      |+|++|||||+||++||+++.+|.++| ++.. +.|.+||.|.||.........     .. -....+....++||++++
T Consensus       346 y~Vk~GDTL~sIA~r~gvs~~~L~~~N-~l~~-~~L~~Gq~L~Ip~~~~~~~~~-----~~-~~~~~Y~Vr~GDTL~sIA  417 (456)
T PRK10783        346 YKVRSGDTLSGIASRLNVSTKDLQQWN-NLRG-SKLKVGQTLTIGAGSSAQRLA-----NN-SDSITYRVRKGDSLSSIA  417 (456)
T ss_pred             EEECCCCcHHHHHHHHCcCHHHHHHHc-CCCc-ccCCCCCEEEecCCccccccc-----cc-ccceeEEeCCCCCHHHHH
Confidence            899999999999999999999999999 5754 789999999999753321100     00 001123457899999999


Q ss_pred             hhcccchhhhccCCccc
Q 024853           82 DKRHISMQITHRLPHIW   98 (261)
Q Consensus        82 ~k~gism~~l~~lp~i~   98 (261)
                      +++|++++.+.++|.+.
T Consensus       418 ~kygVtv~~L~~~N~l~  434 (456)
T PRK10783        418 KRHGVNIKDVMRWNSDT  434 (456)
T ss_pred             HHhCCCHHHHHHhcCCC
Confidence            99999999999998543

>PRK06347 autolysin; Reviewed

Probab=99.07  E-value=1.2e-10  Score=117.49  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=70.2

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCCcchhhhhhhh------------hccccchhhHH
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVK------------NVISSFDLKEI   69 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~~~q~t~~------------~~~s~y~i~~~   69 (261)
                      |+|++|||||.||++||+++++|+++| ++. .+.|++||.|+||.........+..            .....+  ..+
T Consensus       333 Y~V~sGDTL~~IA~rygvSv~eL~~~N-~l~-~d~L~~Gq~L~VP~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~--~~y  408 (592)
T PRK06347        333 YTVVKGDSLWRIANNHKVTVANLKAWN-NLK-SDFIYPGQKLKVSAGSTTSDTNTSKPSTGTSTSKPSTGTSTNA--KVY  408 (592)
T ss_pred             EEeCCCCCHHHHHHHhCCCHHHHHHHh-CCC-ccccccCcEEEEeccccccccccccccccccccccccccccCc--eeE
Confidence            899999999999999999999999999 685 5899999999999642211100000            001111  123


Q ss_pred             hhhhhhhHHhhhhhcccchhhhccCCccc
Q 024853           70 HRRSLNVFYGRLDKRHISMQITHRLPHIW   98 (261)
Q Consensus        70 ~~~s~~tly~~~~k~gism~~l~~lp~i~   98 (261)
                      ....+++|+++++++|+++..+..++.+.
T Consensus       409 tVk~GDTL~sIA~kygVSv~~L~~~N~l~  437 (592)
T PRK06347        409 TVVKGDSLWRIANNNKVTIANLKSWNNLK  437 (592)
T ss_pred             EecCCCCHHHHHHHhCCCHHHHHHHhCCC
Confidence            45779999999999999999999988654

>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation

Probab=99.05  E-value=4.6e-10  Score=71.28  Aligned_cols=45  Identities=38%  Similarity=0.590  Sum_probs=41.1

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeC
Q 024853            1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP   46 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP   46 (261)
                      .|+|++|||+|+||++|+++..+|.++|+ +.+...+.+|+.|.||
T Consensus         2 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~-~~~~~~~~~g~~l~ip   46 (46)
T cd00118           2 TYTVKKGDTLSSIAQRYGISVEELLKLNG-LSDPDNLQVGQKLKIP   46 (46)
T ss_pred             EEEECCCCCHHHHHHHHCcCHHHHHHHcC-CCCccccCCCCEEecC
Confidence            48999999999999999999999999995 5456889999999997

This domain may have a general peptidoglycan binding function.

>PRK14125 cell division suppressor protein YneA; Provisional

Probab=99.04  E-value=4e-10  Score=90.73  Aligned_cols=48  Identities=25%  Similarity=0.332  Sum_probs=41.0

Q ss_pred             eeecCCCCHHHHHHHhCCC--------HHHHHHhcCCCCCCCCcCCCCEEEeCCCcch
Q 024853            2 TFGGRGETLTSISKQYGVS--------VYSIAAVNKNIVDVDLVFEGQRLNIPSSVRE   51 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVS--------v~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~   51 (261)
                      |+|++|||||+||++|+.+        ++.|.+.| ++. ++.|+|||+|.||.....
T Consensus        39 ~tV~~GDTLW~IA~~y~~~~~l~~~~~v~~I~~~N-~l~-~~~I~~Gq~L~IP~~~~~   94 (103)
T PRK14125         39 ITVQEGDTLWALADQYAGKHHMAKNEFIEWVEDVN-NLP-SGHIKAGDKLVIPVLKSK   94 (103)
T ss_pred             EEECCCCCHHHHHHHhCCCcCCCHHHHHHHHHHhc-CCC-CCcCCCCCEEEEecCCCC
Confidence            8999999999999999865        56788889 885 568999999999976543

>PRK10871 nlpD lipoprotein NlpD; Provisional

Probab=98.91  E-value=1.4e-09  Score=102.86  Aligned_cols=46  Identities=26%  Similarity=0.202  Sum_probs=44.1

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCC
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS   48 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~   48 (261)
                      |+||+|||||.||++||+++.+|+++| +|.+++.|++||+|.||..
T Consensus        63 y~Vk~GDTL~~IA~~~g~~~~~La~~N-~l~~p~~I~~GQ~L~i~~~  108 (319)
T PRK10871         63 YTVKKGDTLFYIAWITGNDFRDLAQRN-NIQAPYSLNVGQTLQVGNA  108 (319)
T ss_pred             eEECCCCHHHHHHHHHCcCHHHHHHhc-CCCCCccccCCCEEEeCCC
Confidence            899999999999999999999999999 8999999999999999854

>smart00257 LysM Lysin motif

Probab=98.75  E-value=2.3e-08  Score=62.61  Aligned_cols=44  Identities=39%  Similarity=0.611  Sum_probs=39.2

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEe
Q 024853            1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNI   45 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~I   45 (261)
                      .|+|++|||+|+||++|+++..+|.++|| ..+...+.+|+.|.|
T Consensus         1 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~-~~~~~~~~~g~~l~i   44 (44)
T smart00257        1 TYTVKKGDTLSSIARRYGISVSDLLELNN-ILDPDNLQVGQKLKI   44 (44)
T ss_pred             CeEeCCCCCHHHHHHHhCCCHHHHHHHcC-CCCccccCCCCEEeC
Confidence            48999999999999999999999999996 335678999999875

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=98.61  E-value=4.5e-08  Score=96.93  Aligned_cols=45  Identities=29%  Similarity=0.443  Sum_probs=42.0

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCC
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS   48 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~   48 (261)
                      |+|++|||||.||++||+++++|+++| +|. ++.|++||.|.||..
T Consensus        30 ytVq~GDTLw~IA~~ygvtv~~I~~~N-~l~-~~~I~~Gq~L~Ip~~   74 (481)
T PRK13914         30 VVVEAGDTLWGIAQSKGTTVDAIKKAN-NLT-TDKIVPGQKLQVNEV   74 (481)
T ss_pred             EEECCCCCHHHHHHHHCCCHHHHHHHh-CCC-cccccCCCEEEeCCC
Confidence            899999999999999999999999999 784 688999999999953

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=98.48  E-value=1.7e-07  Score=92.96  Aligned_cols=45  Identities=33%  Similarity=0.502  Sum_probs=42.0

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCC
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS   48 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~   48 (261)
                      |+|++|||||.||++||+++++|+++| ++. .+.|++||+|.||..
T Consensus       202 ytVq~GDTL~sIAkrYgVtv~eI~~~N-~l~-s~~L~pGQ~L~Ip~s  246 (481)
T PRK13914        202 HAVKSGDTIWALSVKYGVSVQDIMSWN-NLS-SSSIYVGQKLAIKQT  246 (481)
T ss_pred             EEECCCCCHHHHHHHHCCCHHHHHHhc-CCC-ccccCCCCEEEecCC
Confidence            899999999999999999999999999 785 468999999999975

>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]

Probab=98.48  E-value=1.9e-07  Score=74.95  Aligned_cols=45  Identities=36%  Similarity=0.626  Sum_probs=41.4

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCC
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS   48 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~   48 (261)
                      |+|++||||+.||++|++++.+|+++| ++.+ +.+++||.|.+|..
T Consensus        69 ~~V~~gdtL~~Ia~~~~~tv~~l~~~n-~l~~-~~i~~gq~l~~~~~  113 (124)
T COG1388          69 YTVKKGDTLSKIARKYGVTVAELKQLN-NLSS-DKIKVGQKLKLPVS  113 (124)
T ss_pred             EEEecCCCHHHHHHHhCCCHHHHHHHh-ccCC-CceecCcEEEEecc
Confidence            899999999999999999999999999 6754 59999999999863

>TIGR03505 FimV_core FimV N-terminal domain

Probab=97.76  E-value=2.8e-05  Score=59.50  Aligned_cols=41  Identities=32%  Similarity=0.475  Sum_probs=34.4

Q ss_pred             CCHHHHHHHh---C-CCHH----HHHHhcCCC---CCCCCcCCCCEEEeCCC
Q 024853            8 ETLTSISKQY---G-VSVY----SIAAVNKNI---VDVDLVFEGQRLNIPSS   48 (261)
Q Consensus         8 DTL~sIAkrY---g-VSv~----~I~~~NP~I---~~~d~L~pGQ~L~IP~~   48 (261)
                      ||||+||++|   + +++.    .|.++||+.   .+.+.|++|++|.||..
T Consensus         1 DTLw~IA~~~~~~~~~s~~q~m~ai~~aNp~AF~~~nin~L~~G~~L~iP~~   52 (74)
T TIGR03505         1 DTLWGIAQRVRPDNSVSLYQMMLALYRANPDAFIGGNINRLKVGQILRIPSE   52 (74)
T ss_pred             CcHHHHHHHHccCCCCCHHHHHHHHHHHCHHhHhcCChhhcCCCCEEeCCCH
Confidence            8999999999   4 7877    688899854   24589999999999974

This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.

>COG3858 Predicted glycosyl hydrolase [General function prediction only]

Probab=97.59  E-value=4.5e-05  Score=74.74  Aligned_cols=135  Identities=12%  Similarity=0.026  Sum_probs=90.5

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCCcchhhhhhhhhccccchhhHHhhhhhhhHHhhh
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRL   81 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~~~q~t~~~~~s~y~i~~~~~~s~~tly~~~   81 (261)
                      |.|++||++..|+++|+.+..+|...| .+.+ +.|.+||.+.||....-   ..+..-.+.+++.....++.+.+..++
T Consensus         4 ~~~~pg~~~~~i~~~~~~~~~~i~~~~-~~~~-d~~~~~q~~~v~~~~~~---y~~~~~d~~~Sia~~~~vt~~~~~~m~   78 (423)
T COG3858           4 HLVGPGDSRLIIAVYFPYTNNRIVNGN-DYTN-DDLVDGQTFVVPPSGHF---YDVGPGDTLTSIARTVGVTQDSAAIMN   78 (423)
T ss_pred             EEccCCceeeeehhhcccccccccccc-cccc-ccccCceeEEECCcceE---EEecCCcchhhhhhhhcCCHHHHHhhc
Confidence            789999999999999999999999999 7877 99999999999974210   000011122333332233232222222


Q ss_pred             --hhcccchhh--hccCCccccC--CCCCcccccch-hhhhccccCccC-CccceeeeecCCCCccccc
Q 024853           82 --DKRHISMQI--THRLPHIWRN--RLPSFDLKETL-QHSLNIFYGPLD-KKYFVMEITHGLPQAKTTG  142 (261)
Q Consensus        82 --~k~gism~~--l~~lp~i~~~--~~~~fd~~~~~-~~~~~il~g~l~-~~~~~~~~~~~l~~~~~~~  142 (261)
                        ...+. ++.  ...+|..++.  +...|++++.+ .+...+++.+.| .++.-.|.+|.-|.+..++
T Consensus        79 ~~~~~~~-l~~~~~l~~P~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~p~~t~~~~F~~~~~~~g~l~~  146 (423)
T COG3858          79 FVICPGY-LQYGLNLYIPSARKTDGETTAYYAPRPPTETGELVRRHAGPYLTYVDLFSYHAQENGNLTE  146 (423)
T ss_pred             ccccccc-eeeeeEEeccCCCCCcceeEEEecCCCchhhhhhhhccCCcceeeeccchhcccccccccc
Confidence              11111 111  3457777776  88899999887 788888888888 7788889999977765544

>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]

Probab=97.51  E-value=4.2e-05  Score=61.36  Aligned_cols=86  Identities=20%  Similarity=0.304  Sum_probs=60.0

Q ss_pred             HHHHhCCCHHHHHHhcCCCCC-CCCcCCCCEEEeCCCcchhhhh--hhhhccccc----------hhhHHhhhhhhhHHh
Q 024853           13 ISKQYGVSVYSIAAVNKNIVD-VDLVFEGQRLNIPSSVREELQA--TVKNVISSF----------DLKEIHRRSLNVFYG   79 (261)
Q Consensus        13 IAkrYgVSv~~I~~~NP~I~~-~d~L~pGQ~L~IP~~~~~~~q~--t~~~~~s~y----------~i~~~~~~s~~tly~   79 (261)
                      ||.+|++++.+|..+| .+.. .+.+.+||+|.+|.........  +.......+          ....+....+++|+.
T Consensus         1 ia~~~~~~v~~l~~~n-~~~~~s~~i~~gq~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~gdtL~~   79 (124)
T COG1388           1 IASKYGVSVKALKKAN-ALTGKSDAIKPGQVLKIPGDISSTVNAGQTLSSLSNKVSDSSSASKAPPVVTYTVKKGDTLSK   79 (124)
T ss_pred             CcccccccHHHHHHHh-cccCCCCccccCceEEccCCcccccccccccccccceeeccccccccCCCceEEEecCCCHHH
Confidence            6889999999999999 6643 7899999999999742111110  000000000          012344577999999


Q ss_pred             hhhhcccchhhhccCCcccc
Q 024853           80 RLDKRHISMQITHRLPHIWR   99 (261)
Q Consensus        80 ~~~k~gism~~l~~lp~i~~   99 (261)
                      +++++++++..+..++++..
T Consensus        80 Ia~~~~~tv~~l~~~n~l~~   99 (124)
T COG1388          80 IARKYGVTVAELKQLNNLSS   99 (124)
T ss_pred             HHHHhCCCHHHHHHHhccCC
Confidence            99999999999999876653

>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein

Probab=97.50  E-value=8.6e-05  Score=57.81  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=27.5

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHH---HHHhcCCCCCCCCcCCCCEEEeCC
Q 024853            1 MTFGGRGETLTSISKQYGVSVYS---IAAVNKNIVDVDLVFEGQRLNIPS   47 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~---I~~~NP~I~~~d~L~pGQ~L~IP~   47 (261)
                      .|+|++||||..|-+++|++..+   |+++++.-..-..|+|||.|.+-.
T Consensus         4 ~~~V~~GDtLs~iF~~~gls~~dl~~v~~~~~~~k~L~~L~pGq~l~f~~   53 (85)
T PF04225_consen    4 EYTVKSGDTLSTIFRRAGLSASDLYAVLEADGEAKPLTRLKPGQTLEFQL   53 (85)
T ss_dssp             EEE--TT--HHHHHHHTT--HHHHHHHHHHGGGT--GGG--TT-EEEEEE
T ss_pred             EEEECCCCcHHHHHHHcCCCHHHHHHHHhccCccchHhhCCCCCEEEEEE
Confidence            48999999999999999999876   455552222347899999998853

This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional

Probab=97.49  E-value=0.00017  Score=71.29  Aligned_cols=94  Identities=13%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             ecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcC-CC-CEEEeCCCcchhhhhhh------hhcccc------chhhHH
Q 024853            4 GGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVF-EG-QRLNIPSSVREELQATV------KNVISS------FDLKEI   69 (261)
Q Consensus         4 Vq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~-pG-Q~L~IP~~~~~~~q~t~------~~~~s~------y~i~~~   69 (261)
                      |..+.+|..||+++|+++++|.++||++.. +.+. .| +.|.||......-....      ......      -....+
T Consensus       268 v~~~i~L~~iA~~~gvs~~eL~~LNP~~kr-~~t~p~g~~~llvP~~~~~~f~~~l~~~~~~~~~p~~~~~~~~~~~~~y  346 (456)
T PRK10783        268 LGQQIELAQAAEMAGMSLTKLKTFNAGYKR-STTAPSGPHYIMVPKKHADQLRESLASGEIAAVQSTLVADNTPLNSRSY  346 (456)
T ss_pred             cCCCcCHHHHHHHcCCCHHHHHHhCccccC-CCcCCCCCeEEEecCchhhHHHHhhhhhhhhhcccccccccCcCCceEE
Confidence            445568999999999999999999998854 3333 34 78889975332110000      000000      001123


Q ss_pred             hhhhhhhHHhhhhhcccchhhhccCCccc
Q 024853           70 HRRSLNVFYGRLDKRHISMQITHRLPHIW   98 (261)
Q Consensus        70 ~~~s~~tly~~~~k~gism~~l~~lp~i~   98 (261)
                      ...+++|++++++++|+++..+.+++.+.
T Consensus       347 ~Vk~GDTL~sIA~r~gvs~~~L~~~N~l~  375 (456)
T PRK10783        347 KVRSGDTLSGIASRLNVSTKDLQQWNNLR  375 (456)
T ss_pred             EECCCCcHHHHHHHHCcCHHHHHHHcCCC
Confidence            44779999999999999999998887654

>PRK10190 L,D-transpeptidase; Provisional

Probab=97.32  E-value=0.00041  Score=65.92  Aligned_cols=46  Identities=26%  Similarity=0.348  Sum_probs=41.2

Q ss_pred             eeecCCC--CHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCC
Q 024853            2 TFGGRGE--TLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS   48 (261)
Q Consensus         2 YtVq~GD--TL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~   48 (261)
                      |+|+++|  +|-.||++|++....|.++||++ ++...++|++|.||..
T Consensus        40 ~~v~~~~~~~le~iA~~f~~g~~~l~~aNPgv-d~~~p~~G~~i~iP~~   87 (310)
T PRK10190         40 VTVPDHNTQPLETFAAQYGQGLSNMLEANPGA-DVFLPKSGSQLTIPQQ   87 (310)
T ss_pred             EEecCCCCccHHHHHHHhCCCHHHHHHhCCCC-CCCCCCCCCEEEecCc
Confidence            7899966  59999999999999999999988 5667789999999974

>PRK10260 L,D-transpeptidase; Provisional

Probab=97.29  E-value=0.00046  Score=65.45  Aligned_cols=46  Identities=26%  Similarity=0.348  Sum_probs=41.1

Q ss_pred             eeecCCCC--HHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCC
Q 024853            2 TFGGRGET--LTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS   48 (261)
Q Consensus         2 YtVq~GDT--L~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~   48 (261)
                      |+|++|||  |..||++|++....|+++||++ ++....+|++|.||..
T Consensus        43 ~~v~~~~~~~le~iA~~f~~g~~~l~~aNPgv-dp~lp~~G~~i~iP~~   90 (306)
T PRK10260         43 ITIPEGNTQPLEYFAAEYQMGLSNMMEANPGV-DTFLPKGGTVLNIPQQ   90 (306)
T ss_pred             EEeCCCCCchHHHHHHHhCCCHHHHHHhCcCC-CCCcCCCCCEEEeCCc
Confidence            78999665  9999999999999999999988 5667789999999974

>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX

Probab=96.80  E-value=0.0022  Score=47.17  Aligned_cols=45  Identities=24%  Similarity=0.423  Sum_probs=37.8

Q ss_pred             cCCCCHHHHHHH-hCCC---HHHHHHhcCCCCCC-CCcCCCCEEEeCCCc
Q 024853            5 GRGETLTSISKQ-YGVS---VYSIAAVNKNIVDV-DLVFEGQRLNIPSSV   49 (261)
Q Consensus         5 q~GDTL~sIAkr-YgVS---v~~I~~~NP~I~~~-d~L~pGQ~L~IP~~~   49 (261)
                      +.||||-.||.| ||-.   ++.++++||++.+. ..+..|..|.||.-.
T Consensus         6 ~~GDtlD~I~~r~yG~~~~~~e~ll~aNp~La~~~~~lpaG~~I~lP~i~   55 (60)
T PF05489_consen    6 TQGDTLDLIAYRHYGREDGAVEALLEANPGLADTGPVLPAGTVIILPDIP   55 (60)
T ss_pred             eCcCcHHHHHHHHhCcHHHHHHHHHHHChhhhhcCCcCCCCCEEECCCCC
Confidence            489999999998 5654   46899999999776 788999999999643

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in a family of phage tail proteins. Sequence analysis suggests that they are related to IPR002482 from INTERPRO which suggests a general peptidoglycan binding function.

>COG3858 Predicted glycosyl hydrolase [General function prediction only]

Probab=95.60  E-value=0.011  Score=58.33  Aligned_cols=47  Identities=36%  Similarity=0.385  Sum_probs=42.3

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCCc
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSV   49 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~~   49 (261)
                      |.|++||||++||.+++|+.+++..+|. +..+..+.+|=.|.||...
T Consensus        52 y~~~~~d~~~Sia~~~~vt~~~~~~m~~-~~~~~~l~~~~~l~~P~~~   98 (423)
T COG3858          52 YDVGPGDTLTSIARTVGVTQDSAAIMNF-VICPGYLQYGLNLYIPSAR   98 (423)
T ss_pred             EEecCCcchhhhhhhhcCCHHHHHhhcc-cccccceeeeeEEeccCCC
Confidence            8999999999999999999999999995 4457889999999999653

>PRK11649 putative peptidase; Provisional

Probab=95.43  E-value=0.016  Score=57.26  Aligned_cols=46  Identities=26%  Similarity=0.352  Sum_probs=37.3

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeC
Q 024853            1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP   46 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP   46 (261)
                      .|+|++||||.+|-+++|++..++.+.-....+...|+|||.+.+-
T Consensus        97 ~~~Vk~GDTl~~iL~r~Gi~~~di~~l~~~~~~L~~Lr~Gq~l~~~  142 (439)
T PRK11649         97 EYVVSTGDTLSSILNQYGIDMSDISQLAAQDKELRNLKIGQQLSWT  142 (439)
T ss_pred             EEEeCCCCCHHHHHHHcCCCHHHHHHHHHcChHhhcCCCCCEEEEE
Confidence            4899999999999999999998877662222334689999999885

>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.88  E-value=0.023  Score=59.40  Aligned_cols=48  Identities=25%  Similarity=0.341  Sum_probs=38.3

Q ss_pred             CeeecCCCCHHHHHHHh----CCCHH----HHHHhcCCCC---CCCCcCCCCEEEeCCC
Q 024853            1 MTFGGRGETLTSISKQY----GVSVY----SIAAVNKNIV---DVDLVFEGQRLNIPSS   48 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrY----gVSv~----~I~~~NP~I~---~~d~L~pGQ~L~IP~~   48 (261)
                      .|+|++|||||+||.+-    +++++    .|.+.||+--   +.+.|++|++|.||..
T Consensus       190 tyt~~~~Dtl~dIAs~~rp~~~vt~~Q~~lAly~lNP~af~~gni~RLr~GSvLriP~~  248 (755)
T COG3170         190 TYTVRSGDTLWDIASRLRPQDHVTVEQMLLALYQLNPQAFVNGNINRLRAGSVLRIPSA  248 (755)
T ss_pred             ccccCCcchHHHHHHhhcCcccccHHHHHHHHHhhChhhhcccchhhccccceeeccch
Confidence            38999999999999985    45665    4788999542   2368999999999963

>PRK11198 LysM domain/BON superfamily protein; Provisional

Probab=94.43  E-value=0.037  Score=46.80  Aligned_cols=20  Identities=25%  Similarity=0.228  Sum_probs=17.5

Q ss_pred             CeeecCCCCHHHHHHHhCCC
Q 024853            1 MTFGGRGETLTSISKQYGVS   20 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVS   20 (261)
                      .|+|++|||||+||++|..+
T Consensus        97 ~y~Vk~GDTL~~IA~~~~g~  116 (147)
T PRK11198         97 FYTVKSGDTLSAIAKKVYGN  116 (147)
T ss_pred             EEEECCCCCHHHHHHHHcCC
Confidence            38999999999999998543

>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]

Probab=87.59  E-value=0.75  Score=40.63  Aligned_cols=47  Identities=30%  Similarity=0.528  Sum_probs=41.2

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCC
Q 024853            1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS   48 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~   48 (261)
                      +|.++.|++|..|+.+++++...+...| ++.....+.+|+.+.+|..
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   49 (277)
T COG0739           3 LYVVKKGDTLSAIAARLGISAKDLARLN-NLLKKRLLRIGQLLRVPRA   49 (277)
T ss_pred             eEEecCCCHHHHHHHHcCCCHHHHHHHH-hhccccccCccceeeeccc
Confidence            4789999999999999999999999999 5544448899999999976

>COG5004 P2-like prophage tail protein X [General function prediction only]

Probab=83.02  E-value=2.5  Score=32.36  Aligned_cols=48  Identities=17%  Similarity=0.356  Sum_probs=36.7

Q ss_pred             eeecCCCCHHHHHHH-hCCC---HHHHHHhcCCCCCC-CCcCCCCEEEeCCCc
Q 024853            2 TFGGRGETLTSISKQ-YGVS---VYSIAAVNKNIVDV-DLVFEGQRLNIPSSV   49 (261)
Q Consensus         2 YtVq~GDTL~sIAkr-YgVS---v~~I~~~NP~I~~~-d~L~pGQ~L~IP~~~   49 (261)
                      |....|||+-.|+.+ ||-+   .+.++++||++.+- -.+..|-.|.+|...
T Consensus         5 ~Rt~~gDtvDalc~~~Ygrt~~v~eavl~ANpGlAd~gp~lp~gl~i~lPD~~   57 (70)
T COG5004           5 VRTRQGDTVDALCWRVYGRTTGVTEAVLEANPGLADWGPVLPHGLAITLPDIA   57 (70)
T ss_pred             EEeccCchHHHHHHHHHhhHHHHHHHHHhcCCChhhcCCCCccceeEecCCCC
Confidence            455689999999998 5544   45788899999766 456678888888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
2djp_A	77	Hypothetical protein SB145; LYSM, structural genom	7e-09
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	3e-06
1e0g_A	48	Membrane-bound lytic murein transglycosylase D; ce	4e-05

>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77

 Score = 50.6 bits (121), Expect = 7e-09
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 6  RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS 48
           G+TL  ++ +YGV++  I   N  +   D +F  + L IP  
Sbjct: 22 PGDTLAGLALKYGVTMEQIKRAN-RLYTNDSIFLKKTLYIPIL 63

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Length = 167

 Score = 52.7 bits (126), Expect = 7e-09
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 6   RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS 48
           +G+TL  I +++    + IA  N NI + DL++ GQ L +P+ 
Sbjct: 69  QGDTLRDIGRRFDCDFHEIARRN-NIQNEDLIYPGQVLQVPTK 110

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 6e-08
 Identities = 39/286 (13%), Positives = 73/286 (25%), Gaps = 62/286 (21%)

Query: 8   ETLTSISKQYGVSVYSIAAVNKNIV--------DVDLVFEGQ-------RLNIPSSVREE 52
           + L  +     V +  +    K  V         V    + +         N P +V E 
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 53  LQAT----VKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHR----LPHIWRNR-LP 103
           LQ        N  S  D     +  ++     L +R +  +        L ++   +   
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 104 SFDLK-ETL-----QHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAFCIR- 156
           +F+L  + L     +   +           +   +  L   +     L  +      +  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 157 --CMIGAFHTRIAGGSGHRVANGSKGRHPGSKSVRWK----SALRDIIEEDLDSGSRPRT 210
                      I   S                   WK      L  IIE  L+       
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWD---------NWKHVNCDKLTTIIESSLNV------ 365

Query: 211 NDPVEEQDQAQPLISFEESSHAYRKL---------EDDYEKFLSEC 247
            +P E +     L  F  S+H    L         + D    +++ 
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 5e-06
 Identities = 37/227 (16%), Positives = 63/227 (27%), Gaps = 60/227 (26%)

Query: 35  DL-VFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHR 93
            L VF     +IP+ +   +   V        + ++H+ SL      ++K+    + T  
Sbjct: 377 RLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL------VEKQ--PKESTIS 427

Query: 94  LPHIWRNRLPSFDLKETLQHSLNIFYGPLDKKYFVMEITHGLPQAKTTGYFLVVVPLIAF 153
           +P I+       + +  L  S+   Y    K +     +  L       YF         
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIP-KTFD----SDDLIPPYLDQYFY-------- 474

Query: 154 CIRCMIGAFHTRIAGGSGHRVAN-----------GSKGRHPGSKSVRWKSALRDIIEEDL 202
                IG  H +       R+               K RH  +      S L  +    L
Sbjct: 475 ---SHIG-HHLKNI-EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ--QL 527

Query: 203 DS-GSRPRTNDPVEEQDQAQPLISFEESSHAYRKLEDDYEKFLSECG 248
                    NDP                   Y +L +    FL +  
Sbjct: 528 KFYKPYICDNDP------------------KYERLVNAILDFLPKIE 556

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Length = 212

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 6  RGETLTSISKQYGVSVYS--------IAAVNKNIVDVDLVFEGQRLNIPSS 48
           G TL+ I++    S+          I   N NI D D +  G R+ +P  
Sbjct: 16 NGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFP 66

>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1 Length = 48

 Score = 39.1 bits (92), Expect = 4e-05
 Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 6  RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
          +G++L+SI+K++GV++  +   N +      +  G +L + 
Sbjct: 9  KGDSLSSIAKRHGVNIKDVMRWNSD---TANLQPGDKLTLF 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	99.44
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	99.4
1e0g_A	48	Membrane-bound lytic murein transglycosylase D; ce	99.33
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	99.32
2djp_A	77	Hypothetical protein SB145; LYSM, structural genom	99.3
2gu1_A	361	Zinc peptidase; alpha/beta, beta barrel, structura	98.78
4a1k_A	165	Putative L, D-transpeptidase YKUD; transferase, pe	98.53
2gu1_A	361	Zinc peptidase; alpha/beta, beta barrel, structura	97.42
3slu_A	371	M23 peptidase domain protein; outer membrane, hydr	96.48
2djp_A	77	Hypothetical protein SB145; LYSM, structural genom	87.58

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}

Probab=99.44  E-value=1.4e-14  Score=123.23  Aligned_cols=89  Identities=20%  Similarity=0.210  Sum_probs=67.8

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCCcchhhh-hhhhhccccchhhH-HhhhhhhhHHh
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQ-ATVKNVISSFDLKE-IHRRSLNVFYG   79 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~~~q-~t~~~~~s~y~i~~-~~~~s~~tly~   79 (261)
                      |+||+|||||.||++||+++.+|+++| +|.+++.|+|||+|.||........ ..+..     +-.. +....+++|++
T Consensus        65 y~V~~GDTL~~IA~~~~~~~~~l~~~N-~~~~~~~i~~Gq~L~ip~~~~~~~~~~~~~~-----~~~~~~~v~~GdtL~a  138 (167)
T 2l9y_A           65 VTVQQGDTLRDIGRRFDCDFHEIARRN-NIQNEDLIYPGQVLQVPTKGGSGGGAGNFWD-----SARDVRLVDGGKVLEA  138 (167)
T ss_dssp             EEECTTCCHHHHHHHTTCCHHHHHHHH-TCCGGGCCCTTEEEEESCCCCCSSSSCCGGG-----GEEEEEEETTTTEEEE
T ss_pred             EEECCCCcHHHHHHHcCCCHHHHHHHc-CCCCcccccCCCEEEEcCCCCcccccccccc-----ccceEEEeCCcCChHH
Confidence            999999999999999999999999999 8999999999999999975432110 00000     0011 12367999999


Q ss_pred             hhhhcccchhhhccCCc
Q 024853           80 RLDKRHISMQITHRLPH   96 (261)
Q Consensus        80 ~~~k~gism~~l~~lp~   96 (261)
                      +++++|..+.....|.+
T Consensus       139 IA~r~G~~v~s~i~Ln~  155 (167)
T 2l9y_A          139 ELRYSGGWNRSRIYLDE  155 (167)
T ss_dssp             EEEETTEEEEEEECGGG
T ss_pred             HHHHcCCceEEEEEccc
Confidence            99889988777666654

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*

Probab=99.40  E-value=8.7e-14  Score=122.27  Aligned_cols=90  Identities=18%  Similarity=0.160  Sum_probs=70.9

Q ss_pred             eeecCCCCHHHHHHHhCCCH--------HHHHHhcCCCCCCCCcCCCCEEEeCCCcchhhhhhhhhccccchhhHHhhhh
Q 024853            2 TFGGRGETLTSISKQYGVSV--------YSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDLKEIHRRS   73 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv--------~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~~~q~t~~~~~s~y~i~~~~~~s   73 (261)
                      |+|++|||||.||++||+++        ++|+++||+|.+++.|++||.|.||......... ...     ....+....
T Consensus        12 Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~-~~~-----~~~~Y~V~~   85 (212)
T 4eby_A           12 YYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGD-FLG-----HNFSYSVRQ   85 (212)
T ss_dssp             EECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTT-EEE-----EEEEEECCT
T ss_pred             EEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCc-ccc-----CceEEEecC
Confidence            99999999999999999999        9999999999878999999999999653211100 000     011234567


Q ss_pred             hhhHHhhh-hhcc--cchhhhccCCcc
Q 024853           74 LNVFYGRL-DKRH--ISMQITHRLPHI   97 (261)
Q Consensus        74 ~~tly~~~-~k~g--ism~~l~~lp~i   97 (261)
                      ++|||.++ ++++  ++++.+.+++.+
T Consensus        86 GDTL~~IA~~~y~~lvt~~~L~~~N~~  112 (212)
T 4eby_A           86 EDTYERVAISNYANLTTMESLQARNPF  112 (212)
T ss_dssp             TCCHHHHHHTTTTTSSCHHHHHHHCCS
T ss_pred             CCcHHHHHHHhcCCCCCHHHHHHhcCC
Confidence            99999999 8999  999999888753

>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1

Probab=99.33  E-value=1.1e-12  Score=87.81  Aligned_cols=44  Identities=25%  Similarity=0.358  Sum_probs=41.1

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCC
Q 024853            1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS   47 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~   47 (261)
                      .|+|++|||||+||++||+++++|+++|+   +++.|++||+|.||.
T Consensus         4 ~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~---~~~~l~~G~~l~ip~   47 (48)
T 1e0g_A            4 TYRVRKGDSLSSIAKRHGVNIKDVMRWNS---DTANLQPGDKLTLFV   47 (48)
T ss_dssp             EEEECTTCCHHHHHHHHTCCHHHHHHHCS---CGGGCCTTEEEECCC
T ss_pred             EEEEcCCCcHHHHHHHHCcCHHHHHHhCC---CCCcCCcCCEEEEec
Confidence            38999999999999999999999999995   578999999999995

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*

Probab=99.32  E-value=3.5e-13  Score=118.45  Aligned_cols=91  Identities=15%  Similarity=0.106  Sum_probs=69.5

Q ss_pred             CeeecCCCCHHHHH-HHhC--CCHHHHHHhcCCCCCCCCcCCCCEEEeCCCcchhhhhhhhhccccchh-hHHhhhhhhh
Q 024853            1 MTFGGRGETLTSIS-KQYG--VSVYSIAAVNKNIVDVDLVFEGQRLNIPSSVREELQATVKNVISSFDL-KEIHRRSLNV   76 (261)
Q Consensus         1 mYtVq~GDTL~sIA-krYg--VSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~~~~~~q~t~~~~~s~y~i-~~~~~~s~~t   76 (261)
                      .|+|++|||||+|| ++|+  +++++|+++|+ + +++.|++||+|.||.........    ....+.. ..+....++|
T Consensus        80 ~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~-~-~~~~l~~Gq~L~IP~~~~~~~~~----~~~~~~~~~~Y~V~~GDT  153 (212)
T 4eby_A           80 SYSVRQEDTYERVAISNYANLTTMESLQARNP-F-PATNIPLSATLNVLVNCSCGDES----VSKDFGLFVTYPLRPEDS  153 (212)
T ss_dssp             EEECCTTCCHHHHHHTTTTTSSCHHHHHHHCC-S-CTTCCCTTCEEEEEEECCCCCTT----TCSSCCCEEEEECCTTCC
T ss_pred             EEEecCCCcHHHHHHHhcCCCCCHHHHHHhcC-C-CcccCCCCCEEEEcCCCcCCCcc----cccCCCCeEEEEECCCCc
Confidence            39999999999999 7999  99999999995 6 57899999999999643211111    0111111 1234577999


Q ss_pred             HHhhhhhcccchhhhccCCcc
Q 024853           77 FYGRLDKRHISMQITHRLPHI   97 (261)
Q Consensus        77 ly~~~~k~gism~~l~~lp~i   97 (261)
                      |+++++++|++++.+.+++.+
T Consensus       154 L~~IA~~fgvsv~~L~~~N~~  174 (212)
T 4eby_A          154 LSSIARSSGVSADILQRYNPG  174 (212)
T ss_dssp             HHHHHHHHTSCHHHHHHHSTT
T ss_pred             HHHHHHHHCcCHHHHHHhcCC
Confidence            999999999999999998754

>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.2e-12  Score=96.71  Aligned_cols=46  Identities=28%  Similarity=0.411  Sum_probs=43.4

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCCC
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPSS   48 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~~   48 (261)
                      |+|++|||||+||++|++++++|+++| ++.+++.|++||+|.||..
T Consensus        18 y~V~~GDTL~~IA~~~~~~~~~l~~~N-~l~~~~~l~~Gq~l~iP~~   63 (77)
T 2djp_A           18 HQLEPGDTLAGLALKYGVTMEQIKRAN-RLYTNDSIFLKKTLYIPIL   63 (77)
T ss_dssp             ECCCTTCCHHHHHHHHTCCHHHHHHHH-TCCCSSCGGGSSCEEEEEE
T ss_pred             EEECCCCcHHHHHHHHCcCHHHHHHHc-CCCCccccCCCCEEEECCC
Confidence            999999999999999999999999999 7877789999999999964

>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}

Probab=98.78  E-value=3.9e-10  Score=105.20  Aligned_cols=97  Identities=14%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCC----CCCcCCCCEEEeCCCcchh-----------hhhhhhhc-cccc
Q 024853            1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVD----VDLVFEGQRLNIPSSVREE-----------LQATVKNV-ISSF   64 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~----~d~L~pGQ~L~IP~~~~~~-----------~q~t~~~~-~s~y   64 (261)
                      .|+|++|||||+||++||+++++|.++| ++..    .+.|++||.|.||......           .+.++... ...|
T Consensus         9 ~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n-~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~f   87 (361)
T 2gu1_A            9 HYMVKVGDTLSGIFAQLGVPYSILQKIL-SVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSF   87 (361)
T ss_dssp             EEECCTTCCHHHHHHHTTCCHHHHHHHH-HHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECTTSCE
T ss_pred             EEEECCCCcHHHHHHHcCCCHHHHHHHH-hhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecCCCcc
Confidence            3899999999999999999999999999 5532    4789999999999542210           00000000 0001


Q ss_pred             h-----------hhHHhhhhhhhHHhhhhhcccchhhhccCCccc
Q 024853           65 D-----------LKEIHRRSLNVFYGRLDKRHISMQITHRLPHIW   98 (261)
Q Consensus        65 ~-----------i~~~~~~s~~tly~~~~k~gism~~l~~lp~i~   98 (261)
                      .           ...+.....++||.+++++|++.+.+.+++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~  132 (361)
T 2gu1_A           88 SYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVM  132 (361)
T ss_dssp             EEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             eeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhh
Confidence            0           011233557899999999999999988876654

>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*

Probab=98.53  E-value=5.7e-08  Score=81.95  Aligned_cols=44  Identities=25%  Similarity=0.390  Sum_probs=40.5

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCC
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS   47 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~   47 (261)
                      |+||+||||..||++|+++..+|+++||++ ++ .|.+|+.|.||.
T Consensus         5 y~V~~GdtL~~IA~~f~~g~~~l~~aNp~v-d~-~l~~g~~i~ip~   48 (165)
T 4a1k_A            5 YQVKQGDTLNSIAADFRISTAALLQANPSL-QA-GLTAGQSIVIPG   48 (165)
T ss_dssp             EECCTTCCHHHHHHHTTCCHHHHHHHCGGG-GG-CCCTTCEEEETT
T ss_pred             EEECCCCCHHHHHHHhCCCHHHHHHhCccC-CC-ccCCCccccCcc
Confidence            999999999999999999999999999977 33 579999999985

>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}

Probab=97.42  E-value=5.9e-05  Score=70.22  Aligned_cols=46  Identities=13%  Similarity=0.268  Sum_probs=38.8

Q ss_pred             eeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCC-----CCcCCCCEEEeCCC
Q 024853            2 TFGGRGETLTSISKQYGVSVYSIAAVNKNIVDV-----DLVFEGQRLNIPSS   48 (261)
Q Consensus         2 YtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~-----d~L~pGQ~L~IP~~   48 (261)
                      |+|+.|||||.||++||+++++|+++| ++...     ..|++||+|.|+..
T Consensus       103 ~~v~igdSL~~iA~~~Gvs~~~i~~ln-~i~~~~idf~~~Lr~GD~l~V~~~  153 (361)
T 2gu1_A          103 FSGEINGSFSVSARRVGLTSSQVANIT-QVMKDKIDFSRSLRAGDRFDILVK  153 (361)
T ss_dssp             EEEESSSCHHHHHHHTTCCHHHHHHHH-HHHTTTCCTTTCCCC-CEEEEEEE
T ss_pred             EEEEECCcHHHHHHHcCCCHHHHHHHH-HhhcccccccccCCCCCEEEEEEE
Confidence            678899999999999999999999999 56432     45999999999853

>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}

Probab=96.48  E-value=0.0028  Score=59.77  Aligned_cols=47  Identities=15%  Similarity=0.224  Sum_probs=38.0

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHHHHHhcCCC---CCCCCcCCCCEEEeCC
Q 024853            1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNI---VDVDLVFEGQRLNIPS   47 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I---~~~d~L~pGQ~L~IP~   47 (261)
                      .|+|++||||.+|-+++|++..++.+.+...   .+...|+|||.|.+..
T Consensus        16 ~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~   65 (371)
T 3slu_A           16 QEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLV   65 (371)
T ss_dssp             EEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEE
T ss_pred             EEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEE
Confidence            3899999999999999999999888876322   2457899999999964

>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.58  E-value=0.059  Score=38.90  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=33.7

Q ss_pred             CCCEEEeCCCcchhhhhhhhhccccchhhHHhhhhhhhHHhhhhhcccchhhhccCCccc
Q 024853           39 EGQRLNIPSSVREELQATVKNVISSFDLKEIHRRSLNVFYGRLDKRHISMQITHRLPHIW   98 (261)
Q Consensus        39 pGQ~L~IP~~~~~~~q~t~~~~~s~y~i~~~~~~s~~tly~~~~k~gism~~l~~lp~i~   98 (261)
                      .||.|.||....             +  ..+....++||++++++++++++.+.+++.+.
T Consensus         3 ~Gq~l~ip~~~~-------------~--~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~   47 (77)
T 2djp_A            3 SGSSGCSPVRER-------------R--LEHQLEPGDTLAGLALKYGVTMEQIKRANRLY   47 (77)
T ss_dssp             CCCCCCCCCCEE-------------E--EEECCCTTCCHHHHHHHHTCCHHHHHHHHTCC
T ss_pred             CCcEeeccCCCC-------------c--EEEEECCCCcHHHHHHHHCcCHHHHHHHcCCC
Confidence            689999985421             1  11234679999999999999999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1e0ga_	48	d.7.1.1 (A:) Membrane-bound lytic murein transclyc	5e-07
d1y7ma2	48	d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-term	1e-04

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Length = 48

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

 Score = 43.5 bits (103), Expect = 5e-07
 Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 6  RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
          +G++L+SI+K++GV++  +   N +      +  G +L + 
Sbjct: 9  KGDSLSSIAKRHGVNIKDVMRWNSDT---ANLQPGDKLTLF 46

>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 48

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 6  RGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIP 46
          +G+TL SI+  + +S  ++   N ++     +  GQ + IP
Sbjct: 8  QGDTLNSIAADFRISTAALLQANPSLQAG--LTAGQSIVIP 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1y7ma2	48	Hypothetical protein YkuD, N-terminal domain {Baci	99.47
d1e0ga_	48	Membrane-bound lytic murein transclycosylase D, Ml	99.47
d1y7ma2	48	Hypothetical protein YkuD, N-terminal domain {Baci	84.52
d1e0ga_	48	Membrane-bound lytic murein transclycosylase D, Ml	83.63

>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.47  E-value=3.4e-15  Score=101.94  Aligned_cols=45  Identities=24%  Similarity=0.347  Sum_probs=41.2

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCC
Q 024853            1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS   47 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~   47 (261)
                      +|+||+|||||+||++||+++++|+++|| +.+ +.|++||+|.||.
T Consensus         3 ~y~V~~GDTL~~IA~~y~v~~~~i~~~N~-~~~-~~l~~Gq~L~IPg   47 (48)
T d1y7ma2           3 TYQVKQGDTLNSIAADFRISTAALLQANP-SLQ-AGLTAGQSIVIPG   47 (48)
T ss_dssp             EEECCTTCCHHHHHHHTTSCCCCCCCTSC-TTC-SSCCTTCEEEETT
T ss_pred             EEEECCCCCHHHHHHHhCCCHHHHHHHcC-CCC-CCCCCCCEEEeCC
Confidence            49999999999999999999999999995 655 4699999999995

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.4e-14  Score=99.30  Aligned_cols=44  Identities=23%  Similarity=0.300  Sum_probs=40.6

Q ss_pred             CeeecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCCCcCCCCEEEeCC
Q 024853            1 MTFGGRGETLTSISKQYGVSVYSIAAVNKNIVDVDLVFEGQRLNIPS   47 (261)
Q Consensus         1 mYtVq~GDTL~sIAkrYgVSv~~I~~~NP~I~~~d~L~pGQ~L~IP~   47 (261)
                      .|+|++|||||+||++||+++++|+++| ++.  +.|+|||+|.||.
T Consensus         4 ~y~V~~GDTl~~IA~~y~vs~~~i~~~N-~l~--~~l~~Gq~L~i~v   47 (48)
T d1e0ga_           4 TYRVRKGDSLSSIAKRHGVNIKDVMRWN-SDT--ANLQPGDKLTLFV   47 (48)
T ss_dssp             EEEECTTCCHHHHHHHHTCCHHHHHHHC-SCG--GGCCTTEEEECCC
T ss_pred             EEEECCCCCHHHHHHHHCCCHHHHHHHc-CCc--ccCcCCCEEEEEe
Confidence            3999999999999999999999999999 774  4699999999985

>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=84.52  E-value=0.11  Score=33.60  Aligned_cols=28  Identities=7%  Similarity=-0.105  Sum_probs=24.5

Q ss_pred             hhhhhhHHhhhhhcccchhhhccCCccc
Q 024853           71 RRSLNVFYGRLDKRHISMQITHRLPHIW   98 (261)
Q Consensus        71 ~~s~~tly~~~~k~gism~~l~~lp~i~   98 (261)
                      ...++||++++++++++++.+.+++.+.
T Consensus         6 V~~GDTL~~IA~~y~v~~~~i~~~N~~~   33 (48)
T d1y7ma2           6 VKQGDTLNSIAADFRISTAALLQANPSL   33 (48)
T ss_dssp             CCTTCCHHHHHHHTTSCCCCCCCTSCTT
T ss_pred             ECCCCCHHHHHHHhCCCHHHHHHHcCCC
Confidence            4679999999999999999999988654

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=83.63  E-value=0.11  Score=33.79  Aligned_cols=28  Identities=7%  Similarity=-0.028  Sum_probs=24.6

Q ss_pred             hhhhhhHHhhhhhcccchhhhccCCccc
Q 024853           71 RRSLNVFYGRLDKRHISMQITHRLPHIW   98 (261)
Q Consensus        71 ~~s~~tly~~~~k~gism~~l~~lp~i~   98 (261)
                      ...++|||++++++|+++..+.+++.++
T Consensus         7 V~~GDTl~~IA~~y~vs~~~i~~~N~l~   34 (48)
T d1e0ga_           7 VRKGDSLSSIAKRHGVNIKDVMRWNSDT   34 (48)
T ss_dssp             ECTTCCHHHHHHHHTCCHHHHHHHCSCG
T ss_pred             ECCCCCHHHHHHHHCCCHHHHHHHcCCc
Confidence            4679999999999999999999998653