Citrus Sinensis ID: 024868

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM
Secondary Structure (PSIPRED)
cccccEEEEEcccccEEEEEcEEccEEEEEEccccEEEEEEEcccEEEEEEcccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEEcccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEccccccccEEEEEEccccccccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEcccccEEEEEEcccccccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEcccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEcccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccccEEEEEEEccccccEEEEEEEEcccccEEEEEEcccccEccccccccccEEEEEEcccccEEEc
Coil and Loop (DISEMBL)
megggtvtcgswikrpenvnLVVLGkssrassspsvleifsfdpkttsvytsplvtyvfdesegdpmtiavnpsgddfvcsttnggcklfevyggatdinllakkmpplqdagpqkclsfsvdgsrfaaggvdghlrimhwpslriildepkahksvldmdfsldSEFLattstdgsariwktEDGVAWTFltrnsdekielcrfskdgtkpflfctvqrgdKALLAVYDISTwnkighkrllrkpasvlsisldgkylam
Flexible Loop (DISEMBL)
megggtvtcgswikrpenVNLVVLGkssrassspsvleifsfdpkttsvytSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAttstdgsariwkteDGVAWTFLTRNSDEKIELCrfskdgtkpflFCTVQRGDKALLAVYDISTwnkighkrllrkpasvlsisldgkylam
Low Complexity Region (SEG)
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM
Disordered region (IsUnstruct)
******VTCGSWIKRPENVNLVVLG**********VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL*******
Disordered Region (DISOPRED)
*EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM
Disordered Region (DISEMBL)
MEGGGTVTCGSWIKRPENVNLVVLGKS********VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM
Disordered Region (DISPRO)
***GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q8GYE0	398	SEC12-like protein 1 OS=A	yes	no	0.984	0.645	0.643	6e-98
Q39221	393	SEC12-like protein 2 OS=A	no	no	0.846	0.562	0.299	5e-19
Q7ZVA0	513	WD40 repeat-containing pr	no	no	0.367	0.187	0.307	2e-06
Q9I9H8	1261	Apoptotic protease-activa	no	no	0.409	0.084	0.311	2e-06
Q5ZME8	513	WD40 repeat-containing pr	yes	no	0.367	0.187	0.298	5e-06
Q6NRT3	513	WD40 repeat-containing pr	N/A	no	0.367	0.187	0.298	5e-06
Q3UKJ7	513	WD40 repeat-containing pr	yes	no	0.367	0.187	0.298	5e-06
Q2TAY7	513	WD40 repeat-containing pr	yes	no	0.367	0.187	0.298	5e-06
Q76B40	513	WD40 repeat-containing pr	no	no	0.367	0.187	0.298	5e-06
Q2TBS9	513	WD40 repeat-containing pr	yes	no	0.367	0.187	0.298	5e-06

>sp|Q8GYE0|PHF1_ARATH SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2

 Score =  357 bits (915), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 168/261 (64%), Positives = 209/261 (80%), Gaps = 4/261 (1%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
           G V CGSWI+RP+ VN V++ K+S+    + SSP++L IFSFDP T S+ +SPL T+   
Sbjct: 11  GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLK 70

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           +S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct: 71  DSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAF 130

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           S DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct: 131 SFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  ++ VYDISTW K+G K
Sbjct: 191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFK 250

Query: 241 RLLRKPASVLSISLDGKYLAM 261
           +L RK AS +++SLDGKY+A+
Sbjct: 251 KLSRKTASTMAVSLDGKYIAL 271

Involved in Pi uptake by facilitating the trafficking of PHT1-1/PHT1;1 from the endoplasmic reticulum to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39221|STLP2_ARATH SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 13/234 (5%)

Query: 35  SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG 94
           +V+ I   D  T S+   PL   V       P  +AV+P     +C+  N  CKLF    
Sbjct: 75  NVILICRVDLNTNSLSEQPLGRLVVGSDL--PYRMAVHPREGGLICALPNS-CKLFHWED 131

Query: 95  GATDINLLAKK----MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150
             +  +  A +    +  L+D G Q  L+F+ +GS  AAG  DG LR+  WPS+  +L+E
Sbjct: 132 IMSREDNQAGESEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNE 191

Query: 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
            +AH SV  + FS   +FL +       R+W      A   L++  DE    CRFS D  
Sbjct: 192 SQAHSSVKCLTFSESGQFLVSLGGP-VCRVWDVNASAAVASLSKEKDEMFASCRFSVDSA 250

Query: 211 KP---FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261
                ++    +RG   +    D   W +   K + +   S  ++S DGK LA+
Sbjct: 251 GNEVLYIAANTERGGSIITC--DTKLWKRKWSKPIKKNSISAFNVSADGKLLAI 302

Required for the formation or budding of transport vesicles from the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7ZVA0|SMU1_DANRE WD40 repeat-containing protein SMU1 OS=Danio rerio GN=smu1 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--------SVLDMDFSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D     +        +VL M FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMSFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
            LAT + DG  ++WK + G       R   + +    FSKD T+
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRYERAHSKGVTCLSFSKDSTQ 321

Danio rerio (taxid: 7955)

>sp|Q9I9H8|APAF_DANRE Apoptotic protease-activating factor 1 OS=Danio rerio GN=apaf1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 106 MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165
           M P Q A    C  FS DGS+ A+ G    LR+    S   +L+     + VL   FS D
Sbjct: 613 MHPHQGAVYYAC--FSKDGSKIASCGASKALRVFKSTSGEKLLELQAHEEDVLCCAFSPD 670

Query: 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214
              +AT ++D   ++W  E GV         +E+I  C+F+  G +  L
Sbjct: 671 DRHIATCASDRKVKLWNVERGVLIREFEVEHEEQINHCQFTNTGRRVLL 719

Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase 9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.

Danio rerio (taxid: 7955)

>sp|Q5ZME8|SMU1_CHICK WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
            LAT + DG  ++WK + G       R   + +    FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321

Gallus gallus (taxid: 9031)

>sp|Q6NRT3|SMU1_XENLA WD40 repeat-containing protein SMU1 OS=Xenopus laevis GN=smu1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
            LAT + DG  ++WK + G       R   + +    FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321

Xenopus laevis (taxid: 8355)

>sp|Q3UKJ7|SMU1_MOUSE WD40 repeat-containing protein SMU1 OS=Mus musculus GN=Smu1 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
            LAT + DG  ++WK + G       R   + +    FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321

Mus musculus (taxid: 10090)

>sp|Q2TAY7|SMU1_HUMAN WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
            LAT + DG  ++WK + G       R   + +    FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321

Homo sapiens (taxid: 9606)

>sp|Q76B40|SMU1_CRIGR WD40 repeat-containing protein SMU1 OS=Cricetulus griseus GN=SMU1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
            LAT + DG  ++WK + G       R   + +    FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321

Cricetulus griseus (taxid: 10029)

>sp|Q2TBS9|SMU1_BOVIN WD40 repeat-containing protein SMU1 OS=Bos taurus GN=SMU1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
            LAT + DG  ++WK + G       R   + +    FSKD ++
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ 321

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
356535527	394	PREDICTED: SEC12-like protein 1-like [Gl	0.984	0.652	0.762	1e-114
224113177	385	predicted protein [Populus trichocarpa]	0.984	0.667	0.760	1e-113
356576347	394	PREDICTED: SEC12-like protein 1-like [Gl	0.984	0.652	0.750	1e-113
388521319	390	unknown [Lotus japonicus]	0.984	0.658	0.739	1e-111
225448865	391	PREDICTED: SEC12-like protein 1-like [Vi	0.984	0.657	0.737	1e-110
255584376	303	nucleotide binding protein, putative [Ri	1.0	0.861	0.731	1e-107
217073440	392	unknown [Medicago truncatula]	0.984	0.655	0.704	1e-104
449441826	393	PREDICTED: SEC12-like protein 1-like [Cu	0.984	0.653	0.688	1e-103
449522724	393	PREDICTED: LOW QUALITY PROTEIN: SEC12-li	0.984	0.653	0.680	1e-101
297819930	397	hypothetical protein ARALYDRAFT_485583 [	0.984	0.647	0.651	2e-97

>gi|356535527|ref|XP_003536296.1| PREDICTED: SEC12-like protein 1-like [Glycine max]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/257 (76%), Positives = 227/257 (88%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R SS PS+LEIFSFDPKTTS+ TSPL TYV +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSRRGSSCPSLLEIFSFDPKTTSLSTSPLTTYVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ I V+PSGDDFVC+ +NG CKLFE+YG  T++ LLAK++ PLQ  GPQKC+SFSVDG
Sbjct: 70  DPVAITVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCISFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG+DGHLRIM WPS+R+ILDEP+AH SV DMDFSLDSEFLA+TSTDGSARIWKTE
Sbjct: 130 SKFAAGGMDGHLRIMEWPSMRVILDEPRAHNSVQDMDFSLDSEFLASTSTDGSARIWKTE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV    L+RNSDEKIELCRFSKDGTKPFLFC+VQ+GD ++ AVYDISTWNKIGHKRL+R
Sbjct: 190 DGVPLNTLSRNSDEKIELCRFSKDGTKPFLFCSVQKGDTSVTAVYDISTWNKIGHKRLIR 249

Query: 245 KPASVLSISLDGKYLAM 261
           K ASV+SIS DGKYL++
Sbjct: 250 KSASVMSISNDGKYLSL 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113177|ref|XP_002316416.1| predicted protein [Populus trichocarpa] gi|222865456|gb|EEF02587.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/259 (76%), Positives = 229/259 (88%), Gaps = 2/259 (0%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSS--RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES 62
           GTVTCGSWI+RPEN+NLVVLGKSS  R S+S SVLEIFSFDP+T S+  SP VTYVF+E+
Sbjct: 3   GTVTCGSWIRRPENLNLVVLGKSSKKRESASRSVLEIFSFDPQTASLSNSPQVTYVFEET 62

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV 122
           EG+P+TIAV+P+GDDFVCST+ GGCKL E+ G  T++ LLAK++PPLQD GPQ C++FSV
Sbjct: 63  EGEPVTIAVHPNGDDFVCSTSKGGCKLLELSGQETNLKLLAKELPPLQDVGPQNCMAFSV 122

Query: 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
           DGS+FA GGV+G +RI+ WPSLRIILDE KAH SV DMDFSLDSEFLA+TSTDGSARIWK
Sbjct: 123 DGSKFATGGVEGRVRILKWPSLRIILDEAKAHNSVRDMDFSLDSEFLASTSTDGSARIWK 182

Query: 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
            EDG A   LTRNSDEKIELCRFSKDGTKPFLFC VQ+GDKA+ +VYDISTW KIG+KRL
Sbjct: 183 AEDGSAVATLTRNSDEKIELCRFSKDGTKPFLFCAVQKGDKAVTSVYDISTWKKIGYKRL 242

Query: 243 LRKPASVLSISLDGKYLAM 261
           LRKPA+++SISLDGKYLA+
Sbjct: 243 LRKPAAIMSISLDGKYLAL 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576347|ref|XP_003556294.1| PREDICTED: SEC12-like protein 1-like [Glycine max]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/257 (75%), Positives = 227/257 (88%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R +S PS+LEIFSFDPKTTS+ T PL TYV +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSRRGNSCPSLLEIFSFDPKTTSLSTCPLTTYVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ IAV+PSGDDFVC+ +NG CKLFE+YG  T++ LLAK++ PLQ  GPQKC++FSVDG
Sbjct: 70  DPVAIAVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCIAFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG+DGHLRIM WPS+R+ILDEP+AHKSV DMDFSLDSEFLA+TSTDGSARIWK E
Sbjct: 130 SKFAAGGLDGHLRIMEWPSMRVILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKIE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFS DGTKPFLFC+VQ+GD ++ AVY+ISTWNKIGHKRL+R
Sbjct: 190 DGVPLTTLSRNSDEKIELCRFSMDGTKPFLFCSVQKGDTSVTAVYEISTWNKIGHKRLIR 249

Query: 245 KPASVLSISLDGKYLAM 261
           K ASV+SIS DGKYL++
Sbjct: 250 KSASVMSISHDGKYLSL 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521319|gb|AFK48721.1| unknown [Lotus japonicus]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/257 (73%), Positives = 223/257 (86%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPENVNL VLG+S R  S PS+L+IFSFDP TTS++TSPL T+V +  EG
Sbjct: 10  GPVTCGSWIRRPENVNLAVLGRSRRGDSCPSLLQIFSFDPNTTSLFTSPLATFVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ IAV+PSGDDF+CS +NG CKLFE+YG   ++ L+AK++ PLQ  GPQKC++FSVDG
Sbjct: 70  DPIAIAVHPSGDDFLCSLSNGSCKLFELYGHDKNMKLMAKELAPLQGIGPQKCITFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAG +DGHLRIM WPS+R+ILDEPKAHKSV DMDFSLDSEFLA+TSTDGSAR WK E
Sbjct: 130 SKFAAGALDGHLRIMEWPSMRMILDEPKAHKSVRDMDFSLDSEFLASTSTDGSARTWKIE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFSKDGTKPFLF +VQ+GDK+  AV+D+STWNKIGHKRLLR
Sbjct: 190 DGVPLTTLSRNSDEKIELCRFSKDGTKPFLFGSVQKGDKSFTAVWDMSTWNKIGHKRLLR 249

Query: 245 KPASVLSISLDGKYLAM 261
           K ASV+SIS DGKYL+M
Sbjct: 250 KSASVMSISHDGKYLSM 266

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448865|ref|XP_002262948.1| PREDICTED: SEC12-like protein 1-like [Vitis vinifera]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/259 (73%), Positives = 224/259 (86%), Gaps = 2/259 (0%)

Query: 3   GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES 62
           GGG+V C +WI+RPEN+NLV++ +S R +SSP+VLEIFSFDP TTS+ +SPL TYV +E 
Sbjct: 4   GGGSVACAAWIRRPENLNLVIICRSGRRNSSPAVLEIFSFDPMTTSLSSSPLATYVLEE- 62

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV 122
            GDPM +AV+PSGD+ VCSTT G CKLFE+Y    +I LLAKK+  L+  GPQKCL+FSV
Sbjct: 63  -GDPMAVAVHPSGDELVCSTTTGDCKLFELYAQEGNIKLLAKKLNALEGVGPQKCLAFSV 121

Query: 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
           +GSRFA GGVDGHLRI+ WPS++IILDEP+AH S  DMDFSLD+EFLA+TSTDGSARIWK
Sbjct: 122 EGSRFATGGVDGHLRILEWPSMQIILDEPRAHNSFRDMDFSLDTEFLASTSTDGSARIWK 181

Query: 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
             DGV  T LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA+ AV+DISTWNKIGHKRL
Sbjct: 182 INDGVPLTTLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAVTAVWDISTWNKIGHKRL 241

Query: 243 LRKPASVLSISLDGKYLAM 261
           L+KPASV+S+SLDGKYLA+
Sbjct: 242 LKKPASVMSMSLDGKYLAL 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584376|ref|XP_002532922.1| nucleotide binding protein, putative [Ricinus communis] gi|223527315|gb|EEF29464.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/261 (73%), Positives = 220/261 (84%)

Query: 1   MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
             G G VTCGSWI+R +NVNLVVLGKS  ++SS SVL+IFSFDP TTS+  SPL +YV +
Sbjct: 3   QRGRGIVTCGSWIRRSDNVNLVVLGKSRTSNSSSSVLDIFSFDPITTSLAPSPLASYVLE 62

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           E+EGD + IAV+PSGDDF+CSTT GGCKLFE++G  T++ LLAK++PPLQD G QKCL F
Sbjct: 63  ETEGDVVAIAVHPSGDDFICSTTKGGCKLFELHGQETNLKLLAKELPPLQDVGTQKCLVF 122

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           SVDGSRFA+GGVDGHLRI+ WPS RII DE +AHKS  DMD SLDS FLA+TSTDGSARI
Sbjct: 123 SVDGSRFASGGVDGHLRILEWPSQRIIADERRAHKSFRDMDISLDSAFLASTSTDGSARI 182

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           W  EDG   T +TRNSDEKIELCRFSKDGTKPFLFC VQRGDKA  AVYDISTW KIG+K
Sbjct: 183 WNVEDGAPLTTVTRNSDEKIELCRFSKDGTKPFLFCAVQRGDKATTAVYDISTWKKIGYK 242

Query: 241 RLLRKPASVLSISLDGKYLAM 261
           RLL+KPA ++S+SLDGKYLA+
Sbjct: 243 RLLKKPACIMSVSLDGKYLAL 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073440|gb|ACJ85079.1| unknown [Medicago truncatula]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/257 (70%), Positives = 217/257 (84%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R +S P++L+IFSFDP T S+ TSPL  +V +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSKRGNSCPALLQIFSFDPITVSLSTSPLTNFVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D + IAV+PSGDDF+CS +NG CKLFE+YG   ++ LLAK++ PLQ    Q C++FSVDG
Sbjct: 70  DLVAIAVHPSGDDFMCSLSNGSCKLFELYGHEANMKLLAKELTPLQGICSQTCITFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG DGHLRIM WPS+RIILDEP+AHKSV DMDFSLDSEFLA+TSTDGSARIWK E
Sbjct: 130 SKFAAGGSDGHLRIMEWPSMRIILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKVE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFSK GTKPFLF  VQ+GDK+L AV+D+S+WNKIGHKRLLR
Sbjct: 190 DGVPVTTLSRNSDEKIELCRFSKGGTKPFLFGAVQKGDKSLTAVWDMSSWNKIGHKRLLR 249

Query: 245 KPASVLSISLDGKYLAM 261
           K AS +++S DGKYL++
Sbjct: 250 KSASAMAVSHDGKYLSL 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441826|ref|XP_004138683.1| PREDICTED: SEC12-like protein 1-like [Cucumis sativus]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/257 (68%), Positives = 215/257 (83%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G ++CGSWI+RPENVNL ++G+S    SSPS LEIFSFDPK TS+ +SPL  + F+E +G
Sbjct: 9   GPLSCGSWIRRPENVNLALIGRSRPPDSSPSTLEIFSFDPKVTSLSSSPLTEFAFEECDG 68

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D +++ V+PSGD+ VCSTT GGCKLFE+ G   ++ LL K++P L+D GPQ CL+FSVDG
Sbjct: 69  DLVSVTVHPSGDEIVCSTTRGGCKLFELCGQELNVKLLIKELPSLKDVGPQSCLTFSVDG 128

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+ A GGVDGHLRI  WPSLR ILDEP A KSV DMDFSLDSEFLA+TS+DGSAR+WKT+
Sbjct: 129 SKLATGGVDGHLRIFEWPSLRPILDEPNAQKSVRDMDFSLDSEFLASTSSDGSARVWKTD 188

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T LTRN+DEKIELCRFSKDGTKPFLFCTVQ+G+KA+ AV+DIS W +IG+KRLLR
Sbjct: 189 DGVPITTLTRNTDEKIELCRFSKDGTKPFLFCTVQKGEKAVTAVWDISNWKRIGYKRLLR 248

Query: 245 KPASVLSISLDGKYLAM 261
           KPA ++SIS DGKYLA+
Sbjct: 249 KPACIMSISRDGKYLAL 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522724|ref|XP_004168376.1| PREDICTED: LOW QUALITY PROTEIN: SEC12-like protein 1-like [Cucumis sativus]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/257 (68%), Positives = 213/257 (82%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G ++CGSWI+RPENVNL ++G+S    SSPS LEIFSFDPK TS+ +SPL  + F+E +G
Sbjct: 9   GPLSCGSWIRRPENVNLALIGRSRPPDSSPSTLEIFSFDPKVTSLSSSPLTEFAFEECDG 68

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D +++ V+PSGD+ VCSTT GGCKLFE+ G   ++ LL K++P L+D GPQ CL+FSVDG
Sbjct: 69  DLVSVTVHPSGDEIVCSTTRGGCKLFELCGQELNVKLLIKELPSLKDVGPQSCLTFSVDG 128

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+ A GGVDGHLRI  WPSLR ILDEP A KSV DMDFSLDSEFLA+TS+DGSAR+WKT+
Sbjct: 129 SKLATGGVDGHLRIFEWPSLRPILDEPNAQKSVRDMDFSLDSEFLASTSSDGSARVWKTD 188

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T LTR+S  KIELCRFSKDGTKPFLFCTVQ+G+KA+ AV+DIS W +IG+KRLLR
Sbjct: 189 DGVPITTLTRSSGXKIELCRFSKDGTKPFLFCTVQKGEKAVTAVWDISNWKRIGYKRLLR 248

Query: 245 KPASVLSISLDGKYLAM 261
           KPA ++SIS DGKYLA+
Sbjct: 249 KPACIMSISRDGKYLAL 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819930|ref|XP_002877848.1| hypothetical protein ARALYDRAFT_485583 [Arabidopsis lyrata subsp. lyrata] gi|297323686|gb|EFH54107.1| hypothetical protein ARALYDRAFT_485583 [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/261 (65%), Positives = 211/261 (80%), Gaps = 4/261 (1%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
           G V CGSWI+RP+ VN V++ K+S+    + SSP++L IFSFDP T S+ +SPL T+   
Sbjct: 11  GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPVTASLSSSPLATHTLK 70

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           ES+GDP+T++V+P+GD FVCST+ GGCK FE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct: 71  ESDGDPVTVSVHPAGDYFVCSTSKGGCKSFEIVGGATGITILAKELLPLQNAGLQKCMAF 130

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           S DGS+ AAGG+DG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct: 131 SFDGSKLAAGGLDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  L+ VYDISTW K+G K
Sbjct: 191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPLVNVYDISTWKKLGFK 250

Query: 241 RLLRKPASVLSISLDGKYLAM 261
           +L RK AS +++SLDGKY+A+
Sbjct: 251 KLSRKTASTMAVSLDGKYIAL 271

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2083850	398	PHF1 "AT3G52190" [Arabidopsis	0.984	0.645	0.651	4.5e-91
TAIR|locus:2159697	383	AT5G50550 "AT5G50550" [Arabido	0.885	0.603	0.308	2.6e-24
TAIR|locus:2832497	383	AT5G50650 "AT5G50650" [Arabido	0.885	0.603	0.308	2.6e-24
TAIR|locus:2049582	393	STL2P "AT2G01470" [Arabidopsis	0.873	0.580	0.317	7.4e-22
MGI|MGI:1355326	417	Preb "prolactin regulatory ele	0.555	0.347	0.294	5.8e-06
RGD|61929	417	Preb "prolactin regulatory ele	0.551	0.345	0.298	9.8e-06
UNIPROTKB|E2RBH1	418	PREB "Uncharacterized protein"	0.605	0.377	0.306	1.7e-05
GENEDB_PFALCIPARUM|PFL0970w	618	PFL0970w "pre-mRNA splicing fa	0.494	0.208	0.291	3e-05
UNIPROTKB|Q8I5L1	618	PFL0970w "Pre-mRNA splicing fa	0.494	0.208	0.291	3e-05
ZFIN|ZDB-GENE-040426-916	513	smu1 "smu-1 suppressor of mec-	0.367	0.187	0.317	3e-05

TAIR|locus:2083850 PHF1 "AT3G52190" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 170/261 (65%), Positives = 209/261 (80%)

Query:     5 GTVTCGSWIKRPENVNLVVLGKSS--RASS--SPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
             G V CGSWI+RP+ VN V++ K+S  R SS  SP++L IFSFDP T S+ +SPL T+   
Sbjct:    11 GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLK 70

Query:    61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
             +S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct:    71 DSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAF 130

Query:   121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
             S DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct:   131 SFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query:   181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
             WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  ++ VYDISTW K+G K
Sbjct:   191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFK 250

Query:   241 RLLRKPASVLSISLDGKYLAM 261
             +L RK AS +++SLDGKY+A+
Sbjct:   251 KLSRKTASTMAVSLDGKYIAL 271

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006817 "phosphate ion transport" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;IMP

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2159697 AT5G50550 "AT5G50550" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 75/243 (30%), Positives = 115/243 (47%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G     S  P+V+ I   D  T S+   P+   V       P  +A++P     +C+  N
Sbjct:    56 GGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGTDL--PYRMAIHPRQGGLICALPN 113

Query:    85 GGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142
               C+LF+      D N     K +  L+D G Q  LSF+ DG+  A G  DG LR+  WP
Sbjct:   114 S-CRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATGAEDGTLRVFEWP 172

Query:   143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202
             S++ +L+E K H SV  + FS   +FL +       R+W      A   L++  DE    
Sbjct:   173 SMKTLLNESKTHASVKSLTFSESGKFLVSLGAP-LCRVWDVNASAAIASLSKEKDEMFAS 231

Query:   203 CRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKY 258
             CRFS D  G++  ++    QRG   +   +D ++W +   K + R  + S  ++S DGK 
Sbjct:   232 CRFSVDNSGSEVLYVAANTQRGGSII--TWDTTSWRRRSSKLIKRNNSISAFNVSADGKL 289

Query:   259 LAM 261
             LA+
Sbjct:   290 LAV 292

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2832497 AT5G50650 "AT5G50650" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 75/243 (30%), Positives = 115/243 (47%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G     S  P+V+ I   D  T S+   P+   V       P  +A++P     +C+  N
Sbjct:    56 GGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGTDL--PYRMAIHPRQGGLICALPN 113

Query:    85 GGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142
               C+LF+      D N     K +  L+D G Q  LSF+ DG+  A G  DG LR+  WP
Sbjct:   114 S-CRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATGAEDGTLRVFEWP 172

Query:   143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202
             S++ +L+E K H SV  + FS   +FL +       R+W      A   L++  DE    
Sbjct:   173 SMKTLLNESKTHASVKSLTFSESGKFLVSLGAP-LCRVWDVNASAAIASLSKEKDEMFAS 231

Query:   203 CRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKY 258
             CRFS D  G++  ++    QRG   +   +D ++W +   K + R  + S  ++S DGK 
Sbjct:   232 CRFSVDNSGSEVLYVAANTQRGGSII--TWDTTSWRRRSSKLIKRNNSISAFNVSADGKL 289

Query:   259 LAM 261
             LA+
Sbjct:   290 LAV 292

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049582 STL2P "AT2G01470" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 7.4e-22, P = 7.4e-22
 Identities = 78/246 (31%), Positives = 113/246 (45%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G   R+  S +V+ I   D  T S+   PL   V       P  +AV+P     +C+  N
Sbjct:    66 GGEGRSGIS-NVILICRVDLNTNSLSEQPLGRLVVGSDL--PYRMAVHPREGGLICALPN 122

Query:    85 GGCKLF--EVYGGATDINLLAKK---MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139
               CKLF  E      D N   +    +  L+D G Q  L+F+ +GS  AAG  DG LR+ 
Sbjct:   123 S-CKLFHWEDIMSRED-NQAGESEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVF 180

Query:   140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA-RIWKTEDGVAWTFLTRNSDE 198
              WPS+  +L+E +AH SV  + FS   +FL   S  G   R+W      A   L++  DE
Sbjct:   181 KWPSMNTLLNESQAHSSVKCLTFSESGQFLV--SLGGPVCRVWDVNASAAVASLSKEKDE 238

Query:   199 KIELCRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD 255
                 CRFS D  G +  ++    +RG   +    D   W +   K + +   S  ++S D
Sbjct:   239 MFASCRFSVDSAGNEVLYIAANTERGGSIITC--DTKLWKRKWSKPIKKNSISAFNVSAD 296

Query:   256 GKYLAM 261
             GK LA+
Sbjct:   297 GKLLAI 302

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0043090 "amino acid import" evidence=RCA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

MGI|MGI:1355326 Preb "prolactin regulatory element binding" [Mus musculus (taxid:10090)]

 Score = 131 (51.2 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 48/163 (29%), Positives = 74/163 (45%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct:   157 QKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVL-EFKAHEGEIGDLTLGPDGK-LVTVG 214

Query:   174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKAL 225
              D  A +W+ +  V    W      + N+  + + CRF +  D        TVQ   K L
Sbjct:   215 WDFKASVWQKDQLVTQLQWQENGPASSNTPYRYQACRFGQVPDQLGGLRLFTVQIPHKRL 274

Query:   226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261
                    L  +D ST+  +  +    +  S LS+S  G +L +
Sbjct:   275 RQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGL 317

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

RGD|61929 Preb "prolactin regulatory element binding" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 49/164 (29%), Positives = 77/164 (46%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct:   157 QKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVL-EFKAHEGEIGDLALGPDGK-LVTVG 214

Query:   174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSKDGTKPF---LFCTVQRGDKA 224
              D  A +W+ +  V    W      + N+  + + CRF +   +P    LF TVQ   K 
Sbjct:   215 WDFKASVWQKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVPDQPGGLRLF-TVQIPHKR 273

Query:   225 L-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261
             L       L  +D ST+  +  +    +  S L++S  G +L +
Sbjct:   274 LRQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGL 317

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RBH1 PREB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 57/186 (30%), Positives = 86/186 (46%)

Query:    99 INLLAKKMPPLQ-DAGP---QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154
             I L  + +  +Q D  P   QK + F+ D +  A GG DG++RI   PSL  +L E +AH
Sbjct:   138 IELSVENLKAVQTDFSPDPFQKVVCFNHDNTLLATGGTDGYVRIWKVPSLEKVL-EFRAH 196

Query:   155 KSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRF 205
             +  ++ D +L  +  L T   D  A +W+ +  V    W     TF   N+  + + CRF
Sbjct:   197 EGEIE-DLALGPDGKLVTVGWDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRF 253

Query:   206 SKDGTKPF---LFCTVQRGDKAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLD 255
                  +P    LF TVQ   K L       L  +D ST+  +  K    +  S LS+S  
Sbjct:   254 GHVPDQPTRLRLF-TVQIPHKRLRQPPPCYLTAWDGSTFLPLRTKSCGHEVISCLSVSES 312

Query:   256 GKYLAM 261
             G +L +
Sbjct:   313 GTFLGL 318

GO:0005783 "endoplasmic reticulum" evidence=IEA

GENEDB_PFALCIPARUM|PFL0970w PFL0970w "pre-mRNA splicing factor, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 40/137 (29%), Positives = 67/137 (48%)

Query:    50 YTSPLVT-YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MP 107
             Y  P+V  Y+ D S     +++V+PS + F+C + N    ++E  G      L +KK   
Sbjct:   486 YGLPVVVKYISDASMFSITSVSVHPSNNFFLCQSMNNVITVYEATG---KFRLFSKKTFK 542

Query:   108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV-LDMDFS-LD 165
                + G    +S S DG    +G  +G L I +W  + +     KAHK+V +D  +    
Sbjct:   543 GHHNIGYSINVSCSNDGKYVISGDSNGGLFIWNWKKM-VNFKNIKAHKNVCIDCVWHPFK 601

Query:   166 SEFLATTSTDGSARIWK 182
             +  LAT S DG+ ++W+
Sbjct:   602 TSMLATASWDGTIKLWE 618

GO:0005681 "spliceosomal complex" evidence=ISS

UNIPROTKB|Q8I5L1 PFL0970w "Pre-mRNA splicing factor, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 40/137 (29%), Positives = 67/137 (48%)

Query:    50 YTSPLVT-YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MP 107
             Y  P+V  Y+ D S     +++V+PS + F+C + N    ++E  G      L +KK   
Sbjct:   486 YGLPVVVKYISDASMFSITSVSVHPSNNFFLCQSMNNVITVYEATG---KFRLFSKKTFK 542

Query:   108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV-LDMDFS-LD 165
                + G    +S S DG    +G  +G L I +W  + +     KAHK+V +D  +    
Sbjct:   543 GHHNIGYSINVSCSNDGKYVISGDSNGGLFIWNWKKM-VNFKNIKAHKNVCIDCVWHPFK 601

Query:   166 SEFLATTSTDGSARIWK 182
             +  LAT S DG+ ++W+
Sbjct:   602 TSMLATASWDGTIKLWE 618

GO:0005681 "spliceosomal complex" evidence=ISS

ZFIN|ZDB-GENE-040426-916 smu1 "smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 126 (49.4 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 33/104 (31%), Positives = 51/104 (49%)

Query:   116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKS-------VLDMDFSLDSE 167
             +C  FS DG     G VDG + + ++ + +I  D + +A  +       VL M FS D+E
Sbjct:   218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMSFSRDTE 277

Query:   168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
              LAT + DG  ++WK + G       R   + +    FSKD T+
Sbjct:   278 MLATGAQDGKIKVWKIQSGQCLRRYERAHSKGVTCLSFSKDSTQ 321

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYE0	PHF1_ARATH	No assigned EC number	0.6436	0.9846	0.6457	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00102274 hypothetical protein (385 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.002
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
                  G+  ++A +P G+  + S+++G  KL+++  G     L   +           
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN------- 223

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            ++FS DG   A+G  DG +R+    +   +        SV  + +S D + LA+ S DG
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Query: 177 SARIWK 182
           + RIW 
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 18/150 (12%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTD 175
           C++FS DG   A G  DG +++    +  ++    K H   V D+  S D  +LA+ S+D
Sbjct: 14  CVAFSPDGKLLATGSGDGTIKVWDLETGELLR-TLKGHTGPVRDVAASADGTYLASGSSD 72

Query: 176 GSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234
            + R+W  E G    T     S   +    FS DG    L  +    DK  + V+D+ T 
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSY--VSSVAFSPDG--RILSSS--SRDKT-IKVWDVETG 125

Query: 235 NKI----GHKRLLRKPASVLSISLDGKYLA 260
             +    GH        + ++ S DG ++A
Sbjct: 126 KCLTTLRGHT----DWVNSVAFSPDGTFVA 151

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.3 bits (116), Expect = 9e-07
 Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 19/236 (8%)

Query: 32  SSPSVLEIFSFDPKTTSVY---TSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGC 87
              S+L   S    T  ++   T   +    +       ++A +P G      S+ +G  
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180

Query: 88  KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRI 146
           KL+++  G     L     P          L+FS DG    A    DG +R+    + ++
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVS-------SLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206
           +      H   +   FS D   LA+ S+DG+ R+W      +           +    FS
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293

Query: 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLA 260
            DG            D   + ++D+ T   +    L     P S LS S DG  L 
Sbjct: 294 PDGK----LLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 15/180 (8%)

Query: 30  ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNGGCK 88
           + SS   + ++  +        +          EG   +++ +P G   V   + +G  +
Sbjct: 301 SGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 89  LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148
           L+++  G     L                +SFS DG   ++G  DG +R+    +  ++ 
Sbjct: 355 LWDLRTGKPLKTLEGH--------SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208
           +       V  +DFS D + LA+ S+D + R+W  +  +     + +             
Sbjct: 407 NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 27/195 (13%)

Query: 69  IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128
           +A +P G      + +G  K++++  G     L     P        + ++ S DG+  A
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV-------RDVAASADGTYLA 67

Query: 129 AGGVDGHLRIMHWP-SLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDG 186
           +G  D  +R+  W       +     H S V  + FS D   L+++S D + ++W  E G
Sbjct: 68  SGSSDKTIRL--WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125

Query: 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----GHKRL 242
              T L  ++D  +    FS DGT  F+  + Q  D  +  ++D+ T   +    GH   
Sbjct: 126 KCLTTLRGHTDW-VNSVAFSPDGT--FVASSSQ--DGTIK-LWDLRTGKCVATLTGHTG- 178

Query: 243 LRKPASVLSISLDGK 257
                 V S++    
Sbjct: 179 -----EVNSVAFSPD 188

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHW-PSLRIILDEPKAH-KSVLDMDFSLDSEFLATTST 174
            ++FS DG +  +   DG +++  W  S    L   + H   V  + FS D   LA+ S 
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKL--WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239

Query: 175 DGSARIWKTEDGV 187
           DG+ R+W    G 
Sbjct: 240 DGTIRVWDLRTGE 252

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 19/116 (16%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
           K H   V  + FS D + LAT S DG+ ++W  E G     L  ++   +     S DGT
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAASADGT 64

Query: 211 KPFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISL--DGKYLA 260
             +L           + ++D+ T   +    GH       + V S++   DG+ L+
Sbjct: 65  --YLASG---SSDKTIRLWDLETGECVRTLTGHT------SYVSSVAFSPDGRILS 109

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-----DEPKAHKSVLDMDFSLDSEFLAT 171
            ++FS DG    +G  DG +++    +   ++         +   +       +S  LA+
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
           +S DG+ ++W                E +    FS DG    L  +    D   + ++D+
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDG-TIKLWDL 185

Query: 232 STWNKI----GHKRLLRKPASVLSISLDGKYLAM 261
            T   +    GH      P S L+ S DG  L  
Sbjct: 186 RTGKPLSTLAGHTD----PVSSLAFSPDGGLLIA 215

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 23/211 (10%)

Query: 55  VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP 114
                        ++A +P G     S+ +   K+++V  G     L             
Sbjct: 85  CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV------ 138

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHW----PSLRIILDEPKAHKS-VLDMDFSLDSEFL 169
              ++FS DG+  A+   DG +++  W          L     H   V  + FS D E L
Sbjct: 139 -NSVAFSPDGTFVASSSQDGTIKL--WDLRTGKCVATL---TGHTGEVNSVAFSPDGEKL 192

Query: 170 ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229
            ++S+DG+ ++W    G       R  +  +    FS DG    L    + G    + V+
Sbjct: 193 LSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGY--LLASGSEDG---TIRVW 246

Query: 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLA 260
           D+ T   +          + L+ S DGK LA
Sbjct: 247 DLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWK 182
           K H   V  + FS D   LA+ S DG+ R+W 
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWK 182
           K H   V  + FS D ++LA+ S DG+ ++W 
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKP 212
            S+  + FS D E L + S+DG+ ++W  ++G     +    +     +L   S DG   
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 213 FLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAM 261
            L  +        + ++D+ST  K+        +  + L+ S DGK LA 
Sbjct: 126 LLASS---SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.98
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
PTZ00420	568	coronin; Provisional	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.89
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG1539	910	consensus WD repeat protein [General function pred	99.88
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG2139	445	consensus WD40 repeat protein [General function pr	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
KOG0649	325	consensus WD40 repeat protein [General function pr	99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.83
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
PRK05137	435	tolB translocation protein TolB; Provisional	99.83
PRK03629	429	tolB translocation protein TolB; Provisional	99.83
PRK03629	429	tolB translocation protein TolB; Provisional	99.83
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.83
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.83
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.82
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.81
PRK02889	427	tolB translocation protein TolB; Provisional	99.81
PRK04922	433	tolB translocation protein TolB; Provisional	99.81
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.8
PRK04922	433	tolB translocation protein TolB; Provisional	99.8
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.8
PRK02889	427	tolB translocation protein TolB; Provisional	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
PRK05137	435	tolB translocation protein TolB; Provisional	99.78
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
PRK01029	428	tolB translocation protein TolB; Provisional	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
PRK00178	430	tolB translocation protein TolB; Provisional	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
KOG2096	420	consensus WD40 repeat protein [General function pr	99.76
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.76
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.76
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.76
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.75
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.74
KOG2139	445	consensus WD40 repeat protein [General function pr	99.74
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
PRK01029	428	tolB translocation protein TolB; Provisional	99.73
PRK04792	448	tolB translocation protein TolB; Provisional	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
PRK04792	448	tolB translocation protein TolB; Provisional	99.73
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
PRK00178	430	tolB translocation protein TolB; Provisional	99.72
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.69
KOG1310	758	consensus WD40 repeat protein [General function pr	99.69
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.69
KOG4227	609	consensus WD40 repeat protein [General function pr	99.69
KOG1188	376	consensus WD40 repeat protein [General function pr	99.69
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.69
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG1963	792	consensus WD40 repeat protein [General function pr	99.65
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.65
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.65
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.65
PRK04043	419	tolB translocation protein TolB; Provisional	99.64
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
COG4946	668	Uncharacterized protein related to the periplasmic	99.63
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.63
KOG1310	758	consensus WD40 repeat protein [General function pr	99.62
KOG4547	541	consensus WD40 repeat-containing protein [General	99.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.61
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
PRK04043	419	tolB translocation protein TolB; Provisional	99.6
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.6
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.59
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.58
COG4946	668	Uncharacterized protein related to the periplasmic	99.57
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.56
KOG2321	703	consensus WD40 repeat protein [General function pr	99.55
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.54
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.5
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.46
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.45
KOG2315	566	consensus Predicted translation initiation factor	99.44
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.43
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.42
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.42
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.39
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.38
KOG2315	566	consensus Predicted translation initiation factor	99.38
KOG1334	559	consensus WD40 repeat protein [General function pr	99.36
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.33
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.31
KOG2314	698	consensus Translation initiation factor 3, subunit	99.28
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.28
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.28
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.27
KOG1334	559	consensus WD40 repeat protein [General function pr	99.26
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.21
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
KOG2695	425	consensus WD40 repeat protein [General function pr	99.18
KOG2314	698	consensus Translation initiation factor 3, subunit	99.13
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.12
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.12
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.1
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.08
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.07
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.06
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.05
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.05
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.05
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.05
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.03
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.01
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.99
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.98
KOG2695	425	consensus WD40 repeat protein [General function pr	98.98
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.94
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.92
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.92
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.9
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.87
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.87
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.86
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.86
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.86
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.85
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.83
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.83
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.82
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.77
COG3391	381	Uncharacterized conserved protein [Function unknow	98.76
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.75
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.71
PRK02888	635	nitrous-oxide reductase; Validated	98.7
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.69
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.66
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.66
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.66
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.66
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.65
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.64
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.64
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.61
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.58
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.58
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.55
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.55
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.54
KOG3621	726	consensus WD40 repeat-containing protein [General	98.54
COG3391	381	Uncharacterized conserved protein [Function unknow	98.5
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.42
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.41
PRK13616	591	lipoprotein LpqB; Provisional	98.4
PRK02888	635	nitrous-oxide reductase; Validated	98.38
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.37
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.29
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.28
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.26
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.25
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.25
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.25
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.24
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.22
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.21
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.19
PRK13616	591	lipoprotein LpqB; Provisional	98.17
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.15
KOG3621	726	consensus WD40 repeat-containing protein [General	98.14
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.14
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.11
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.05
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.03
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.02
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.01
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.98
KOG2395	644	consensus Protein involved in vacuole import and d	97.98
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.94
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.92
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.91
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.88
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.87
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.83
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.82
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.81
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.78
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.75
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.74
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.72
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.71
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.71
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.7
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.67
KOG2395	644	consensus Protein involved in vacuole import and d	97.64
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.63
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.56
PHA02713	557	hypothetical protein; Provisional	97.56
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.5
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.49
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.48
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.43
PHA03098	534	kelch-like protein; Provisional	97.42
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.38
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.38
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.35
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.33
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.32
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.29
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.26
PRK10115	686	protease 2; Provisional	97.25
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.25
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.24
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.22
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.21
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.17
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.1
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.08
KOG2444	238	consensus WD40 repeat protein [General function pr	97.06
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.05
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.03
KOG2444	238	consensus WD40 repeat protein [General function pr	97.01
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.97
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.95
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	96.93
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.91
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.88
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.85
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.79
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.79
PRK13684	334	Ycf48-like protein; Provisional	96.7
COG5167	776	VID27 Protein involved in vacuole import and degra	96.67
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.61
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.56
PHA02713	557	hypothetical protein; Provisional	96.56
KOG2247	615	consensus WD40 repeat-containing protein [General	96.55
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.55
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.47
PRK10115	686	protease 2; Provisional	96.42
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.34
PHA02790	480	Kelch-like protein; Provisional	96.33
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.32
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.26
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.25
COG4590	733	ABC-type uncharacterized transport system, permeas	96.16
COG5167	776	VID27 Protein involved in vacuole import and degra	96.14
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.11
PRK13684	334	Ycf48-like protein; Provisional	96.05
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.05
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.01
PHA03098	534	kelch-like protein; Provisional	95.99
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.95
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.77
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.68
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.65
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.58
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.52
PHA02790	480	Kelch-like protein; Provisional	95.44
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.38
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.35
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.19
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.19
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.15
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.11
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.88
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.87
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.62
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.46
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.44
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.44
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.27
KOG2247	615	consensus WD40 repeat-containing protein [General	94.25
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.04
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.77
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.59
PF12768	281	Rax2: Cortical protein marker for cell polarity	93.46
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.03
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.01
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.99
PLN02153	341	epithiospecifier protein	92.88
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.6
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.51
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.3
PRK13615	557	lipoprotein LpqB; Provisional	92.12
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	91.79
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.45
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.28
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	91.26
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	91.07
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	90.89
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.85
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.75
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.51
PLN02193	470	nitrile-specifier protein	89.92
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	89.7
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.64
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.62
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.6
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.49
COG4590	733	ABC-type uncharacterized transport system, permeas	89.42
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.41
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	89.28
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.04
PLN02193	470	nitrile-specifier protein	88.71
COG5276	370	Uncharacterized conserved protein [Function unknow	88.06
PRK13613	599	lipoprotein LpqB; Provisional	87.98
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	87.84
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	87.79
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.29
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	87.13
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.03
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.7
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.37
PRK13614	573	lipoprotein LpqB; Provisional	86.07
PLN02153	341	epithiospecifier protein	85.95
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	85.7
COG1520	370	FOG: WD40-like repeat [Function unknown]	85.54
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.36

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-42  Score=252.14  Aligned_cols=229  Identities=18%  Similarity=0.217  Sum_probs=185.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      +++|.|++|+|+   ...+|+|++|.        .+..||+.+...      ....++|...|.|++|+|||+.||+|+.
T Consensus       115 ~e~Vl~~~fsp~---g~~l~tGsGD~--------TvR~WD~~TeTp------~~t~KgH~~WVlcvawsPDgk~iASG~~  177 (480)
T KOG0271|consen  115 GEAVLSVQFSPT---GSRLVTGSGDT--------TVRLWDLDTETP------LFTCKGHKNWVLCVAWSPDGKKIASGSK  177 (480)
T ss_pred             CCcEEEEEecCC---CceEEecCCCc--------eEEeeccCCCCc------ceeecCCccEEEEEEECCCcchhhcccc
Confidence            689999999995   67899999999        888899887654      5678999999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-----CCcEEEEeccCCeEEEEEc-----------------
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHW-----------------  141 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~~~d~-----------------  141 (261)
                      ||+|++||.+++++..+.+      ..|...|++++|.|     ..++|++++.||.++|||+                 
T Consensus       178 dg~I~lwdpktg~~~g~~l------~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT  251 (480)
T KOG0271|consen  178 DGSIRLWDPKTGQQIGRAL------RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT  251 (480)
T ss_pred             CCeEEEecCCCCCcccccc------cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence            9999999998877522211      12344555555543     3345555555555555554                 


Q ss_pred             ------------------------cCc-----------------------------------------------------
Q 024868          142 ------------------------PSL-----------------------------------------------------  144 (261)
Q Consensus       142 ------------------------~~~-----------------------------------------------------  144 (261)
                                              ..|                                                     
T Consensus       252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence                                    110                                                     


Q ss_pred             --------------------------eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC
Q 024868          145 --------------------------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE  198 (261)
Q Consensus       145 --------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  198 (261)
                                                +++.++.+|..-|..+.||||++++|+++.|.+|++||.++|+.+.++.+|-. 
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-  410 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-  410 (480)
T ss_pred             hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-
Confidence                                      01112234555789999999999999999999999999999999999998877 


Q ss_pred             ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       199 ~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +|+.++|+.|.+.     +++++.|.++++||+++.+....+.+|...|.++.|+|||+.++.
T Consensus       411 ~VYqvawsaDsRL-----lVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s  468 (480)
T KOG0271|consen  411 AVYQVAWSADSRL-----LVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS  468 (480)
T ss_pred             eeEEEEeccCccE-----EEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence            5999999999998     799999999999999998888888899999999999999998873

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2e-41  Score=251.40  Aligned_cols=231  Identities=16%  Similarity=0.180  Sum_probs=204.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ...|.++.|+|.. ...-+|+++.||        .+..|+.++...      ...+.+|...|..++|+|+|++|++++.
T Consensus       217 ~~~v~~~~fhP~~-~~~~lat~s~Dg--------tvklw~~~~e~~------l~~l~gH~~RVs~VafHPsG~~L~Tasf  281 (459)
T KOG0272|consen  217 TSRVGAAVFHPVD-SDLNLATASADG--------TVKLWKLSQETP------LQDLEGHLARVSRVAFHPSGKFLGTASF  281 (459)
T ss_pred             ccceeeEEEccCC-CccceeeeccCC--------ceeeeccCCCcc------hhhhhcchhhheeeeecCCCceeeeccc
Confidence            4678899999974 255789999999        555555555432      4568899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |.+-++||+.++...       ...-.|...|.+++|.|||.++++|+.|..-+|||++++..+..+.+|..+|.+++|+
T Consensus       282 D~tWRlWD~~tk~El-------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs  354 (459)
T KOG0272|consen  282 DSTWRLWDLETKSEL-------LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS  354 (459)
T ss_pred             ccchhhcccccchhh-------HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeEC
Confidence            999999999998752       2233467899999999999999999999999999999999999999988999999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  243 (261)
                      |+|..||+|+.|++++|||++..+++.++..|.+ -|+.++|+|+..++    +++++.|+++++|..+++.+++.+.+|
T Consensus       355 PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~f----L~TasyD~t~kiWs~~~~~~~ksLaGH  429 (459)
T KOG0272|consen  355 PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYF----LVTASYDNTVKIWSTRTWSPLKSLAGH  429 (459)
T ss_pred             CCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeE----EEEcccCcceeeecCCCcccchhhcCC
Confidence            9999999999999999999999999999998887 49999999944442    799999999999999999999999999


Q ss_pred             CcCeeEEEEeeCCCEEeC
Q 024868          244 RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       244 ~~~v~~~~~s~dg~~la~  261 (261)
                      .+.|.++..++|++++++
T Consensus       430 e~kV~s~Dis~d~~~i~t  447 (459)
T KOG0272|consen  430 EGKVISLDISPDSQAIAT  447 (459)
T ss_pred             ccceEEEEeccCCceEEE
Confidence            999999999999999874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.9e-41  Score=250.54  Aligned_cols=229  Identities=15%  Similarity=0.200  Sum_probs=204.5

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~   80 (261)
                      +..||..+.|+++   ...+|+|+.+|        .+.+|+......      .+.+.+|+..|.++.|+|.  +..|++
T Consensus       174 d~rPis~~~fS~d---s~~laT~swsG--------~~kvW~~~~~~~------~~~l~gH~~~v~~~~fhP~~~~~~lat  236 (459)
T KOG0272|consen  174 DTRPISGCSFSRD---SKHLATGSWSG--------LVKVWSVPQCNL------LQTLRGHTSRVGAAVFHPVDSDLNLAT  236 (459)
T ss_pred             CCCcceeeEeecC---CCeEEEeecCC--------ceeEeecCCcce------eEEEeccccceeeEEEccCCCccceee
Confidence            4689999999996   67999999999        667777666554      6789999999999999996  668999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~  160 (261)
                      ++.||++++|++.+....       .....|..+|..++|+|+|++|++++.|.+-++||++++..+....+|...|.++
T Consensus       237 ~s~Dgtvklw~~~~e~~l-------~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i  309 (459)
T KOG0272|consen  237 ASADGTVKLWKLSQETPL-------QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI  309 (459)
T ss_pred             eccCCceeeeccCCCcch-------hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence            999999999999886541       2223345789999999999999999999999999999999887778888899999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      +|+|||.++++|+.|..-+|||+++|+++..+.+|.. +|.+++|+|+|..     +++++.|++++|||++..+.+.++
T Consensus       310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~-----lATgs~Dnt~kVWDLR~r~~ly~i  383 (459)
T KOG0272|consen  310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYH-----LATGSSDNTCKVWDLRMRSELYTI  383 (459)
T ss_pred             EecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceE-----EeecCCCCcEEEeeecccccceec
Confidence            9999999999999999999999999999999999776 6999999999998     799999999999999999999999


Q ss_pred             eccCcCeeEEEEee-CCCEEeC
Q 024868          241 RLLRKPASVLSISL-DGKYLAM  261 (261)
Q Consensus       241 ~~~~~~v~~~~~s~-dg~~la~  261 (261)
                      ..|..-|+.+.|+| .|++|++
T Consensus       384 pAH~nlVS~Vk~~p~~g~fL~T  405 (459)
T KOG0272|consen  384 PAHSNLVSQVKYSPQEGYFLVT  405 (459)
T ss_pred             ccccchhhheEecccCCeEEEE
Confidence            99999999999999 6778764

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4e-38  Score=250.01  Aligned_cols=234  Identities=18%  Similarity=0.241  Sum_probs=200.9

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCC-------Ccee----------------cCCeEEeeecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-------TSVY----------------TSPLVTYVFDES   62 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-------~~~~----------------~~~~~~~~~~~~   62 (261)
                      -+.|+.|+++   ..++|.|-.+...      .+|.+++..       ..+.                ........+-+|
T Consensus       380 ~v~ca~fSdd---ssmlA~Gf~dS~i------~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  380 GVTCAEFSDD---SSMLACGFVDSSV------RVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             cceeEeecCC---cchhhccccccEE------EEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            4678888875   4588888777733      566665421       0000                011234458899


Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~  142 (261)
                      .++|....|+|+.++|+++++|+++++|.+.+..+..       ..-.|..+|.++.|+|-|-++|+++.|++.++|...
T Consensus       451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V-------~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV-------IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             CCceeeeeecccccceeeccCCcceeeeecccceeEE-------EecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            9999999999999999999999999999999887522       222567899999999999999999999999999999


Q ss_pred             CceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC
Q 024868          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (261)
Q Consensus       143 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~  222 (261)
                      ...+.+.+.+|...|.|+.|+|+..|+++||.|.+|++||..+|..++.+.+|.. +|.+++|||+|++     +++++.
T Consensus       524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~-----LaSg~e  597 (707)
T KOG0263|consen  524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRY-----LASGDE  597 (707)
T ss_pred             cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCce-----Eeeccc
Confidence            8888888888888999999999999999999999999999999999999998766 7999999999999     799999


Q ss_pred             CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       223 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ||.|.+||+.+++.+..+..|.+.+.++.||.||..||+
T Consensus       598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas  636 (707)
T KOG0263|consen  598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS  636 (707)
T ss_pred             CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe
Confidence            999999999999999999999999999999999999985

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.9e-36  Score=213.89  Aligned_cols=234  Identities=18%  Similarity=0.190  Sum_probs=200.5

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      +..|..+||+|+   .+++|+||-+.        ..-+|+..+..-.........+.+|++-+.+..|-+|+ .|++++.
T Consensus        97 s~WVMtCA~sPS---g~~VAcGGLdN--------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SG  164 (343)
T KOG0286|consen   97 SSWVMTCAYSPS---GNFVACGGLDN--------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSG  164 (343)
T ss_pred             ceeEEEEEECCC---CCeEEecCcCc--------eeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCC
Confidence            467899999996   77999998887        44555544331111223356799999999999998866 5888999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      |.++.+||+++++..       .....|.+.|.++.++| +++.+++|+.|+..++||++.+...+.+.+|...|.+++|
T Consensus       165 D~TCalWDie~g~~~-------~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f  237 (343)
T KOG0286|consen  165 DMTCALWDIETGQQT-------QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF  237 (343)
T ss_pred             CceEEEEEcccceEE-------EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence            999999999998751       23345678999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      .|+|.-+++|++|++.++||++..+.+..+.... ..+|++++||..|++     ++++..|.++.+||.-.++.+..+.
T Consensus       238 fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl-----Lfagy~d~~c~vWDtlk~e~vg~L~  312 (343)
T KOG0286|consen  238 FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL-----LFAGYDDFTCNVWDTLKGERVGVLA  312 (343)
T ss_pred             ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE-----EEeeecCCceeEeeccccceEEEee
Confidence            9999999999999999999999999888886432 347999999999998     6888999999999999999999999


Q ss_pred             ccCcCeeEEEEeeCCCEEeC
Q 024868          242 LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       242 ~~~~~v~~~~~s~dg~~la~  261 (261)
                      +|++.|+++..+|||..|++
T Consensus       313 GHeNRvScl~~s~DG~av~T  332 (343)
T KOG0286|consen  313 GHENRVSCLGVSPDGMAVAT  332 (343)
T ss_pred             ccCCeeEEEEECCCCcEEEe
Confidence            99999999999999998874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=211.49  Aligned_cols=232  Identities=17%  Similarity=0.218  Sum_probs=199.6

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .++|+++.|.++   .+.+++++.||        ++.+||.-+..-      .+.++-....|...+|+|.|+++|+|+-
T Consensus        55 ~~Ki~~~~ws~D---sr~ivSaSqDG--------klIvWDs~TtnK------~haipl~s~WVMtCA~sPSg~~VAcGGL  117 (343)
T KOG0286|consen   55 LNKIYAMDWSTD---SRRIVSASQDG--------KLIVWDSFTTNK------VHAIPLPSSWVMTCAYSPSGNFVACGGL  117 (343)
T ss_pred             ccceeeeEecCC---cCeEEeeccCC--------eEEEEEcccccc------eeEEecCceeEEEEEECCCCCeEEecCc
Confidence            478999999996   67999999999        999999877653      5566667889999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |+.+.||++........ .........|.+.+.++.|-+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.+++++
T Consensus       118 dN~Csiy~ls~~d~~g~-~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~  195 (343)
T KOG0286|consen  118 DNKCSIYPLSTRDAEGN-VRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS  195 (343)
T ss_pred             CceeEEEeccccccccc-ceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence            99999999986532111 11112234567889999998755 68899999999999999999999999999999999999


Q ss_pred             C-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          164 L-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       164 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      | +++.+++|+-|+..++||++.+.+++++.+|.. .|++++|.|+|.-     ++++++|++.++||++..+.+..+..
T Consensus       196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~a-----fatGSDD~tcRlyDlRaD~~~a~ys~  269 (343)
T KOG0286|consen  196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDA-----FATGSDDATCRLYDLRADQELAVYSH  269 (343)
T ss_pred             CCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCCe-----eeecCCCceeEEEeecCCcEEeeecc
Confidence            9 999999999999999999999999999999877 4999999999998     69999999999999999888766553


Q ss_pred             c--CcCeeEEEEeeCCCEEe
Q 024868          243 L--RKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~--~~~v~~~~~s~dg~~la  260 (261)
                      .  ..+|++++||..|++|.
T Consensus       270 ~~~~~gitSv~FS~SGRlLf  289 (343)
T KOG0286|consen  270 DSIICGITSVAFSKSGRLLF  289 (343)
T ss_pred             CcccCCceeEEEcccccEEE
Confidence            2  36899999999999885

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-35  Score=207.60  Aligned_cols=232  Identities=13%  Similarity=0.175  Sum_probs=193.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+.|+.++-.+.  +...++.++.|.        .+..|+...... .-......+++|...|..+..++||++.++++.
T Consensus        15 ~d~Vt~la~~~~--~~~~l~sasrDk--------~ii~W~L~~dd~-~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen   15 TDWVTALAIKIK--NSDILVSASRDK--------TIIVWKLTSDDI-KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             CceEEEEEeecC--CCceEEEcccce--------EEEEEEeccCcc-ccCceeeeeeccceEecceEEccCCceEEeccc
Confidence            467888888776  467888898888        777777655432 123346678999999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc-CCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~  162 (261)
                      |+.+++||+.+++..       .....|...|.+++|+||.+.|++|+.|.+|.+|++............ .+.|.++.|
T Consensus        84 D~~lrlWDl~~g~~t-------~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrf  156 (315)
T KOG0279|consen   84 DGTLRLWDLATGEST-------RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRF  156 (315)
T ss_pred             cceEEEEEecCCcEE-------EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEE
Confidence            999999999998642       233456788999999999999999999999999998655443322222 567999999


Q ss_pred             cCC--CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          163 SLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       163 s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      +|+  ..+|++++.|+.|++||+++-+....+.+|.. .++.+++||||..     .++|+.||.+.+||++.++.+..+
T Consensus       157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGsl-----casGgkdg~~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSL-----CASGGKDGEAMLWDLNEGKNLYSL  230 (315)
T ss_pred             cCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCE-----EecCCCCceEEEEEccCCceeEec
Confidence            997  67999999999999999999999889988876 5999999999998     789999999999999999987544


Q ss_pred             eccCcCeeEEEEeeCCCEEe
Q 024868          241 RLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       241 ~~~~~~v~~~~~s~dg~~la  260 (261)
                       .+...|.+++|+|+.-+|+
T Consensus       231 -~a~~~v~sl~fspnrywL~  249 (315)
T KOG0279|consen  231 -EAFDIVNSLCFSPNRYWLC  249 (315)
T ss_pred             -cCCCeEeeEEecCCceeEe
Confidence             4678999999999987775

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-35  Score=223.87  Aligned_cols=231  Identities=17%  Similarity=0.242  Sum_probs=199.3

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..|++++|+.+   +.++|+|..+|        .+..|+..+..       ...+..|.++|.++.|+..|++|++++.|
T Consensus       236 kdVT~L~Wn~~---G~~LatG~~~G--------~~riw~~~G~l-------~~tl~~HkgPI~slKWnk~G~yilS~~vD  297 (524)
T KOG0273|consen  236 KDVTSLDWNND---GTLLATGSEDG--------EARIWNKDGNL-------ISTLGQHKGPIFSLKWNKKGTYILSGGVD  297 (524)
T ss_pred             CCcceEEecCC---CCeEEEeecCc--------EEEEEecCchh-------hhhhhccCCceEEEEEcCCCCEEEeccCC
Confidence            56899999985   67999999999        88888887765       45688999999999999999999999999


Q ss_pred             CcEEEEEEeCCcccccee----------------------------------eeeCCCCCCCCCeEEEEEeeCCcEEEEe
Q 024868           85 GGCKLFEVYGGATDINLL----------------------------------AKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~  130 (261)
                      +++.+||..++.......                                  .+......|+++|.++.|+|.|.+|+++
T Consensus       298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~  377 (524)
T KOG0273|consen  298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC  377 (524)
T ss_pred             ccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence            999999997665411110                                  0112233477999999999999999999


Q ss_pred             ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCC---------CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceE
Q 024868          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS---------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE  201 (261)
Q Consensus       131 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  201 (261)
                      +.|++++||..........+..|...|+.+.|+|+|         ..+++++.|++|++||+..+.++..+..|.. +|.
T Consensus       378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVy  456 (524)
T KOG0273|consen  378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVY  456 (524)
T ss_pred             cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceE
Confidence            999999999998888878888888899999999965         4789999999999999999999999988766 799


Q ss_pred             EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +++|+|+|++     +++|+.||.|.+|+.++++..+... ..+.|..++|+.+|.+|.
T Consensus       457 svafS~~g~y-----lAsGs~dg~V~iws~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~  509 (524)
T KOG0273|consen  457 SVAFSPNGRY-----LASGSLDGCVHIWSTKTGKLVKSYQ-GTGGIFELCWNAAGDKLG  509 (524)
T ss_pred             EEEecCCCcE-----EEecCCCCeeEeccccchheeEeec-CCCeEEEEEEcCCCCEEE
Confidence            9999999999     7999999999999999999887655 446799999999998875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.3e-35  Score=235.90  Aligned_cols=228  Identities=17%  Similarity=0.217  Sum_probs=194.8

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .+||||.+.|+|+   .+++++++.|.        .+..|...+...      ....++|..+|..+.|+|-|-++|+++
T Consensus       450 H~GPVyg~sFsPd---~rfLlScSED~--------svRLWsl~t~s~------~V~y~GH~~PVwdV~F~P~GyYFatas  512 (707)
T KOG0263|consen  450 HSGPVYGCSFSPD---RRFLLSCSEDS--------SVRLWSLDTWSC------LVIYKGHLAPVWDVQFAPRGYYFATAS  512 (707)
T ss_pred             CCCceeeeeeccc---ccceeeccCCc--------ceeeeeccccee------EEEecCCCcceeeEEecCCceEEEecC
Confidence            5799999999996   67999999999        666666666554      456789999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .|++.++|........       .....|-..|.|+.|+|+..++++|+.|.++++||+.+|..++.+.+|.++|.+++|
T Consensus       513 ~D~tArLWs~d~~~Pl-------RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~  585 (707)
T KOG0263|consen  513 HDQTARLWSTDHNKPL-------RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF  585 (707)
T ss_pred             CCceeeeeecccCCch-------hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence            9999999999876541       222345678999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-------
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-------  235 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-------  235 (261)
                      ||+|++|++|+.|+.|.+||+.+++.+..+.+|.+ .|.++.|+.+|..     +++++.|++|++||+..-.       
T Consensus       586 Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~v-----Lasgg~DnsV~lWD~~~~~~~~~~~~  659 (707)
T KOG0263|consen  586 SPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNV-----LASGGADNSVRLWDLTKVIELLNLGH  659 (707)
T ss_pred             cCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCE-----EEecCCCCeEEEEEchhhcccccccc
Confidence            99999999999999999999999999999999955 6999999999998     7999999999999986321       


Q ss_pred             -----------------EEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          236 -----------------KIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       236 -----------------~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                                       .+..+.....+|..+.|...+-.|+
T Consensus       660 ~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~  701 (707)
T KOG0263|consen  660 ISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLA  701 (707)
T ss_pred             cccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEE
Confidence                             2334444556788888887665444

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-35  Score=205.98  Aligned_cols=226  Identities=15%  Similarity=0.162  Sum_probs=186.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      +..|..++.+++   .++.++++.|+        .+..||..+++.      .+.+.+|...|.+++|++|.+.+++|+.
T Consensus        63 sH~v~dv~~s~d---g~~alS~swD~--------~lrlWDl~~g~~------t~~f~GH~~dVlsva~s~dn~qivSGSr  125 (315)
T KOG0279|consen   63 SHFVSDVVLSSD---GNFALSASWDG--------TLRLWDLATGES------TRRFVGHTKDVLSVAFSTDNRQIVSGSR  125 (315)
T ss_pred             ceEecceEEccC---CceEEeccccc--------eEEEEEecCCcE------EEEEEecCCceEEEEecCCCceeecCCC
Confidence            456777778875   67889999999        999999988765      6789999999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      |.+|++|+...... ..     .....+.+.|.++.|+|+  ..+|++++.|+++++||+++.+....+.+|.+.+..+.
T Consensus       126 DkTiklwnt~g~ck-~t-----~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~  199 (315)
T KOG0279|consen  126 DKTIKLWNTLGVCK-YT-----IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVT  199 (315)
T ss_pred             cceeeeeeecccEE-EE-----EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEE
Confidence            99999999987643 11     111222678999999997  67899999999999999999998888888889999999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      +||||.+.++|+.||.+.+||++.++.+..+..  ...|.+++|+|+.-+     ++. ..+..|+|||+.++..+..+.
T Consensus       200 vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a--~~~v~sl~fspnryw-----L~~-at~~sIkIwdl~~~~~v~~l~  271 (315)
T KOG0279|consen  200 VSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPNRYW-----LCA-ATATSIKIWDLESKAVVEELK  271 (315)
T ss_pred             ECCCCCEEecCCCCceEEEEEccCCceeEeccC--CCeEeeEEecCCcee-----Eee-ccCCceEEEeccchhhhhhcc
Confidence            999999999999999999999999999877763  346999999998765     222 333459999999887765443


Q ss_pred             cc---------CcCeeEEEEeeCCCEEe
Q 024868          242 LL---------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       242 ~~---------~~~v~~~~~s~dg~~la  260 (261)
                      ..         .....+++|++||+.|.
T Consensus       272 ~d~~g~s~~~~~~~clslaws~dG~tLf  299 (315)
T KOG0279|consen  272 LDGIGPSSKAGDPICLSLAWSADGQTLF  299 (315)
T ss_pred             ccccccccccCCcEEEEEEEcCCCcEEE
Confidence            22         12356789999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.8e-34  Score=200.29  Aligned_cols=227  Identities=12%  Similarity=0.174  Sum_probs=187.0

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      +.|..+...|+   ..++|+|+..         +|..||..+..    +.+...+.+|+..|+++.|..+|+++++|++|
T Consensus        41 sqVNrLeiTpd---k~~LAaa~~q---------hvRlyD~~S~n----p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD  104 (311)
T KOG0315|consen   41 SQVNRLEITPD---KKDLAAAGNQ---------HVRLYDLNSNN----PNPVATFEGHTKNVTAVGFQCDGRWMYTGSED  104 (311)
T ss_pred             cceeeEEEcCC---cchhhhccCC---------eeEEEEccCCC----CCceeEEeccCCceEEEEEeecCeEEEecCCC
Confidence            44566666664   4455555432         57788887665    23466789999999999999999999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc-ccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s  163 (261)
                      |+++|||++...+        ...+.+..+|+++..+|+...|+++..+|.|++||+........+. .....|.++...
T Consensus       105 gt~kIWdlR~~~~--------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~  176 (311)
T KOG0315|consen  105 GTVKIWDLRSLSC--------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM  176 (311)
T ss_pred             ceEEEEeccCccc--------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence            9999999998654        5566778999999999999999999999999999998775544443 333489999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCC------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-eE
Q 024868          164 LDSEFLATTSTDGSARIWKTEDG------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NK  236 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~  236 (261)
                      |||.+++.+...|..++|++-+.      +++..++.|.. .+..+.+|||+++     +++++.|.+++||+.++. +.
T Consensus       177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~C~lSPd~k~-----lat~ssdktv~iwn~~~~~kl  250 (311)
T KOG0315|consen  177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG-HILRCLLSPDVKY-----LATCSSDKTVKIWNTDDFFKL  250 (311)
T ss_pred             CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc-eEEEEEECCCCcE-----EEeecCCceEEEEecCCceee
Confidence            99999999999999999998754      35566777766 4888899999999     799999999999999987 55


Q ss_pred             EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          237 IGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ...+..|+..+++.+||.||+||++
T Consensus       251 e~~l~gh~rWvWdc~FS~dg~YlvT  275 (311)
T KOG0315|consen  251 ELVLTGHQRWVWDCAFSADGEYLVT  275 (311)
T ss_pred             EEEeecCCceEEeeeeccCccEEEe
Confidence            5567788889999999999999974

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.3e-35  Score=220.18  Aligned_cols=242  Identities=18%  Similarity=0.247  Sum_probs=188.9

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEee--ecC----CCCCceEEEECCCCC
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV--FDE----SEGDPMTIAVNPSGD   76 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~----~~~~v~~~~~~~~~~   76 (261)
                      ...+|++++|+|..  ..++++|+++...      ++|..-.+...........+.  ..+    .+..|++++|+.+|.
T Consensus       177 ~~~~V~~~~WnP~~--~~llasg~~~s~a------ri~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~  248 (524)
T KOG0273|consen  177 HESEVFICAWNPLR--DGLLASGSGDSTA------RIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT  248 (524)
T ss_pred             CCCceEEEecCchh--hhhhhccCCccce------eeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence            45789999999963  4578888877733      333332211111110000111  111    235799999999999


Q ss_pred             eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE---------
Q 024868           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---------  147 (261)
Q Consensus        77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~---------  147 (261)
                      .||+|+.||.+++|+......        ...-.|+++|.++.|+.+|.+|++++.|+++.+||..++...         
T Consensus       249 ~LatG~~~G~~riw~~~G~l~--------~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~  320 (524)
T KOG0273|consen  249 LLATGSEDGEARIWNKDGNLI--------STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP  320 (524)
T ss_pred             eEEEeecCcEEEEEecCchhh--------hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence            999999999999999987653        334457899999999999999999999999999998544321         


Q ss_pred             --------------------------------eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec
Q 024868          148 --------------------------------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN  195 (261)
Q Consensus       148 --------------------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  195 (261)
                                                      ..+.+|+++|.++.|+|.|.+|+++++|++++||.+........+..|
T Consensus       321 ~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H  400 (524)
T KOG0273|consen  321 ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH  400 (524)
T ss_pred             ccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh
Confidence                                            233467889999999999999999999999999999999998999888


Q ss_pred             CCCceEEEEEecCCCcc----eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          196 SDEKIELCRFSKDGTKP----FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       196 ~~~~v~~~~~~p~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .. .|..+.|+|.|...    .=..+++++.|++|++||+..+.++..+..|..+|++++|||+|+|||+
T Consensus       401 sk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs  469 (524)
T KOG0273|consen  401 SK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS  469 (524)
T ss_pred             cc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence            76 49999999976420    0011588899999999999999999999999999999999999999984

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.3e-36  Score=221.89  Aligned_cols=223  Identities=16%  Similarity=0.203  Sum_probs=194.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .-+|..+.|.|+   ++.+++|+..|        +.-.|+...-.+      +..++.|...|.++.|++++.++++|+.
T Consensus        96 kc~V~~v~WtPe---GRRLltgs~SG--------EFtLWNg~~fnF------EtilQaHDs~Vr~m~ws~~g~wmiSgD~  158 (464)
T KOG0284|consen   96 KCPVNVVRWTPE---GRRLLTGSQSG--------EFTLWNGTSFNF------ETILQAHDSPVRTMKWSHNGTWMISGDK  158 (464)
T ss_pred             ccceeeEEEcCC---CceeEeecccc--------cEEEecCceeeH------HHHhhhhcccceeEEEccCCCEEEEcCC
Confidence            358899999995   56788888888        777777754443      5568899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      +|.|++|+..-...        ..... |...|++++|+|+...|++++.||+|+|||....+....+.+|...|.+++|
T Consensus       159 gG~iKyWqpnmnnV--------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdW  230 (464)
T KOG0284|consen  159 GGMIKYWQPNMNNV--------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDW  230 (464)
T ss_pred             CceEEecccchhhh--------HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceecc
Confidence            99999999876542        11222 3489999999999999999999999999999888776677777778999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      +|...+|++++.|+.|++||.++++++.++..|.. .|..+.|+|++++     +++++.|..+++||+++.+.+..+.+
T Consensus       231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~-----Llt~skD~~~kv~DiR~mkEl~~~r~  304 (464)
T KOG0284|consen  231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNW-----LLTGSKDQSCKVFDIRTMKELFTYRG  304 (464)
T ss_pred             CCccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCe-----eEEccCCceEEEEehhHhHHHHHhhc
Confidence            99999999999999999999999999999998877 4999999999988     79999999999999998888888899


Q ss_pred             cCcCeeEEEEeeCCC
Q 024868          243 LRKPASVLSISLDGK  257 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~  257 (261)
                      |...+.+++|+|-..
T Consensus       305 Hkkdv~~~~WhP~~~  319 (464)
T KOG0284|consen  305 HKKDVTSLTWHPLNE  319 (464)
T ss_pred             chhhheeeccccccc
Confidence            999999999999544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=9.5e-33  Score=202.00  Aligned_cols=229  Identities=15%  Similarity=0.155  Sum_probs=194.6

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|++++.+|   +.+++++||+|.        ..+.|+..++.+      ...+.+|.+.|+++.|+.+|.+||+|+
T Consensus        63 H~~svFavsl~P---~~~l~aTGGgDD--------~AflW~~~~ge~------~~eltgHKDSVt~~~FshdgtlLATGd  125 (399)
T KOG0296|consen   63 HTDSVFAVSLHP---NNNLVATGGGDD--------LAFLWDISTGEF------AGELTGHKDSVTCCSFSHDGTLLATGD  125 (399)
T ss_pred             cCCceEEEEeCC---CCceEEecCCCc--------eEEEEEccCCcc------eeEecCCCCceEEEEEccCceEEEecC
Confidence            467899999999   378999999999        999999988886      778999999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .+|.|+||+..++.....+.       ..-..+.-+.|+|-+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|
T Consensus       126 msG~v~v~~~stg~~~~~~~-------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f  198 (399)
T KOG0296|consen  126 MSGKVLVFKVSTGGEQWKLD-------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF  198 (399)
T ss_pred             CCccEEEEEcccCceEEEee-------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence            99999999999987633332       22456788999999999999999999999999987776777888889999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC----------------------------------------------
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS----------------------------------------------  196 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------------------------------------  196 (261)
                      .|+|+.++++..||+|++||+++++++..+....                                              
T Consensus       199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l  278 (399)
T KOG0296|consen  199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL  278 (399)
T ss_pred             cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence            9999999999999999999999888766654100                                              


Q ss_pred             ------------------------------------------------CCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868          197 ------------------------------------------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       197 ------------------------------------------------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                                                                      ..+|..+.|.+ ..+     +++++.+|.|+.
T Consensus       279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~-----l~t~c~~g~v~~  352 (399)
T KOG0296|consen  279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDY-----LLTACANGKVRQ  352 (399)
T ss_pred             cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cch-----heeeccCceEEe
Confidence                                                            01133445544 333     577889999999


Q ss_pred             EECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ||.++|+++..+.+|...|.+++++|+++++++
T Consensus       353 wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT  385 (399)
T KOG0296|consen  353 WDARTGQLKFTYTGHQMGILDFALSPQKRLVVT  385 (399)
T ss_pred             eeccccceEEEEecCchheeEEEEcCCCcEEEE
Confidence            999999999999999999999999999998864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.9e-33  Score=223.07  Aligned_cols=231  Identities=16%  Similarity=0.260  Sum_probs=191.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ...|+|+.|+++   +..++.+..++        .+..|+......    .....+.+|...|.+++|+|+++++++++.
T Consensus       159 ~~sv~~~~fs~~---g~~l~~~~~~~--------~i~~~~~~~~~~----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  159 CPSVTCVDFSPD---GRALAAASSDG--------LIRIWKLEGIKS----NLLRELSGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             cCceEEEEEcCC---CCeEEEccCCC--------cEEEeecccccc----hhhccccccccceeeeEECCCCcEEEEecC
Confidence            467899999996   45688888888        677777644441    114456889999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |+++++||+.......      .....|...|++++|+|+++++++|+.|++|++||+++++....+..|.+.|.+++|+
T Consensus       224 D~tiriwd~~~~~~~~------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~  297 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNL------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS  297 (456)
T ss_pred             CceEEEeeccCCCeEE------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence            9999999994432211      2223567899999999999999999999999999999999998999999999999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCc--EEEEEeecCCC-ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~-~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      +++++|++++.|+.|+|||+.+++  +...+..+... +++.++|+|++++     ++++..|+.+++||+..++.+...
T Consensus       298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-----ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-----LLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-----EEEecCCCeEEEEEccCCcceeee
Confidence            999999999999999999999999  56777766655 6999999999999     788999999999999999888777


Q ss_pred             eccCcC---eeEEEEeeCCCEEe
Q 024868          241 RLLRKP---ASVLSISLDGKYLA  260 (261)
Q Consensus       241 ~~~~~~---v~~~~~s~dg~~la  260 (261)
                      ..|...   +.+...+++|+++.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~  395 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIY  395 (456)
T ss_pred             cccCCcceeEecccccCCCCeEE
Confidence            777654   33445567777765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-34  Score=210.77  Aligned_cols=187  Identities=18%  Similarity=0.259  Sum_probs=164.9

Q ss_pred             EEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        55 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      ....+.+|.++|.+++|+|+|..|++|+.|.++++||+.+..+       ....-.|...|.+++|+|||+.||+|+.||
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------~~t~KgH~~WVlcvawsPDgk~iASG~~dg  179 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------LFTCKGHKNWVLCVAWSPDGKKIASGSKDG  179 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------ceeecCCccEEEEEEECCCcchhhccccCC
Confidence            3457889999999999999999999999999999999998764       122334678999999999999999999999


Q ss_pred             eEEEEEccCceEEee-ccccCCceeEEEEcC-----CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecC
Q 024868          135 HLRIMHWPSLRIILD-EPKAHKSVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~  208 (261)
                      +|++||.++++++.. +.+|...|.+++|.|     ..++||+++.||.++|||+..++++..+.+|.. +|+|++|--+
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~  258 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE  258 (480)
T ss_pred             eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC
Confidence            999999999887654 455667899999976     567999999999999999999999999999877 6999999766


Q ss_pred             CCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d  255 (261)
                      |-      +++++.|++|++|+...|.....+.+|...|+.++.+.|
T Consensus       259 gl------iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd  299 (480)
T KOG0271|consen  259 GL------IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD  299 (480)
T ss_pred             ce------EEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence            64      599999999999999999999899999999999998854

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-32  Score=214.89  Aligned_cols=228  Identities=15%  Similarity=0.223  Sum_probs=185.6

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCC-CCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSS-RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..+|..++|+..   +..+|.|+.. |      .+-||.|..  ...      ....++|...+.+++++|||+++++|+
T Consensus       307 ~~~I~t~~~N~t---GDWiA~g~~klg------QLlVweWqs--EsY------VlKQQgH~~~i~~l~YSpDgq~iaTG~  369 (893)
T KOG0291|consen  307 DQKILTVSFNST---GDWIAFGCSKLG------QLLVWEWQS--ESY------VLKQQGHSDRITSLAYSPDGQLIATGA  369 (893)
T ss_pred             cceeeEEEeccc---CCEEEEcCCccc------eEEEEEeec--cce------eeeccccccceeeEEECCCCcEEEecc
Confidence            468888889875   5588887764 4      234555544  333      345778999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC-ceeEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMD  161 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~  161 (261)
                      +||+|+|||..++-+.       .....|...|+.+.|+..|+.+++++-||+|+.||+.....-+.+..... ...+++
T Consensus       370 eDgKVKvWn~~SgfC~-------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva  442 (893)
T KOG0291|consen  370 EDGKVKVWNTQSGFCF-------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA  442 (893)
T ss_pred             CCCcEEEEeccCceEE-------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE
Confidence            9999999999998762       22334678999999999999999999999999999988877555544333 577899


Q ss_pred             EcCCCCEEEEecCCC-cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          162 FSLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      ..|.|..+.+|+.|. .|.+|++++|+.+..+.+|.+ ||.+++|+|++..     +++++.|.+|++||+-........
T Consensus       443 vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~-----LaS~SWDkTVRiW~if~s~~~vEt  516 (893)
T KOG0291|consen  443 VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSL-----LASGSWDKTVRIWDIFSSSGTVET  516 (893)
T ss_pred             EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCe-----EEeccccceEEEEEeeccCceeee
Confidence            999999999999875 699999999999999998866 7999999999998     799999999999998654322223


Q ss_pred             eccCcCeeEEEEeeCCCEEeC
Q 024868          241 RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       241 ~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ......+..++|+|||+-||+
T Consensus       517 l~i~sdvl~vsfrPdG~elaV  537 (893)
T KOG0291|consen  517 LEIRSDVLAVSFRPDGKELAV  537 (893)
T ss_pred             EeeccceeEEEEcCCCCeEEE
Confidence            345678999999999999885

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8e-34  Score=210.39  Aligned_cols=229  Identities=13%  Similarity=0.163  Sum_probs=196.6

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEECCCCCeEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~   81 (261)
                      ...||.++.|+++   ...+++|..+|        .|..|++.-..+       .....| ...|.+++|+|+...++++
T Consensus       137 HDs~Vr~m~ws~~---g~wmiSgD~gG--------~iKyWqpnmnnV-------k~~~ahh~eaIRdlafSpnDskF~t~  198 (464)
T KOG0284|consen  137 HDSPVRTMKWSHN---GTWMISGDKGG--------MIKYWQPNMNNV-------KIIQAHHAEAIRDLAFSPNDSKFLTC  198 (464)
T ss_pred             hcccceeEEEccC---CCEEEEcCCCc--------eEEecccchhhh-------HHhhHhhhhhhheeccCCCCceeEEe
Confidence            4579999999996   67899999999        788888766553       234444 4899999999998999999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      ++||+|+|||....+..       .....|.-.|.+++|+|...+|++++.|..|++||.+++.++..+..|...|..+.
T Consensus       199 SdDg~ikiWdf~~~kee-------~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  199 SDDGTIKIWDFRMPKEE-------RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK  271 (464)
T ss_pred             cCCCeEEEEeccCCchh-------heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence            99999999999876642       22234556899999999999999999999999999999999998888889999999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee-
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-  240 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-  240 (261)
                      |+|++++|++++.|..++++|+++.+.++++.+|... ++++.|+|-..-+    +.+++.||.|..|.+...+++..+ 
T Consensus       272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-v~~~~WhP~~~~l----ftsgg~Dgsvvh~~v~~~~p~~~i~  346 (464)
T KOG0284|consen  272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-VTSLTWHPLNESL----FTSGGSDGSVVHWVVGLEEPLGEIP  346 (464)
T ss_pred             EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-heeeccccccccc----eeeccCCCceEEEeccccccccCCC
Confidence            9999999999999999999999999989999988774 9999999988875    588999999999999855655443 


Q ss_pred             eccCcCeeEEEEeeCCCEEeC
Q 024868          241 RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       241 ~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ..|...|++++|+|=|-.||+
T Consensus       347 ~AHd~~iwsl~~hPlGhil~t  367 (464)
T KOG0284|consen  347 PAHDGEIWSLAYHPLGHILAT  367 (464)
T ss_pred             cccccceeeeeccccceeEee
Confidence            367889999999999988874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-32  Score=201.56  Aligned_cols=233  Identities=15%  Similarity=0.144  Sum_probs=202.5

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .+|+.+-|+|.   ..++++++.+.        .|..||..++++      ...+++|++.+.+++|+..|+++++++.|
T Consensus       109 ~~vt~v~~hp~---~~~v~~as~d~--------tikv~D~~tg~~------e~~LrGHt~sv~di~~~a~Gk~l~tcSsD  171 (406)
T KOG0295|consen  109 SSVTRVIFHPS---EALVVSASEDA--------TIKVFDTETGEL------ERSLRGHTDSVFDISFDASGKYLATCSSD  171 (406)
T ss_pred             cceeeeeeccC---ceEEEEecCCc--------eEEEEEccchhh------hhhhhccccceeEEEEecCccEEEecCCc
Confidence            57888888885   56888888888        999999999987      67899999999999999999999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  164 (261)
                      -.+++||........      .....|...|.++.|-|.|.+|++++.|.+|+.|++.++..+..+.+|...|..++.+.
T Consensus       172 l~~~LWd~~~~~~c~------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~  245 (406)
T KOG0295|consen  172 LSAKLWDFDTFFRCI------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ  245 (406)
T ss_pred             cchhheeHHHHHHHH------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence            889999998743211      22334567899999999999999999999999999999999999999989999999999


Q ss_pred             CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE----------EEEEeeCCCcEEEEEECCCC
Q 024868          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL----------FCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~----------~~~~~~~~d~~i~~~d~~~~  234 (261)
                      ||.++++++.|.++++|-+.++++...+..|.. +|.+++|.|...+.-+          -.+.+++.|++|++||+.++
T Consensus       246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg  324 (406)
T KOG0295|consen  246 DGTIIASCSNDQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG  324 (406)
T ss_pred             CeeEEEecCCCceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence            999999999999999999999988888887755 7999999885322000          01688999999999999999


Q ss_pred             eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          235 NKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .++.++.+|...|.+++|+|.|+||++
T Consensus       325 ~cL~tL~ghdnwVr~~af~p~Gkyi~S  351 (406)
T KOG0295|consen  325 MCLFTLVGHDNWVRGVAFSPGGKYILS  351 (406)
T ss_pred             eEEEEEecccceeeeeEEcCCCeEEEE
Confidence            999999999999999999999999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.8e-32  Score=217.34  Aligned_cols=229  Identities=17%  Similarity=0.215  Sum_probs=194.6

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCC-CCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK-TTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...|.+++|+|++   .++++++.|.        .+++||.. ....      ...+.+|...|++++|+|+++++++|+
T Consensus       203 ~~~v~~~~fs~d~---~~l~s~s~D~--------tiriwd~~~~~~~------~~~l~gH~~~v~~~~f~p~g~~i~Sgs  265 (456)
T KOG0266|consen  203 TRGVSDVAFSPDG---SYLLSGSDDK--------TLRIWDLKDDGRN------LKTLKGHSTYVTSVAFSPDGNLLVSGS  265 (456)
T ss_pred             ccceeeeEECCCC---cEEEEecCCc--------eEEEeeccCCCeE------EEEecCCCCceEEEEecCCCCEEEEec
Confidence            4679999999974   4999999999        89999983 3333      667889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--EeeccccCC--cee
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHK--SVL  158 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~--~v~  158 (261)
                      .|++|++||++++.+.       .....|.+.|.+++|++++++|++++.|+.|++||+.++..  ...+..+..  ++.
T Consensus       266 ~D~tvriWd~~~~~~~-------~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  338 (456)
T KOG0266|consen  266 DDGTVRIWDVRTGECV-------RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVT  338 (456)
T ss_pred             CCCcEEEEeccCCeEE-------EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCcee
Confidence            9999999999996652       22234567999999999999999999999999999999883  344444443  589


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC--ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE--KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      ++.|+|++.++++++.|+.+++||+..+.....+..|...  .+.+...++.+++     +.+++.|+.|++||+.++..
T Consensus       339 ~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~sg~~d~~v~~~~~~s~~~  413 (456)
T KOG0266|consen  339 SVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL-----IYSGSEDGSVYVWDSSSGGI  413 (456)
T ss_pred             EEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe-----EEEEeCCceEEEEeCCccch
Confidence            9999999999999999999999999999999998888775  3445556778888     79999999999999999888


Q ss_pred             Eeeeecc-CcCeeEEEEeeCCCEEeC
Q 024868          237 IGHKRLL-RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       237 ~~~~~~~-~~~v~~~~~s~dg~~la~  261 (261)
                      +..+..| ...+..+.++|..+++++
T Consensus       414 ~~~l~~h~~~~~~~~~~~~~~~~~~s  439 (456)
T KOG0266|consen  414 LQRLEGHSKAAVSDLSSHPTENLIAS  439 (456)
T ss_pred             hhhhcCCCCCceeccccCCCcCeeee
Confidence            8888888 788899999999888763

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=8.6e-31  Score=182.94  Aligned_cols=219  Identities=19%  Similarity=0.260  Sum_probs=181.7

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .-|+.+.|..+   .....+|+.||        .+.+||......      .. .-.|..+|+++..+|+...|+++..+
T Consensus        84 kNVtaVgF~~d---grWMyTgseDg--------t~kIWdlR~~~~------qR-~~~~~spVn~vvlhpnQteLis~dqs  145 (311)
T KOG0315|consen   84 KNVTAVGFQCD---GRWMYTGSEDG--------TVKIWDLRSLSC------QR-NYQHNSPVNTVVLHPNQTELISGDQS  145 (311)
T ss_pred             CceEEEEEeec---CeEEEecCCCc--------eEEEEeccCccc------ch-hccCCCCcceEEecCCcceEEeecCC
Confidence            45788888875   67899999999        888888877443      22 33467999999999999999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce------EEeeccccCCcee
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR------IILDEPKAHKSVL  158 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~v~  158 (261)
                      |.|++||+....+...+..      .....|.++...|||++++.+...|..++|++.+..      ++.++..|.+.+.
T Consensus       146 g~irvWDl~~~~c~~~liP------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il  219 (311)
T KOG0315|consen  146 GNIRVWDLGENSCTHELIP------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL  219 (311)
T ss_pred             CcEEEEEccCCccccccCC------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence            9999999998765333222      124689999999999999999999999999986543      3455667778899


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                      .+.+|||+++|++++.|.+++||+.++. +....+.+|.. .++.++||.||+|     +++++.|+.+++||++.++.+
T Consensus       220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r-WvWdc~FS~dg~Y-----lvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR-WVWDCAFSADGEY-----LVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             EEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc-eEEeeeeccCccE-----EEecCCCCceeecccccCcee
Confidence            9999999999999999999999999987 55566666654 8999999999999     799999999999999999999


Q ss_pred             eeeeccCcCeeEEEEe
Q 024868          238 GHKRLLRKPASVLSIS  253 (261)
Q Consensus       238 ~~~~~~~~~v~~~~~s  253 (261)
                      ....+|.....+++..
T Consensus       294 ~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  294 RQYQGHHKAAVCVALN  309 (311)
T ss_pred             eecCCcccccEEEEee
Confidence            8888887776666653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.7e-30  Score=197.09  Aligned_cols=228  Identities=21%  Similarity=0.319  Sum_probs=191.4

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|++++|+|+   ..++++++.++        .+..|+..+...      ...+..|...+..+.|+|+++.+++++
T Consensus         8 h~~~i~~~~~~~~---~~~l~~~~~~g--------~i~i~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~   70 (289)
T cd00200           8 HTGGVTCVAFSPD---GKLLATGSGDG--------TIKVWDLETGEL------LRTLKGHTGPVRDVAASADGTYLASGS   70 (289)
T ss_pred             cCCCEEEEEEcCC---CCEEEEeecCc--------EEEEEEeeCCCc------EEEEecCCcceeEEEECCCCCEEEEEc
Confidence            4689999999996   56888888888        777787766543      445677888899999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .+|.+++|++...+....       ...+...+.++.|+|+++++++++.++.+.+||+++++....+..+...+.++.|
T Consensus        71 ~~~~i~i~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  143 (289)
T cd00200          71 SDKTIRLWDLETGECVRT-------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF  143 (289)
T ss_pred             CCCeEEEEEcCcccceEE-------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence            999999999987543111       1134568999999999889988888999999999988877777767778999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      +|+++++++++.|+.+++||+++++.+..+..+.. .+.++.|+|+++.     +++++.++.+++||+++++.+..+..
T Consensus       144 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~-----l~~~~~~~~i~i~d~~~~~~~~~~~~  217 (289)
T cd00200         144 SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEK-----LLSSSSDGTIKLWDLSTGKCLGTLRG  217 (289)
T ss_pred             cCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCE-----EEEecCCCcEEEEECCCCceecchhh
Confidence            99999999998899999999998888888876554 6999999999987     56677799999999999888877767


Q ss_pred             cCcCeeEEEEeeCCCEEe
Q 024868          243 LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la  260 (261)
                      +...+.++.|+|++.+++
T Consensus       218 ~~~~i~~~~~~~~~~~~~  235 (289)
T cd00200         218 HENGVNSVAFSPDGYLLA  235 (289)
T ss_pred             cCCceEEEEEcCCCcEEE
Confidence            888999999999987775

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.1e-31  Score=187.47  Aligned_cols=236  Identities=12%  Similarity=0.192  Sum_probs=195.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+.|+++.|.|+   +..+|+||.|.        .|+.|+.....     .....+++|++.|+.+.|.+|++.+++++.
T Consensus        47 ~geI~~~~F~P~---gs~~aSgG~Dr--------~I~LWnv~gdc-----eN~~~lkgHsgAVM~l~~~~d~s~i~S~gt  110 (338)
T KOG0265|consen   47 KGEIYTIKFHPD---GSCFASGGSDR--------AIVLWNVYGDC-----ENFWVLKGHSGAVMELHGMRDGSHILSCGT  110 (338)
T ss_pred             cceEEEEEECCC---CCeEeecCCcc--------eEEEEeccccc-----cceeeeccccceeEeeeeccCCCEEEEecC
Confidence            689999999995   67999999999        88888754322     113467799999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceee-----------------------------------eeCCCCCCCCCeEEEEEeeCCcEEE
Q 024868           84 NGGCKLFEVYGGATDINLLA-----------------------------------KKMPPLQDAGPQKCLSFSVDGSRFA  128 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~  128 (261)
                      |.+++.||.++++...+...                                   ...+.+..+-+++++.|..++..+.
T Consensus       111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence            99999999998875221100                                   1112333456788999999999999


Q ss_pred             EeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC----CcEEEEEeecCC---CceE
Q 024868          129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED----GVAWTFLTRNSD---EKIE  201 (261)
Q Consensus       129 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~---~~v~  201 (261)
                      +|+-|+.|++||++..+....+.+|...|+.+..+|+|.++.+-+.|.++++||++-    .+++..+.++..   ....
T Consensus       191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL  270 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL  270 (338)
T ss_pred             eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence            999999999999999888888888999999999999999999999999999999984    345666665431   1245


Q ss_pred             EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .++|+|+++.     +.+++.|..+++||......+..+.+|.+.|.+++|+|...+|.
T Consensus       271 ~cswsp~~~~-----i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil  324 (338)
T KOG0265|consen  271 KCSWSPNGTK-----ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL  324 (338)
T ss_pred             eeeccCCCCc-----cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEE
Confidence            6889999998     68899999999999998888888999999999999999887764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.4e-31  Score=192.75  Aligned_cols=226  Identities=13%  Similarity=0.101  Sum_probs=201.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      -+.|.|+++.|.   +..+++|+.|+        .+.+||..++++      ...+.+|...|..+++|+-..++++++.
T Consensus       151 lgWVr~vavdP~---n~wf~tgs~Dr--------tikIwDlatg~L------kltltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  151 LGWVRSVAVDPG---NEWFATGSADR--------TIKIWDLATGQL------KLTLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             cceEEEEeeCCC---ceeEEecCCCc--------eeEEEEcccCeE------EEeecchhheeeeeeecccCceEEEecC
Confidence            478999999884   67899999999        999999999988      7789999999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |+.|+-||++..+..       .....|-..|++++..|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.
T Consensus       214 dk~VKCwDLe~nkvI-------R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~  286 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVI-------RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ  286 (460)
T ss_pred             CCeeEEEechhhhhH-------HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence            999999999987751       2234456899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  243 (261)
                      |-...+++++.|++|++||++.|+...++..|.. .+++++.+|....     +++++.| .|+-|++..|+.+..+.+|
T Consensus       287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~-----fASas~d-nik~w~~p~g~f~~nlsgh  359 (460)
T KOG0285|consen  287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENL-----FASASPD-NIKQWKLPEGEFLQNLSGH  359 (460)
T ss_pred             cCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhh-----hhccCCc-cceeccCCccchhhccccc
Confidence            9888899999999999999999999888887766 5999999998876     4666666 5999999999998888899


Q ss_pred             CcCeeEEEEeeCCCEEe
Q 024868          244 RKPASVLSISLDGKYLA  260 (261)
Q Consensus       244 ~~~v~~~~~s~dg~~la  260 (261)
                      ..-+.+++...||-+++
T Consensus       360 ~~iintl~~nsD~v~~~  376 (460)
T KOG0285|consen  360 NAIINTLSVNSDGVLVS  376 (460)
T ss_pred             cceeeeeeeccCceEEE
Confidence            99999999999987664

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.8e-30  Score=204.92  Aligned_cols=229  Identities=21%  Similarity=0.263  Sum_probs=198.5

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      +..|+|++|++.   .+++|+|=..|        ....|....-.+      .+.+.-...+|..++|+..|++|+.|+.
T Consensus       265 ~~kvtaa~fH~~---t~~lvvgFssG--------~f~LyelP~f~l------ih~LSis~~~I~t~~~N~tGDWiA~g~~  327 (893)
T KOG0291|consen  265 SSKVTAAAFHKG---TNLLVVGFSSG--------EFGLYELPDFNL------IHSLSISDQKILTVSFNSTGDWIAFGCS  327 (893)
T ss_pred             ccceeeeeccCC---ceEEEEEecCC--------eeEEEecCCceE------EEEeecccceeeEEEecccCCEEEEcCC
Confidence            468999999994   78999998888        666777666554      5556555678999999999999999877


Q ss_pred             C-CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           84 N-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        84 d-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      . |.+-||+..+..-       ..+...|...+.+++++|||+++++|+.||.|++||..++-+...+..|...|+.+.|
T Consensus       328 klgQLlVweWqsEsY-------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f  400 (893)
T KOG0291|consen  328 KLGQLLVWEWQSESY-------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF  400 (893)
T ss_pred             ccceEEEEEeeccce-------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE
Confidence            6 8999999987653       1333456688999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc-EEEEEECCCCeEEeeee
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-LLAVYDISTWNKIGHKR  241 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~~~  241 (261)
                      +..|+.+++.+.||+|+.||+...+..+++..+......+++..|.|..     +.+|+.|. .|++|++++|+.+..+.
T Consensus       401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel-----V~AG~~d~F~IfvWS~qTGqllDiLs  475 (893)
T KOG0291|consen  401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL-----VCAGAQDSFEIFVWSVQTGQLLDILS  475 (893)
T ss_pred             EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE-----EEeeccceEEEEEEEeecCeeeehhc
Confidence            9999999999999999999999999999998777666788999999997     45555554 79999999999999999


Q ss_pred             ccCcCeeEEEEeeCCCEEeC
Q 024868          242 LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       242 ~~~~~v~~~~~s~dg~~la~  261 (261)
                      +|+++|.+++|+|+|..||+
T Consensus       476 GHEgPVs~l~f~~~~~~LaS  495 (893)
T KOG0291|consen  476 GHEGPVSGLSFSPDGSLLAS  495 (893)
T ss_pred             CCCCcceeeEEccccCeEEe
Confidence            99999999999999999874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.4e-31  Score=189.41  Aligned_cols=192  Identities=19%  Similarity=0.250  Sum_probs=168.3

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  135 (261)
                      ...+.+|.+.|+.+.|+|+|..|++|+.|..|.+|+......-      ....-.|.++|..+.|.+|++.|++++.|.+
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN------~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN------FWVLKGHSGAVMELHGMRDGSHILSCGTDKT  113 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc------eeeeccccceeEeeeeccCCCEEEEecCCce
Confidence            4578899999999999999999999999999999998654421      1222257899999999999999999999999


Q ss_pred             EEEEEccCceEEeeccccCCceeEEEEcCCC-CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE
Q 024868          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  214 (261)
                      ++.||+++++.+.+...|..-+..+.-+.-| .++.+++.|+++++||+++.++++++....  .++++.|..++..   
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky--qltAv~f~d~s~q---  188 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY--QLTAVGFKDTSDQ---  188 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce--eEEEEEecccccc---
Confidence            9999999999999988888888888754434 467788999999999999999998886433  5999999999998   


Q ss_pred             EEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                        +.+++-|+.|++||++.++....+.+|..+|+.+..+|+|.++.
T Consensus       189 --v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll  232 (338)
T KOG0265|consen  189 --VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL  232 (338)
T ss_pred             --eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccc
Confidence              79999999999999999999999999999999999999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=4.9e-31  Score=208.55  Aligned_cols=236  Identities=16%  Similarity=0.226  Sum_probs=194.4

Q ss_pred             ceeeEEE-EEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC-CeEEEEe
Q 024868            5 GTVTCGS-WIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCST   82 (261)
Q Consensus         5 ~~v~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~   82 (261)
                      ..|.+++ |..    +.++++|+.|...      .+|.++.+....    .......+|+..|.+++++..+ .+|++++
T Consensus       366 e~vlSL~~~~~----g~llat~sKD~sv------ilWr~~~~~~~~----~~~a~~~gH~~svgava~~~~~asffvsvS  431 (775)
T KOG0319|consen  366 EAVLSLDVWSS----GDLLATGSKDKSV------ILWRLNNNCSKS----LCVAQANGHTNSVGAVAGSKLGASFFVSVS  431 (775)
T ss_pred             hheeeeeeccc----CcEEEEecCCceE------EEEEecCCcchh----hhhhhhcccccccceeeecccCccEEEEec
Confidence            3456666 332    4689999888833      566663333322    2234567899999999998754 5789999


Q ss_pred             cCCcEEEEEEeCCccccc--eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868           83 TNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~  160 (261)
                      .|+++++|++...+....  .+........|...|++++.+|+.++|++|+.|.+.++|++++......+.+|...+.++
T Consensus       432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V  511 (775)
T KOG0319|consen  432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV  511 (775)
T ss_pred             CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE
Confidence            999999999987332111  111112334567899999999999999999999999999999888888888888899999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      .|+|..+.++++|.|++|+||.+.+..+++++.+|... |..+.|-.+|++     +++++.||.+++|++++++++.++
T Consensus       512 ~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a-Vlra~F~~~~~q-----liS~~adGliKlWnikt~eC~~tl  585 (775)
T KOG0319|consen  512 SFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA-VLRASFIRNGKQ-----LISAGADGLIKLWNIKTNECEMTL  585 (775)
T ss_pred             EeccccceeEeccCCceEEEEEeccceeeeeecCccce-eEeeeeeeCCcE-----EEeccCCCcEEEEeccchhhhhhh
Confidence            99999999999999999999999999999999998874 999999999999     799999999999999999999999


Q ss_pred             eccCcCeeEEEEeeCCCEEe
Q 024868          241 RLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       241 ~~~~~~v~~~~~s~dg~~la  260 (261)
                      ..|...|++++.+|++.+++
T Consensus       586 D~H~DrvWaL~~~~~~~~~~  605 (775)
T KOG0319|consen  586 DAHNDRVWALSVSPLLDMFV  605 (775)
T ss_pred             hhccceeEEEeecCccceeE
Confidence            99999999999999888665

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=1.1e-30  Score=207.19  Aligned_cols=234  Identities=20%  Similarity=0.314  Sum_probs=202.7

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      +-+.|..|.|   +.+++++|...|        ++..||.....+      ....+.|.+.+.+++.+||++.+++++.|
T Consensus       413 ~y~l~~~Fvp---gd~~Iv~G~k~G--------el~vfdlaS~~l------~Eti~AHdgaIWsi~~~pD~~g~vT~saD  475 (888)
T KOG0306|consen  413 GYILASKFVP---GDRYIVLGTKNG--------ELQVFDLASASL------VETIRAHDGAIWSISLSPDNKGFVTGSAD  475 (888)
T ss_pred             ccEEEEEecC---CCceEEEeccCC--------ceEEEEeehhhh------hhhhhccccceeeeeecCCCCceEEecCC
Confidence            3566778888   478999999999        888899877665      45677999999999999999999999999


Q ss_pred             CcEEEEEEeCCcc----ccc-eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868           85 GGCKLFEVYGGAT----DIN-LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (261)
Q Consensus        85 g~i~i~~~~~~~~----~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  159 (261)
                      .+|++||..-...    ..+ +-..+...+.-...|.++.+||||++++++--|.++++|-+++.+-...+.+|.-||.+
T Consensus       476 ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s  555 (888)
T KOG0306|consen  476 KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS  555 (888)
T ss_pred             cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE
Confidence            9999999853221    011 11122334444678999999999999999999999999999999998899999999999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      +..|||++.+++|+.|..|+||-++-|.|-+.+..|.++ |.++.|.|....     .++++.|+.++-||-.+.+.+..
T Consensus       556 mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS-vm~V~F~P~~~~-----FFt~gKD~kvKqWDg~kFe~iq~  629 (888)
T KOG0306|consen  556 MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS-VMSVQFLPKTHL-----FFTCGKDGKVKQWDGEKFEEIQK  629 (888)
T ss_pred             EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc-eeEEEEccccee-----EEEecCcceEEeechhhhhhhee
Confidence            999999999999999999999999999999999988774 999999997665     58999999999999999999999


Q ss_pred             eeccCcCeeEEEEeeCCCEEeC
Q 024868          240 KRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +..|...|++++.+|+|.++++
T Consensus       630 L~~H~~ev~cLav~~~G~~vvs  651 (888)
T KOG0306|consen  630 LDGHHSEVWCLAVSPNGSFVVS  651 (888)
T ss_pred             eccchheeeeeEEcCCCCeEEe
Confidence            9999999999999999999874

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=1.9e-29  Score=202.82  Aligned_cols=202  Identities=14%  Similarity=0.178  Sum_probs=156.7

Q ss_pred             eecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCe
Q 024868           58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH  135 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~  135 (261)
                      .+.+|.+.|.+++|+| ++++|++++.|++|++||+..................|...|.+++|+|++ .+|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4778999999999999 889999999999999999976532111000111223466889999999975 68999999999


Q ss_pred             EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      |++||+.+++....+..|...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|.......+.|.+++..+ +.
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i-vt  228 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI-IT  228 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE-EE
Confidence            99999999888777777888999999999999999999999999999999999888887765545678899988762 21


Q ss_pred             EEEeeCCCcEEEEEECCCCeE-Eeeeecc-CcCeeEEEEeeCCCEEe
Q 024868          216 CTVQRGDKALLAVYDISTWNK-IGHKRLL-RKPASVLSISLDGKYLA  260 (261)
Q Consensus       216 ~~~~~~~d~~i~~~d~~~~~~-~~~~~~~-~~~v~~~~~s~dg~~la  260 (261)
                      +..+.+.|+.|++||+++... +.....+ ...+..+.|++|+++|+
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~  275 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLY  275 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEE
Confidence            112235689999999987653 3222222 24556677899998876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=4.6e-31  Score=193.11  Aligned_cols=192  Identities=13%  Similarity=0.205  Sum_probs=175.5

Q ss_pred             EEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEeccC
Q 024868           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVD  133 (261)
Q Consensus        55 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d  133 (261)
                      ....+.+|.+.|.++++.|-..+|++|+.|++++|||+.+++.        ...+. |...|..+++|+--.|+++++.|
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--------kltltGhi~~vr~vavS~rHpYlFs~ged  214 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--------KLTLTGHIETVRGVAVSKRHPYLFSAGED  214 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--------EEeecchhheeeeeeecccCceEEEecCC
Confidence            3457889999999999999999999999999999999999985        22333 56789999999999999999999


Q ss_pred             CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  213 (261)
                      +.|+-||+...+.++.+.+|-+.|++++.+|.-..|++++.|..+++||+++...+..+.+|.. +|.++.+.|-+.+  
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpq--  291 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQ--  291 (460)
T ss_pred             CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCc--
Confidence            9999999999999999999999999999999999999999999999999999999999998877 6999999997777  


Q ss_pred             EEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       214 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                         +++++.|++|++||++.|+....+..|...+.+++.+|....+|
T Consensus       292 ---vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fA  335 (460)
T KOG0285|consen  292 ---VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFA  335 (460)
T ss_pred             ---eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhh
Confidence               79999999999999999999988999999999999999877665

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=1.9e-29  Score=192.40  Aligned_cols=228  Identities=21%  Similarity=0.259  Sum_probs=189.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..++.++.|.|+   ...+++++.++        .+..|+..+...      ...+..|...+.++.|+|+++++++++.
T Consensus        51 ~~~i~~~~~~~~---~~~l~~~~~~~--------~i~i~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~  113 (289)
T cd00200          51 TGPVRDVAASAD---GTYLASGSSDK--------TIRLWDLETGEC------VRTLTGHTSYVSSVAFSPDGRILSSSSR  113 (289)
T ss_pred             CcceeEEEECCC---CCEEEEEcCCC--------eEEEEEcCcccc------eEEEeccCCcEEEEEEcCCCCEEEEecC
Confidence            456778899885   45788888888        888888876543      4456678889999999999888888887


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      ++.+++|++.+.+....       ...+...+.+++|+|+++++++++.++.+++||+++++....+..+...+.++.|+
T Consensus       114 ~~~i~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  186 (289)
T cd00200         114 DKTIKVWDVETGKCLTT-------LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS  186 (289)
T ss_pred             CCeEEEEECCCcEEEEE-------eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEEC
Confidence            99999999986543111       11356789999999999999988779999999998887776666666789999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  243 (261)
                      |+++.+++++.++.+++||+++++.+..+..+.. .+.+++|+|++.+     +++++.++.+++||+.+++....+..+
T Consensus       187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~-----~~~~~~~~~i~i~~~~~~~~~~~~~~~  260 (289)
T cd00200         187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN-GVNSVAFSPDGYL-----LASGSEDGTIRVWDLRTGECVQTLSGH  260 (289)
T ss_pred             CCcCEEEEecCCCcEEEEECCCCceecchhhcCC-ceEEEEEcCCCcE-----EEEEcCCCcEEEEEcCCceeEEEcccc
Confidence            9999999999999999999999888888765554 6999999999776     566777999999999988888778888


Q ss_pred             CcCeeEEEEeeCCCEEeC
Q 024868          244 RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       244 ~~~v~~~~~s~dg~~la~  261 (261)
                      ...+.+++|+|++++|++
T Consensus       261 ~~~i~~~~~~~~~~~l~~  278 (289)
T cd00200         261 TNSVTSLAWSPDGKRLAS  278 (289)
T ss_pred             CCcEEEEEECCCCCEEEE
Confidence            889999999999988864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.98  E-value=2.1e-29  Score=192.62  Aligned_cols=237  Identities=15%  Similarity=0.143  Sum_probs=184.6

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec---CCCCCceEEEECCCCCeEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD---ESEGDPMTIAVNPSGDDFV   79 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~   79 (261)
                      .+--|.|+.|+|+   ...+++.+.|+        +++.||-.+++.      ...+.   +|.+.|.+++|+||+..++
T Consensus       189 HskFV~~VRysPD---G~~Fat~gsDg--------ki~iyDGktge~------vg~l~~~~aHkGsIfalsWsPDs~~~~  251 (603)
T KOG0318|consen  189 HSKFVNCVRYSPD---GSRFATAGSDG--------KIYIYDGKTGEK------VGELEDSDAHKGSIFALSWSPDSTQFL  251 (603)
T ss_pred             cccceeeEEECCC---CCeEEEecCCc--------cEEEEcCCCccE------EEEecCCCCccccEEEEEECCCCceEE
Confidence            3456899999997   67999999999        999999988876      44454   8999999999999999999


Q ss_pred             EEecCCcEEEEEEeCCcccccee------------------------------------eeeCCCCCCCCCeEEEEEeeC
Q 024868           80 CSTTNGGCKLFEVYGGATDINLL------------------------------------AKKMPPLQDAGPQKCLSFSVD  123 (261)
Q Consensus        80 ~~~~dg~i~i~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~v~~~~~s~~  123 (261)
                      +++.|.+++|||+.+.+......                                    ........|...|+++..+||
T Consensus       252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d  331 (603)
T KOG0318|consen  252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD  331 (603)
T ss_pred             EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence            99999999999998775411100                                    001112235678999999999


Q ss_pred             CcEEEEeccCCeEEEEEccCceEE-------------------------------ee-----------------------
Q 024868          124 GSRFAAGGVDGHLRIMHWPSLRII-------------------------------LD-----------------------  149 (261)
Q Consensus       124 ~~~l~~~~~d~~i~~~d~~~~~~~-------------------------------~~-----------------------  149 (261)
                      +++|++|+.||.|.-|+..++..-                               +.                       
T Consensus       332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l  411 (603)
T KOG0318|consen  332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL  411 (603)
T ss_pred             CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence            999999999999999997332110                               00                       


Q ss_pred             -------------------ccccC--------CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEE-EeecCCCceE
Q 024868          150 -------------------EPKAH--------KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIE  201 (261)
Q Consensus       150 -------------------~~~~~--------~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~  201 (261)
                                         +..+.        -...+++++|++..++.|+.|+.|+||.+..++.... ....+.++++
T Consensus       412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT  491 (603)
T KOG0318|consen  412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAIT  491 (603)
T ss_pred             EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCce
Confidence                               00000        1235788999999999999999999999987654332 2223445799


Q ss_pred             EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE-eeeeccCcCeeEEEEeeCCCEEeC
Q 024868          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI-GHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+++|||+.+     ++++...+.+.+||+.+.+.. .....|...|.+++|+|+.+++|+
T Consensus       492 ~vaySpd~~y-----la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vAT  547 (603)
T KOG0318|consen  492 DVAYSPDGAY-----LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVAT  547 (603)
T ss_pred             EEEECCCCcE-----EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEe
Confidence            9999999999     789999999999999988763 234568899999999999999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.6e-30  Score=190.37  Aligned_cols=226  Identities=15%  Similarity=0.145  Sum_probs=191.0

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      |..++|...   ..++++++.|-        .+..||.++..     .....+.+|...|.++.|-|.|.++++++.|.+
T Consensus       153 v~di~~~a~---Gk~l~tcSsDl--------~~~LWd~~~~~-----~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t  216 (406)
T KOG0295|consen  153 VFDISFDAS---GKYLATCSSDL--------SAKLWDFDTFF-----RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT  216 (406)
T ss_pred             eeEEEEecC---ccEEEecCCcc--------chhheeHHHHH-----HHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence            777777664   56888888777        45555554421     113456789999999999999999999999999


Q ss_pred             EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC-
Q 024868           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD-  165 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-  165 (261)
                      |+.|++.++-+...       ...|...|..++.+.||..+++++.|.++++|-+.+++....+..|.-+|.+++|-|. 
T Consensus       217 ik~We~~tg~cv~t-------~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~  289 (406)
T KOG0295|consen  217 IKAWECDTGYCVKT-------FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPES  289 (406)
T ss_pred             eeEEecccceeEEe-------ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccc
Confidence            99999999876222       2234568999999999999999999999999999999776677777778999999763 


Q ss_pred             --------------CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          166 --------------SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       166 --------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                                    ++++.+++.|++|++||+.++.++.++.+|.+ .|+.++|+|.|+|     ++++.+|+++++||+
T Consensus       290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gky-----i~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKY-----ILSCADDKTLRVWDL  363 (406)
T ss_pred             cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeE-----EEEEecCCcEEEEEe
Confidence                          25899999999999999999999999998876 6999999999999     799999999999999


Q ss_pred             CCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          232 STWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +++++++.+..|+..+.++.|+.+..|+++
T Consensus       364 ~~~~cmk~~~ah~hfvt~lDfh~~~p~VvT  393 (406)
T KOG0295|consen  364 KNLQCMKTLEAHEHFVTSLDFHKTAPYVVT  393 (406)
T ss_pred             ccceeeeccCCCcceeEEEecCCCCceEEe
Confidence            999999999999999999999988877653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.2e-31  Score=203.89  Aligned_cols=227  Identities=15%  Similarity=0.163  Sum_probs=194.7

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      -||..++|..+   .+.+++|+.|.        +|.+|+.++...      ...+..|.+-|.+++.+|...+++++++|
T Consensus        56 ~PvRa~kfiaR---knWiv~GsDD~--------~IrVfnynt~ek------V~~FeAH~DyIR~iavHPt~P~vLtsSDD  118 (794)
T KOG0276|consen   56 VPVRAAKFIAR---KNWIVTGSDDM--------QIRVFNYNTGEK------VKTFEAHSDYIRSIAVHPTLPYVLTSSDD  118 (794)
T ss_pred             cchhhheeeec---cceEEEecCCc--------eEEEEeccccee------eEEeeccccceeeeeecCCCCeEEecCCc
Confidence            57888888874   78999999999        777777777654      66899999999999999999999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      -+|++||.+..-...      +..-.|...|.+++|+| |.+.+++++-|++|++|.+.+..+...+.+|...|.++.+-
T Consensus       119 m~iKlW~we~~wa~~------qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy  192 (794)
T KOG0276|consen  119 MTIKLWDWENEWACE------QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYY  192 (794)
T ss_pred             cEEEEeeccCceeee------eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEec
Confidence            999999998764322      22334567899999999 78899999999999999999888888888888999999997


Q ss_pred             CC--CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          164 LD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       164 ~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      +.  ..+|++|++|..++|||.++..|++++.+|.. .|..+.|+|.-..     +++|++||+++||+..+-+...++.
T Consensus       193 ~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpi-----iisgsEDGTvriWhs~Ty~lE~tLn  266 (794)
T KOG0276|consen  193 TGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPI-----IISGSEDGTVRIWNSKTYKLEKTLN  266 (794)
T ss_pred             cCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcE-----EEEecCCccEEEecCcceehhhhhh
Confidence            74  46999999999999999999999999999887 4999999998876     7999999999999999888776666


Q ss_pred             ccCcCeeEEEEeeCCCEEe
Q 024868          242 LLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       242 ~~~~~v~~~~~s~dg~~la  260 (261)
                      .....+++++-.+.++.++
T Consensus       267 ~gleRvW~I~~~k~~~~i~  285 (794)
T KOG0276|consen  267 YGLERVWCIAAHKGDGKIA  285 (794)
T ss_pred             cCCceEEEEeecCCCCeEE
Confidence            6667788887777665554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=3e-29  Score=215.63  Aligned_cols=227  Identities=14%  Similarity=0.148  Sum_probs=182.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~   82 (261)
                      ..+|.+++|++..  ..++++++.++        .+..||..+...      ...+.+|.+.|.+++|+| ++.+|++++
T Consensus       532 ~~~v~~l~~~~~~--~~~las~~~Dg--------~v~lWd~~~~~~------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs  595 (793)
T PLN00181        532 RSKLSGICWNSYI--KSQVASSNFEG--------VVQVWDVARSQL------VTEMKEHEKRVWSIDYSSADPTLLASGS  595 (793)
T ss_pred             cCceeeEEeccCC--CCEEEEEeCCC--------eEEEEECCCCeE------EEEecCCCCCEEEEEEcCCCCCEEEEEc
Confidence            4678899998752  56899999999        888999877654      456788999999999997 788999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCce-EEeeccccCCceeEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDM  160 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~  160 (261)
                      .|++|++||+.++...        ..+.....+.++.|++ ++.+|++|+.|+.|++||+++.+ ....+..|...|.++
T Consensus       596 ~Dg~v~iWd~~~~~~~--------~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v  667 (793)
T PLN00181        596 DDGSVKLWSINQGVSI--------GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYV  667 (793)
T ss_pred             CCCEEEEEECCCCcEE--------EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEE
Confidence            9999999999876541        1222345789999964 79999999999999999998765 344556677789999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccC------CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTED------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      .|. ++.+|++++.|+.|++||++.      .+++..+.+|.. .+..++|+|++++     +++++.|+.|++|+....
T Consensus       668 ~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~-----lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        668 RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGY-----IATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCE-----EEEEeCCCEEEEEECCCC
Confidence            997 688999999999999999974      356777777655 5899999999997     799999999999998765


Q ss_pred             eEEeee-------------eccCcCeeEEEEeeCCCEEeC
Q 024868          235 NKIGHK-------------RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       235 ~~~~~~-------------~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ..+...             ..+...|.+++|+|+++.|++
T Consensus       741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva  780 (793)
T PLN00181        741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVA  780 (793)
T ss_pred             CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEE
Confidence            433211             123356899999999998863

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=8.1e-29  Score=199.26  Aligned_cols=229  Identities=9%  Similarity=0.091  Sum_probs=171.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec-CCeEEeeecCCCCCceEEEECCCC-CeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT-SPLVTYVFDESEGDPMTIAVNPSG-DDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~   81 (261)
                      .++|++++|+|.  +.+++++|+.|+        .|..||........ .......+.+|...|.+++|+|++ +.|+++
T Consensus        75 ~~~V~~v~fsP~--d~~~LaSgS~Dg--------tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg  144 (493)
T PTZ00421         75 EGPIIDVAFNPF--DPQKLFTASEDG--------TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA  144 (493)
T ss_pred             CCCEEEEEEcCC--CCCEEEEEeCCC--------EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence            578999999983  245899999999        88888875543211 112244678999999999999975 689999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCc-eeEE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDM  160 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~  160 (261)
                      +.|++|++||+.++....       ....|...|.+++|+|+|++|++++.|+.|++||+++++.+.....|.+. ...+
T Consensus       145 s~DgtVrIWDl~tg~~~~-------~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~  217 (493)
T PTZ00421        145 GADMVVNVWDVERGKAVE-------VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC  217 (493)
T ss_pred             eCCCEEEEEECCCCeEEE-------EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence            999999999998765311       11235678999999999999999999999999999999887776666553 4567


Q ss_pred             EEcCCCCEEEEec----CCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEeeC-CCcEEEEEECCCC
Q 024868          161 DFSLDSEFLATTS----TDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDISTW  234 (261)
Q Consensus       161 ~~s~~~~~l~~~~----~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~-~d~~i~~~d~~~~  234 (261)
                      .|.+++..+++++    .|+.|++||+++.. +......+....+....|+++++.     ++.++ .|+.|++||+.++
T Consensus       218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~-----L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNL-----LYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCE-----EEEEEeCCCeEEEEEeeCC
Confidence            8999887777654    47899999998754 444333333334666789999997     34444 6999999999998


Q ss_pred             eEEeeeec-cCcCeeEEEEee
Q 024868          235 NKIGHKRL-LRKPASVLSISL  254 (261)
Q Consensus       235 ~~~~~~~~-~~~~v~~~~~s~  254 (261)
                      +.+..... ...+...++|.|
T Consensus       293 ~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        293 RLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             ceEEEeeccCCCCCcceEecc
Confidence            87654432 334566777766

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.2e-29  Score=175.96  Aligned_cols=196  Identities=14%  Similarity=0.192  Sum_probs=165.2

Q ss_pred             EeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      ...+++|.+.+..++|+|- |..|++++.|..|++|+...... .  .......-.|+..|++++|+|.|++|++++.|.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~--~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-W--TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-E--EEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            5578899999999999997 88999999999999999985321 1  111122225678999999999999999999999


Q ss_pred             eEEEEEccCc--eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCC---cEEEEEeecCCCceEEEEEecCC
Q 024868          135 HLRIMHWPSL--RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDG  209 (261)
Q Consensus       135 ~i~~~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~p~~  209 (261)
                      ++.||.-..+  +.+..+.+|...|.+++|+++|++||+++.|++|.||....+   ++...++.|.. .|..+.|+|..
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~  162 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTE  162 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCc
Confidence            9999975543  456677788889999999999999999999999999998743   56778888776 49999999988


Q ss_pred             CcceEEEEEeeCCCcEEEEEECC---CCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          210 TKPFLFCTVQRGDKALLAVYDIS---TWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ..     +++++.|++|++|+-.   ..++..++..|...|.+++|++.|..|+
T Consensus       163 dl-----L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~  211 (312)
T KOG0645|consen  163 DL-----LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV  211 (312)
T ss_pred             ce-----eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence            87     7999999999999876   4567788889999999999999997765

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=2.8e-31  Score=200.74  Aligned_cols=223  Identities=17%  Similarity=0.248  Sum_probs=186.5

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCC-CceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      -|.++.|.|.  ...++++++.|+        .|+.|+.-. ..+      ...+.+|..+|.+++|+++|..+++++.|
T Consensus       216 gvsai~~fp~--~~hLlLS~gmD~--------~vklW~vy~~~~~------lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  216 GVSAIQWFPK--KGHLLLSGGMDG--------LVKLWNVYDDRRC------LRTFKGHRKPVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             ccchhhhccc--eeeEEEecCCCc--------eEEEEEEecCcce------ehhhhcchhhhhhhhccccCCeeeeeecc
Confidence            4788889985  378999999999        777777654 333      66789999999999999999999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      +.+++||.+++++        ...+.....++++.|.||+ +.+++|+.|+.|+.||+++++.++....|-+.|..+.|-
T Consensus       280 ~~lKlwDtETG~~--------~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~  351 (503)
T KOG0282|consen  280 RFLKLWDTETGQV--------LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV  351 (503)
T ss_pred             eeeeeeccccceE--------EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence            9999999999987        3334445678999999988 889999999999999999999888777778899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEE--------------------------------E--------------eecC-
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTF--------------------------------L--------------TRNS-  196 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------------------------------~--------------~~~~-  196 (261)
                      ++|++++++++|++++||+.+.+-+++.                                +              .+|. 
T Consensus       352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v  431 (503)
T KOG0282|consen  352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV  431 (503)
T ss_pred             cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence            9999999999999999999764322111                                0              1111 


Q ss_pred             CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC
Q 024868          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       197 ~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~  257 (261)
                      .+.-..+.|||||++     +++|..||.+.+||.++-+.+..+..|..++..+.|+|...
T Consensus       432 aGys~~v~fSpDG~~-----l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  432 AGYSCQVDFSPDGRT-----LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP  487 (503)
T ss_pred             cCceeeEEEcCCCCe-----EEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCc
Confidence            112346899999998     79999999999999999999989999999999999999653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.9e-28  Score=172.21  Aligned_cols=222  Identities=13%  Similarity=0.155  Sum_probs=174.5

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCC-CceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .+++..+||+|..  +.++|+++.+.        .|..|+... ..+   ......-.+|+..|.+++|+|.|++|++++
T Consensus        14 ~~r~W~~awhp~~--g~ilAscg~Dk--------~vriw~~~~~~s~---~ck~vld~~hkrsVRsvAwsp~g~~La~aS   80 (312)
T KOG0645|consen   14 KDRVWSVAWHPGK--GVILASCGTDK--------AVRIWSTSSGDSW---TCKTVLDDGHKRSVRSVAWSPHGRYLASAS   80 (312)
T ss_pred             CCcEEEEEeccCC--ceEEEeecCCc--------eEEEEecCCCCcE---EEEEeccccchheeeeeeecCCCcEEEEee
Confidence            4679999999952  56899999999        777777763 222   111223357999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce---EEeeccccCCceeE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKSVLD  159 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~v~~  159 (261)
                      .|.++.||.-..+....     ....-.|...|.+++||++|++||+++.|..|.+|.+..+.   ....+..|...|..
T Consensus        81 FD~t~~Iw~k~~~efec-----v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~  155 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFEC-----VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH  155 (312)
T ss_pred             ccceEEEeecCCCceeE-----EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence            99999999887654211     12223456899999999999999999999999999987443   44456677778999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEcc---CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTE---DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      +.|+|...+|++++.|++|++|+-.   ..++.+++.+|.. .|.+++|+|.|..     ++++++|++++||...+.- 
T Consensus       156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~r-----l~s~sdD~tv~Iw~~~~~~-  228 (312)
T KOG0645|consen  156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSR-----LVSCSDDGTVSIWRLYTDL-  228 (312)
T ss_pred             EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCce-----EEEecCCcceEeeeeccCc-
Confidence            9999999999999999999999876   3467888988877 5999999999987     7999999999999965321 


Q ss_pred             EeeeeccCcCeeEEEEe
Q 024868          237 IGHKRLLRKPASVLSIS  253 (261)
Q Consensus       237 ~~~~~~~~~~v~~~~~s  253 (261)
                         -..|...++.+.|.
T Consensus       229 ---~~~~sr~~Y~v~W~  242 (312)
T KOG0645|consen  229 ---SGMHSRALYDVPWD  242 (312)
T ss_pred             ---chhcccceEeeeec
Confidence               11234556666665

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.5e-29  Score=175.99  Aligned_cols=227  Identities=14%  Similarity=0.265  Sum_probs=180.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~   82 (261)
                      ..+|.+++|+-+   +..+++|+.+.        .+..|+.+...+    .......+|.+.|-.++|+| ..+.+++++
T Consensus        20 ~~~v~Sv~wn~~---g~~lasgs~dk--------tv~v~n~e~~r~----~~~~~~~gh~~svdql~w~~~~~d~~atas   84 (313)
T KOG1407|consen   20 VQKVHSVAWNCD---GTKLASGSFDK--------TVSVWNLERDRF----RKELVYRGHTDSVDQLCWDPKHPDLFATAS   84 (313)
T ss_pred             hhcceEEEEccc---CceeeecccCC--------ceEEEEecchhh----hhhhcccCCCcchhhheeCCCCCcceEEec
Confidence            578999999986   66899999888        455555444333    22456789999999999988 567889999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc------------------
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL------------------  144 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~------------------  144 (261)
                      .|.+|++||++..++....        ...+.-.-+.|+|+|.++++++.|..|.+.|.++.                  
T Consensus        85 ~dk~ir~wd~r~~k~~~~i--------~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~  156 (313)
T KOG1407|consen   85 GDKTIRIWDIRSGKCTARI--------ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN  156 (313)
T ss_pred             CCceEEEEEeccCcEEEEe--------eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeec
Confidence            9999999999988763222        22233345788888888888888777777776432                  


Q ss_pred             -----------------------eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceE
Q 024868          145 -----------------------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE  201 (261)
Q Consensus       145 -----------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  201 (261)
                                             +++..+..|.....++.|+|+|+++|+|+.|..+.+||++.--+.+.+... +-||+
T Consensus       157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-dwpVR  235 (313)
T KOG1407|consen  157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-DWPVR  235 (313)
T ss_pred             CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc-cCceE
Confidence                                   223334456667889999999999999999999999999988888888765 44899


Q ss_pred             EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .+.||.||++     ++++++|..|-|=++++|..+..++ +.++...++|+|...+||
T Consensus       236 TlSFS~dg~~-----lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLA  288 (313)
T KOG1407|consen  236 TLSFSHDGRM-----LASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLA  288 (313)
T ss_pred             EEEeccCcce-----eeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceee
Confidence            9999999999     7999999999999999999986655 668889999999988887

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.1e-29  Score=195.83  Aligned_cols=228  Identities=16%  Similarity=0.173  Sum_probs=194.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC-CCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...|+++.|+++   ...|++|..+|        .+..||..+.+.      ...+.+ |...|.+++|+  +..+.+|+
T Consensus       217 ~~~vtSv~ws~~---G~~LavG~~~g--------~v~iwD~~~~k~------~~~~~~~h~~rvg~laW~--~~~lssGs  277 (484)
T KOG0305|consen  217 EELVTSVKWSPD---GSHLAVGTSDG--------TVQIWDVKEQKK------TRTLRGSHASRVGSLAWN--SSVLSSGS  277 (484)
T ss_pred             CCceEEEEECCC---CCEEEEeecCC--------eEEEEehhhccc------cccccCCcCceeEEEecc--CceEEEec
Confidence            578999999996   67999999999        899999876553      345566 89999999998  66789999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .++.|..+|++..+....      ....|...|..++|++|++++|+|+.|+.+.|||....+....+..|...|..++|
T Consensus       278 r~~~I~~~dvR~~~~~~~------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw  351 (484)
T KOG0305|consen  278 RDGKILNHDVRISQHVVS------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW  351 (484)
T ss_pred             CCCcEEEEEEecchhhhh------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence            999999999998765222      13346789999999999999999999999999999888888888899999999999


Q ss_pred             cC-CCCEEEEec--CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          163 SL-DSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       163 s~-~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      +| ...+||+|+  .|+.|++||..+++.+..+...  ..|.++.|++..+.+.   ...|..++.|.||+..+.+.+..
T Consensus       352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~---sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELL---STHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             CCCccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEE---EecCCCCCcEEEEeccccceeee
Confidence            99 566888865  5899999999999999888743  4599999999998731   34455677999999999999999


Q ss_pred             eeccCcCeeEEEEeeCCCEEeC
Q 024868          240 KRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +.+|...|..+++||||..+++
T Consensus       427 l~gH~~RVl~la~SPdg~~i~t  448 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPDGETIVT  448 (484)
T ss_pred             ecCCcceeEEEEECCCCCEEEE
Confidence            9999999999999999999874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-29  Score=190.16  Aligned_cols=225  Identities=14%  Similarity=0.196  Sum_probs=183.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC-CeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~   82 (261)
                      +-.|+++.|-.+   +.++++|+..|        .+..||..+...      ...+.+|+.++..+.|+|++ ..+++|+
T Consensus        68 k~~v~s~~fR~D---G~LlaaGD~sG--------~V~vfD~k~r~i------LR~~~ah~apv~~~~f~~~d~t~l~s~s  130 (487)
T KOG0310|consen   68 KDVVYSVDFRSD---GRLLAAGDESG--------HVKVFDMKSRVI------LRQLYAHQAPVHVTKFSPQDNTMLVSGS  130 (487)
T ss_pred             ccceeEEEeecC---CeEEEccCCcC--------cEEEeccccHHH------HHHHhhccCceeEEEecccCCeEEEecC
Confidence            346888889875   67999999999        889999554333      44688999999999999955 5567888


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      +|+.+++||+.+...       ......|...|.+.+|+| ++..+++|+.||.|++||++..........|..+|..+.
T Consensus       131 Dd~v~k~~d~s~a~v-------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl  203 (487)
T KOG0310|consen  131 DDKVVKYWDLSTAYV-------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVL  203 (487)
T ss_pred             CCceEEEEEcCCcEE-------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEE
Confidence            889999999988762       133456789999999999 466899999999999999998744445567778999999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      +-|.|..+++++. +.+++||+.+|.... .+..|+. .|+|+++..++..     +++++-|+.+++||+.+.+.+..+
T Consensus       204 ~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s~~~r-----LlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  204 ALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLASDSTR-----LLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             EcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEeecCCce-----EeecccccceEEEEccceEEEEee
Confidence            9999999999874 689999999665444 4444555 5999999999988     799999999999999888877655


Q ss_pred             eccCcCeeEEEEeeCCCEEe
Q 024868          241 RLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       241 ~~~~~~v~~~~~s~dg~~la  260 (261)
                      . ..++|.+++.+||++.++
T Consensus       277 ~-~~~pvLsiavs~dd~t~v  295 (487)
T KOG0310|consen  277 K-YPGPVLSIAVSPDDQTVV  295 (487)
T ss_pred             e-cccceeeEEecCCCceEE
Confidence            4 568999999999998776

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.4e-28  Score=188.15  Aligned_cols=230  Identities=18%  Similarity=0.217  Sum_probs=189.7

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-eEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~   81 (261)
                      .+|||..++|.++  ..+++|+|.+.+     +..+++.||..+..-        .+.+|...|.+++|-|... +++++
T Consensus       102 ~aG~I~Di~Wd~d--s~RI~avGEGre-----rfg~~F~~DSG~SvG--------ei~GhSr~ins~~~KpsRPfRi~T~  166 (603)
T KOG0318|consen  102 LAGPIKDISWDFD--SKRIAAVGEGRE-----RFGHVFLWDSGNSVG--------EITGHSRRINSVDFKPSRPFRIATG  166 (603)
T ss_pred             cccccccceeCCC--CcEEEEEecCcc-----ceeEEEEecCCCccc--------eeeccceeEeeeeccCCCceEEEec
Confidence            3689999999886  478888887655     234788888766432        5889999999999999766 58999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc---ccCCcee
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP---KAHKSVL  158 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~  158 (261)
                      ++|+.+.+|+-...+.       ....-.|..-|+++.|+|||+++++++.||++.+||-.+++.+..+.   .|.+.|+
T Consensus       167 sdDn~v~ffeGPPFKF-------k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf  239 (603)
T KOG0318|consen  167 SDDNTVAFFEGPPFKF-------KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF  239 (603)
T ss_pred             cCCCeEEEeeCCCeee-------eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence            9999999998654432       12333466789999999999999999999999999999999877766   6778999


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC--CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      +++|+||++.+++++.|.+++|||+.+.++++++.....  ..-..+.|-  +..     +++.+-+|+|.+++...++.
T Consensus       240 alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~-----lItVSl~G~in~ln~~d~~~  312 (603)
T KOG0318|consen  240 ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDH-----LITVSLSGTINYLNPSDPSV  312 (603)
T ss_pred             EEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCe-----EEEEEcCcEEEEecccCCCh
Confidence            999999999999999999999999999999998875432  122334464  333     57888899999999999998


Q ss_pred             EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          237 IGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +..+.+|...|+++..+||+++|.+
T Consensus       313 ~~~i~GHnK~ITaLtv~~d~~~i~S  337 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVSPDGKTIYS  337 (603)
T ss_pred             hheecccccceeEEEEcCCCCEEEe
Confidence            8899999999999999999998863

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.9e-28  Score=170.06  Aligned_cols=225  Identities=16%  Similarity=0.214  Sum_probs=165.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .+++|..+.|+.+   .++.+++|.+.        .+..|++..+.+      .....+|...|..++.+.|...+++++
T Consensus        16 ~qgaV~avryN~d---GnY~ltcGsdr--------tvrLWNp~rg~l------iktYsghG~EVlD~~~s~Dnskf~s~G   78 (307)
T KOG0316|consen   16 AQGAVRAVRYNVD---GNYCLTCGSDR--------TVRLWNPLRGAL------IKTYSGHGHEVLDAALSSDNSKFASCG   78 (307)
T ss_pred             cccceEEEEEccC---CCEEEEcCCCc--------eEEeecccccce------eeeecCCCceeeeccccccccccccCC
Confidence            4789999999986   77999999999        999999998887      778899999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc--eEEeeccccCCceeEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLDM  160 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~~  160 (261)
                      .|..+.+||+.+++..       ...-.|...|+.++|+.+...+++|+.|.++++||.++.  ++++.+......|.++
T Consensus        79 gDk~v~vwDV~TGkv~-------Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si  151 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVD-------RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI  151 (307)
T ss_pred             CCceEEEEEcccCeee-------eecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence            9999999999999862       223345689999999999999999999999999998754  3333333333444444


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEE------------------------
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC------------------------  216 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~------------------------  216 (261)
                      ..+  +..|++|+.||+++.||++.|+...-..   +.||++++|++|++..++-+                        
T Consensus       152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn  226 (307)
T KOG0316|consen  152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN  226 (307)
T ss_pred             Eec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence            443  3345555555555555555544332222   22455555555544311110                        


Q ss_pred             ---------------EEeeCCCcEEEEEECCCCeEEeeeeccCcC-eeEEEEeeCC
Q 024868          217 ---------------TVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDG  256 (261)
Q Consensus       217 ---------------~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~dg  256 (261)
                                     ++++++||.+++||+.....+..+..+... +.+++++|.-
T Consensus       227 ~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~  282 (307)
T KOG0316|consen  227 MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM  282 (307)
T ss_pred             ceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence                           467999999999999988887777766665 7888888854

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.2e-29  Score=181.40  Aligned_cols=221  Identities=14%  Similarity=0.254  Sum_probs=180.1

Q ss_pred             CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCC------------ceecCCeEEeeecCCCCCceEE
Q 024868            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT------------SVYTSPLVTYVFDESEGDPMTI   69 (261)
Q Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~   69 (261)
                      +.++|+.+.+|+|+   +.++++|+.|.        .|..+|.+..            ......-....+-.|.+.|+++
T Consensus       110 ~HK~~cR~aafs~D---G~lvATGsaD~--------SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l  178 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPD---GSLVATGSADA--------SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL  178 (430)
T ss_pred             ecccceeeeeeCCC---CcEEEccCCcc--------eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence            45789999999996   67999999988        6666665410            0001111234677899999999


Q ss_pred             EECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee
Q 024868           70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD  149 (261)
Q Consensus        70 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~  149 (261)
                      .|+|....|++++.|++|++||+.....     .+..+.+....+|.++.|+|.|.+|++|....++++||+++-++...
T Consensus       179 ~FHPre~ILiS~srD~tvKlFDfsK~sa-----KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTVKLFDFSKTSA-----KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             eecchhheEEeccCCCeEEEEecccHHH-----HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence            9999999999999999999999976542     11244555668999999999999999999999999999999877543


Q ss_pred             cc---ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee-cCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868          150 EP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (261)
Q Consensus       150 ~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~  225 (261)
                      -.   .|.+.|.++.+++.|++.++++.||.|++||--+++++.++.. |.+..|.+..|..+|++     +++++.|..
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-----iLsSG~DS~  328 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-----ILSSGKDST  328 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-----EeecCCcce
Confidence            32   3456899999999999999999999999999999999988864 44567999999999999     789999999


Q ss_pred             EEEEECCCCeEEeeeecc
Q 024868          226 LAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       226 i~~~d~~~~~~~~~~~~~  243 (261)
                      +++|.+.+++.+....+.
T Consensus       329 vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  329 VKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             eeeeeecCCceEEEEecC
Confidence            999999999988766654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-29  Score=177.84  Aligned_cols=229  Identities=18%  Similarity=0.141  Sum_probs=180.6

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEec
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTT   83 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~   83 (261)
                      --++.++|++..  .+.++++.+||        .+..||.....     .+.+.+++|...|.++.|++ ++..+++++-
T Consensus        61 D~LfdV~Wse~~--e~~~~~a~GDG--------SLrl~d~~~~s-----~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW  125 (311)
T KOG0277|consen   61 DGLFDVAWSENH--ENQVIAASGDG--------SLRLFDLTMPS-----KPIHKFKEHKREVYSVDWNTVRRRIFLTSSW  125 (311)
T ss_pred             cceeEeeecCCC--cceEEEEecCc--------eEEEeccCCCC-----cchhHHHhhhhheEEeccccccceeEEeecc
Confidence            346789999875  56777777888        77778843322     23557899999999999998 5667788899


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      |++|++|+...+...       .....|...|+..+|+| ...++++++.|+++++||++.......+..|..++.++.|
T Consensus       126 D~TiKLW~~~r~~Sv-------~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw  198 (311)
T KOG0277|consen  126 DGTIKLWDPNRPNSV-------QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDW  198 (311)
T ss_pred             CCceEeecCCCCcce-------EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecc
Confidence            999999998766541       11233567899999999 6789999999999999999876555557777779999999


Q ss_pred             cC-CCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEee
Q 024868          163 SL-DSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGH  239 (261)
Q Consensus       163 s~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~  239 (261)
                      +. +.+.+++++.|+.|++||+++- .++.++.+|.- .|+.+.|||...-+    +++++.|-++++||...+. .+.+
T Consensus       199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~-AVRkvk~Sph~~~l----LaSasYDmT~riw~~~~~ds~~e~  273 (311)
T KOG0277|consen  199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL-AVRKVKFSPHHASL----LASASYDMTVRIWDPERQDSAIET  273 (311)
T ss_pred             cccCCcEEEecCCCceEEEEehhhccccceeecCCce-EEEEEecCcchhhH----hhhccccceEEecccccchhhhhh
Confidence            88 6778999999999999999974 56777876654 69999999987764    6899999999999998554 4445


Q ss_pred             eeccCcCeeEEEEeeC-CCEEe
Q 024868          240 KRLLRKPASVLSISLD-GKYLA  260 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~d-g~~la  260 (261)
                      ...|...+..+.||+- ..++|
T Consensus       274 ~~~HtEFv~g~Dws~~~~~~vA  295 (311)
T KOG0277|consen  274 VDHHTEFVCGLDWSLFDPGQVA  295 (311)
T ss_pred             hhccceEEeccccccccCceee
Confidence            5677788888888874 33444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.6e-29  Score=201.55  Aligned_cols=236  Identities=13%  Similarity=0.171  Sum_probs=184.4

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcC------C-----------------------C-C---c-
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP------K-----------------------T-T---S-   48 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------~-----------------------~-~---~-   48 (261)
                      ..|.|.++.|+++   +.++|+||.|+-.      +||..-.      .                       . .   . 
T Consensus       266 h~gaIw~mKFS~D---GKyLAsaGeD~vi------rVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  266 HKGAIWAMKFSHD---GKYLASAGEDGVI------RVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             cCCcEEEEEeCCC---CceeeecCCCceE------EEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            4689999999996   7899999999922      4444322      0                       0 0   0 


Q ss_pred             ------------------eecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC
Q 024868           49 ------------------VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (261)
Q Consensus        49 ------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  110 (261)
                                        ....+.+.+.+.+|.+.|.++.|+.++ +|++++.|.+|++|++....+        +..+.
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~C--------L~~F~  407 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKEC--------LKVFS  407 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcce--------eeEEe
Confidence                              000113345778999999999999765 788999999999999998887        77888


Q ss_pred             CCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE
Q 024868          111 DAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (261)
Q Consensus       111 ~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~  189 (261)
                      |...|+|++|+| |.++|++|+-|+.++||++...+. ......+.-|++++|.|||++.+.|+.+|.+++|+....+..
T Consensus       408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V-v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV-VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             cCCeeEEEEecccCCCcEeecccccceEEeecCcCee-EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence            999999999999 889999999999999999987665 445556678999999999999999999999999999876655


Q ss_pred             EEEeec-------CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC--cCeeEEEEeeCCCEEe
Q 024868          190 TFLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISLDGKYLA  260 (261)
Q Consensus       190 ~~~~~~-------~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~dg~~la  260 (261)
                      .....+       ....|+++.|.|...--    ++..+.|..|+|||.++.+++..+.+..  ..-....|++||++|+
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~----vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV  562 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDE----VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV  562 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCe----EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence            444321       12269999999865531    4667788999999998877776666544  2345688999999987


Q ss_pred             C
Q 024868          261 M  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus       563 s  563 (712)
T KOG0283|consen  563 S  563 (712)
T ss_pred             E
Confidence            3

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=5e-28  Score=208.12  Aligned_cols=232  Identities=14%  Similarity=0.133  Sum_probs=180.1

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee--cCCeEEeeecCCCCCceEEEECC-CCCeEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNP-SGDDFV   79 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~   79 (261)
                      ..++|++++|+|+   ..++++|+.++        .|..|+.......  ........+. +...+.+++|+| ++.+|+
T Consensus       482 ~~~~V~~i~fs~d---g~~latgg~D~--------~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~la  549 (793)
T PLN00181        482 SSNLVCAIGFDRD---GEFFATAGVNK--------KIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVA  549 (793)
T ss_pred             CCCcEEEEEECCC---CCEEEEEeCCC--------EEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEE
Confidence            3678999999985   56899999999        7777775431100  0001112233 346789999987 578899


Q ss_pred             EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCcee
Q 024868           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (261)
Q Consensus        80 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~  158 (261)
                      +++.||+|++||+.++...       .....|...|.+++|+| ++.+|++++.|+.|++||++++..+..+. ++..+.
T Consensus       550 s~~~Dg~v~lWd~~~~~~~-------~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~  621 (793)
T PLN00181        550 SSNFEGVVQVWDVARSQLV-------TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANIC  621 (793)
T ss_pred             EEeCCCeEEEEECCCCeEE-------EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeE
Confidence            9999999999999876531       11224668899999997 78999999999999999999887765544 446789


Q ss_pred             EEEEc-CCCCEEEEecCCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC--
Q 024868          159 DMDFS-LDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--  234 (261)
Q Consensus       159 ~~~~s-~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~--  234 (261)
                      ++.|+ +++.+|++|+.|+.|++||+++++ ++..+..|.. .|.++.|. ++.+     +++++.|++|++||++.+  
T Consensus       622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~~~-----lvs~s~D~~ikiWd~~~~~~  694 (793)
T PLN00181        622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DSST-----LVSSSTDNTLKLWDLSMSIS  694 (793)
T ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CCCE-----EEEEECCCEEEEEeCCCCcc
Confidence            99995 579999999999999999998765 4556666654 69999997 5666     688999999999999743  


Q ss_pred             ----eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          235 ----NKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       235 ----~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                          +.+..+..|...+..++|+|++++||+
T Consensus       695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~las  725 (793)
T PLN00181        695 GINETPLHSFMGHTNVKNFVGLSVSDGYIAT  725 (793)
T ss_pred             ccCCcceEEEcCCCCCeeEEEEcCCCCEEEE
Confidence                456677788888999999999999874

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=8e-28  Score=194.66  Aligned_cols=229  Identities=9%  Similarity=0.051  Sum_probs=167.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCce--ecCCeEEeeecCCCCCceEEEECCCCCeE-EE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV--YTSPLVTYVFDESEGDPMTIAVNPSGDDF-VC   80 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~   80 (261)
                      .++|.+++|+|..  .+++++|+.|+        .|..||..+...  .........+.+|...|.+++|+|++..+ ++
T Consensus        74 ~~~V~~lafsP~~--~~lLASgS~Dg--------tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS  143 (568)
T PTZ00420         74 TSSILDLQFNPCF--SEILASGSEDL--------TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCS  143 (568)
T ss_pred             CCCEEEEEEcCCC--CCEEEEEeCCC--------eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEE
Confidence            5789999999852  56899999999        888888754321  00011234578899999999999998764 68


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCcee--
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL--  158 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~--  158 (261)
                      ++.|++|++||+.++...        ..+.+...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|.+.+.  
T Consensus       144 gS~DgtIrIWDl~tg~~~--------~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~  215 (568)
T PTZ00420        144 SGFDSFVNIWDIENEKRA--------FQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK  215 (568)
T ss_pred             EeCCCeEEEEECCCCcEE--------EEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE
Confidence            899999999999887641        1122356799999999999999999999999999999988777777765432  


Q ss_pred             ---EEEEcCCCCEEEEecCCC----cEEEEEccC-CcEEEEEeecCCCceEEEEEecC-CCcceEEEEEeeCCCcEEEEE
Q 024868          159 ---DMDFSLDSEFLATTSTDG----SARIWKTED-GVAWTFLTRNSDEKIELCRFSKD-GTKPFLFCTVQRGDKALLAVY  229 (261)
Q Consensus       159 ---~~~~s~~~~~l~~~~~d~----~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~-~~~~~~~~~~~~~~d~~i~~~  229 (261)
                         ...|++++.+|++++.|+    +|+|||+++ ++++..+..+....+....|.++ |.+     +++|..|++|++|
T Consensus       216 ~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l-----~lsGkGD~tIr~~  290 (568)
T PTZ00420        216 NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI-----YLIGKGDGNCRYY  290 (568)
T ss_pred             EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE-----EEEEECCCeEEEE
Confidence               234568999999877664    799999995 66666654333222222334444 554     5788899999999


Q ss_pred             ECCCCeEEeeee--ccCcCeeEEEEeeCC
Q 024868          230 DISTWNKIGHKR--LLRKPASVLSISLDG  256 (261)
Q Consensus       230 d~~~~~~~~~~~--~~~~~v~~~~~s~dg  256 (261)
                      ++..+... .+.  .+..+...++|.|.-
T Consensus       291 e~~~~~~~-~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        291 QHSLGSIR-KVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EccCCcEE-eecccccCCCccceEEcccc
Confidence            99876532 222  244677888998853

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=1.2e-28  Score=184.55  Aligned_cols=225  Identities=15%  Similarity=0.223  Sum_probs=190.8

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      ++.+...|.   .+.+.+||.|.        .+..||....++      ...+++|...|+.+.++|+...+++++.|..
T Consensus       222 i~ald~~~s---~~~ilTGG~d~--------~av~~d~~s~q~------l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~  284 (506)
T KOG0289|consen  222 ITALDIIPS---SSKILTGGEDK--------TAVLFDKPSNQI------LATLKGHTKKITSVKFHKDLDTVITASADEI  284 (506)
T ss_pred             eeEEeecCC---CCcceecCCCC--------ceEEEecchhhh------hhhccCcceEEEEEEeccchhheeecCCcce
Confidence            444444442   56888999988        778888887776      5679999999999999999999999999999


Q ss_pred             EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC--CceeEEEEcC
Q 024868           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSL  164 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~  164 (261)
                      |++|.......       ......|.++|+.+..+|.|.||++++.|++..+.|++++..+.......  -.+++.+|+|
T Consensus       285 i~vws~~~~s~-------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  285 IRVWSVPLSSE-------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             EEeeccccccC-------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence            99999977653       23344567899999999999999999999999999999998765544322  2689999999


Q ss_pred             CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC
Q 024868          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (261)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  244 (261)
                      ||.+|.+|..|+.++|||+.++..+..|.+|.. +|..++|+.+|-+     ++++.+|+.|++||+|.-+..+++....
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~-----Lat~add~~V~lwDLRKl~n~kt~~l~~  431 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYW-----LATAADDGSVKLWDLRKLKNFKTIQLDE  431 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceE-----EEEEecCCeEEEEEehhhcccceeeccc
Confidence            999999999999999999999999999998655 7999999999988     7999999999999999888776666443


Q ss_pred             -cCeeEEEEeeCCCEEeC
Q 024868          245 -KPASVLSISLDGKYLAM  261 (261)
Q Consensus       245 -~~v~~~~~s~dg~~la~  261 (261)
                       .++.++.|.+.|++|+.
T Consensus       432 ~~~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  432 KKEVNSLSFDQSGTYLGI  449 (506)
T ss_pred             cccceeEEEcCCCCeEEe
Confidence             47999999999999873

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.7e-28  Score=191.86  Aligned_cols=231  Identities=16%  Similarity=0.179  Sum_probs=190.8

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..|+.++|--+  ..+.++++...+        ++..|+..+..       ...+.+|++.|.+++...+|.+|++++.|
T Consensus       324 dEI~Dm~~lG~--e~~~laVATNs~--------~lr~y~~~~~~-------c~ii~GH~e~vlSL~~~~~g~llat~sKD  386 (775)
T KOG0319|consen  324 DEILDMKFLGP--EESHLAVATNSP--------ELRLYTLPTSY-------CQIIPGHTEAVLSLDVWSSGDLLATGSKD  386 (775)
T ss_pred             hhheeeeecCC--ccceEEEEeCCC--------ceEEEecCCCc-------eEEEeCchhheeeeeecccCcEEEEecCC
Confidence            45677777543  256777777777        77777777766       34789999999999977788999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEE-----e----eccccC
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRII-----L----DEPKAH  154 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~-----~----~~~~~~  154 (261)
                      .++++|.++.+.......   .....|.+.|.+++++..+ .+|++++.|.++++|++...+..     .    ....|.
T Consensus       387 ~svilWr~~~~~~~~~~~---a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd  463 (775)
T KOG0319|consen  387 KSVILWRLNNNCSKSLCV---AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD  463 (775)
T ss_pred             ceEEEEEecCCcchhhhh---hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence            999999995554322211   2334567889999998754 68999999999999999762211     1    123466


Q ss_pred             CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      ..|.+++.+|+.+++|+||.|.+.+||++.+.+...++.+|..+ ++++.|+|..+.     +++++.|.+|+||.+.+.
T Consensus       464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG-vw~V~Fs~~dq~-----laT~SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG-VWCVSFSKNDQL-----LATCSGDKTVKIWSISTF  537 (775)
T ss_pred             ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc-eEEEEeccccce-----eEeccCCceEEEEEeccc
Confidence            78999999999999999999999999999999999999999875 999999999987     799999999999999999


Q ss_pred             eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          235 NKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+++++.+|...|..++|-.+|+.|++
T Consensus       538 SClkT~eGH~~aVlra~F~~~~~qliS  564 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLRASFIRNGKQLIS  564 (775)
T ss_pred             eeeeeecCccceeEeeeeeeCCcEEEe
Confidence            999999999999999999999998863

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=4.6e-27  Score=190.29  Aligned_cols=199  Identities=9%  Similarity=0.100  Sum_probs=143.9

Q ss_pred             EeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCcccccee-eeeCCCCCCCCCeEEEEEeeCCcE-EEEecc
Q 024868           56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLL-AKKMPPLQDAGPQKCLSFSVDGSR-FAAGGV  132 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~  132 (261)
                      ...+.+|.+.|.+++|+|+ +++|++|+.|++|++||+.......... ........|...|.+++|+|++.. +++++.
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            4568899999999999996 7899999999999999997643211100 000112345688999999998876 468889


Q ss_pred             CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc----eEEEEEecC
Q 024868          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKD  208 (261)
Q Consensus       133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~p~  208 (261)
                      |++|++||+++++....+. ++..|.+++|+|+|++|++++.|+.|+|||+++++.+..+..|.+..    +....|+++
T Consensus       147 DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d  225 (568)
T PTZ00420        147 DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD  225 (568)
T ss_pred             CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence            9999999999888665543 55689999999999999999999999999999999998888776531    122335588


Q ss_pred             CCcceEEEEEeeCCC----cEEEEEECCC-CeEEeeeeccC--cCeeEEEEeeCCCEEe
Q 024868          209 GTKPFLFCTVQRGDK----ALLAVYDIST-WNKIGHKRLLR--KPASVLSISLDGKYLA  260 (261)
Q Consensus       209 ~~~~~~~~~~~~~~d----~~i~~~d~~~-~~~~~~~~~~~--~~v~~~~~s~dg~~la  260 (261)
                      +.+     +++++.+    ++|++||+++ .+++.......  +.+......++|.+++
T Consensus       226 ~~~-----IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l  279 (568)
T PTZ00420        226 DNY-----ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL  279 (568)
T ss_pred             CCE-----EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEE
Confidence            887     4555444    4899999995 45554433222  2222232334466554

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=5.9e-28  Score=177.91  Aligned_cols=235  Identities=14%  Similarity=0.172  Sum_probs=185.6

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ++||.+++|....+....+++++.|.      .+.+|.|+........    ...-.+|...|.+++..++|.++++|+.
T Consensus       144 t~~ik~v~~v~~n~~~~~fvsas~Dq------tl~Lw~~~~~~~~~~~----~~~~~GHk~~V~sVsv~~sgtr~~SgS~  213 (423)
T KOG0313|consen  144 TGPIKSVAWVIKNSSSCLFVSASMDQ------TLRLWKWNVGENKVKA----LKVCRGHKRSVDSVSVDSSGTRFCSGSW  213 (423)
T ss_pred             CcceeeeEEEecCCccceEEEecCCc------eEEEEEecCchhhhhH----HhHhcccccceeEEEecCCCCeEEeecc
Confidence            68999999976554455788998887      3377888876655411    2233499999999999999999999999


Q ss_pred             CCcEEEEEEeCCccc--------------c----ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868           84 NGGCKLFEVYGGATD--------------I----NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (261)
Q Consensus        84 dg~i~i~~~~~~~~~--------------~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  145 (261)
                      |..|.+|+.......              .    ..-.+......|..+|.++.|++ ...+++++.|.+|+.||+.+++
T Consensus       214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence            999999993321110              0    00001112234678999999998 6688999999999999999998


Q ss_pred             EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc---EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC
Q 024868          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV---AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (261)
Q Consensus       146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~  222 (261)
                      .+..+ .....+.+++.+|..++|++|+.|..+++||.+++.   ..+++.+|.+ .|.++.|+|.+.+.    +++++.
T Consensus       293 ~~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~----~~S~S~  366 (423)
T KOG0313|consen  293 LKSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQ----LVSGSY  366 (423)
T ss_pred             ceeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceE----EEEEec
Confidence            86544 445689999999999999999999999999999753   4456777766 79999999999875    589999


Q ss_pred             CcEEEEEECCCCe-EEeeeeccCcCeeEEEEeeC
Q 024868          223 KALLAVYDISTWN-KIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       223 d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~d  255 (261)
                      |+++++||+++.+ ++..+..|...|.++.|+.-
T Consensus       367 D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~  400 (423)
T KOG0313|consen  367 DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG  400 (423)
T ss_pred             CCeEEEEEeccCCCcceeeccCCceEEEEeccCC
Confidence            9999999999887 78888999999999999764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.7e-28  Score=178.75  Aligned_cols=230  Identities=13%  Similarity=0.123  Sum_probs=178.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ...|.-+.|+++   +.++|+++.|...      -+|....+.. +    .....+.+|..+|..+.||||.++|++++.
T Consensus       224 tdEVWfl~FS~n---GkyLAsaSkD~Ta------iiw~v~~d~~-~----kl~~tlvgh~~~V~yi~wSPDdryLlaCg~  289 (519)
T KOG0293|consen  224 TDEVWFLQFSHN---GKYLASASKDSTA------IIWIVVYDVH-F----KLKKTLVGHSQPVSYIMWSPDDRYLLACGF  289 (519)
T ss_pred             CCcEEEEEEcCC---CeeEeeccCCceE------EEEEEecCcc-e----eeeeeeecccCceEEEEECCCCCeEEecCc
Confidence            456888899885   7899999998833      4555544443 1    335678899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-CceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~  162 (261)
                      +..+.+||..++......      ...+...+.+++|.|||..+++|+.|+++..||++ +.......+-. ..|.+++.
T Consensus       290 ~e~~~lwDv~tgd~~~~y------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai  362 (519)
T KOG0293|consen  290 DEVLSLWDVDTGDLRHLY------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI  362 (519)
T ss_pred             hHheeeccCCcchhhhhc------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEE
Confidence            999999999998762221      11123678999999999999999999999999985 43333333333 36999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE---------------------------
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF---------------------------  215 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~---------------------------  215 (261)
                      ++||+++++.+.|..|++++..+.........+  .++++.+.|.|+++ +++                           
T Consensus       363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~k~-~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~  439 (519)
T KOG0293|consen  363 TYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDGKL-ALVNLQDQEIHLWDLEENKLVRKYFGHKQG  439 (519)
T ss_pred             cCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCCcE-EEEEcccCeeEEeecchhhHHHHhhccccc
Confidence            999999999999999999998765544333322  24677777766665 222                           


Q ss_pred             --------------EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC
Q 024868          216 --------------CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       216 --------------~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~  257 (261)
                                    .+++|++|+.|+||+..+++++..+.+|...|.+++|+|...
T Consensus       440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p  495 (519)
T KOG0293|consen  440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADP  495 (519)
T ss_pred             ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCH
Confidence                          246799999999999999999999999999999999999654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.5e-29  Score=182.38  Aligned_cols=236  Identities=16%  Similarity=0.183  Sum_probs=190.9

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCC--eEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP--LVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      +.-+-|..|+|+   ..++++|+.||        .|-+||..++++....  .....+--+.++|.|+.|+.|...+++|
T Consensus       213 KSh~EcA~FSPD---gqyLvsgSvDG--------FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG  281 (508)
T KOG0275|consen  213 KSHVECARFSPD---GQYLVSGSVDG--------FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG  281 (508)
T ss_pred             ccchhheeeCCC---CceEeeccccc--------eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc
Confidence            456778999996   67999999999        6666666666543221  1222344567899999999999999999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      +.||.|++|.+.++.+..++.      ..|...|+++.||.|+..+++++.|.++++--+++|+.+..+.+|.+.|....
T Consensus       282 sqDGkIKvWri~tG~ClRrFd------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  282 SQDGKIKVWRIETGQCLRRFD------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             CcCCcEEEEEEecchHHHHhh------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence            999999999999998844332      13567899999999999999999999999999999999988999999999999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC---------------------------------------------
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------------------------------------------  196 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------------------------------------  196 (261)
                      |++||.++++++.||+|++|+.++.+++.+++...                                             
T Consensus       356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkR  435 (508)
T KOG0275|consen  356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKR  435 (508)
T ss_pred             EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCc
Confidence            99999999999999999999998776654443210                                             


Q ss_pred             -CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          197 -DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       197 -~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                       ++..-+++.+|.|.+     +...++|+.++.|...+|+...++..|+..+-.++-+|.-+.||+
T Consensus       436 EgGdFi~~~lSpkGew-----iYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAs  496 (508)
T KOG0275|consen  436 EGGDFINAILSPKGEW-----IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLAS  496 (508)
T ss_pred             cCCceEEEEecCCCcE-----EEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhh
Confidence             111235667888888     577889999999999999998888889888888888887776653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.3e-28  Score=194.92  Aligned_cols=228  Identities=12%  Similarity=0.153  Sum_probs=189.9

Q ss_pred             CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      +..|||..++|+|.   +.++++||.|-        +|.+|+.+...+      ...+.+|-+-|..+.|++.-.+++++
T Consensus        49 eHdGpVRgv~FH~~---qplFVSGGDDy--------kIkVWnYk~rrc------lftL~GHlDYVRt~~FHheyPWIlSA  111 (1202)
T KOG0292|consen   49 EHDGPVRGVDFHPT---QPLFVSGGDDY--------KIKVWNYKTRRC------LFTLLGHLDYVRTVFFHHEYPWILSA  111 (1202)
T ss_pred             ccCCccceeeecCC---CCeEEecCCcc--------EEEEEeccccee------hhhhccccceeEEeeccCCCceEEEc
Confidence            46799999999995   67999998888        666676666665      66789999999999999999999999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce---------------
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---------------  145 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---------------  145 (261)
                      ++|.+|+||+..+..+        +..+ .|...|.|.+|+|....+++++-|.+|++||+.-.+               
T Consensus       112 SDDQTIrIWNwqsr~~--------iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~  183 (1202)
T KOG0292|consen  112 SDDQTIRIWNWQSRKC--------IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG  183 (1202)
T ss_pred             cCCCeEEEEeccCCce--------EEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence            9999999999999876        2222 355789999999999999999999999999984110               


Q ss_pred             -------------EE-eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCC
Q 024868          146 -------------II-LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG  209 (261)
Q Consensus       146 -------------~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~  209 (261)
                                   .+ ..+.+|...|.-++|+|.-.++++|++|..|++|.+..-+.  +.+..+|.+ .|.++-|+|..
T Consensus       184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q  262 (1202)
T KOG0292|consen  184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQ  262 (1202)
T ss_pred             cccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecCcc
Confidence                         01 12234556799999999999999999999999999975442  345566666 69999999988


Q ss_pred             CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ..     +++.++|++|++||+...+.+.++.......+.++-+|..+.+|
T Consensus       263 ~l-----IlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA  308 (1202)
T KOG0292|consen  263 DL-----ILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA  308 (1202)
T ss_pred             ce-----eEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee
Confidence            87     79999999999999999998888877778889999999888776

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=9e-29  Score=173.15  Aligned_cols=234  Identities=15%  Similarity=0.206  Sum_probs=197.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..||-.++|+|--....++++++.|+        +=..-+.+++.+      .-.+.+|.+.|.....+.+..+.++++.
T Consensus        14 trpvvdl~~s~itp~g~flisa~kd~--------~pmlr~g~tgdw------igtfeghkgavw~~~l~~na~~aasaaa   79 (334)
T KOG0278|consen   14 TRPVVDLAFSPITPDGYFLISASKDG--------KPMLRNGDTGDW------IGTFEGHKGAVWSATLNKNATRAASAAA   79 (334)
T ss_pred             CcceeEEeccCCCCCceEEEEeccCC--------CchhccCCCCCc------EEeeeccCcceeeeecCchhhhhhhhcc
Confidence            57899999988766788899999988        555556777777      6679999999999999999988999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~  162 (261)
                      |=+-++||.-++..        +..+.|+.-|..++|+.|.++|++|+.+.-+++||++..+. ...+.+|.+.|..+-|
T Consensus        80 dftakvw~a~tgde--------lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w  151 (334)
T KOG0278|consen   80 DFTAKVWDAVTGDE--------LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW  151 (334)
T ss_pred             cchhhhhhhhhhhh--------hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence            99999999998875        77788888999999999999999999999999999987653 3456677789999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE---------------------------
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF---------------------------  215 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~---------------------------  215 (261)
                      ....+.++++++|+.|++||.+++..++++...  .+|+++..+++|+++.+.                           
T Consensus       152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~S  229 (334)
T KOG0278|consen  152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVES  229 (334)
T ss_pred             eccCceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccccc
Confidence            998888999899999999999999999888743  347777777777752211                           


Q ss_pred             --------EEEeeCCCcEEEEEECCCCeEEeee-eccCcCeeEEEEeeCCCEEeC
Q 024868          216 --------CTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       216 --------~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~dg~~la~  261 (261)
                              ..+.|++|..++.||..+++.+... .+|.++|.++.|+|||...|+
T Consensus       230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS  284 (334)
T ss_pred             ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence                    1356889999999999999988774 788899999999999987653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=2.2e-28  Score=181.93  Aligned_cols=224  Identities=14%  Similarity=0.121  Sum_probs=183.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .++|+.++|.++   +..+++++.++        .+..|+.+...+      ...+.+|++.|+++.|......+++|+.
T Consensus       219 ~g~it~~d~d~~---~~~~iAas~d~--------~~r~Wnvd~~r~------~~TLsGHtdkVt~ak~~~~~~~vVsgs~  281 (459)
T KOG0288|consen  219 LGNITSIDFDSD---NKHVIAASNDK--------NLRLWNVDSLRL------RHTLSGHTDKVTAAKFKLSHSRVVSGSA  281 (459)
T ss_pred             CCCcceeeecCC---CceEEeecCCC--------ceeeeeccchhh------hhhhcccccceeeehhhccccceeeccc
Confidence            378999999875   45666666777        677778777766      6789999999999999887777999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |.+++.||+....+        ....-....+.++..+  ...++++..|++|++||+++......... ++.|+++..+
T Consensus       282 DRtiK~WDl~k~~C--------~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-gg~vtSl~ls  350 (459)
T KOG0288|consen  282 DRTIKLWDLQKAYC--------SKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL-GGRVTSLDLS  350 (459)
T ss_pred             cchhhhhhhhhhhe--------eccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeec-CcceeeEeec
Confidence            99999999998766        2222223456666665  55788888999999999999888766554 4599999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecC---CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      +++..+.+++.|..+.+.|+++.+....+....   ....+.+.|||++.|     +++|+.||.|+||++.+++.....
T Consensus       351 ~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y-----vaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  351 MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY-----VAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce-----eeeccCCCcEEEEEccCceEEEEe
Confidence            999999999999999999999988887775422   224788999999999     799999999999999999988776


Q ss_pred             eccCc--CeeEEEEeeCCCEEe
Q 024868          241 RLLRK--PASVLSISLDGKYLA  260 (261)
Q Consensus       241 ~~~~~--~v~~~~~s~dg~~la  260 (261)
                      .....  .|.+++|+|.|.+|+
T Consensus       426 ~~s~s~~aI~s~~W~~sG~~Ll  447 (459)
T KOG0288|consen  426 SLSTSNAAITSLSWNPSGSGLL  447 (459)
T ss_pred             ccCCCCcceEEEEEcCCCchhh
Confidence            65554  499999999999876

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=3.2e-28  Score=182.89  Aligned_cols=241  Identities=15%  Similarity=0.162  Sum_probs=181.1

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc--eec--CCeEEeeecCCCCCceEEEECCCC-CeEE
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS--VYT--SPLVTYVFDESEGDPMTIAVNPSG-DDFV   79 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~   79 (261)
                      |.|..+..-|.  +.++||+++..+        .+++||.....  ...  .......+.+|...-++++|++.. -.|+
T Consensus       125 gEVnRaRymPQ--np~iVAt~t~~~--------dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll  194 (422)
T KOG0264|consen  125 GEVNRARYMPQ--NPNIVATKTSSG--------DVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL  194 (422)
T ss_pred             ccchhhhhCCC--CCcEEEecCCCC--------CEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence            44555555553  467788777777        66777654321  110  223445788999888899999853 3688


Q ss_pred             EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccC--ceEEeeccccCCc
Q 024868           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS--LRIILDEPKAHKS  156 (261)
Q Consensus        80 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~  156 (261)
                      +++.|+++.+||+.......+..........|...|..++|+| +..+|++++.|+.+.|||+++  .+.......|..+
T Consensus       195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~  274 (422)
T KOG0264|consen  195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE  274 (422)
T ss_pred             eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence            9999999999999876653233333333445678999999999 567888999999999999994  4555556677789


Q ss_pred             eeEEEEcC-CCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          157 VLDMDFSL-DSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       157 v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      +.+++|+| ++..||+++.|++|++||+++- +++.++..|.. .|..+.|+|....+    +++++.|+.+.+||+..-
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etv----LASSg~D~rl~vWDls~i  349 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETV----LASSGTDRRLNVWDLSRI  349 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCce----eEecccCCcEEEEecccc
Confidence            99999999 6678899999999999999974 46778887776 59999999998874    688999999999998642


Q ss_pred             e--------------EEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          235 N--------------KIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       235 ~--------------~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .              ++..-.+|...|..+.|+|+..+++
T Consensus       350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I  389 (422)
T KOG0264|consen  350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTI  389 (422)
T ss_pred             ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEE
Confidence            1              1233446778999999999987764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.6e-28  Score=194.47  Aligned_cols=227  Identities=15%  Similarity=0.188  Sum_probs=192.9

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      +.+|..++|+|.   +..+.++-..|        .|..||-..+.+      ...+.+|.++|..++|+|.+.++++|++
T Consensus         9 SsRvKglsFHP~---rPwILtslHsG--------~IQlWDYRM~tl------i~rFdeHdGpVRgv~FH~~qplFVSGGD   71 (1202)
T KOG0292|consen    9 SSRVKGLSFHPK---RPWILTSLHSG--------VIQLWDYRMGTL------IDRFDEHDGPVRGVDFHPTQPLFVSGGD   71 (1202)
T ss_pred             cccccceecCCC---CCEEEEeecCc--------eeeeehhhhhhH------HhhhhccCCccceeeecCCCCeEEecCC
Confidence            678999999996   55788887778        788888877776      5678899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |-+|++|+.+..++.       .....|-..|+.+.|++.--+|++++.|.+|+||+..+++++..+.+|...|.|..|+
T Consensus        72 DykIkVWnYk~rrcl-------ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   72 DYKIKVWNYKTRRCL-------FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH  144 (1202)
T ss_pred             ccEEEEEecccceeh-------hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence            999999999988862       3344567899999999999999999999999999999999998888888899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccC--------C--------------------c-EEEEEeecCCCceEEEEEecCCCcceE
Q 024868          164 LDSEFLATTSTDGSARIWKTED--------G--------------------V-AWTFLTRNSDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~--------~--------------------~-~~~~~~~~~~~~v~~~~~~p~~~~~~~  214 (261)
                      |....++++|-|.+|++||+..        +                    - ..+.+.+|.. .|+-++|+|.-..   
T Consensus       145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpl---  220 (1202)
T KOG0292|consen  145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPL---  220 (1202)
T ss_pred             CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcce---
Confidence            9999999999999999999852        1                    0 1123445544 5999999998887   


Q ss_pred             EEEEeeCCCcEEEEEECCCCeE--EeeeeccCcCeeEEEEeeCCCEEe
Q 024868          215 FCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                        +++|++|+.|++|.+..-+.  +.+..+|.+.|+++-|+|.-..++
T Consensus       221 --iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl  266 (1202)
T KOG0292|consen  221 --IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL  266 (1202)
T ss_pred             --EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence              79999999999999976553  456778999999999999766554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=3e-27  Score=177.05  Aligned_cols=230  Identities=17%  Similarity=0.261  Sum_probs=188.9

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      -.|+.+.++|+   ...+++++.+.        .|++|.......      ......|..+|+.+..+|.|++|++++.|
T Consensus       262 kki~~v~~~~~---~~~v~~aSad~--------~i~vws~~~~s~------~~~~~~h~~~V~~ls~h~tgeYllsAs~d  324 (506)
T KOG0289|consen  262 KKITSVKFHKD---LDTVITASADE--------IIRVWSVPLSSE------PTSSRPHEEPVTGLSLHPTGEYLLSASND  324 (506)
T ss_pred             eEEEEEEeccc---hhheeecCCcc--------eEEeeccccccC------ccccccccccceeeeeccCCcEEEEecCC
Confidence            46777788885   55777888887        788887655443      34577899999999999999999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  164 (261)
                      +.....|++++.......    .. ...-.+++.+|+|||-.|.+|..|+.+++||+.++.....+.+|.++|..++|+.
T Consensus       325 ~~w~Fsd~~~g~~lt~vs----~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE  399 (506)
T KOG0289|consen  325 GTWAFSDISSGSQLTVVS----DE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE  399 (506)
T ss_pred             ceEEEEEccCCcEEEEEe----ec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc
Confidence            999999999887522211    11 1224589999999999999999999999999999988888999889999999999


Q ss_pred             CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC--CCCeEEeeeec
Q 024868          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI--STWNKIGHKRL  242 (261)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~--~~~~~~~~~~~  242 (261)
                      +|-+|+++++|+.|++||++.-+..+++.......+.++.|.+.|++     ++.++.+=+|++++-  +++.++..+..
T Consensus       400 NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~-----L~~~g~~l~Vy~~~k~~k~W~~~~~~~~  474 (506)
T KOG0289|consen  400 NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY-----LGIAGSDLQVYICKKKTKSWTEIKELAD  474 (506)
T ss_pred             CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCe-----EEeecceeEEEEEecccccceeeehhhh
Confidence            99999999999999999999988888887766667999999999998     566777756666653  36777777778


Q ss_pred             cCcCeeEEEEeeCCCEEeC
Q 024868          243 LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la~  261 (261)
                      |.+....+.|..+-+++++
T Consensus       475 ~sg~st~v~Fg~~aq~l~s  493 (506)
T KOG0289|consen  475 HSGLSTGVRFGEHAQYLAS  493 (506)
T ss_pred             cccccceeeecccceEEee
Confidence            8788889999988888763

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5e-26  Score=164.20  Aligned_cols=191  Identities=15%  Similarity=0.192  Sum_probs=154.4

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  135 (261)
                      ...+.+|...|.+++.+|-++.+++++.|++|++||++...+...+        . ...-..++|+|+|-++|++.....
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--------~-~~~~pi~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--------N-LSGRPIAAFDPEGLIFALANGSEL  163 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--------e-cCCCcceeECCCCcEEEEecCCCe
Confidence            4567899999999999998899999999999999999977652221        1 112234789999999999987779


Q ss_pred             EEEEEccCce--E--Eeecc-ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc--eEEEEEecC
Q 024868          136 LRIMHWPSLR--I--ILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK--IELCRFSKD  208 (261)
Q Consensus       136 i~~~d~~~~~--~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--v~~~~~~p~  208 (261)
                      |++||++.-.  +  ...+. ....+...+.|||||++++.++..+.+++.|.-+|..+.++..+....  .-+.+|.||
T Consensus       164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd  243 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD  243 (311)
T ss_pred             EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence            9999998642  1  11222 234578999999999999999999999999999999988887665431  246789999


Q ss_pred             CCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec-cCcCeeEEEEeeCCCEEe
Q 024868          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~dg~~la  260 (261)
                      +++     ++++++||+|.+|++++++.+....+ +.+++.++.|+|.-..+|
T Consensus       244 s~F-----vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~  291 (311)
T KOG1446|consen  244 SKF-----VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV  291 (311)
T ss_pred             CcE-----EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence            998     78999999999999999999887776 578899999999766554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.9e-27  Score=168.01  Aligned_cols=229  Identities=13%  Similarity=0.154  Sum_probs=181.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCC-ceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT-SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .-.|.+++|+|.  ..+++++|+.|+        +|..|+.+.. .+  .   ......|.++|.+++|+.||..+++|+
T Consensus        27 ~DsIS~l~FSP~--~~~~~~A~SWD~--------tVR~wevq~~g~~--~---~ka~~~~~~PvL~v~WsddgskVf~g~   91 (347)
T KOG0647|consen   27 EDSISALAFSPQ--ADNLLAAGSWDG--------TVRIWEVQNSGQL--V---PKAQQSHDGPVLDVCWSDDGSKVFSGG   91 (347)
T ss_pred             ccchheeEeccc--cCceEEecccCC--------ceEEEEEecCCcc--c---chhhhccCCCeEEEEEccCCceEEeec
Confidence            456889999994  478888999999        6666665542 22  1   234667899999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc--EEEEeccCCeEEEEEccCceEEeecc---------
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEP---------  151 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~---------  151 (261)
                      -|+.+++||+.+++.        ...-.|..+|..+.|-+...  .|++|+.|.+|+.||.+...++..+.         
T Consensus        92 ~Dk~~k~wDL~S~Q~--------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~D  163 (347)
T KOG0647|consen   92 CDKQAKLWDLASGQV--------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAAD  163 (347)
T ss_pred             cCCceEEEEccCCCe--------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehh
Confidence            999999999999874        33445788999999987554  89999999999999997654331110         


Q ss_pred             ----------------------------cc----CCceeEEEEcCCCCEEEEecCCCcEEEEEccCC--cEEEEEeecCC
Q 024868          152 ----------------------------KA----HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSD  197 (261)
Q Consensus       152 ----------------------------~~----~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~  197 (261)
                                                  .+    +-.+++++..+|....+.|+-+|.+.|..+..+  +.-.+++.|..
T Consensus       164 v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~  243 (347)
T KOG0647|consen  164 VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS  243 (347)
T ss_pred             ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence                                        11    124788888888888899999999999988876  33345555542


Q ss_pred             --------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          198 --------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       198 --------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                              ..|++++|+|....     +++.+.||++.+||-.....++....+..+|++..|+.+|.++|
T Consensus       244 ~~~~~~~VYaVNsi~FhP~hgt-----lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  244 TNSVNDDVYAVNSIAFHPVHGT-----LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             CCCCCCceEEecceEeecccce-----EEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence                    24788999997776     69999999999999988888888888999999999999999886

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1e-26  Score=163.12  Aligned_cols=234  Identities=13%  Similarity=0.143  Sum_probs=173.3

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEEecC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d   84 (261)
                      .=|++.|+|--++...+|++..-|   ..+.-++++.+.....-    +.+..--.-.+.+..++|+++ .+.+++++.|
T Consensus        10 ~GysvqfSPf~~nrLavAt~q~yG---l~G~G~L~ile~~~~~g----i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD   82 (311)
T KOG0277|consen   10 HGYSVQFSPFVENRLAVATAQHYG---LAGNGRLFILEVTDPKG----IQECQSYDTEDGLFDVAWSENHENQVIAASGD   82 (311)
T ss_pred             ccceeEecccccchhheeehhhcc---cccCceEEEEecCCCCC----eEEEEeeecccceeEeeecCCCcceEEEEecC
Confidence            347888988764444444443211   11122666666642221    112222224578999999995 4567888999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |++++||+.....+.      .....|...|.++.|++ +++.+++++-|++|++|+...++.+..+.+|...|+...|+
T Consensus        83 GSLrl~d~~~~s~Pi------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s  156 (311)
T KOG0277|consen   83 GSLRLFDLTMPSKPI------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS  156 (311)
T ss_pred             ceEEEeccCCCCcch------hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence            999999965443211      22334678999999999 56678888999999999999888888888888899999999


Q ss_pred             C-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeee
Q 024868          164 L-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKR  241 (261)
Q Consensus       164 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~  241 (261)
                      | .++.+++++.|+.+++||++.......+..|.. .+.++.|+.-+..+    +++++.|+.|+.||+++.+ ++..+.
T Consensus       157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~-Eil~cdw~ky~~~v----l~Tg~vd~~vr~wDir~~r~pl~eL~  231 (311)
T KOG0277|consen  157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS-EILCCDWSKYNHNV----LATGGVDNLVRGWDIRNLRTPLFELN  231 (311)
T ss_pred             CCCCCeEEEccCCceEEEEEecCCCceeEEEeccc-eeEeecccccCCcE----EEecCCCceEEEEehhhccccceeec
Confidence            9 678999999999999999986444444777764 59999999877763    7999999999999998755 566778


Q ss_pred             ccCcCeeEEEEeeCCC
Q 024868          242 LLRKPASVLSISLDGK  257 (261)
Q Consensus       242 ~~~~~v~~~~~s~dg~  257 (261)
                      +|+-.|..++|||.-.
T Consensus       232 gh~~AVRkvk~Sph~~  247 (311)
T KOG0277|consen  232 GHGLAVRKVKFSPHHA  247 (311)
T ss_pred             CCceEEEEEecCcchh
Confidence            8999999999999643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-26  Score=162.85  Aligned_cols=225  Identities=16%  Similarity=0.174  Sum_probs=184.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..|++-+.++.+   ..++.+++.|.        ..-+|-..+++.      .-.+.+|++.|.+++.+-+.+.+++|+.
T Consensus        10 ERplTqiKyN~e---GDLlFscaKD~--------~~~vw~s~nGer------lGty~GHtGavW~~Did~~s~~liTGSA   72 (327)
T KOG0643|consen   10 ERPLTQIKYNRE---GDLLFSCAKDS--------TPTVWYSLNGER------LGTYDGHTGAVWCCDIDWDSKHLITGSA   72 (327)
T ss_pred             ccccceEEecCC---CcEEEEecCCC--------CceEEEecCCce------eeeecCCCceEEEEEecCCcceeeeccc
Confidence            578999999986   56888888888        444444433332      4468899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-----CCeEEEEEcc-------CceEEeecc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWP-------SLRIILDEP  151 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~-------~~~~~~~~~  151 (261)
                      |.++++||++++++        ........+|..+.|+++|++++....     .+.|.++|++       ..++...+.
T Consensus        73 D~t~kLWDv~tGk~--------la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~  144 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQ--------LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP  144 (327)
T ss_pred             cceeEEEEcCCCcE--------EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence            99999999999986        444455678999999999998887753     4579999998       344566777


Q ss_pred             ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEE-eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       152 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      .+.+.+...-|.|-++.|++|..||.|.+||+++|+..... ..|.. .|+.++++||..+     .++++.|.+-++||
T Consensus       145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~-----FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTY-----FITGSKDTTAKLVD  218 (327)
T ss_pred             CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcc-ccccccccCCcce-----EEecccCccceeee
Confidence            77788999999999999999999999999999998655444 44444 6999999999998     69999999999999


Q ss_pred             CCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +++-+.++++. -..+|++.+++|-..+++
T Consensus       219 ~~tl~v~Kty~-te~PvN~aaisP~~d~Vi  247 (327)
T KOG0643|consen  219 VRTLEVLKTYT-TERPVNTAAISPLLDHVI  247 (327)
T ss_pred             ccceeeEEEee-ecccccceecccccceEE
Confidence            99998887665 457899999999766554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=3.4e-27  Score=194.13  Aligned_cols=242  Identities=14%  Similarity=0.136  Sum_probs=187.6

Q ss_pred             CCceeeEEEEEeeCCcceEEEEec--CCCCCCCCCceEEEEEcCCCCc---eec-CCeEEeeecCCCCCceEEEECCCCC
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGK--SSRASSSPSVLEIFSFDPKTTS---VYT-SPLVTYVFDESEGDPMTIAVNPSGD   76 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~~~---~~~-~~~~~~~~~~~~~~v~~~~~~~~~~   76 (261)
                      +...|++++.+|+   ...+++||  .|+..      .||.-++-...   ... .+.....+..|.+.|.|+.|+|||+
T Consensus        12 ~~~~IfSIdv~pd---g~~~aTgGq~~d~~~------~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~   82 (942)
T KOG0973|consen   12 NEKSIFSIDVHPD---GVKFATGGQVLDGGI------VIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS   82 (942)
T ss_pred             CCeeEEEEEecCC---ceeEecCCccccccc------eeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC
Confidence            4567999999996   56788888  55533      46655442211   111 2344567788999999999999999


Q ss_pred             eEEEEecCCcEEEEEEeCC-----------ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868           77 DFVCSTTNGGCKLFEVYGG-----------ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (261)
Q Consensus        77 ~l~~~~~dg~i~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  145 (261)
                      +||+|++|+.|.||+....           ...............|...|.+++|+|++.++++++.|++|.+|+..+.+
T Consensus        83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~  162 (942)
T KOG0973|consen   83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE  162 (942)
T ss_pred             eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce
Confidence            9999999999999999831           00111111222334577899999999999999999999999999999998


Q ss_pred             EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-----CceEEEEEecCCCcceEEEEEee
Q 024868          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                      .+..+.+|++.|..+.|.|-|++||+-++|++|+||++.+....+.+..+..     ...+.+.|||||+++.. .-+..
T Consensus       163 ~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las-~nA~n  241 (942)
T KOG0973|consen  163 LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS-PNAVN  241 (942)
T ss_pred             eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecc-hhhcc
Confidence            8888899999999999999999999999999999999887777777655432     24788999999998321 11223


Q ss_pred             CCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      +.-.++.|.+..+++.-..+.+|..++..+.|+|
T Consensus       242 ~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  242 GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             CCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence            3445899999999987778899999999999998

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.9e-27  Score=183.86  Aligned_cols=230  Identities=11%  Similarity=0.129  Sum_probs=192.3

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .+.+|.|+.++|.   ...+.++-.+|        .+..||.++..+      ...+.-..-+|.+..|-+-.+++++|+
T Consensus        12 rSdRVKsVd~HPt---ePw~la~LynG--------~V~IWnyetqtm------VksfeV~~~PvRa~kfiaRknWiv~Gs   74 (794)
T KOG0276|consen   12 RSDRVKSVDFHPT---EPWILAALYNG--------DVQIWNYETQTM------VKSFEVSEVPVRAAKFIARKNWIVTGS   74 (794)
T ss_pred             cCCceeeeecCCC---CceEEEeeecC--------eeEEEeccccee------eeeeeecccchhhheeeeccceEEEec
Confidence            5678999999995   55777777777        566666666554      333444466899999999899999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce-EEeeccccCCceeEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMD  161 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~  161 (261)
                      +|..|++|+..+.+..       .....|...|++++.+|.-.++++++.|-.|++||.+..= +.+.+.+|...|.+++
T Consensus        75 DD~~IrVfnynt~ekV-------~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~  147 (794)
T KOG0276|consen   75 DDMQIRVFNYNTGEKV-------KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA  147 (794)
T ss_pred             CCceEEEEecccceee-------EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence            9999999999998752       2223467899999999999999999999999999998653 4455566666899999


Q ss_pred             EcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       162 ~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      |+| |.+.+++++-|++|++|.+.+..+..++.+|..+ |+++.+-+.|...+   ++++++|.++++||..+..++.++
T Consensus       148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG-VN~Vdyy~~gdkpy---lIsgaDD~tiKvWDyQtk~CV~TL  223 (794)
T KOG0276|consen  148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG-VNCVDYYTGGDKPY---LISGADDLTIKVWDYQTKSCVQTL  223 (794)
T ss_pred             ecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC-cceEEeccCCCcce---EEecCCCceEEEeecchHHHHHHh
Confidence            999 7789999999999999999999999999988775 99999999886555   699999999999999999999999


Q ss_pred             eccCcCeeEEEEeeCCCEEe
Q 024868          241 RLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       241 ~~~~~~v~~~~~s~dg~~la  260 (261)
                      .+|...|+.+.|+|.=..++
T Consensus       224 eGHt~Nvs~v~fhp~lpiii  243 (794)
T KOG0276|consen  224 EGHTNNVSFVFFHPELPIII  243 (794)
T ss_pred             hcccccceEEEecCCCcEEE
Confidence            99999999999999766554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.1e-27  Score=177.98  Aligned_cols=225  Identities=16%  Similarity=0.201  Sum_probs=173.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      -.+|.+++|+|... ..+.++++.          .+..|+..+...      ...+....+.|.++.|..||++|++|+.
T Consensus        26 ~~~vssl~fsp~~P-~d~aVt~S~----------rvqly~~~~~~~------~k~~srFk~~v~s~~fR~DG~LlaaGD~   88 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHP-YDFAVTSSV----------RVQLYSSVTRSV------RKTFSRFKDVVYSVDFRSDGRLLAAGDE   88 (487)
T ss_pred             cCcceeEecCCCCC-CceEEeccc----------EEEEEecchhhh------hhhHHhhccceeEEEeecCCeEEEccCC
Confidence            46899999998542 334444443          577777665443      2234456688999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .|.|++||+.+... .      .....|..++....|+| ++..+++|+.|+.+++||+.+......+.+|...|++.+|
T Consensus        89 sG~V~vfD~k~r~i-L------R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~  161 (487)
T KOG0310|consen   89 SGHVKVFDMKSRVI-L------RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI  161 (487)
T ss_pred             cCcEEEeccccHHH-H------HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence            99999999655222 1      12234568899999999 5567788889999999999988876677888899999999


Q ss_pred             cCC-CCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEee
Q 024868          163 SLD-SEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGH  239 (261)
Q Consensus       163 s~~-~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~  239 (261)
                      +|. +.++++|+.||.|++||++.. ..+.++.  ++.+|.++.+-|.|..     +++++. +.+++||+-+|. .+..
T Consensus       162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~-----iasAgG-n~vkVWDl~~G~qll~~  233 (487)
T KOG0310|consen  162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALPSGSL-----IASAGG-NSVKVWDLTTGGQLLTS  233 (487)
T ss_pred             ccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcCCCCE-----EEEcCC-CeEEEEEecCCceehhh
Confidence            994 568899999999999999976 5555554  5668999999999997     455554 479999998655 4444


Q ss_pred             eeccCcCeeEEEEeeCCCEEe
Q 024868          240 KRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +..|...|+|+.+..+++.|+
T Consensus       234 ~~~H~KtVTcL~l~s~~~rLl  254 (487)
T KOG0310|consen  234 MFNHNKTVTCLRLASDSTRLL  254 (487)
T ss_pred             hhcccceEEEEEeecCCceEe
Confidence            455889999999999988775

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=9.2e-26  Score=156.25  Aligned_cols=242  Identities=15%  Similarity=0.207  Sum_probs=185.6

Q ss_pred             CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcC----CC-CceecCC--eEEeeecCCCCCceEEEECCC
Q 024868            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP----KT-TSVYTSP--LVTYVFDESEGDPMTIAVNPS   74 (261)
Q Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~~-~~~~~~~--~~~~~~~~~~~~v~~~~~~~~   74 (261)
                      +.+..|..++|+|.   ..+.++|+....      ++|..|-.    .. .+....|  ......+.|.+.|+|.+|+|+
T Consensus        30 ~dsqairav~fhp~---g~lyavgsnskt------~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPA---GGLYAVGSNSKT------FRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             cchhheeeEEecCC---CceEEeccCCce------EEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            55678999999995   568888876652      25555532    11 1111122  223445678999999999999


Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC----CcEEEEec-cCCeEEEEEccCceEEee
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGG-VDGHLRIMHWPSLRIILD  149 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~-~d~~i~~~d~~~~~~~~~  149 (261)
                      |+.+++|+.|.+|++..++...+  ..........-|.+.|..++|-.+    +..|++++ .|-.|++-|..+++....
T Consensus       101 geliatgsndk~ik~l~fn~dt~--~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTC--NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             cCeEEecCCCceEEEEecccccc--cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence            99999999999999987765442  112223334456789999999653    45677765 566788888888988888


Q ss_pred             ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC------CCceEEEEEecCCCcceEEEEEeeCCC
Q 024868          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------DEKIELCRFSKDGTKPFLFCTVQRGDK  223 (261)
Q Consensus       150 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~~~~~~~~~~~d  223 (261)
                      +.+|.+.|.++ ++-+|-++++|+.|.+|++||++-..++.++....      ...|.+++..|.|+.     ++++..|
T Consensus       179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-----l~sg~~d  252 (350)
T KOG0641|consen  179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-----LASGHAD  252 (350)
T ss_pred             ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-----eeeccCC
Confidence            88888888776 34468899999999999999999888887764321      235899999999998     7999999


Q ss_pred             cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ....+||++.++.++.+..|...|.++.|||..-||.
T Consensus       253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yll  289 (350)
T KOG0641|consen  253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLL  289 (350)
T ss_pred             CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEE
Confidence            9999999999999999999999999999999888875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.5e-27  Score=189.98  Aligned_cols=225  Identities=15%  Similarity=0.157  Sum_probs=174.8

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEecCCc
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGG   86 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~   86 (261)
                      ..++|..-  ..++||++...|        .|-.||.....-   ......+..|+..++++.|++ ...+|++|+.||.
T Consensus        91 ~DVkW~~~--~~NlIAT~s~nG--------~i~vWdlnk~~r---nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~  157 (839)
T KOG0269|consen   91 ADVKWGQL--YSNLIATCSTNG--------VISVWDLNKSIR---NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT  157 (839)
T ss_pred             hhcccccc--hhhhheeecCCC--------cEEEEecCcccc---chhhhHhhhhccceeeeeeccCCccEEEecCCCce
Confidence            34567632  478999999888        777777765210   011347889999999999998 5678899999999


Q ss_pred             EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEEEcC
Q 024868           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~  164 (261)
                      |+.||++.....       .......+.|++++|+| .+.+|+++...|.+.+||++.... ..++..|.++|.++.|+|
T Consensus       158 vK~~DlR~~~S~-------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP  230 (839)
T KOG0269|consen  158 VKCWDLRSKKSK-------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP  230 (839)
T ss_pred             EEEEeeeccccc-------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC
Confidence            999999887641       22223457899999999 678899999999999999987654 345667888999999999


Q ss_pred             CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeeecc
Q 024868          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLL  243 (261)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~  243 (261)
                      ++.+||+|+.|+.|+|||+.+.+.......+...++.++.|-|+.++.+.  ..+-..|-.|+|||++..- +...+..|
T Consensus       231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA--tcsmv~dtsV~VWDvrRPYIP~~t~~eH  308 (839)
T KOG0269|consen  231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA--TCSMVVDTSVHVWDVRRPYIPYATFLEH  308 (839)
T ss_pred             CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh--hhhccccceEEEEeeccccccceeeecc
Confidence            99999999999999999998776655555556778999999999987532  2233467789999998654 33456678


Q ss_pred             CcCeeEEEEee
Q 024868          244 RKPASVLSISL  254 (261)
Q Consensus       244 ~~~v~~~~~s~  254 (261)
                      ...++.++|..
T Consensus       309 ~~~vt~i~W~~  319 (839)
T KOG0269|consen  309 TDSVTGIAWDS  319 (839)
T ss_pred             CccccceeccC
Confidence            78888888865

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.3e-27  Score=162.94  Aligned_cols=187  Identities=18%  Similarity=0.232  Sum_probs=161.8

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      ...+..+.++|..+.|+-+|++.++++.|.++++|+...+..        +... .|...|..++.+.|+..|++++.|.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--------iktYsghG~EVlD~~~s~Dnskf~s~GgDk   81 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--------IKTYSGHGHEVLDAALSSDNSKFASCGGDK   81 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce--------eeeecCCCceeeeccccccccccccCCCCc
Confidence            456788999999999999999999999999999999987765        3333 3456899999999999999999999


Q ss_pred             eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC--CcEEEEEeecCCCceEEEEEecCCCcc
Q 024868          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      .+.+||+.+++..+++.+|...|..++|+.+...+++|+.|.++++||.++  .++++.+....+ .|.++..+.  .. 
T Consensus        82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~~--he-  157 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVAE--HE-  157 (307)
T ss_pred             eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEecc--cE-
Confidence            999999999999999999999999999999999999999999999999985  567777776655 488887653  33 


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                          +++|+.||+++.||++.|+..  ....+.+|+++.|++||+.+.
T Consensus       158 ----IvaGS~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~L  199 (307)
T KOG0316|consen  158 ----IVAGSVDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSL  199 (307)
T ss_pred             ----EEeeccCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEE
Confidence                689999999999999999865  344567999999999998654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=4.8e-28  Score=177.05  Aligned_cols=213  Identities=12%  Similarity=0.200  Sum_probs=160.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .|.|.|+.|...     ++++|++|.        .+.+||.++++.      ...+-+|...|..+.|+  ..++++++.
T Consensus       237 tGSVLCLqyd~r-----viisGSSDs--------TvrvWDv~tge~------l~tlihHceaVLhlrf~--ng~mvtcSk  295 (499)
T KOG0281|consen  237 TGSVLCLQYDER-----VIVSGSSDS--------TVRVWDVNTGEP------LNTLIHHCEAVLHLRFS--NGYMVTCSK  295 (499)
T ss_pred             CCcEEeeeccce-----EEEecCCCc--------eEEEEeccCCch------hhHHhhhcceeEEEEEe--CCEEEEecC
Confidence            567777777553     777777777        677777766664      34566677777777775  346777777


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |.++.+||+...... .   .......|...|+.+.|+  .++|++++.|++|++|++.+++.+..+.+|...|-|+.+ 
T Consensus       296 DrsiaVWdm~sps~i-t---~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-  368 (499)
T KOG0281|consen  296 DRSIAVWDMASPTDI-T---LRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-  368 (499)
T ss_pred             CceeEEEeccCchHH-H---HHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc-
Confidence            777888877655420 0   011223456788888886  569999999999999999999999888888888888876 


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE------
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI------  237 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~------  237 (261)
                       .|+++++|+.|.+|++||+..|.+++.+++|.+ -|+++.|.  .+.     +++|+.||+|++||+..+...      
T Consensus       369 -r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvRciRFd--~kr-----IVSGaYDGkikvWdl~aaldpra~~~~  439 (499)
T KOG0281|consen  369 -RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFD--NKR-----IVSGAYDGKIKVWDLQAALDPRAPAST  439 (499)
T ss_pred             -cCeEEEecCCCceEEEEeccccHHHHHHhchHH-hhhheeec--Cce-----eeeccccceEEEEecccccCCcccccc
Confidence             599999999999999999999999999999877 49999995  455     699999999999999765422      


Q ss_pred             ---eeeeccCcCeeEEEEe
Q 024868          238 ---GHKRLLRKPASVLSIS  253 (261)
Q Consensus       238 ---~~~~~~~~~v~~~~~s  253 (261)
                         .+...|.+.|..+.|.
T Consensus       440 ~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  440 LCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             hHHHhhhhccceeEEEeec
Confidence               2333455566666653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=3.7e-28  Score=177.65  Aligned_cols=212  Identities=13%  Similarity=0.175  Sum_probs=177.1

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .+-.|||+.+...     .+++|..|+        .|..||.++..+      ...+.+|++.|.|+.|  +.+.+++|+
T Consensus       196 ~skgVYClQYDD~-----kiVSGlrDn--------TikiWD~n~~~c------~~~L~GHtGSVLCLqy--d~rviisGS  254 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE-----KIVSGLRDN--------TIKIWDKNSLEC------LKILTGHTGSVLCLQY--DERVIVSGS  254 (499)
T ss_pred             cCCceEEEEecch-----hhhcccccC--------ceEEeccccHHH------HHhhhcCCCcEEeeec--cceEEEecC
Confidence            4567999988643     789999998        888899887765      5678999999999999  456899999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE---eeccccCCceeE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLD  159 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~v~~  159 (261)
                      .|.+|++||.+++++.       ...+.|-+.|..+.|+  ..++++++.|.++.+||+.....+   ..+.+|...|..
T Consensus       255 SDsTvrvWDv~tge~l-------~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv  325 (499)
T KOG0281|consen  255 SDSTVRVWDVNTGEPL-------NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  325 (499)
T ss_pred             CCceEEEEeccCCchh-------hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence            9999999999999862       2234556889999997  458999999999999999765432   233466678999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      +.|+  .+++++++.|.+|++|++.+++.++++.+|..+ |.++.+  .|+.     +++|+.|.+|++||++.|.++..
T Consensus       326 Vdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG-IAClQY--r~rl-----vVSGSSDntIRlwdi~~G~cLRv  395 (499)
T KOG0281|consen  326 VDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG-IACLQY--RDRL-----VVSGSSDNTIRLWDIECGACLRV  395 (499)
T ss_pred             eccc--cceEEEecCCceEEEEeccceeeehhhhccccc-ceehhc--cCeE-----EEecCCCceEEEEeccccHHHHH
Confidence            9986  669999999999999999999999999988774 877765  5676     79999999999999999999988


Q ss_pred             eeccCcCeeEEEEee
Q 024868          240 KRLLRKPASVLSISL  254 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~  254 (261)
                      +.+|+.-|.++.|..
T Consensus       396 LeGHEeLvRciRFd~  410 (499)
T KOG0281|consen  396 LEGHEELVRCIRFDN  410 (499)
T ss_pred             HhchHHhhhheeecC
Confidence            999998898888854

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=5.8e-26  Score=163.27  Aligned_cols=225  Identities=13%  Similarity=0.172  Sum_probs=182.0

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .+.|+.+++|.+    ...+++|+.++        .|..+|..++.       ...+..|...+.++.+++....+++|+
T Consensus        53 ~~~plL~c~F~d----~~~~~~G~~dg--------~vr~~Dln~~~-------~~~igth~~~i~ci~~~~~~~~vIsgs  113 (323)
T KOG1036|consen   53 HGAPLLDCAFAD----ESTIVTGGLDG--------QVRRYDLNTGN-------EDQIGTHDEGIRCIEYSYEVGCVISGS  113 (323)
T ss_pred             cCCceeeeeccC----CceEEEeccCc--------eEEEEEecCCc-------ceeeccCCCceEEEEeeccCCeEEEcc
Confidence            478999999988    45789999999        99999998877       556788999999999999888899999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc--CCceeEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDM  160 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~  160 (261)
                      .|++|++||.+....        ...+...+.|.++..+  +..|++|+.+..+.+||+++..........  +-.++++
T Consensus       114 WD~~ik~wD~R~~~~--------~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v  183 (323)
T KOG1036|consen  114 WDKTIKFWDPRNKVV--------VGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV  183 (323)
T ss_pred             cCccEEEEecccccc--------ccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE
Confidence            999999999986432        2333334578877665  778999999999999999987764422222  2268999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccCC----cEEEEEeecC--------CCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTEDG----VAWTFLTRNS--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~--------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                      ++-|++.-++.++-||.|.+=.++..    +....++.|.        ..||++++|+|-...     +++|+.||.|.+
T Consensus       184 ~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t-----faTgGsDG~V~~  258 (323)
T KOG1036|consen  184 ALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT-----FATGGSDGIVNI  258 (323)
T ss_pred             EEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce-----EEecCCCceEEE
Confidence            99998888999999999988766654    2333444432        237999999998776     699999999999


Q ss_pred             EECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ||+.+.+.+..+...+..|.+++|+.||..||+
T Consensus       259 Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAi  291 (323)
T KOG1036|consen  259 WDLFNRKRLKQLAKYETSISSLSFSMDGSLLAI  291 (323)
T ss_pred             ccCcchhhhhhccCCCCceEEEEeccCCCeEEE
Confidence            999999988888877788999999999999985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=5.4e-27  Score=179.27  Aligned_cols=242  Identities=18%  Similarity=0.203  Sum_probs=172.9

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      +.-.|..+++.|.   +..+++|+-|-        .+..||..+....... .....+.....|.++.|++.|..|++.+
T Consensus       166 gtk~Vsal~~Dp~---GaR~~sGs~Dy--------~v~~wDf~gMdas~~~-fr~l~P~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  166 GTKIVSALAVDPS---GARFVSGSLDY--------TVKFWDFQGMDASMRS-FRQLQPCETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             CceEEEEeeecCC---Cceeeeccccc--------eEEEEecccccccchh-hhccCcccccccceeeecCCCCeEEEEe
Confidence            3456888888885   56788998887        6667776554332222 2334445566899999999999998888


Q ss_pred             cCCcEEEEEEeCCccccc-----eeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeeccccC--
Q 024868           83 TNGGCKLFEVYGGATDIN-----LLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAH--  154 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--  154 (261)
                      .....+++|-.......-     .+.....+-.|...+++.+|+|+. ..+++++.||++++||+.+.+.......+.  
T Consensus       234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence            888899999876543111     111112333456788999999965 578899999999999998655433332221  


Q ss_pred             ----CceeEEEEcCCCCEEEEecCCCcEEEEEccCCc--EEEEEe-ecCC-CceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868          155 ----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--AWTFLT-RNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       155 ----~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~d~~i  226 (261)
                          -++..++|+|||++||+|+.||+|++|+.....  +...+. .|.. ..|+++.||+||++     +++.+.|+++
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-----LlSRg~D~tL  388 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-----LLSRGFDDTL  388 (641)
T ss_pred             CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-----hhhccCCCce
Confidence                268999999999999999999999999975432  222222 3332 25999999999999     7999999999


Q ss_pred             EEEECCCCeE-EeeeeccC--cCeeEEEEeeCCCEEeC
Q 024868          227 AVYDISTWNK-IGHKRLLR--KPASVLSISLDGKYLAM  261 (261)
Q Consensus       227 ~~~d~~~~~~-~~~~~~~~--~~v~~~~~s~dg~~la~  261 (261)
                      ++||++..+. +....+..  .+-+.++||||.+.|++
T Consensus       389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~T  426 (641)
T KOG0772|consen  389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILT  426 (641)
T ss_pred             eeeeccccccchhhhcCCCccCCCCccccCCCceEEEe
Confidence            9999997653 43333332  45678999999998864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.8e-26  Score=178.64  Aligned_cols=220  Identities=15%  Similarity=0.191  Sum_probs=176.9

Q ss_pred             EEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEE
Q 024868           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL   89 (261)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   89 (261)
                      ++|+.    .+++++|-+.         .+|.|+..++.+      ......+.+.|+++.|+++|..|++|..+|.|.|
T Consensus       183 ldWss----~n~laValg~---------~vylW~~~s~~v------~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~i  243 (484)
T KOG0305|consen  183 LDWSS----ANVLAVALGQ---------SVYLWSASSGSV------TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQI  243 (484)
T ss_pred             hhccc----CCeEEEEecc---------eEEEEecCCCce------EEeEecCCCceEEEEECCCCCEEEEeecCCeEEE
Confidence            35654    4567766442         589999888774      3333334789999999999999999999999999


Q ss_pred             EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEcCCCCE
Q 024868           90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDSEF  168 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~  168 (261)
                      ||....+.....      ...|...|.+++|+  +..+.+|+.++.|..+|++..+.... +..|...|..+.|++|+++
T Consensus       244 wD~~~~k~~~~~------~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~  315 (484)
T KOG0305|consen  244 WDVKEQKKTRTL------RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ  315 (484)
T ss_pred             Eehhhccccccc------cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe
Confidence            999877652211      11257899999998  67889999999999999998877665 5556678999999999999


Q ss_pred             EEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCee
Q 024868          169 LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS  248 (261)
Q Consensus       169 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~  248 (261)
                      +|+|+.|+.+.|||....++...+..|.. .|..++|+|-..-++  +...|+.|++|++||..+++.+.... -...|+
T Consensus       316 lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~awcP~q~~lL--AsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVc  391 (484)
T KOG0305|consen  316 LASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAWCPWQSGLL--ATGGGSADRCIKFWNTNTGARIDSVD-TGSQVC  391 (484)
T ss_pred             eccCCCccceEeccCCCccccEEEeccce-eeeEeeeCCCccCce--EEcCCCcccEEEEEEcCCCcEecccc-cCCcee
Confidence            99999999999999988888888888876 599999999877632  13445679999999999999886443 557899


Q ss_pred             EEEEeeCCCEEe
Q 024868          249 VLSISLDGKYLA  260 (261)
Q Consensus       249 ~~~~s~dg~~la  260 (261)
                      ++.|++..+-|+
T Consensus       392 sL~Wsk~~kEi~  403 (484)
T KOG0305|consen  392 SLIWSKKYKELL  403 (484)
T ss_pred             eEEEcCCCCEEE
Confidence            999999987665

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=4.8e-27  Score=164.57  Aligned_cols=203  Identities=14%  Similarity=0.173  Sum_probs=167.7

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .+.-|..++|+.+   .+.+++|+.+.        .+.+||.+..+-     ....+.+|++.|..+-|....+.+++++
T Consensus        99 hkhivk~~af~~d---s~~lltgg~ek--------llrvfdln~p~A-----pp~E~~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen   99 HKHIVKAVAFSQD---SNYLLTGGQEK--------LLRVFDLNRPKA-----PPKEISGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             hhheeeeEEeccc---chhhhccchHH--------HhhhhhccCCCC-----CchhhcCCCCcceeEEEeccCceEEeec
Confidence            4566889999986   56888898877        667777765442     2446889999999999999888899889


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .|++|++||..++..        .+.+.-..+|+++.++++|++|.++ ..+.|.+||..+.+.+... .....|.+.++
T Consensus       163 dd~tVRLWD~rTgt~--------v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~-k~P~nV~SASL  232 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTE--------VQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSY-KMPCNVESASL  232 (334)
T ss_pred             cCCceEEEEeccCcE--------EEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeec-cCccccccccc
Confidence            999999999999875        3344446789999999999988777 6678999999888776543 34557899999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      +|+...+++|+.|..++.||..+|+.+..+...+.++|.++.|+|+|..     .++|++||+|++|.+..++.
T Consensus       233 ~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~-----yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  233 HPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL-----YASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce-----eeccCCCceEEEEEecCCCc
Confidence            9999999999999999999999999988863334448999999999997     59999999999999876654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=5.8e-26  Score=186.99  Aligned_cols=241  Identities=18%  Similarity=0.167  Sum_probs=183.4

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCC--CCcee--------cCCeEEeeecCCCCCceEEEEC
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK--TTSVY--------TSPLVTYVFDESEGDPMTIAVN   72 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~--------~~~~~~~~~~~~~~~v~~~~~~   72 (261)
                      ..++|.|+.|+|+   ..++|+|+.|+.+      .||.++..  ...+.        ..-.....+.+|...|..++|+
T Consensus        68 h~~sv~CVR~S~d---G~~lAsGSDD~~v------~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   68 HDGSVNCVRFSPD---GSYLASGSDDRLV------MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             ccCceeEEEECCC---CCeEeeccCcceE------EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            3589999999996   6799999999822      45555520  11110        0112456788999999999999


Q ss_pred             CCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc
Q 024868           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (261)
Q Consensus        73 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  152 (261)
                      |++.+|++++.|++|.+|+..+... .      .....|.+.|..+.|.|-|++||+-+.|++|++|.+.+-.....+.+
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF~~-~------~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~  211 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTFEL-L------KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITK  211 (942)
T ss_pred             CCccEEEEecccceEEEEcccccee-e------eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeecc
Confidence            9999999999999999999998853 1      22234578899999999999999999999999999776544444433


Q ss_pred             cC------CceeEEEEcCCCCEEEEecC----CCcEEEEEccCCcEEEEEeecCCCceEEEEEecC--------CC---c
Q 024868          153 AH------KSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD--------GT---K  211 (261)
Q Consensus       153 ~~------~~v~~~~~s~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~--------~~---~  211 (261)
                      +.      ..+..+.|||||++|++...    -..+.|.+-.+.+.-..+-+|.. ++.+++|+|.        |.   .
T Consensus       212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~  290 (942)
T KOG0973|consen  212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQP  290 (942)
T ss_pred             chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCC
Confidence            22      24789999999999998643    24688998888887788888877 7999999982        11   1


Q ss_pred             -ceEEEEEeeCCCcEEEEEECCCCeEEeeee-ccCcCeeEEEEeeCCCEEe
Q 024868          212 -PFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       212 -~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~dg~~la  260 (261)
                       .+..++++|+.|++|.||.....+++.... .....|.+++|+|||..|.
T Consensus       291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lf  341 (942)
T KOG0973|consen  291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLF  341 (942)
T ss_pred             CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEE
Confidence             122347899999999999998877764332 3457899999999998664

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.3e-27  Score=173.82  Aligned_cols=209  Identities=14%  Similarity=0.196  Sum_probs=165.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCCCceEEEECCCCCeEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      ...||.-+.|+|+   .+++++++.+.        .++.||..++.+      ...++ +|...+.+.+|.|||..+++|
T Consensus       268 h~~~V~yi~wSPD---dryLlaCg~~e--------~~~lwDv~tgd~------~~~y~~~~~~S~~sc~W~pDg~~~V~G  330 (519)
T KOG0293|consen  268 HSQPVSYIMWSPD---DRYLLACGFDE--------VLSLWDVDTGDL------RHLYPSGLGFSVSSCAWCPDGFRFVTG  330 (519)
T ss_pred             ccCceEEEEECCC---CCeEEecCchH--------heeeccCCcchh------hhhcccCcCCCcceeEEccCCceeEec
Confidence            3679999999997   56677776777        688999988875      22222 245789999999999999999


Q ss_pred             ecCCcEEEEEEeCCccc-------cc-----------------------eee----eeCCCCCCCCCeEEEEEeeCCcEE
Q 024868           82 TTNGGCKLFEVYGGATD-------IN-----------------------LLA----KKMPPLQDAGPQKCLSFSVDGSRF  127 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~-------~~-----------------------~~~----~~~~~~~~~~~v~~~~~s~~~~~l  127 (261)
                      +.|+++..||++.....       .+                       ...    ..........+|+++..|.|++++
T Consensus       331 s~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~  410 (519)
T KOG0293|consen  331 SPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLA  410 (519)
T ss_pred             CCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEE
Confidence            99999999999765320       00                       000    001122335688999999999999


Q ss_pred             EEeccCCeEEEEEccCceEEeeccccCCc--eeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEE
Q 024868          128 AAGGVDGHLRIMHWPSLRIILDEPKAHKS--VLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR  204 (261)
Q Consensus       128 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  204 (261)
                      ++--.+..+++||++....+.++.+|...  +..-+|-- +..++++|+.|+.|+||+..+|+++.++.+|.. .|++++
T Consensus       411 LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-~vNcVs  489 (519)
T KOG0293|consen  411 LVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-TVNCVS  489 (519)
T ss_pred             EEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-eeeEEe
Confidence            99889999999999988887788877753  55555654 558999999999999999999999999999887 599999


Q ss_pred             EecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          205 FSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       205 ~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      |+|.....    ++++++||+|+||-...
T Consensus       490 wNP~~p~m----~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  490 WNPADPEM----FASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCHHH----hhccCCCCeEEEecCCc
Confidence            99998874    59999999999998764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.8e-26  Score=180.76  Aligned_cols=227  Identities=12%  Similarity=0.159  Sum_probs=183.8

Q ss_pred             eCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeC
Q 024868           15 RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG   94 (261)
Q Consensus        15 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~   94 (261)
                      +....+++.+||.||        .|..|+.....-..+......++.|.+.|..++...+++.|++++.|-+|++|+...
T Consensus        33 da~~~ryLfTgGRDg--------~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~  104 (735)
T KOG0308|consen   33 DAPNGRYLFTGGRDG--------IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK  104 (735)
T ss_pred             cCCCCceEEecCCCc--------eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc
Confidence            334566899999999        666665533221111112456889999999999999999999999999999999976


Q ss_pred             CccccceeeeeCCCCCCCCCeEEEEE-eeCCcEEEEeccCCeEEEEEccCceE--E--------eecc-ccCCceeEEEE
Q 024868           95 GATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDGHLRIMHWPSLRI--I--------LDEP-KAHKSVLDMDF  162 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~i~~~d~~~~~~--~--------~~~~-~~~~~v~~~~~  162 (261)
                      .....     ....-.|...|.+++. .++..++|+|+-|+.|.+||++++..  +        .... ++...|++++.
T Consensus       105 ~~~~c-----~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~  179 (735)
T KOG0308|consen  105 DNTFC-----MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM  179 (735)
T ss_pred             Ccchh-----HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence            63100     0122346789999999 78889999999999999999987632  1        1222 45568999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      ++.|..+++|+..+.+++||.++++.+..+.+|.+ .|+.+..++||+.     +++++.||+|++||+...+++.++..
T Consensus       180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~-----~ls~sSDgtIrlWdLgqQrCl~T~~v  253 (735)
T KOG0308|consen  180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTR-----LLSASSDGTIRLWDLGQQRCLATYIV  253 (735)
T ss_pred             CCcceEEEecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCe-----EeecCCCceEEeeeccccceeeeEEe
Confidence            99999999999999999999999999999998877 5999999999999     79999999999999999999999999


Q ss_pred             cCcCeeEEEEeeCCCEEe
Q 024868          243 LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la  260 (261)
                      |...|+++..+|+=+++.
T Consensus       254 H~e~VWaL~~~~sf~~vY  271 (735)
T KOG0308|consen  254 HKEGVWALQSSPSFTHVY  271 (735)
T ss_pred             ccCceEEEeeCCCcceEE
Confidence            999999999988766553

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=4.1e-28  Score=176.09  Aligned_cols=187  Identities=18%  Similarity=0.244  Sum_probs=157.9

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeee-eCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d  140 (261)
                      ....+.|..|+|||++|++|+.||.|-+|+..+++....+... ....+-+..+|.|+.||.|...+++|+.||.|++|.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            3456889999999999999999999999999988754332211 122334568999999999999999999999999999


Q ss_pred             ccCceEEeecc-ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868          141 WPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       141 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  219 (261)
                      +++|.+++++. .|...|+++.||.|+..+++++.|.+++|.-+++|++++.+.+|.. .|+.+.|.+||.+     +++
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~-----iis  365 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHH-----IIS  365 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCe-----EEE
Confidence            99999988877 4556899999999999999999999999999999999999999877 4999999999999     799


Q ss_pred             eCCCcEEEEEECCCCeEEeeeeccC--cCeeEEEEee
Q 024868          220 RGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISL  254 (261)
Q Consensus       220 ~~~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~  254 (261)
                      ++.||+|++|+.++.+++.++...+  .+|.++..-|
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~P  402 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLP  402 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcC
Confidence            9999999999999998877665443  3455554444

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=1.2e-25  Score=164.97  Aligned_cols=189  Identities=16%  Similarity=0.251  Sum_probs=160.1

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  135 (261)
                      ...+..|++.|.+++.+|+.+++++|+.|...++|++.++...       .....|+..|.++.||.||.+||+|+.+|.
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-------~eltgHKDSVt~~~FshdgtlLATGdmsG~  129 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-------GELTGHKDSVTCCSFSHDGTLLATGDMSGK  129 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-------eEecCCCCceEEEEEccCceEEEecCCCcc
Confidence            4568899999999999999999999999999999999988741       233456789999999999999999999999


Q ss_pred             EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      |++|+..++.....+...-..+.-+.|+|-+..|++|+.||.+.+|.+.++...+.+.+|.. ++++-.|.|+|+.    
T Consensus       130 v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr----  204 (399)
T KOG0296|consen  130 VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKR----  204 (399)
T ss_pred             EEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-CcccccccCCCce----
Confidence            99999999988777765556788899999999999999999999999999877888887654 7999999999999    


Q ss_pred             EEEeeCCCcEEEEEECCCCeEEeeeecc-CcCeeEEEEeeCCC
Q 024868          216 CTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGK  257 (261)
Q Consensus       216 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~dg~  257 (261)
                       ++++..||+|++||..+++++..+... .....++.++.++.
T Consensus       205 -~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~  246 (399)
T KOG0296|consen  205 -ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS  246 (399)
T ss_pred             -EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc
Confidence             789999999999999999988666522 23344455544443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=2.2e-26  Score=176.02  Aligned_cols=236  Identities=15%  Similarity=0.188  Sum_probs=171.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecC------CeEEeeecCCCCCceEEEECCCC-C
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS------PLVTYVFDESEGDPMTIAVNPSG-D   76 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~-~   76 (261)
                      ..+|.+++|++..+ .-++++|..          +...+|.++..+..-      .......++|...+++.+|+|+. +
T Consensus       214 ~h~i~sl~ys~Tg~-~iLvvsg~a----------qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~  282 (641)
T KOG0772|consen  214 THQINSLQYSVTGD-QILVVSGSA----------QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE  282 (641)
T ss_pred             ccccceeeecCCCC-eEEEEecCc----------ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc
Confidence            46789999999642 333344444          556666665443211      12234678899999999999954 5


Q ss_pred             eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--E-eecccc
Q 024868           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--I-LDEPKA  153 (261)
Q Consensus        77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~-~~~~~~  153 (261)
                      .+++++.||++++|++...+...+.+... ..-...-++..++|+|||++||+|..||.|.+|+......  . .....|
T Consensus       283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k-~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH  361 (641)
T KOG0772|consen  283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTK-PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH  361 (641)
T ss_pred             ceEEecCCCcEEEEecCCchhheeEEeec-cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc
Confidence            68899999999999998776544333221 1122346789999999999999999999999999754321  1 122334


Q ss_pred             CC--ceeEEEEcCCCCEEEEecCCCcEEEEEccCCc-EEEEEeec-CCCceEEEEEecCCCcceEEEEEee------CCC
Q 024868          154 HK--SVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQR------GDK  223 (261)
Q Consensus       154 ~~--~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~------~~d  223 (261)
                      ..  .|+++.||+||++|++-+.|+++++||+++.+ ++.+..+- ...+-+.++|||+.+.     +++|      ...
T Consensus       362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kl-----i~TGtS~~~~~~~  436 (641)
T KOG0772|consen  362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKL-----ILTGTSAPNGMTA  436 (641)
T ss_pred             CCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceE-----EEecccccCCCCC
Confidence            44  79999999999999999999999999999754 44444321 2234678999999997     3443      345


Q ss_pred             cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDG  256 (261)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg  256 (261)
                      |++.+||..+.+.+..+......|..+.|+|-=
T Consensus       437 g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL  469 (641)
T KOG0772|consen  437 GTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL  469 (641)
T ss_pred             ceEEEEeccceeeEEEecCCCceEEEEeecchh
Confidence            789999999999888888888899999999953

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.7e-26  Score=183.59  Aligned_cols=192  Identities=17%  Similarity=0.202  Sum_probs=151.3

Q ss_pred             Eeeec-CCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc---------------------------c---------
Q 024868           56 TYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---------------------------D---------   98 (261)
Q Consensus        56 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~---------------------------~---------   98 (261)
                      .+.+. .|.+.|.++.|++||++||+|+.|+.|+||.+.....                           .         
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34556 8999999999999999999999999999999976110                           0         


Q ss_pred             --------ccee--------eee-CCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           99 --------INLL--------AKK-MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        99 --------~~~~--------~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                              ...+        ..+ .....|.+.|.++.||.++ +|++++.|.+|+||++...+++ ..+.|...|+|++
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL-~~F~HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL-KVFSHNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCccee-eEEecCCeeEEEE
Confidence                    0000        000 1122356789999999755 8889999999999999877775 5678999999999


Q ss_pred             EcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       162 ~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      |+| |.+|+++|+-|+.++||++...+.+.-...+ . -|++++|.|||++     ++.|+.+|.+++|+++..+.....
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~-lITAvcy~PdGk~-----avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-D-LITAVCYSPDGKG-----AVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehhhh-h-hheeEEeccCCce-----EEEEEeccEEEEEEccCCeEEEee
Confidence            999 8999999999999999999887766554433 3 5999999999998     788999999999999877765333


Q ss_pred             ec--c------CcCeeEEEEeeCC
Q 024868          241 RL--L------RKPASVLSISLDG  256 (261)
Q Consensus       241 ~~--~------~~~v~~~~~s~dg  256 (261)
                      ..  +      ...|+.++|.|..
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~  513 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGD  513 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCC
Confidence            21  1      2369999998754

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.2e-27  Score=187.87  Aligned_cols=215  Identities=14%  Similarity=0.180  Sum_probs=180.3

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~   98 (261)
                      ...++.||.+.        ++-.|......      ....+.+|..+|.++.|+++...|++|+.+|+|++||++..+..
T Consensus        40 ~r~~~~Gg~~~--------k~~L~~i~kp~------~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v  105 (825)
T KOG0267|consen   40 SRSLVTGGEDE--------KVNLWAIGKPN------AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV  105 (825)
T ss_pred             ceeeccCCCce--------eeccccccCCc------hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence            35666776666        44333332221      13348899999999999999999999999999999999977642


Q ss_pred             cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcE
Q 024868           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA  178 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  178 (261)
                      .       ....|...+..+.|+|-+.+++.++.|+.+.+||++...+...+..|...+..+.|+|+|++++.+++|..+
T Consensus       106 r-------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv  178 (825)
T KOG0267|consen  106 R-------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV  178 (825)
T ss_pred             h-------hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence            2       223456788899999999999999999999999999888877777777789999999999999999999999


Q ss_pred             EEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCE
Q 024868          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY  258 (261)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~  258 (261)
                      +|||+..|+....|..|.. .+..+.|+|..-.     ++.|+.|+++++||+++.+.+.........|.+.+|+|+|+.
T Consensus       179 ki~d~~agk~~~ef~~~e~-~v~sle~hp~e~L-----la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~  252 (825)
T KOG0267|consen  179 KIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVL-----LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKI  252 (825)
T ss_pred             eeecccccccccccccccc-cccccccCchhhh-----hccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCcee
Confidence            9999999999999998776 5999999998776     799999999999999998888776666789999999999987


Q ss_pred             Ee
Q 024868          259 LA  260 (261)
Q Consensus       259 la  260 (261)
                      ++
T Consensus       253 ~~  254 (825)
T KOG0267|consen  253 VL  254 (825)
T ss_pred             ee
Confidence            65

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=5.6e-26  Score=159.96  Aligned_cols=193  Identities=16%  Similarity=0.173  Sum_probs=158.5

Q ss_pred             eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCe
Q 024868           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGH  135 (261)
Q Consensus        57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~  135 (261)
                      ..+++|...+.+++|+.+|..|++|+.|+++.+|+++..+..     .......|.+.|-.++|+| +...+++++.|.+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-----~~~~~~gh~~svdql~w~~~~~d~~atas~dk~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-----KELVYRGHTDSVDQLCWDPKHPDLFATASGDKT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-----hhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence            467789999999999999999999999999999999877431     1234445667889999998 5678999999999


Q ss_pred             EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE---------------------------
Q 024868          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---------------------------  188 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~---------------------------  188 (261)
                      |++||++++++........+. .-+.|+|+|++++.++.|..|.+.|.++.+.                           
T Consensus        89 ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G  167 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNG  167 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecC
Confidence            999999999987666544433 5578999999999999999998888764322                           


Q ss_pred             --------------EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          189 --------------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       189 --------------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                                    +..++.|. ....++.|+|+|++     +++|+.|..+.+||+...-++..+..+.-+|..++||.
T Consensus       168 lG~v~ILsypsLkpv~si~AH~-snCicI~f~p~Gry-----fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~  241 (313)
T KOG1407|consen  168 LGCVEILSYPSLKPVQSIKAHP-SNCICIEFDPDGRY-----FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH  241 (313)
T ss_pred             CceEEEEeccccccccccccCC-cceEEEEECCCCce-----EeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence                          22233333 24678999999999     79999999999999998777778888899999999999


Q ss_pred             CCCEEeC
Q 024868          255 DGKYLAM  261 (261)
Q Consensus       255 dg~~la~  261 (261)
                      ||++||+
T Consensus       242 dg~~lAS  248 (313)
T KOG1407|consen  242 DGRMLAS  248 (313)
T ss_pred             Ccceeec
Confidence            9999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=2.6e-27  Score=179.43  Aligned_cols=193  Identities=17%  Similarity=0.214  Sum_probs=164.6

Q ss_pred             EEeeecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC
Q 024868           55 VTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (261)
Q Consensus        55 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (261)
                      ..+.+.+|+..|+++.|.| .+.+|++++.|+.|+||++......      ......|..+|.+++|+++|..+++++.|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~------lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC------LRTFKGHRKPVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce------ehhhhcchhhhhhhhccccCCeeeeeecc
Confidence            3568899999999999999 8999999999999999999884321      13334567899999999999999999999


Q ss_pred             CeEEEEEccCceEEeeccccCCceeEEEEcCCC-CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      +.+++||+++|+....+. ....+.++.|+|++ +.+++|+.|+.|+.||+++++.++.+..|.+ .|..+.|-++|++ 
T Consensus       280 ~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~r-  356 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRR-  356 (503)
T ss_pred             eeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCce-
Confidence            999999999999876543 34578999999998 7889999999999999999999888887766 5999999999999 


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeeee-ccCcCeeEEEEeeCCCEEe
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~dg~~la  260 (261)
                          .+++++|+++++|+.+.+-.++... .......++..+|++++++
T Consensus       357 ----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~  401 (503)
T KOG0282|consen  357 ----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA  401 (503)
T ss_pred             ----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence                5889999999999999887765443 2335677899999999876

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5e-25  Score=166.20  Aligned_cols=224  Identities=13%  Similarity=0.085  Sum_probs=182.7

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+.|++.+++   ..++|+|+.+.        .+.+|+.++.+-      ...+++|.+.|.+++|-.....|++++.|
T Consensus       203 keil~~avS~D---gkylatgg~d~--------~v~Iw~~~t~eh------v~~~~ghr~~V~~L~fr~gt~~lys~s~D  265 (479)
T KOG0299|consen  203 KEILTLAVSSD---GKYLATGGRDR--------HVQIWDCDTLEH------VKVFKGHRGAVSSLAFRKGTSELYSASAD  265 (479)
T ss_pred             ceeEEEEEcCC---CcEEEecCCCc--------eEEEecCcccch------hhcccccccceeeeeeecCccceeeeecC
Confidence            46889999996   78999999999        888999888764      45689999999999999888889999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  164 (261)
                      +.+++|+++....       ....+.|...|.++.-..-++.+-+|+.|+++++|++..... ..+.++.+.+.|++|-.
T Consensus       266 rsvkvw~~~~~s~-------vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In  337 (479)
T KOG0299|consen  266 RSVKVWSIDQLSY-------VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIN  337 (479)
T ss_pred             CceEEEehhHhHH-------HHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEec
Confidence            9999999987653       133456778888888877788888888999999999954443 34556666899999974


Q ss_pred             CCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-----------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                       ...+++|++||.|.+|++.+.+++.+....++           .+|++++..|....     +++++.+|.|++|-+..
T Consensus       338 -~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL-----~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  338 -DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDL-----LASGSWSGCVRLWKIED  411 (479)
T ss_pred             -ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCce-----EEecCCCCceEEEEecC
Confidence             55799999999999999999998887654321           26889999998887     79999999999999988


Q ss_pred             C----eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          234 W----NKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       234 ~----~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +    +++..+. ..+.|++++|+++|++|+
T Consensus       412 g~r~i~~l~~ls-~~GfVNsl~f~~sgk~iv  441 (479)
T KOG0299|consen  412 GLRAINLLYSLS-LVGFVNSLAFSNSGKRIV  441 (479)
T ss_pred             Cccccceeeecc-cccEEEEEEEccCCCEEE
Confidence            7    2333333 558899999999999765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.5e-25  Score=167.19  Aligned_cols=232  Identities=17%  Similarity=0.214  Sum_probs=184.4

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-eEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~   81 (261)
                      ..++|+|+.|+|.   ..++.++|.++..      +|+..|......      .+.+.-..-+|.+..|.|+|. .++++
T Consensus       212 s~~~I~sv~FHp~---~plllvaG~d~~l------rifqvDGk~N~~------lqS~~l~~fPi~~a~f~p~G~~~i~~s  276 (514)
T KOG2055|consen  212 SHGGITSVQFHPT---APLLLVAGLDGTL------RIFQVDGKVNPK------LQSIHLEKFPIQKAEFAPNGHSVIFTS  276 (514)
T ss_pred             CcCCceEEEecCC---CceEEEecCCCcE------EEEEecCccChh------heeeeeccCccceeeecCCCceEEEec
Confidence            3578999999995   5688888888843      777777665543      223333356899999999999 88888


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCC--CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQD--AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  159 (261)
                      +....++.||+.+.+...      ......  ...+..+..||++++|+..+..|.|.+....+++.+..+ ...+.|..
T Consensus       277 ~rrky~ysyDle~ak~~k------~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~  349 (514)
T KOG2055|consen  277 GRRKYLYSYDLETAKVTK------LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSD  349 (514)
T ss_pred             ccceEEEEeecccccccc------ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEee
Confidence            899999999998876411      111111  235677889999999999999999999998888876543 45678999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC------
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST------  233 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~------  233 (261)
                      +.|+.|++.|++++.+|.|.+||+++..+++++.....-.-++++.++++.+     +++|++.|.|.|||..+      
T Consensus       350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y-----lA~GS~~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY-----LATGSDSGIVNIYDGNSCFASTN  424 (514)
T ss_pred             EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce-----EEeccCcceEEEeccchhhccCC
Confidence            9999999999999999999999999999999998655444567888899998     79999999999999653      


Q ss_pred             CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          234 WNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+++..+......|++++|+||++.||+
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~qiLAi  452 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQILAI  452 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchhhhhh
Confidence            4556666667789999999999999874

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.6e-25  Score=155.26  Aligned_cols=225  Identities=12%  Similarity=0.105  Sum_probs=168.4

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEEEecCCcEEEEEEeCCc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGA   96 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~   96 (261)
                      +..+|++++|+        .|.+|...+..   .......|.+|.++|..++|..  -|.+||+++.||+|.||.-.+++
T Consensus        23 gkrlATcsSD~--------tVkIf~v~~n~---~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~   91 (299)
T KOG1332|consen   23 GKRLATCSSDG--------TVKIFEVRNNG---QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR   91 (299)
T ss_pred             cceeeeecCCc--------cEEEEEEcCCC---CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc
Confidence            45788998888        55555443322   1233678999999999999954  79999999999999999998874


Q ss_pred             cccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCc-e--EEeeccccCCceeEEEEcCC---C--
Q 024868           97 TDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSL-R--IILDEPKAHKSVLDMDFSLD---S--  166 (261)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~-~--~~~~~~~~~~~v~~~~~s~~---~--  166 (261)
                      - .    +......|...|++++|.|.  |-.|++++.||.|.+.+.+.. .  .......|.-.|.+++|.|.   |  
T Consensus        92 w-~----k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   92 W-T----KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             h-h----hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            2 1    11233346789999999995  567889999999999998765 1  11223445568999999985   4  


Q ss_pred             ---------CEEEEecCCCcEEEEEccCCc--EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-
Q 024868          167 ---------EFLATTSTDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-  234 (261)
Q Consensus       167 ---------~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-  234 (261)
                               +.|++|+.|+.|+||+..+++  ...++..|.+ .|+.++|.|.-.. -..++++++.||++.||-.+.- 
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~  244 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEY  244 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCC-CceeeEEecCCCcEEEEEecCcc
Confidence                     579999999999999998764  3334666666 6999999998654 3445899999999999987632 


Q ss_pred             eE--EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          235 NK--IGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       235 ~~--~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ++  ...+......+..+.||..|+.||+
T Consensus       245 e~wk~tll~~f~~~~w~vSWS~sGn~LaV  273 (299)
T KOG1332|consen  245 EPWKKTLLEEFPDVVWRVSWSLSGNILAV  273 (299)
T ss_pred             CcccccccccCCcceEEEEEeccccEEEE
Confidence            11  1223345578999999999999985

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-23  Score=145.60  Aligned_cols=229  Identities=15%  Similarity=0.180  Sum_probs=173.0

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC----CCCeE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP----SGDDF   78 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l   78 (261)
                      ..|.|||.+|+|.   ..++++|+.+...      ++..|+.++.+...   ...++.-|.+.|..++|-.    .+..|
T Consensus        88 hkgsiyc~~ws~~---geliatgsndk~i------k~l~fn~dt~~~~g---~dle~nmhdgtirdl~fld~~~s~~~il  155 (350)
T KOG0641|consen   88 HKGSIYCTAWSPC---GELIATGSNDKTI------KVLPFNADTCNATG---HDLEFNMHDGTIRDLAFLDDPESGGAIL  155 (350)
T ss_pred             cCccEEEEEecCc---cCeEEecCCCceE------EEEecccccccccC---cceeeeecCCceeeeEEecCCCcCceEE
Confidence            4688999999996   5699999988844      88888887765422   2456788999999999953    24456


Q ss_pred             EEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc--c--
Q 024868           79 VCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--A--  153 (261)
Q Consensus        79 ~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~--  153 (261)
                      ++++. |.+|++-|...++.       ......|.+-|..+ ++-++-.+++|+.|.+|++||++-...+..+..  +  
T Consensus       156 ~s~gagdc~iy~tdc~~g~~-------~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~  227 (350)
T KOG0641|consen  156 ASAGAGDCKIYITDCGRGQG-------FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG  227 (350)
T ss_pred             EecCCCcceEEEeecCCCCc-------ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC
Confidence            65543 55666667666653       12223345666554 445688999999999999999987666544321  1  


Q ss_pred             ---CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868          154 ---HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       154 ---~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                         .+.|.+++..|.|++|++|-.|.+..+||++.++.++.+..|.. .|+++.|+|...+     +.+++.|..|++-|
T Consensus       228 glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~y-----llt~syd~~ikltd  301 (350)
T KOG0641|consen  228 GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHY-----LLTCSYDMKIKLTD  301 (350)
T ss_pred             CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceE-----EEEecccceEEEee
Confidence               13689999999999999999999999999999999999998766 5999999998887     79999999999999


Q ss_pred             CCCCe----EEeeeeccCcCeeEEEEeeCCC
Q 024868          231 ISTWN----KIGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       231 ~~~~~----~~~~~~~~~~~v~~~~~s~dg~  257 (261)
                      +...-    ++.....|...+..+.|+|..-
T Consensus       302 lqgdla~el~~~vv~ehkdk~i~~rwh~~d~  332 (350)
T KOG0641|consen  302 LQGDLAHELPIMVVAEHKDKAIQCRWHPQDF  332 (350)
T ss_pred             cccchhhcCceEEEEeccCceEEEEecCccc
Confidence            86421    2334456777888888988653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=8.1e-25  Score=154.69  Aligned_cols=191  Identities=14%  Similarity=0.204  Sum_probs=162.6

Q ss_pred             eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeE
Q 024868           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (261)
Q Consensus        57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  136 (261)
                      ..+++|..+++.+.++.+|.+|++++.|.+..+|-..+++.       .-....|.+.|.++..+.+.+.+++|+.|.++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------lGty~GHtGavW~~Did~~s~~liTGSAD~t~   76 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTA   76 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------eeeecCCCceEEEEEecCCcceeeecccccee
Confidence            45789999999999999999999999999999998877664       12234567999999999999999999999999


Q ss_pred             EEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-----CcEEEEEcc-------CCcEEEEEeecCCCceEEEE
Q 024868          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTE-------DGVAWTFLTRNSDEKIELCR  204 (261)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~  204 (261)
                      ++||+++|+.+... ....+|..+.|+++|++++...++     +.|.++|++       ..++...+..+.. .++.+-
T Consensus        77 kLWDv~tGk~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-kit~a~  154 (327)
T KOG0643|consen   77 KLWDVETGKQLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-KITSAL  154 (327)
T ss_pred             EEEEcCCCcEEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc-ceeeee
Confidence            99999999987554 456789999999999988877653     579999998       4556777776654 589999


Q ss_pred             EecCCCcceEEEEEeeCCCcEEEEEECCCCeE-EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       205 ~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      |.|-++.     ++++.+||.|..||+++|+. +.....|...|++++++||..++++
T Consensus       155 Wg~l~~~-----ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT  207 (327)
T KOG0643|consen  155 WGPLGET-----IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT  207 (327)
T ss_pred             ecccCCE-----EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe
Confidence            9999998     79999999999999999865 4555678899999999999998764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=3.6e-25  Score=166.59  Aligned_cols=205  Identities=14%  Similarity=0.216  Sum_probs=156.9

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECC-CCCeEEEEecCC
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNG   85 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg   85 (261)
                      +.++|++..  .-.+++|+.++        .+..||....... ........+.+|...|..++|++ +...+++++.|+
T Consensus       181 ~glsWn~~~--~g~Lls~~~d~--------~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  181 YGLSWNRQQ--EGTLLSGSDDH--------TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             ccccccccc--ceeEeeccCCC--------cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            557887753  55677888888        7777877654431 22334567899999999999999 456778889999


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEEEc
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s  163 (261)
                      .+.|||++....     ........|...+.|++|+| ++..||+|+.|++|.+||+++... +..+..|...|..+.||
T Consensus       251 ~L~iwD~R~~~~-----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS  325 (422)
T KOG0264|consen  251 KLMIWDTRSNTS-----KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS  325 (422)
T ss_pred             eEEEEEcCCCCC-----CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence            999999996311     01133345678999999999 667889999999999999998654 45666777799999999


Q ss_pred             CC-CCEEEEecCCCcEEEEEccCC--------------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868          164 LD-SEFLATTSTDGSARIWKTEDG--------------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       164 ~~-~~~l~~~~~d~~i~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                      |+ ...||+++.|+.+.+||+..-              +++..--+|.. .|..+.|+|...+.    +++..+|+.+.|
T Consensus       326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~----I~SvaeDN~LqI  400 (422)
T KOG0264|consen  326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWT----IASVAEDNILQI  400 (422)
T ss_pred             CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeE----EEEecCCceEEE
Confidence            95 568889999999999999631              12233334444 69999999999984    688999999999


Q ss_pred             EECC
Q 024868          229 YDIS  232 (261)
Q Consensus       229 ~d~~  232 (261)
                      |++.
T Consensus       401 W~~s  404 (422)
T KOG0264|consen  401 WQMA  404 (422)
T ss_pred             eecc
Confidence            9986

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.2e-24  Score=154.89  Aligned_cols=194  Identities=17%  Similarity=0.230  Sum_probs=160.6

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc--EEEEeccC
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVD  133 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d  133 (261)
                      ...+..|.+.+++++.  ++.++++|+.|.+|+|||+.....       ....+.|.+.|+++.|.+.-.  .|++|+.|
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-------lg~ll~HagsitaL~F~~~~S~shLlS~sdD  106 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-------LGILLSHAGSITALKFYPPLSKSHLLSGSDD  106 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-------hcceeccccceEEEEecCCcchhheeeecCC
Confidence            4567889999999999  589999999999999999988764       133455679999999999764  89999999


Q ss_pred             CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  213 (261)
                      |.|.+|+...-+.+..+..|.+.|+.++.+|.|++.++.+.|+.++.||+-+|+.-..+.-.+.  .+.+.|+|.|.+++
T Consensus       107 G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~  184 (362)
T KOG0294|consen  107 GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFV  184 (362)
T ss_pred             CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEE
Confidence            9999999999988888888988999999999999999999999999999998887665554333  45578888888633


Q ss_pred             EE----------------------------------EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE--eeCCC
Q 024868          214 LF----------------------------------CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI--SLDGK  257 (261)
Q Consensus       214 ~~----------------------------------~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--s~dg~  257 (261)
                      +.                                  .+++|++|+.|.+||..+..+...+..|...|.++.+  .|++.
T Consensus       185 v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~  264 (362)
T KOG0294|consen  185 VSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE  264 (362)
T ss_pred             EEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence            22                                  1356889999999999998888888899999888874  24455


Q ss_pred             EEe
Q 024868          258 YLA  260 (261)
Q Consensus       258 ~la  260 (261)
                      ||+
T Consensus       265 ~lv  267 (362)
T KOG0294|consen  265 YLV  267 (362)
T ss_pred             EEE
Confidence            654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.6e-25  Score=164.91  Aligned_cols=228  Identities=12%  Similarity=0.108  Sum_probs=181.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      -|||.|++-+|.   +.+++.|+-.+        .+|.|...++.+      ...+..|-..|+++.|+-||..|++|+.
T Consensus        81 Pg~v~al~s~n~---G~~l~ag~i~g--------~lYlWelssG~L------L~v~~aHYQ~ITcL~fs~dgs~iiTgsk  143 (476)
T KOG0646|consen   81 PGPVHALASSNL---GYFLLAGTISG--------NLYLWELSSGIL------LNVLSAHYQSITCLKFSDDGSHIITGSK  143 (476)
T ss_pred             ccceeeeecCCC---ceEEEeecccC--------cEEEEEeccccH------HHHHHhhccceeEEEEeCCCcEEEecCC
Confidence            478999998885   56777776888        899999999887      5567889999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccc--eeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868           84 NGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  159 (261)
                      ||.|.+|.+-+--....  ..........|.-+|+++...+.  ..++++++.|.++++||+..+..+... .....+.+
T Consensus       144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~a  222 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKA  222 (476)
T ss_pred             CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCccee
Confidence            99999999854321110  11112223345678999888774  358999999999999999988776543 45568999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEccCC----------------cEEEEEeecCC-CceEEEEEecCCCcceEEEEEeeCC
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTEDG----------------VAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGD  222 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~----------------~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~  222 (261)
                      ++.+|.++.++.|+.+|.|.+.++.+-                ..+..+.+|.+ ..|++++.+-||..     +++|+.
T Consensus       223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgtl-----LlSGd~  297 (476)
T KOG0646|consen  223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTL-----LLSGDE  297 (476)
T ss_pred             EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccE-----EEeeCC
Confidence            999999999999999999999887532                23445556655 46999999999998     799999


Q ss_pred             CcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       223 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      ||.+.|||+.+.+.++++....++|+.+.+.|
T Consensus       298 dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  298 DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             CCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence            99999999999888877776778888888854

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=3.1e-25  Score=160.10  Aligned_cols=233  Identities=16%  Similarity=0.197  Sum_probs=180.5

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.++.|+|.   ...+++|+.|+        .+..||......    ......-....+|.++.|+|.|.+|++|.+
T Consensus       172 ~devn~l~FHPr---e~ILiS~srD~--------tvKlFDfsK~sa----KrA~K~~qd~~~vrsiSfHPsGefllvgTd  236 (430)
T KOG0640|consen  172 VDEVNDLDFHPR---ETILISGSRDN--------TVKLFDFSKTSA----KRAFKVFQDTEPVRSISFHPSGEFLLVGTD  236 (430)
T ss_pred             cCcccceeecch---hheEEeccCCC--------eEEEEecccHHH----HHHHHHhhccceeeeEeecCCCceEEEecC
Confidence            457999999995   66899999988        666666544322    001112234568999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC--ceeEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVLDMD  161 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~  161 (261)
                      -.++++||+++.++-..    ......|.+.|+++.+|+.+++.++++.||.|++||--+++++..+...|+  .|.+..
T Consensus       237 Hp~~rlYdv~T~Qcfvs----anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~  312 (430)
T KOG0640|consen  237 HPTLRLYDVNTYQCFVS----ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV  312 (430)
T ss_pred             CCceeEEeccceeEeee----cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence            99999999999876322    234456789999999999999999999999999999888888777665554  699999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC----CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                      |..+|+++++.+.|..+++|.+.+++++.++.+...    ..-+...|+....+.    ++.-...+.+.-||.++...+
T Consensus       313 Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyV----l~pDEas~slcsWdaRtadr~  388 (430)
T KOG0640|consen  313 FTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYV----LFPDEASNSLCSWDARTADRV  388 (430)
T ss_pred             EccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceE----EccccccCceeeccccchhhh
Confidence            999999999999999999999999999998875421    012345577777662    344445678999999988765


Q ss_pred             eee-eccCcCeeEEEEeeCCCEE
Q 024868          238 GHK-RLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       238 ~~~-~~~~~~v~~~~~s~dg~~l  259 (261)
                      ... .+|.+.+..+.-||.+.-+
T Consensus       389 ~l~slgHn~a~R~i~HSP~~p~F  411 (430)
T KOG0640|consen  389 ALLSLGHNGAVRWIVHSPVEPAF  411 (430)
T ss_pred             hhcccCCCCCceEEEeCCCCCce
Confidence            443 3678888888888877544

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=8.5e-24  Score=168.45  Aligned_cols=238  Identities=14%  Similarity=0.141  Sum_probs=186.5

Q ss_pred             CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc-eecCCeEEeeecCCCCCceEEEECCCCCeEEE
Q 024868            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (261)
Q Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (261)
                      .....+.+++|.|.+...+.++.-       .+|.+..+..+..... ..........+.+|...|.+++++.+...+++
T Consensus       318 r~~~kiks~dv~~~~~~~~~lv~l-------~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S  390 (888)
T KOG0306|consen  318 RTSAKIKSFDVTPSGGTENTLVLL-------ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS  390 (888)
T ss_pred             echhheeEEEEEecCCcceeEEEe-------ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee
Confidence            345678999999988666455541       1234477777763222 11222345678899999999999998877777


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~  160 (261)
                      + ..+.+++|+..+.++        +.++.. +.+.+..|-|.+++++.|...|.+.+||+.+...+.....|.+.|+++
T Consensus       391 g-a~~SikiWn~~t~kc--------iRTi~~-~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi  460 (888)
T KOG0306|consen  391 G-AGESIKIWNRDTLKC--------IRTITC-GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI  460 (888)
T ss_pred             c-CCCcEEEEEccCcce--------eEEecc-ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeee
Confidence            6 456799999998876        333322 378889999999999999999999999999988887788888999999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccC-----CcEEEEEeec------CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~------~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~  229 (261)
                      +.+||++.+++++.|.+|++||..-     |...+.+.-+      ....|.++.+||||++     ++.+--|+++++|
T Consensus       461 ~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~-----LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  461 SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL-----LAVSLLDNTVKVY  535 (888)
T ss_pred             eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE-----EEEEeccCeEEEE
Confidence            9999999999999999999999751     2221111111      1234999999999998     6777789999999


Q ss_pred             ECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      -+.+.+..-.+.+|.-||.+|..|||++.+++
T Consensus       536 flDtlKFflsLYGHkLPV~smDIS~DSklivT  567 (888)
T KOG0306|consen  536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVT  567 (888)
T ss_pred             EecceeeeeeecccccceeEEeccCCcCeEEe
Confidence            99999988788999999999999999999874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=4.1e-24  Score=157.82  Aligned_cols=216  Identities=16%  Similarity=0.143  Sum_probs=176.2

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC---CCeEEEEecCCcEEEEEEeCC
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFVCSTTNGGCKLFEVYGG   95 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~~~~~~   95 (261)
                      ...|.+|+.||        .+..||..+..       ...+.+|.+++.+++|...   ...+++++.|.++++|..+.+
T Consensus       115 ~~~IltgsYDg--------~~riWd~~Gk~-------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  115 SKWILTGSYDG--------TSRIWDLKGKS-------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             CceEEEeecCC--------eeEEEecCCce-------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            45788999999        88888887765       6678899999998888432   336999999999999999887


Q ss_pred             ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-------------------------ceEEeec
Q 024868           96 ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-------------------------LRIILDE  150 (261)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-------------------------~~~~~~~  150 (261)
                      .......   .....|...|.++...++|..+++|+.|..|.+|+..+                         +.++..+
T Consensus       180 ~~~~~~~---~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  180 ENKVKAL---KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             hhhhhHH---hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence            6544332   22236788999999999999999999999999999321                         1123344


Q ss_pred             cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       151 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      .+|.++|.++.|++ ...+++++.|.+|+.||+.+++.+.++....  ...++..+|..+.     +++++.|..+++||
T Consensus       257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~~~~~~L-----l~~gssdr~irl~D  328 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISYSPLSKL-----LASGSSDRHIRLWD  328 (423)
T ss_pred             cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc--ceeEeecccccce-----eeecCCCCceeecC
Confidence            56778999999998 6789999999999999999999988887543  5899999998887     79999999999999


Q ss_pred             CCCCe---EEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          231 ISTWN---KIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       231 ~~~~~---~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .+++.   ...++.+|.+.|.++.|+|...++.
T Consensus       329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~  361 (423)
T KOG0313|consen  329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQL  361 (423)
T ss_pred             CCCCCCceeEEeeecchhhhhheecCCCCceEE
Confidence            98764   2356778999999999999877654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.9e-25  Score=158.78  Aligned_cols=173  Identities=14%  Similarity=0.223  Sum_probs=132.1

Q ss_pred             CeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc--------------------------------
Q 024868           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN--------------------------------  100 (261)
Q Consensus        53 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--------------------------------  100 (261)
                      |.....+++|.+.|++++|+.||++|++++.|+.|++|++++......                                
T Consensus        76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence            444567899999999999999999999999999999999986432000                                


Q ss_pred             ------eeeeeCC--------------CCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868          101 ------LLAKKMP--------------PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (261)
Q Consensus       101 ------~~~~~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~  160 (261)
                            ...+...              .-.|.-.+..+-..-.+++|++++.|..|.+|+++ |+.+..+......-+..
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence                  0000000              00112234445555567889999999999999997 77766666555567888


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEcc---CC-----cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTE---DG-----VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~---~~-----~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      +.||+|+++++++..--|++|..-   .|     ..+..+++|.. .|..++|+++.++     +++.+.||++++||+.
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r-----~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTR-----AVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcce-----eEEEecCCcEEEeecc
Confidence            999999999999998899999863   22     24556777766 5999999999999     7999999999999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=3.1e-24  Score=164.04  Aligned_cols=187  Identities=14%  Similarity=0.140  Sum_probs=157.9

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~  141 (261)
                      ...-+.++...|||+.|++|++-.++.|||+.......+.     ......-.++.++.+||.+..+++..||.|.|||+
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprika-----eltssapaCyALa~spDakvcFsccsdGnI~vwDL  538 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA-----ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL  538 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhh-----hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc
Confidence            3457889999999999999999999999999876542221     11111245788999999999999999999999999


Q ss_pred             cCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                      .+...++.+.+|...+.|+..++||..|-+|+-|++|+-||+++++.+.....  ...|.++..+|.+.+     ++.|.
T Consensus       539 hnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF--~SQIfSLg~cP~~dW-----lavGM  611 (705)
T KOG0639|consen  539 HNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF--SSQIFSLGYCPTGDW-----LAVGM  611 (705)
T ss_pred             ccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh--hhhheecccCCCccc-----eeeec
Confidence            99999999999999999999999999999999999999999999987665442  335999999999999     68899


Q ss_pred             CCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       222 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +++.+.+......+. ..+..|+..|.++.|++.|+++++
T Consensus       612 ens~vevlh~skp~k-yqlhlheScVLSlKFa~cGkwfvS  650 (705)
T KOG0639|consen  612 ENSNVEVLHTSKPEK-YQLHLHESCVLSLKFAYCGKWFVS  650 (705)
T ss_pred             ccCcEEEEecCCccc-eeecccccEEEEEEecccCceeee
Confidence            999999988766554 357788899999999999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.3e-22  Score=156.44  Aligned_cols=224  Identities=17%  Similarity=0.143  Sum_probs=157.7

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d   84 (261)
                      .+.+++|+|+.  ..++++++.++        .++.||..+.+.      ...+..+. .+..++|+|+++.++++ ..+
T Consensus        32 ~~~~l~~~~dg--~~l~~~~~~~~--------~v~~~d~~~~~~------~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~   94 (300)
T TIGR03866        32 RPRGITLSKDG--KLLYVCASDSD--------TIQVIDLATGEV------IGTLPSGP-DPELFALHPNGKILYIANEDD   94 (300)
T ss_pred             CCCceEECCCC--CEEEEEECCCC--------eEEEEECCCCcE------EEeccCCC-CccEEEECCCCCEEEEEcCCC
Confidence            35678888753  34556676777        788899877654      22333333 35678999999977655 457


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-eEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      +.+++||+.+....        ..+.....+.+++|+|++++++++..++ .+.+||.++++...... .......++|+
T Consensus        95 ~~l~~~d~~~~~~~--------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s  165 (300)
T TIGR03866        95 NLVTVIDIETRKVL--------AEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT  165 (300)
T ss_pred             CeEEEEECCCCeEE--------eEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC
Confidence            89999999875431        1112223467899999999999887665 56778988776644332 23345789999


Q ss_pred             CCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCC------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          164 LDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSD------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       164 ~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      |++++++++ ..++.|++||+++++.+..+..+..      .....++|+|++++++    ++.+.++.+.+||+++++.
T Consensus       166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~----~~~~~~~~i~v~d~~~~~~  241 (300)
T TIGR03866       166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF----VALGPANRVAVVDAKTYEV  241 (300)
T ss_pred             CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE----EEcCCCCeEEEEECCCCcE
Confidence            999988655 4689999999999987776643211      1234688999999732    3334566899999998887


Q ss_pred             EeeeeccCcCeeEEEEeeCCCEEe
Q 024868          237 IGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +.... +...+.+++|+|+|++|+
T Consensus       242 ~~~~~-~~~~~~~~~~~~~g~~l~  264 (300)
T TIGR03866       242 LDYLL-VGQRVWQLAFTPDEKYLL  264 (300)
T ss_pred             EEEEE-eCCCcceEEECCCCCEEE
Confidence            65443 445788999999999886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.8e-23  Score=149.40  Aligned_cols=216  Identities=15%  Similarity=0.129  Sum_probs=158.6

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC--eEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~   80 (261)
                      ..++|+|+|.+..     ++|+|+.|.        +|..||.....-      ...+-.|.+.|+++.|.++..  .|++
T Consensus        42 H~~sitavAVs~~-----~~aSGssDe--------tI~IYDm~k~~q------lg~ll~HagsitaL~F~~~~S~shLlS  102 (362)
T KOG0294|consen   42 HAGSITALAVSGP-----YVASGSSDE--------TIHIYDMRKRKQ------LGILLSHAGSITALKFYPPLSKSHLLS  102 (362)
T ss_pred             cccceeEEEecce-----eEeccCCCC--------cEEEEeccchhh------hcceeccccceEEEEecCCcchhheee
Confidence            3578899988653     899999999        999999876542      334667899999999998764  8999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc-------
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-------  153 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------  153 (261)
                      |+.||.|.+|+.......       ...-.|.+.|+.++.+|.+++.++.+.|+.+++|++-+++......-.       
T Consensus       103 ~sdDG~i~iw~~~~W~~~-------~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~  175 (362)
T KOG0294|consen  103 GSDDGHIIIWRVGSWELL-------KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVS  175 (362)
T ss_pred             ecCCCcEEEEEcCCeEEe-------eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeE
Confidence            999999999999877541       111235677999999999999999999999999998665432111100       


Q ss_pred             --------------------------------CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceE
Q 024868          154 --------------------------------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE  201 (261)
Q Consensus       154 --------------------------------~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  201 (261)
                                                      ...+.++.|- ++..|++|.+|+.|.+||.....+...+..|.. +|-
T Consensus       176 w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~-RVK  253 (362)
T KOG0294|consen  176 WSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN-RVK  253 (362)
T ss_pred             EcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh-hee
Confidence                                            0112233332 346788888899999999998899888888876 588


Q ss_pred             EEEEe--cCCCcceEEEEEeeCCCcEEEEEECCCC-----eEEeeeeccCcCeeEEEE
Q 024868          202 LCRFS--KDGTKPFLFCTVQRGDKALLAVYDISTW-----NKIGHKRLLRKPASVLSI  252 (261)
Q Consensus       202 ~~~~~--p~~~~~~~~~~~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~  252 (261)
                      ++.+-  |++.+     +++++.||.|++||++..     +.+..... +..++|+..
T Consensus       254 ~i~~~~~~~~~~-----lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  254 DIASYTNPEHEY-----LVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             eeEEEecCCceE-----EEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence            88753  45555     799999999999999865     23333332 445555544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=1e-23  Score=170.39  Aligned_cols=212  Identities=14%  Similarity=0.174  Sum_probs=180.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+.|.++++..   ...++++|+.|.        ++..||..++.+      .+.+.+|...+.++...  ...+++|+.
T Consensus       249 ~g~V~~l~~~~---~~~~lvsgS~D~--------t~rvWd~~sg~C------~~~l~gh~stv~~~~~~--~~~~~sgs~  309 (537)
T KOG0274|consen  249 FGGVWGLAFPS---GGDKLVSGSTDK--------TERVWDCSTGEC------THSLQGHTSSVRCLTID--PFLLVSGSR  309 (537)
T ss_pred             CCCceeEEEec---CCCEEEEEecCC--------cEEeEecCCCcE------EEEecCCCceEEEEEcc--CceEeeccC
Confidence            57888888875   366999999999        899999888887      78899999999998874  446788899


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      |.+|++|++.++..        ...+. |.++|+++..+  +.++++|+.|++|.+||+.+++.+..+.+|...|+++.+
T Consensus       310 D~tVkVW~v~n~~~--------l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~  379 (537)
T KOG0274|consen  310 DNTVKVWDVTNGAC--------LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV  379 (537)
T ss_pred             CceEEEEeccCcce--------EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEe
Confidence            99999999997765        33444 78999999987  789999999999999999999999999999999999988


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      .+. ..+++|+.|+.|++||+++. +++.++..|... +..+  ...++.     +++++.|++|++||..+++.+..+.
T Consensus       380 ~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~-v~~l--~~~~~~-----Lvs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  380 DSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL-VSSL--LLRDNF-----LVSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             cCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc-cccc--ccccce-----eEeccccccEEEeecccCceeeeec
Confidence            765 89999999999999999999 999999877653 5444  445566     6899999999999999999998887


Q ss_pred             c-cCcCeeEEEEe
Q 024868          242 L-LRKPASVLSIS  253 (261)
Q Consensus       242 ~-~~~~v~~~~~s  253 (261)
                      . +...+..+++.
T Consensus       451 ~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  451 GRHVGGVSALALG  463 (537)
T ss_pred             cCCcccEEEeecC
Confidence            7 55777777765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=1.1e-23  Score=151.21  Aligned_cols=197  Identities=15%  Similarity=0.174  Sum_probs=156.8

Q ss_pred             ecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCcc--ccceee------eeCCCCCCCCCeEEEEEee-CCcEEE
Q 024868           59 FDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGAT--DINLLA------KKMPPLQDAGPQKCLSFSV-DGSRFA  128 (261)
Q Consensus        59 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~------~~~~~~~~~~~v~~~~~s~-~~~~l~  128 (261)
                      ...|.+.|.++.+.+ .|+++++|+.||.+.+||++....  ...+..      .....-.|+-.|.++.|-| |.-.+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            456889999999987 799999999999999999987652  111111      1122334566899999999 666888


Q ss_pred             EeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC---CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEE
Q 024868          129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (261)
Q Consensus       129 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  205 (261)
                      +++-|.++++||..+.+... .+...+.|++-+|||-   --++|+|..|-+|++.|+.+|...+.+.+|.+. |.++.|
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~-vlaV~W  196 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG-VLAVEW  196 (397)
T ss_pred             cccccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc-eEEEEe
Confidence            88999999999999887754 4456678999999994   347888889999999999999999999999875 999999


Q ss_pred             ecCCCcceEEEEEeeCCCcEEEEEECCCC-eEE--------------eeeeccCcCeeEEEEeeCCCEEeC
Q 024868          206 SKDGTKPFLFCTVQRGDKALLAVYDISTW-NKI--------------GHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~--------------~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +|...++    +++++.||.|++||++.- .+.              +....|.+.+..++|+.||+++++
T Consensus       197 sp~~e~v----LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~  263 (397)
T KOG4283|consen  197 SPSSEWV----LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS  263 (397)
T ss_pred             ccCceeE----EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence            9999984    799999999999999743 111              122345578899999999998863

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.9e-24  Score=159.65  Aligned_cols=232  Identities=15%  Similarity=0.158  Sum_probs=180.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~   82 (261)
                      +.||.+++|.|..  ...+++++...        .++.||..+.++..    ...+.++ ...+..+.++|++++|+..+
T Consensus       257 ~fPi~~a~f~p~G--~~~i~~s~rrk--------y~ysyDle~ak~~k----~~~~~g~e~~~~e~FeVShd~~fia~~G  322 (514)
T KOG2055|consen  257 KFPIQKAEFAPNG--HSVIFTSGRRK--------YLYSYDLETAKVTK----LKPPYGVEEKSMERFEVSHDSNFIAIAG  322 (514)
T ss_pred             cCccceeeecCCC--ceEEEecccce--------EEEEeecccccccc----ccCCCCcccchhheeEecCCCCeEEEcc
Confidence            5799999999953  44677777777        78999998877522    1122333 34577899999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC-ceeEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMD  161 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~  161 (261)
                      ..|.|.+....+++.        +..+.-.+.|..++|+.|++.|++++.+|.|++||+++...+..+....+ .-++++
T Consensus       323 ~~G~I~lLhakT~el--------i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~  394 (514)
T KOG2055|consen  323 NNGHIHLLHAKTKEL--------ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLC  394 (514)
T ss_pred             cCceEEeehhhhhhh--------hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeee
Confidence            999999999988875        55555678899999999999999999999999999999877665544333 346777


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccC------CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          162 FSLDSEFLATTSTDGSARIWKTED------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      .++++.+||+|+..|.|.|||.++      .++++.+..-.. .|+++.|+||.+.+.   +++...+..+++-.+.+..
T Consensus       395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt-~Itsl~Fn~d~qiLA---iaS~~~knalrLVHvPS~T  470 (514)
T KOG2055|consen  395 ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT-AITSLQFNHDAQILA---IASRVKKNALRLVHVPSCT  470 (514)
T ss_pred             ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe-eeeeeeeCcchhhhh---hhhhccccceEEEecccee
Confidence            889999999999999999999753      455655544333 499999999999742   4566677889999998876


Q ss_pred             EEeeeeccC---cCeeEEEEeeCCCEEeC
Q 024868          236 KIGHKRLLR---KPASVLSISLDGKYLAM  261 (261)
Q Consensus       236 ~~~~~~~~~---~~v~~~~~s~dg~~la~  261 (261)
                      ....+....   +.+++++|||.|-+||+
T Consensus       471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAv  499 (514)
T KOG2055|consen  471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAV  499 (514)
T ss_pred             eeccCCCCCCcccceEEEEecCCCceEEe
Confidence            655444332   57899999999999985

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.4e-23  Score=164.73  Aligned_cols=198  Identities=12%  Similarity=0.129  Sum_probs=164.0

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEE-CCCCCeEEEEecCCcEEEEEEeCCcc-
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-NPSGDDFVCSTTNGGCKLFEVYGGAT-   97 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~-   97 (261)
                      +.+++++.|.        .|..|+.....-    .....+..|.+-|.|+++ .++...+|+|+-|+.|.+||+..+.. 
T Consensus        86 ~tlIS~SsDt--------TVK~W~~~~~~~----~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~  153 (735)
T KOG0308|consen   86 KTLISASSDT--------TVKVWNAHKDNT----FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT  153 (735)
T ss_pred             CceEEecCCc--------eEEEeecccCcc----hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh
Confidence            3566666666        677777655431    124568889999999999 78888999999999999999997732 


Q ss_pred             -ccceeeeeCC--CCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC
Q 024868           98 -DINLLAKKMP--PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST  174 (261)
Q Consensus        98 -~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  174 (261)
                       ..........  ...+...|++++.++.|..|++|+..+.+++||.++++.+.++.+|...|..+..++||+.+++++.
T Consensus       154 l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS  233 (735)
T KOG0308|consen  154 LVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS  233 (735)
T ss_pred             hhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC
Confidence             1111100111  1145688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          175 DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       175 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      ||+|++||+...+++.++..|..+ |+++..+|+=+.     +.+|+.||.|+.=|+++..
T Consensus       234 DgtIrlWdLgqQrCl~T~~vH~e~-VWaL~~~~sf~~-----vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  234 DGTIRLWDLGQQRCLATYIVHKEG-VWALQSSPSFTH-----VYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             CceEEeeeccccceeeeEEeccCc-eEEEeeCCCcce-----EEecCCCCcEEecccCCch
Confidence            999999999999999999998886 999999988887     7899999999999998853

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=1.6e-23  Score=158.15  Aligned_cols=235  Identities=17%  Similarity=0.182  Sum_probs=171.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~   82 (261)
                      .++|+|++|+|.. ...++++|...|        +|-.||..+..-  .......+..|..+|.++.|+| +-..+++.+
T Consensus       186 ~~Rit~l~fHPt~-~~~lva~GdK~G--------~VG~Wn~~~~~~--d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  186 DRRITSLAFHPTE-NRKLVAVGDKGG--------QVGLWNFGTQEK--DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             ccceEEEEecccC-cceEEEEccCCC--------cEEEEecCCCCC--ccCceEEeccCCccccceEecCCChhheeeec
Confidence            4789999999975 468999999999        776777642221  1122457888999999999999 456788889


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMD  161 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~  161 (261)
                      .||+|+.-|++........     ..-.......++.|+.+...++++..-|...+||.++++. ...+.-|...|.+++
T Consensus       255 yDGtiR~~D~~~~i~e~v~-----s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNISEEVL-----SLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA  329 (498)
T ss_pred             cCceeeeeeecchhhHHHh-----hcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence            9999999999877531111     1111234567888998888888888888999999998765 344445566899999


Q ss_pred             EcC-CCCEEEEecCCCcEEEEEccCCcEE----EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC----
Q 024868          162 FSL-DSEFLATTSTDGSARIWKTEDGVAW----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----  232 (261)
Q Consensus       162 ~s~-~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~----  232 (261)
                      ++| ...++++++.|++++|||++.-+..    -....|. ..|.++.|||++-.     +++.+.|..|+|||..    
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr-rsV~sAyFSPs~gt-----l~TT~~D~~IRv~dss~~sa  403 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR-RSVNSAYFSPSGGT-----LLTTCQDNEIRVFDSSCISA  403 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc-ceeeeeEEcCCCCc-----eEeeccCCceEEeecccccc
Confidence            999 5668899999999999999853322    2223343 46999999999887     6899999999999983    


Q ss_pred             CCeEEeeeeccC----c--CeeEEEEeeCCCEEeC
Q 024868          233 TWNKIGHKRLLR----K--PASVLSISLDGKYLAM  261 (261)
Q Consensus       233 ~~~~~~~~~~~~----~--~v~~~~~s~dg~~la~  261 (261)
                      .-++...+. |.    .  ......|.||..++++
T Consensus       404 ~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~v  437 (498)
T KOG4328|consen  404 KDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVV  437 (498)
T ss_pred             cCCccceee-ccCcccccccchhheeCCCccEEEE
Confidence            223332222 22    1  2345679998888764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.6e-24  Score=170.32  Aligned_cols=208  Identities=12%  Similarity=0.143  Sum_probs=156.5

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCC---CCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDES---EGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  113 (261)
                      .++.+++.......    ....+..   .-.+..+.|+. +.++||+++..|.|.+||+........    ....-.|..
T Consensus        63 klyai~~~~~~~~~----~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~----l~~f~EH~R  134 (839)
T KOG0269|consen   63 KLYAINPNDFSEKC----NHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKL----LTVFNEHER  134 (839)
T ss_pred             eeEeeCcccCCcce----eeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchh----hhHhhhhcc
Confidence            78888776554311    1111111   12466788875 578899999999999999976321000    012234677


Q ss_pred             CeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCC-cEEE
Q 024868          114 PQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG-VAWT  190 (261)
Q Consensus       114 ~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~-~~~~  190 (261)
                      .+.++.|++ ...+|++|+.||.|++||++..+....+......|+++.|+| .+.+++++.+.|.+++||++.. ++..
T Consensus       135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~  214 (839)
T KOG0269|consen  135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK  214 (839)
T ss_pred             ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH
Confidence            899999998 567899999999999999998887777777667899999999 5778999999999999999964 4555


Q ss_pred             EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee-eccCcCeeEEEEeeCCCEE
Q 024868          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       191 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l  259 (261)
                      .+..|.+ +|.++.|+|++.+     +++||.|+.|+|||+.+.+.-... ..-..++..++|-|+.++.
T Consensus       215 k~~AH~G-pV~c~nwhPnr~~-----lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h  278 (839)
T KOG0269|consen  215 KLTAHNG-PVLCLNWHPNREW-----LATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH  278 (839)
T ss_pred             HhhcccC-ceEEEeecCCCce-----eeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch
Confidence            6666654 8999999998888     799999999999999866543222 2234789999999987753

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.1e-23  Score=152.74  Aligned_cols=220  Identities=11%  Similarity=0.154  Sum_probs=172.1

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc-
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-   97 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-   97 (261)
                      +.++.+++.|.        ....|..+++.+      ...+.+|.+.|++++|++.+.++++++.|++..||...-.-. 
T Consensus       160 qpi~gtASADh--------TA~iWs~Esg~C------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v  225 (481)
T KOG0300|consen  160 QPICGTASADH--------TARIWSLESGAC------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV  225 (481)
T ss_pred             Ccceeeccccc--------ceeEEeeccccc------eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence            44666666676        666777777776      567899999999999999999999999999999998321100 


Q ss_pred             -----c---------------------------cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868           98 -----D---------------------------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (261)
Q Consensus        98 -----~---------------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  145 (261)
                           .                           ..+..+......|...|.+..|-..|+.+++++.|++..+||+++++
T Consensus       226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge  305 (481)
T KOG0300|consen  226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE  305 (481)
T ss_pred             CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc
Confidence                 0                           00000111222345678888899899999999999999999999999


Q ss_pred             EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (261)
Q Consensus       146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~  224 (261)
                      .+..+.+|....+.++-+|..+++++++.|.+.++||++.. +.+..|++|.+ .|+++.|.-+.+.      +++++|.
T Consensus       306 ~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd-tVTS~vF~~dd~v------VSgSDDr  378 (481)
T KOG0300|consen  306 VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD-TVTSVVFNTDDRV------VSGSDDR  378 (481)
T ss_pred             eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc-ceeEEEEecCCce------eecCCCc
Confidence            99888888889999999999999999999999999999843 45677888877 4999999998884      9999999


Q ss_pred             EEEEEECCCCe-EEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          225 LLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       225 ~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +|++||+++.. ++.++. ...++..++.+..+..+|
T Consensus       379 TvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIA  414 (481)
T KOG0300|consen  379 TVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIA  414 (481)
T ss_pred             eEEEeeeccccCcceeee-cCCccceeEeecCCceEE
Confidence            99999998765 344443 345667777776666655

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=167.93  Aligned_cols=211  Identities=14%  Similarity=0.213  Sum_probs=172.7

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEee-ecCCCCCceEEEECCCCCeEEEEec
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV-FDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+.|..|..     ..+..|..+.        .|..|+..++..      ... +.+|.+.|.++++..-+.+|++|+.
T Consensus       209 ~~~~~~q~~~-----~~~~~~s~~~--------tl~~~~~~~~~~------i~~~l~GH~g~V~~l~~~~~~~~lvsgS~  269 (537)
T KOG0274|consen  209 HVVLCLQLHD-----GFFKSGSDDS--------TLHLWDLNNGYL------ILTRLVGHFGGVWGLAFPSGGDKLVSGST  269 (537)
T ss_pred             chhhhheeec-----CeEEecCCCc--------eeEEeecccceE------EEeeccCCCCCceeEEEecCCCEEEEEec
Confidence            3455566663     2677888877        788899888765      444 8999999999999877889999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |.++++||..++.+...+       ..|.+.+.++...  ...+++|+.|.+|++|++.++..+..+.+|..+|.++..+
T Consensus       270 D~t~rvWd~~sg~C~~~l-------~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~  340 (537)
T KOG0274|consen  270 DKTERVWDCSTGECTHSL-------QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD  340 (537)
T ss_pred             CCcEEeEecCCCcEEEEe-------cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence            999999999998872221       2355667776554  4577888999999999999999887777788899999998


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-eEEeeeec
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRL  242 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~  242 (261)
                        +.++++|+.|+.|++||..++++++.+.+|.. .|.++.+.+. ..     +++++.|+.|++||+++. +++..+..
T Consensus       341 --~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~-----~~Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  341 --EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NR-----LLSGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             --CCEEEEEecCceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ce-----EEeeeeccceEeecCCchhhhhhhhcC
Confidence              88999999999999999999999999999776 6999977665 55     689999999999999999 88888888


Q ss_pred             cCcCeeEEEE
Q 024868          243 LRKPASVLSI  252 (261)
Q Consensus       243 ~~~~v~~~~~  252 (261)
                      |..-+..+.+
T Consensus       412 h~~~v~~l~~  421 (537)
T KOG0274|consen  412 HTSLVSSLLL  421 (537)
T ss_pred             Cccccccccc
Confidence            8777755543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=6.6e-23  Score=154.84  Aligned_cols=231  Identities=15%  Similarity=0.160  Sum_probs=183.3

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee----cC---------CeEEeeecCCCCCceEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY----TS---------PLVTYVFDESEGDPMTI   69 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~----~~---------~~~~~~~~~~~~~v~~~   69 (261)
                      ..-+|+|+++.|+   ..++..++.++        .|..|+..++.-.    ..         +..... +.|...+.++
T Consensus       141 H~~s~~~vals~d---~~~~fsask~g--------~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~  208 (479)
T KOG0299|consen  141 HQLSVTSVALSPD---DKRVFSASKDG--------TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTL  208 (479)
T ss_pred             ccCcceEEEeecc---ccceeecCCCc--------ceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEE
Confidence            3568999999996   55788888888        8888887655421    11         111111 3788899999


Q ss_pred             EECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCC-CCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe
Q 024868           70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (261)
Q Consensus        70 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~  148 (261)
                      +.++||++|++|+.|..|.||+.++...        ... ..|.+.|.+++|-.....+++++.|+.+++|+++....+.
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~eh--------v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve  280 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEH--------VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE  280 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccch--------hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence            9999999999999999999999998875        333 4567899999999888899999999999999999988888


Q ss_pred             eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868          149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       149 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                      .+++|++.|.++....-++.+-+|+.|+++++|++.... ...+.++.. .+.+++|-.+..+      ++|+++|.|.+
T Consensus       281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~-sidcv~~In~~Hf------vsGSdnG~IaL  352 (479)
T KOG0299|consen  281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEG-SIDCVAFINDEHF------VSGSDNGSIAL  352 (479)
T ss_pred             HHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCC-CeeeEEEecccce------eeccCCceEEE
Confidence            899999999999988888888888899999999995333 234444444 5999999877764      99999999999


Q ss_pred             EECCCCeEEeeee-ccC-----------cCeeEEEEeeCCCEEeC
Q 024868          229 YDISTWNKIGHKR-LLR-----------KPASVLSISLDGKYLAM  261 (261)
Q Consensus       229 ~d~~~~~~~~~~~-~~~-----------~~v~~~~~s~dg~~la~  261 (261)
                      |++.+.+++.... .|+           ..|++++..|...++|+
T Consensus       353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~as  397 (479)
T KOG0299|consen  353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLAS  397 (479)
T ss_pred             eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEe
Confidence            9999888775443 221           26888999888887764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=3.3e-23  Score=166.74  Aligned_cols=237  Identities=16%  Similarity=0.203  Sum_probs=185.3

Q ss_pred             ceeeEEEEEeeCCc--ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            5 GTVTCGSWIKRPEN--VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         5 ~~v~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .||..+++...++.  .+.+++--++.        ..+.|+..+.....-.+....++.....+++++.++.|++.+.|.
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~--------~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~  467 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKR--------SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY  467 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcc--------eEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence            46666666544322  35555544445        777777766554222222222333446789999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      ..|.|-+|+++++-.....    .....|.++|++++...-++.+++++.+|.+.+||..+...+.. ..-...+..+..
T Consensus       468 S~G~Id~fNmQSGi~r~sf----~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~-l~l~~~~~~iv~  542 (910)
T KOG1539|consen  468 SKGTIDRFNMQSGIHRKSF----GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS-LRLGSSITGIVY  542 (910)
T ss_pred             cCCeEEEEEcccCeeeccc----ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee-eccCCCcceeee
Confidence            9999999999988642221    12335789999999998899999999999999999987765433 334456788888


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      +.....++.+.+|-.|+++|..+.+.++.+.+|.+ .+++++|||||++     +++++.|++|++||+.++..+..+. 
T Consensus       543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-ritd~~FS~DgrW-----lisasmD~tIr~wDlpt~~lID~~~-  615 (910)
T KOG1539|consen  543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-RITDMTFSPDGRW-----LISASMDSTIRTWDLPTGTLIDGLL-  615 (910)
T ss_pred             eehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-ceeeeEeCCCCcE-----EEEeecCCcEEEEeccCcceeeeEe-
Confidence            88888999999999999999999999999998877 5999999999999     7999999999999999999886544 


Q ss_pred             cCcCeeEEEEeeCCCEEeC
Q 024868          243 LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la~  261 (261)
                      ...++.++.|||+|.+||+
T Consensus       616 vd~~~~sls~SPngD~LAT  634 (910)
T KOG1539|consen  616 VDSPCTSLSFSPNGDFLAT  634 (910)
T ss_pred             cCCcceeeEECCCCCEEEE
Confidence            4578899999999999985

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=8.2e-23  Score=150.97  Aligned_cols=170  Identities=17%  Similarity=0.290  Sum_probs=137.6

Q ss_pred             eEEeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEec
Q 024868           54 LVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGG  131 (261)
Q Consensus        54 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~  131 (261)
                      ...+.+.+|.+.=+.++|||- -..|++|.--+.|++|...++.-...    ......|...|..++|||. ...|++|+
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----~~Pf~gH~~SVEDLqWSptE~~vfaScS  277 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----QRPFTGHTKSVEDLQWSPTEDGVFASCS  277 (440)
T ss_pred             CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----CccccccccchhhhccCCccCceEEeee
Confidence            345678889999999999992 22477887778899999988653221    2344557889999999994 56889999


Q ss_pred             cCCeEEEEEccCce--EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC---CcEEEEEeecCCCceEEEEEe
Q 024868          132 VDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLTRNSDEKIELCRFS  206 (261)
Q Consensus       132 ~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~  206 (261)
                      .||+|+|||++.+.  .......|.+.|..++|+.+..+||+|++||.++|||+++   ++++..++.|.. +|+++.|+
T Consensus       278 ~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~  356 (440)
T KOG0302|consen  278 CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWH  356 (440)
T ss_pred             cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC-CeeEEEec
Confidence            99999999999873  2234467777899999999888999999999999999985   678888987765 79999999


Q ss_pred             cCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          207 KDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       207 p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      |.....    +++++.|.+|.+||+.
T Consensus       357 p~e~s~----iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  357 PHEDSV----IAASGEDNQITIWDLS  378 (440)
T ss_pred             cccCce----EEeccCCCcEEEEEee
Confidence            987663    5788899999999985

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-22  Score=165.06  Aligned_cols=225  Identities=21%  Similarity=0.244  Sum_probs=176.6

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      -+.++|.|+.   ..+.+++.++        .|..|+.....  ..|.   .+..+...|.+++.  ++..|++++.+++
T Consensus        16 ~t~i~~d~~g---efi~tcgsdg--------~ir~~~~~sd~--e~P~---ti~~~g~~v~~ia~--~s~~f~~~s~~~t   77 (933)
T KOG1274|consen   16 LTLICYDPDG---EFICTCGSDG--------DIRKWKTNSDE--EEPE---TIDISGELVSSIAC--YSNHFLTGSEQNT   77 (933)
T ss_pred             eEEEEEcCCC---CEEEEecCCC--------ceEEeecCCcc--cCCc---hhhccCceeEEEee--cccceEEeeccce
Confidence            5678898874   4788888888        77777665441  0111   12226677777776  4558999999999


Q ss_pred             EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCC
Q 024868           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS  166 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~  166 (261)
                      |.+|.+..+.....+ .      .-.-++++++|+.+|+++|.|+.|-.|++.++.+......+.+|..+|.++.|+|.+
T Consensus        78 v~~y~fps~~~~~iL-~------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~  150 (933)
T KOG1274|consen   78 VLRYKFPSGEEDTIL-A------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG  150 (933)
T ss_pred             EEEeeCCCCCcccee-e------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence            999999887752111 1      113578999999999999999999999999999888888889999999999999999


Q ss_pred             CEEEEecCCCcEEEEEccCCcEEEEEeecC-------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          167 EFLATTSTDGSARIWKTEDGVAWTFLTRNS-------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       167 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      ++||+.+.||.|++||+.++.+..++..-.       ...+..++|+|+|..     ++....|+.|++|+..+++....
T Consensus       151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-----la~~~~d~~Vkvy~r~~we~~f~  225 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-----LAVPPVDNTVKVYSRKGWELQFK  225 (933)
T ss_pred             CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-----EEeeccCCeEEEEccCCceehee
Confidence            999999999999999999988777664321       234678999999776     46677789999999999998765


Q ss_pred             eec--cCcCeeEEEEeeCCCEEeC
Q 024868          240 KRL--LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       240 ~~~--~~~~v~~~~~s~dg~~la~  261 (261)
                      +..  +...+..++|+|+|+|||.
T Consensus       226 Lr~~~~ss~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  226 LRDKLSSSKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             ecccccccceEEEEEcCCCcEEee
Confidence            543  3345899999999999984

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4e-22  Score=157.15  Aligned_cols=226  Identities=14%  Similarity=0.178  Sum_probs=179.5

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEECCCCCeEEEEec
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+|.|+|++.+   .+.+|++..+|        .|-.|++...-     .....+.++ ...|.+++|++ +.+|++.+.
T Consensus        26 s~I~slA~s~k---S~~lAvsRt~g--------~IEiwN~~~~w-----~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~   88 (691)
T KOG2048|consen   26 SEIVSLAYSHK---SNQLAVSRTDG--------NIEIWNLSNNW-----FLEPVIHGPEDRSIESLAWAE-GGRLFSSGL   88 (691)
T ss_pred             cceEEEEEecc---CCceeeeccCC--------cEEEEccCCCc-----eeeEEEecCCCCceeeEEEcc-CCeEEeecC
Confidence            46888999885   45689998888        77777776643     234445555 45799999994 556888889


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee--ccccCCceeEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--EPKAHKSVLDMD  161 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~  161 (261)
                      +|.|.-||+.+.+....       .-...+.|.+++.+|.+..++.|+.||.+..++...++....  +....+.+.+++
T Consensus        89 sg~i~EwDl~~lk~~~~-------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls  161 (691)
T KOG2048|consen   89 SGSITEWDLHTLKQKYN-------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS  161 (691)
T ss_pred             CceEEEEecccCceeEE-------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence            99999999998775221       122357899999999999999999999888888877765432  334456899999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec-------CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      |+|++..++.|+.||.|++||..+++.+.....+       ...-|+++.|-.++.      +++|...|+|.+||...+
T Consensus       162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------I~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  162 WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------IASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             ecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc------EEEecCCceEEEEcccCc
Confidence            9999999999999999999999998876632211       223478888888887      489999999999999999


Q ss_pred             eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          235 NKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .+++....|.+.|.+++.++++.++.
T Consensus       236 TLiqS~~~h~adVl~Lav~~~~d~vf  261 (691)
T KOG2048|consen  236 TLIQSHSCHDADVLALAVADNEDRVF  261 (691)
T ss_pred             chhhhhhhhhcceeEEEEcCCCCeEE
Confidence            99988999999999999999987764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4e-23  Score=155.37  Aligned_cols=230  Identities=13%  Similarity=0.152  Sum_probs=168.1

Q ss_pred             eeEEEEEee----CCcceEEEEecCCCCCCCCCceEEEEEcCC--CCceecC-------------CeEEeeecCCCCCce
Q 024868            7 VTCGSWIKR----PENVNLVVLGKSSRASSSPSVLEIFSFDPK--TTSVYTS-------------PLVTYVFDESEGDPM   67 (261)
Q Consensus         7 v~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~v~   67 (261)
                      -.|++|..-    .+..+++|+|.-+.        .|-+||++  ...++..             ........+|++.|.
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp--------~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl  247 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDP--------EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL  247 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCc--------eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHH
Confidence            357888433    24578999999988        55555553  3222110             011223447999999


Q ss_pred             EEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCc
Q 024868           68 TIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL  144 (261)
Q Consensus        68 ~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~  144 (261)
                      +++|+.+ .+.||+|+.|.+|++||+.++++        ...+. |.+.|.++.|+| ....|++|+.|+++.+.|.+..
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p--------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKP--------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCc--------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            9999874 56789999999999999999986        33333 568999999999 5788999999999999999864


Q ss_pred             eEEeeccccCCceeEEEEcCCC-CEEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC
Q 024868          145 RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (261)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~  222 (261)
                      ..........+.|..+.|.|.. ..+++++.||.++-+|+++ ++++.++..|.. +|.++++++.-..+    +++++.
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~----l~t~s~  394 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGL----LSTAST  394 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcc----eeeccc
Confidence            4433444556789999999954 5677788999999999996 489999998876 69999999988774    688999


Q ss_pred             CcEEEEEECCCCeE--EeeeeccCcCeeEEEEeeCCC
Q 024868          223 KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       223 d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~dg~  257 (261)
                      |+.+++|++.....  +......-+...|+++.|+-.
T Consensus       395 d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a  431 (463)
T KOG0270|consen  395 DKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA  431 (463)
T ss_pred             cceEEEEeecCCCCcccccccccccceeecccCCCcc
Confidence            99999999875433  211111113355666666543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=2.9e-24  Score=157.87  Aligned_cols=220  Identities=14%  Similarity=0.160  Sum_probs=176.8

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .-|+|+|=+|.  ....+++|+.||        .+..||.....+      ...+..|.+.|..+++..  ..+++++.|
T Consensus        67 dGV~~lakhp~--~ls~~aSGs~DG--------~VkiWnlsqR~~------~~~f~AH~G~V~Gi~v~~--~~~~tvgdD  128 (433)
T KOG0268|consen   67 DGVSCLAKHPN--KLSTVASGSCDG--------EVKIWNLSQREC------IRTFKAHEGLVRGICVTQ--TSFFTVGDD  128 (433)
T ss_pred             cccchhhcCcc--hhhhhhccccCc--------eEEEEehhhhhh------hheeecccCceeeEEecc--cceEEecCC
Confidence            35778777775  357899999999        888899877665      567899999999999987  568888999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  164 (261)
                      .+|+.|.++...         ...+.....+..+.-+..+..+++++.  .|.|||.....++..+.-....|.++.|+|
T Consensus       129 KtvK~wk~~~~p---------~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNp  197 (433)
T KOG0268|consen  129 KTVKQWKIDGPP---------LHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNP  197 (433)
T ss_pred             cceeeeeccCCc---------ceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCC
Confidence            999999988742         444445566777777766777888754  499999988878777776677899999999


Q ss_pred             CCC-EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeeec
Q 024868          165 DSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRL  242 (261)
Q Consensus       165 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~  242 (261)
                      ... .|+++..|+.|.+||++++.+++.+....  ..+.++|+|.+-.     ..++.+|..++.||++..+ ++.....
T Consensus       198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafn-----F~~a~ED~nlY~~DmR~l~~p~~v~~d  270 (433)
T KOG0268|consen  198 VETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFN-----FVAANEDHNLYTYDMRNLSRPLNVHKD  270 (433)
T ss_pred             CcchheeeeccCCceEEEecccCCccceeeeec--cccceecCccccc-----eeeccccccceehhhhhhcccchhhcc
Confidence            655 66777799999999999999998877543  4788999994443     4788999999999998755 4566778


Q ss_pred             cCcCeeEEEEeeCCCEEe
Q 024868          243 LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la  260 (261)
                      |.+.|.++.|||.|+-++
T Consensus       271 hvsAV~dVdfsptG~Efv  288 (433)
T KOG0268|consen  271 HVSAVMDVDFSPTGQEFV  288 (433)
T ss_pred             cceeEEEeccCCCcchhc
Confidence            889999999999998765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=2.4e-21  Score=149.43  Aligned_cols=211  Identities=17%  Similarity=0.197  Sum_probs=151.4

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeE-EEEecCCcEEEEEEeCCccc
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~   98 (261)
                      +++++++.++        .+..||..+.+.      ...+..+ ..+.+++|+|+++.+ +++..++.+++||..+++..
T Consensus         2 ~~~~s~~~d~--------~v~~~d~~t~~~------~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~   66 (300)
T TIGR03866         2 KAYVSNEKDN--------TISVIDTATLEV------TRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI   66 (300)
T ss_pred             cEEEEecCCC--------EEEEEECCCCce------EEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            4678888888        889999877653      3344444 346789999999976 55667899999999876531


Q ss_pred             cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCC-
Q 024868           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-  176 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-  176 (261)
                      .        .+.....+..++|+|+++.++++ ..++.+++||+.+.+.+..+. ....+.+++|+|+|+++++++.++ 
T Consensus        67 ~--------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~  137 (300)
T TIGR03866        67 G--------TLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTN  137 (300)
T ss_pred             E--------eccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCC
Confidence            1        11122335678999999877655 468999999998876654443 233568899999999999888765 


Q ss_pred             cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC-------cCeeE
Q 024868          177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASV  249 (261)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-------~~v~~  249 (261)
                      .+.+||.++++.........  .+..++|+|+++++    ++++..++.|++||+++++.+..+..+.       .....
T Consensus       138 ~~~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l----~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (300)
T TIGR03866       138 MAHFIDTKTYEIVDNVLVDQ--RPRFAEFTADGKEL----WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG  211 (300)
T ss_pred             eEEEEeCCCCeEEEEEEcCC--CccEEEECCCCCEE----EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc
Confidence            57788998887766554322  36789999999973    2455568999999999988765543221       12346


Q ss_pred             EEEeeCCCEEe
Q 024868          250 LSISLDGKYLA  260 (261)
Q Consensus       250 ~~~s~dg~~la  260 (261)
                      ++|+|||++++
T Consensus       212 i~~s~dg~~~~  222 (300)
T TIGR03866       212 IKLTKDGKTAF  222 (300)
T ss_pred             eEECCCCCEEE
Confidence            88999999743

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1e-22  Score=152.42  Aligned_cols=141  Identities=35%  Similarity=0.534  Sum_probs=118.2

Q ss_pred             CeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (261)
                      .-..++|+++|..+++++.||++++|+..+...+.....|+..|.++.|+|||++|++.+.| ..+||+.+++.++....
T Consensus       146 ~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  146 QQKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             cceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            33789999999999999999999999998888888888999999999999999999999999 89999998772211110


Q ss_pred             ----------------------------e-------------cC------------CCceEEEEEecCCCcceEEEEEee
Q 024868          194 ----------------------------R-------------NS------------DEKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       194 ----------------------------~-------------~~------------~~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                                                  .             +.            ...+.+++.+++|++     ++.+
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf-----~AlG  299 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF-----LALG  299 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE-----EEEe
Confidence                                        0             00            114889999999998     7889


Q ss_pred             CCCcEEEEEECCCCeEEeee-eccCcCeeEEEEeeCCCEEe
Q 024868          221 GDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~dg~~la  260 (261)
                      +.||.|.+++..+.+.++.. ..|...|+.+.|+||.++++
T Consensus       300 T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~  340 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLA  340 (398)
T ss_pred             ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccc
Confidence            99999999999988876544 46888999999999999876

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.4e-23  Score=174.02  Aligned_cols=236  Identities=14%  Similarity=0.168  Sum_probs=180.3

Q ss_pred             CceeeEEEEEeeCCc-ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868            4 GGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~   81 (261)
                      ..+-++++|.+.... .-+||.|..||        .|-.||+....-............|++.|..++|++. ++.||+|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG--------~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG  135 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDG--------NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG  135 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCC--------ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc
Confidence            456788999775422 23688888888        7888887653111112223456789999999999995 4599999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccCC--cee
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVL  158 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~  158 (261)
                      +.+|.|.|||+...+......     .....+.|.+++|+. ..+.|++++.+|.+.|||++..+.+..+..+..  .+.
T Consensus       136 a~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S  210 (1049)
T KOG0307|consen  136 ADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS  210 (1049)
T ss_pred             CCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence            999999999998755322211     222357899999998 456788888999999999998887766655544  478


Q ss_pred             EEEEcCCC-CEEEEecCCC---cEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          159 DMDFSLDS-EFLATTSTDG---SARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       159 ~~~~s~~~-~~l~~~~~d~---~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      .+.|+|+. ..+++++.|.   .|.+||++. ..+++++..|.. .|.++.|++.+..+    +++++.|+.|.+|+.++
T Consensus       211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~l----llSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRL----LLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchh----hhcccCCCCeeEecCCC
Confidence            99999975 3566666553   699999985 456777777766 49999999988553    68999999999999999


Q ss_pred             CeEEeeeeccCcCeeEEEEeeCCC
Q 024868          234 WNKIGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~dg~  257 (261)
                      ++.+..+...+..+..+.|+|..-
T Consensus       286 gEvl~~~p~~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  286 GEVLGELPAQGNWCFDVQWCPRNP  309 (1049)
T ss_pred             ceEeeecCCCCcceeeeeecCCCc
Confidence            999998888888999999999765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=6.5e-22  Score=143.07  Aligned_cols=189  Identities=16%  Similarity=0.255  Sum_probs=148.6

Q ss_pred             eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc--CCe
Q 024868           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~  135 (261)
                      .++...+.|.++.|+++|..+++++.|.++++||..++.....+.       .++-.+..++|-.....++.++.  |.+
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-------skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-------SKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-------cccccccEEEEecCCceEEEccCCCCCc
Confidence            455567889999999999999999999999999999887622211       12345677788776666666664  889


Q ss_pred             EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      |+..++.+.+.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+....   -..++|+|+|-.    
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLi----  154 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLI----  154 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcE----
Confidence            9999999999999999999999999999999999999999999999999888776665332   335789999976    


Q ss_pred             EEEeeCCCcEEEEEECCCCe--EEeeeec---cCcCeeEEEEeeCCCEEeC
Q 024868          216 CTVQRGDKALLAVYDISTWN--KIGHKRL---LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       216 ~~~~~~~d~~i~~~d~~~~~--~~~~~~~---~~~~v~~~~~s~dg~~la~  261 (261)
                       ++.+.....|++||++...  +...+..   .......+.|||||++|++
T Consensus       155 -fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl  204 (311)
T KOG1446|consen  155 -FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL  204 (311)
T ss_pred             -EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence             3555555599999998652  3333332   2467889999999999863

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.8e-22  Score=162.19  Aligned_cols=221  Identities=12%  Similarity=0.160  Sum_probs=170.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      +.+|++++-..     +.+++|+.++        .+..|.......      .-.+...+-++.+++|+-+|+++|.|+.
T Consensus        56 g~~v~~ia~~s-----~~f~~~s~~~--------tv~~y~fps~~~------~~iL~Rftlp~r~~~v~g~g~~iaagsd  116 (933)
T KOG1274|consen   56 GELVSSIACYS-----NHFLTGSEQN--------TVLRYKFPSGEE------DTILARFTLPIRDLAVSGSGKMIAAGSD  116 (933)
T ss_pred             CceeEEEeecc-----cceEEeeccc--------eEEEeeCCCCCc------cceeeeeeccceEEEEecCCcEEEeecC
Confidence            45566666543     3777887777        555555544432      1123344567999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc--------CC
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--------HK  155 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~  155 (261)
                      |-.|++.+..+...       ......|.++|.++.|+|++.+||+.+.||.|++||+.++.....+..-        ..
T Consensus       117 D~~vK~~~~~D~s~-------~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~  189 (933)
T KOG1274|consen  117 DTAVKLLNLDDSSQ-------EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSR  189 (933)
T ss_pred             ceeEEEEeccccch-------heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccc
Confidence            99999999988764       2334456799999999999999999999999999999887654333211        12


Q ss_pred             ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC-ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      .+..++|+|+|..++..+.|+.|++|+..+++....+...... .+..+.|+|.|+|     +++++.+|.|.|||.++.
T Consensus       190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y-----iAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY-----IAASTLDGQILVWNVDTH  264 (933)
T ss_pred             eeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE-----EeeeccCCcEEEEecccc
Confidence            4678999999888888888999999999999988877654332 3889999999999     799999999999999883


Q ss_pred             eEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          235 NKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                      +.    ......|++++|.|++.-+
T Consensus       265 ~~----~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  265 ER----HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             hh----ccccceeEEEecCCCCCee
Confidence            22    3344688999999987654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.4e-22  Score=141.68  Aligned_cols=207  Identities=14%  Similarity=0.217  Sum_probs=160.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~   81 (261)
                      +|||..++|.. |....++|+++.|+        ++.+|...++.+.    ..+....|...|++++|.|.  |-.|+++
T Consensus        56 ~GPVwqv~wah-Pk~G~iLAScsYDg--------kVIiWke~~g~w~----k~~e~~~h~~SVNsV~wapheygl~Laca  122 (299)
T KOG1332|consen   56 SGPVWKVAWAH-PKFGTILASCSYDG--------KVIIWKEENGRWT----KAYEHAAHSASVNSVAWAPHEYGLLLACA  122 (299)
T ss_pred             CCCeeEEeecc-cccCcEeeEeecCc--------eEEEEecCCCchh----hhhhhhhhcccceeecccccccceEEEEe
Confidence            79999999953 22588999999999        9999988887762    24567789999999999984  6788999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC---C-----------cEEEEeccCCeEEEEEccCce--
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---G-----------SRFAAGGVDGHLRIMHWPSLR--  145 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~d~~i~~~d~~~~~--  145 (261)
                      +.||.|.+.+.+.....    ........|.-.|+++.|.|-   |           +.|++|+.|..|++|+..++.  
T Consensus       123 sSDG~vsvl~~~~~g~w----~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~  198 (299)
T KOG1332|consen  123 SSDGKVSVLTYDSSGGW----TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK  198 (299)
T ss_pred             eCCCcEEEEEEcCCCCc----cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh
Confidence            99999999999876221    111223345677899999985   4           569999999999999988753  


Q ss_pred             EEeeccccCCceeEEEEcCCC----CEEEEecCCCcEEEEEccCC--cEEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868          146 IILDEPKAHKSVLDMDFSLDS----EFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       146 ~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  219 (261)
                      ....+..|.+.|+.++|.|.-    ..||+++.||.+.||..+..  +...++.......++.+.||+.|..     ++.
T Consensus       199 ~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~-----LaV  273 (299)
T KOG1332|consen  199 LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNI-----LAV  273 (299)
T ss_pred             hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccE-----EEE
Confidence            223356777889999999953    47999999999999987632  1222232233456999999999998     688


Q ss_pred             eCCCcEEEEEECC
Q 024868          220 RGDKALLAVYDIS  232 (261)
Q Consensus       220 ~~~d~~i~~~d~~  232 (261)
                      ++.|+.+.+|.-.
T Consensus       274 s~GdNkvtlwke~  286 (299)
T KOG1332|consen  274 SGGDNKVTLWKEN  286 (299)
T ss_pred             ecCCcEEEEEEeC
Confidence            8889999999854

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.5e-22  Score=144.27  Aligned_cols=211  Identities=18%  Similarity=0.196  Sum_probs=161.0

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc------eecCCe---EEeeecCCCCCceEEEECC
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS------VYTSPL---VTYVFDESEGDPMTIAVNP   73 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~---~~~~~~~~~~~v~~~~~~~   73 (261)
                      .+|.|..+...+.  ...++++|+.+|        .+..||.++..      +.....   ....-.+|.-.|..+.|-|
T Consensus        42 HgGsvNsL~id~t--egrymlSGgadg--------si~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP  111 (397)
T KOG4283|consen   42 HGGSVNSLQIDLT--EGRYMLSGGADG--------SIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP  111 (397)
T ss_pred             CCCccceeeeccc--cceEEeecCCCc--------cEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee
Confidence            3566777777665  478999999999        77778876533      111111   1122345777899999999


Q ss_pred             -CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC---CcEEEEeccCCeEEEEEccCceEEee
Q 024868           74 -SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILD  149 (261)
Q Consensus        74 -~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~  149 (261)
                       |.-.+.+++.|.++++||..+-+.        ...+.-.+.|++-+|||-   -.+||+|..+-.|++.|+.+|.....
T Consensus       112 ~DtGmFtssSFDhtlKVWDtnTlQ~--------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~  183 (397)
T KOG4283|consen  112 IDTGMFTSSSFDHTLKVWDTNTLQE--------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT  183 (397)
T ss_pred             ecCceeecccccceEEEeeccccee--------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee
Confidence             666788889999999999998765        334444678888899983   34677888888999999999999888


Q ss_pred             ccccCCceeEEEEcCCCCE-EEEecCCCcEEEEEccCC-cEEEEEeec-------------CCCceEEEEEecCCCcceE
Q 024868          150 EPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDG-VAWTFLTRN-------------SDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       150 ~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~iwd~~~~-~~~~~~~~~-------------~~~~v~~~~~~p~~~~~~~  214 (261)
                      +.+|.+.|.++.|+|...+ |++|+.||.|++||++.. .+...+..|             +.+.+.+++|..++.+   
T Consensus       184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~---  260 (397)
T KOG4283|consen  184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY---  260 (397)
T ss_pred             eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh---
Confidence            8999999999999997765 678999999999999853 333333222             2346899999999999   


Q ss_pred             EEEEeeCCCcEEEEEECCCCeE
Q 024868          215 FCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                        +++.+.|..+++|+..+|+.
T Consensus       261 --l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  261 --LASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             --hhhccCccceEEeecccCcc
Confidence              68889999999999988753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1.9e-23  Score=159.79  Aligned_cols=192  Identities=14%  Similarity=0.193  Sum_probs=156.6

Q ss_pred             cCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEE
Q 024868           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (261)
Q Consensus        60 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~  139 (261)
                      -.|..-|.++.++...+.+.+|+.. .|+|||+.....  +.....+..+.....++++.+.|||+.|++|+.-.++.||
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~--k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGN--KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCC--CCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence            3577778899999888889888654 599999976532  2222234445556889999999999999999999999999


Q ss_pred             EccCceEEeec--cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868          140 HWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (261)
Q Consensus       140 d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~  217 (261)
                      |+.......+.  .......+.++.+||.+..+++..||.|.|||+.+...++.+++|.++ +.|+..++||..     +
T Consensus       493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG-ascIdis~dGtk-----l  566 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISKDGTK-----L  566 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC-ceeEEecCCCce-----e
Confidence            99866543222  222235788999999999999999999999999999999999999885 999999999998     7


Q ss_pred             EeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+|+-|++|+-||+++++.+.. ......|.++..+|++.+||+
T Consensus       567 WTGGlDntvRcWDlregrqlqq-hdF~SQIfSLg~cP~~dWlav  609 (705)
T KOG0639|consen  567 WTGGLDNTVRCWDLREGRQLQQ-HDFSSQIFSLGYCPTGDWLAV  609 (705)
T ss_pred             ecCCCccceeehhhhhhhhhhh-hhhhhhheecccCCCccceee
Confidence            9999999999999999887643 334578899999999999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=3.3e-22  Score=152.88  Aligned_cols=208  Identities=13%  Similarity=0.164  Sum_probs=169.8

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccc
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI   99 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~   99 (261)
                      .++++||..+        .+..||.....+      ...+++|...|+++.++-...+||+++..|.|.|..+.++..  
T Consensus        92 ~y~~sgG~~~--------~Vkiwdl~~kl~------hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--  155 (673)
T KOG4378|consen   92 LYEISGGQSG--------CVKIWDLRAKLI------HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--  155 (673)
T ss_pred             eeeeccCcCc--------eeeehhhHHHHH------hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--
Confidence            4778888877        777788875544      556889999999999999999999999999999999988765  


Q ss_pred             ceeeeeCCCCCC--CCCeEEEEEeeCCcE-EEEeccCCeEEEEEccCceEEeeccccC-CceeEEEEcC-CCCEEEEecC
Q 024868          100 NLLAKKMPPLQD--AGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFSL-DSEFLATTST  174 (261)
Q Consensus       100 ~~~~~~~~~~~~--~~~v~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~-~~~~l~~~~~  174 (261)
                            ...+.+  ...|+-+.|+|..+. |.+++.+|.|.+||+....++......| .+...++|+| +..+|++.+.
T Consensus       156 ------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~  229 (673)
T KOG4378|consen  156 ------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY  229 (673)
T ss_pred             ------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc
Confidence                  333333  245678999997664 5667899999999998777766665544 4789999999 5567889999


Q ss_pred             CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeeeccCcCeeEEEEe
Q 024868          175 DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSIS  253 (261)
Q Consensus       175 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s  253 (261)
                      |..|.+||....+....+...  .|...++|.++|.+     ++.|...|.|..||++..+ ++..+..|...|++++|-
T Consensus       230 Dkki~~yD~~s~~s~~~l~y~--~Plstvaf~~~G~~-----L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq  302 (673)
T KOG4378|consen  230 DKKINIYDIRSQASTDRLTYS--HPLSTVAFSECGTY-----LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ  302 (673)
T ss_pred             cceEEEeecccccccceeeec--CCcceeeecCCceE-----EEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence            999999999977776666533  36899999999998     7899999999999998654 677788999999999998


Q ss_pred             eCC
Q 024868          254 LDG  256 (261)
Q Consensus       254 ~dg  256 (261)
                      |.-
T Consensus       303 ~s~  305 (673)
T KOG4378|consen  303 PSP  305 (673)
T ss_pred             ecc
Confidence            864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=2e-22  Score=148.92  Aligned_cols=201  Identities=13%  Similarity=0.229  Sum_probs=144.4

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEEecC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d   84 (261)
                      .=|.++|+|..  ...+++|...+        .|+.|.+.++.+...   ...+.+|+..|..++|||. ...|++|+-|
T Consensus       213 EGy~LdWSp~~--~g~LlsGDc~~--------~I~lw~~~~g~W~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~D  279 (440)
T KOG0302|consen  213 EGYGLDWSPIK--TGRLLSGDCVK--------GIHLWEPSTGSWKVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCD  279 (440)
T ss_pred             cceeeeccccc--ccccccCcccc--------ceEeeeeccCceeec---CccccccccchhhhccCCccCceEEeeecC
Confidence            34678898842  33455565555        777787777766333   3346679999999999995 5578899999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC---ceEEeeccccCCceeEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~v~~~~  161 (261)
                      |+|+|||++.+....-.     ..-.|.+.|+.+.|+.+-.+||+|+.||+++|||+++   ++++..+.-|..+|+++.
T Consensus       280 gsIrIWDiRs~~~~~~~-----~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsie  354 (440)
T KOG0302|consen  280 GSIRIWDIRSGPKKAAV-----STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIE  354 (440)
T ss_pred             ceEEEEEecCCCcccee-----EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEE
Confidence            99999999988532222     1234567899999999878999999999999999986   445566777888999999


Q ss_pred             EcCC-CCEEEEecCCCcEEEEEccCCc----------------EEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCC
Q 024868          162 FSLD-SEFLATTSTDGSARIWKTEDGV----------------AWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDK  223 (261)
Q Consensus       162 ~s~~-~~~l~~~~~d~~i~iwd~~~~~----------------~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d  223 (261)
                      |+|. ...|++++.|.+|.|||+....                +.+.+..|. ...+..+.|++.-.-+    +++.+.|
T Consensus       355 W~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~----lvsTa~d  430 (440)
T KOG0302|consen  355 WHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGL----LVSTAID  430 (440)
T ss_pred             eccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCe----EEEeccc
Confidence            9994 5578888899999999986211                011111121 1237788899887763    4666677


Q ss_pred             cEEEEE
Q 024868          224 ALLAVY  229 (261)
Q Consensus       224 ~~i~~~  229 (261)
                      | +.||
T Consensus       431 G-fnVf  435 (440)
T KOG0302|consen  431 G-FNVF  435 (440)
T ss_pred             c-eeEE
Confidence            6 4444

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=2.1e-22  Score=150.09  Aligned_cols=174  Identities=11%  Similarity=0.097  Sum_probs=131.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..||+.+.|.+..  .+.+++||+|...      ++|..+.....-. ..-.....+..|...|+++.|+|+|+.|++|+
T Consensus        13 ~~pv~s~dfq~n~--~~~laT~G~D~~i------riW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~   84 (434)
T KOG1009|consen   13 HEPVYSVDFQKNS--LNKLATAGGDKDI------RIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG   84 (434)
T ss_pred             CCceEEEEeccCc--ccceecccCccce------eeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence            5689999998864  4489999888832      5555443221110 11123457889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCcc-----c----cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868           83 TNGGCKLFEVYGGAT-----D----INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~-----~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      .+|.+.+|....-..     .    ............|...+..++|+|++.++++++.|..+++||+..++.......|
T Consensus        85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh  164 (434)
T KOG1009|consen   85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH  164 (434)
T ss_pred             CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence            999999998872111     0    0001111122235688999999999999999999999999999999998888888


Q ss_pred             CCceeEEEEcCCCCEEEEecCCCcEEEEEccC
Q 024868          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (261)
Q Consensus       154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~  185 (261)
                      ...+..++|.|-++++++-+.|...+.+++..
T Consensus       165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             ccccceeecchhhhhhhhhccCcccceeeeee
Confidence            88999999999999999999888777776653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=7.5e-23  Score=152.70  Aligned_cols=226  Identities=15%  Similarity=0.154  Sum_probs=178.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+.|-.+.|-++   ...++.||.|.        .|..|+....+.    .....+.+..+.|+.++|.++++.+++++.
T Consensus       175 ~gev~~v~~l~~---sdtlatgg~Dr--------~Ik~W~v~~~k~----~~~~tLaGs~g~it~~d~d~~~~~~iAas~  239 (459)
T KOG0288|consen  175 EGEVHDVEFLRN---SDTLATGGSDR--------IIKLWNVLGEKS----ELISTLAGSLGNITSIDFDSDNKHVIAASN  239 (459)
T ss_pred             ccccceeEEccC---cchhhhcchhh--------hhhhhhcccchh----hhhhhhhccCCCcceeeecCCCceEEeecC
Confidence            456777888774   35889999988        555565544432    114567778889999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |+.+++|++...+....       ...|.+.|+++.|......+++|+.|.++++||+....+..... ..+.+..+..+
T Consensus       240 d~~~r~Wnvd~~r~~~T-------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~  311 (459)
T KOG0288|consen  240 DKNLRLWNVDSLRLRHT-------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS  311 (459)
T ss_pred             CCceeeeeccchhhhhh-------hcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec
Confidence            99999999998775221       22367899999998877669999999999999999877755443 33456666665


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  243 (261)
                        +..++++..|+.|++||.++..+......+.  .|+++..++++..     +.+++.|.++.+.|+++.+....+...
T Consensus       312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~-----lLsssRDdtl~viDlRt~eI~~~~sA~  382 (459)
T KOG0288|consen  312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLE-----LLSSSRDDTLKVIDLRTKEIRQTFSAE  382 (459)
T ss_pred             --ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCCeE-----EeeecCCCceeeeecccccEEEEeecc
Confidence              5668889999999999999999988887554  5999999999998     677799999999999998877666543


Q ss_pred             C----cCeeEEEEeeCCCEEeC
Q 024868          244 R----KPASVLSISLDGKYLAM  261 (261)
Q Consensus       244 ~----~~v~~~~~s~dg~~la~  261 (261)
                      .    ...+.+.|||++.|+|.
T Consensus       383 g~k~asDwtrvvfSpd~~YvaA  404 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDGSYVAA  404 (459)
T ss_pred             ccccccccceeEECCCCceeee
Confidence            3    45788999999999984

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=2.5e-21  Score=153.20  Aligned_cols=212  Identities=12%  Similarity=0.204  Sum_probs=173.2

Q ss_pred             EEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEE
Q 024868           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL   89 (261)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i   89 (261)
                      +++.+.  +...+++|+.|.        .+..|.......      ...+.+|...|.+++...++. +++|+.|.++++
T Consensus        64 i~y~e~--~~~~l~~g~~D~--------~i~v~~~~~~~P------~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Takv  126 (745)
T KOG0301|consen   64 ICYAES--DKGRLVVGGMDT--------TIIVFKLSQAEP------LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKV  126 (745)
T ss_pred             ceeccc--cCcceEeecccc--------eEEEEecCCCCc------hhhhhccccceeeeecCCcCc-eEecccccceEE
Confidence            555541  244578888888        777887766553      567999999999999888887 999999999999


Q ss_pred             EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEE
Q 024868           90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL  169 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  169 (261)
                      |......         .....|...|..++.-|++ .+++|+.|.+|++|.-  ++.+..+.+|.+.|+.+++-+++ .+
T Consensus       127 W~~~~l~---------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~f  193 (745)
T KOG0301|consen  127 WRIGELV---------YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HF  193 (745)
T ss_pred             ecchhhh---------cccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-Ce
Confidence            9986543         2245577899999999988 8889999999999974  66667788888899999998765 47


Q ss_pred             EEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeE
Q 024868          170 ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV  249 (261)
Q Consensus       170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  249 (261)
                      ++++.||.|++|++ +|+++.++.+|... ++++...+++..     ++++++|+++++|+..  ++.+.+......+++
T Consensus       194 lScsNDg~Ir~w~~-~ge~l~~~~ghtn~-vYsis~~~~~~~-----Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWs  264 (745)
T KOG0301|consen  194 LSCSNDGSIRLWDL-DGEVLLEMHGHTNF-VYSISMALSDGL-----IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWS  264 (745)
T ss_pred             EeecCCceEEEEec-cCceeeeeeccceE-EEEEEecCCCCe-----EEEecCCceEEEeecC--ceEEEEecCccceEE
Confidence            88899999999999 78999999988774 999997777776     6999999999999986  666666666678999


Q ss_pred             EEEeeCCCEEe
Q 024868          250 LSISLDGKYLA  260 (261)
Q Consensus       250 ~~~s~dg~~la  260 (261)
                      +.+-++|..++
T Consensus       265 a~~L~NgDIvv  275 (745)
T KOG0301|consen  265 AKVLLNGDIVV  275 (745)
T ss_pred             EEEeeCCCEEE
Confidence            99888887653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=2.4e-22  Score=149.43  Aligned_cols=199  Identities=12%  Similarity=0.094  Sum_probs=155.1

Q ss_pred             eecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCe
Q 024868           58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGH  135 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~  135 (261)
                      ...+|+++|..++|+| +.+.||+|++|.+|.||++..+.....+.........|...|.-++|+|. .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            5679999999999999 66789999999999999998776544443333334456788999999995 467888999999


Q ss_pred             EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      |.+|++.+++....+. |...|++++|+.||.+|++.+.|..|+|||.++++.+..-..|.+.....+.|-.+|..  +.
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i--~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI--FT  232 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce--ee
Confidence            9999999999876655 88899999999999999999999999999999999999888888777777889999983  33


Q ss_pred             EEEeeCCCcEEEEEECCCCeEEeeee--ccCcCeeEEEEeeCCCEE
Q 024868          216 CTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLDGKYL  259 (261)
Q Consensus       216 ~~~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l  259 (261)
                      +-++...+.++.+||...-+....+.  ...+.|.-.-+.+|.+.|
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~iv  278 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIV  278 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEE
Confidence            34455678899999977544321111  122445555566665544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=5.4e-21  Score=146.41  Aligned_cols=226  Identities=16%  Similarity=0.224  Sum_probs=170.9

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .-|.|++|.++.    -+++|.++|        .|.+|++.+..+      ......|.+.|.++..-.+|..| +|+.|
T Consensus       247 k~Vl~v~F~eng----dviTgDS~G--------~i~Iw~~~~~~~------~k~~~aH~ggv~~L~~lr~Gtll-SGgKD  307 (626)
T KOG2106|consen  247 KFVLCVTFLENG----DVITGDSGG--------NILIWSKGTNRI------SKQVHAHDGGVFSLCMLRDGTLL-SGGKD  307 (626)
T ss_pred             eEEEEEEEcCCC----CEEeecCCc--------eEEEEeCCCceE------EeEeeecCCceEEEEEecCccEe-ecCcc
Confidence            568999999854    588999999        999999977765      33333899999999999999755 59999


Q ss_pred             CcEEEEEEeCCcccc-c--------------------------eeee------eCCCCCCCCCeEEEEEeeCCcEEEEec
Q 024868           85 GGCKLFEVYGGATDI-N--------------------------LLAK------KMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (261)
Q Consensus        85 g~i~i~~~~~~~~~~-~--------------------------~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (261)
                      +.|..||-.-.+... .                          ++..      .+..+.|......++..|+..++++++
T Consensus       308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g  387 (626)
T KOG2106|consen  308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG  387 (626)
T ss_pred             ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence            999999943221100 0                          0000      011122345677888999999999999


Q ss_pred             cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       132 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      .|+.+++|+  ..+.+... .-..++.++.|+|.| .+|.|+..|...+.|.++...+..-. . +.+++.++|+|+|.+
T Consensus       388 qdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~ysp~G~~  461 (626)
T KOG2106|consen  388 QDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVRYSPDGAF  461 (626)
T ss_pred             CcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEEEcCCCCE
Confidence            999999999  44443332 234678999999999 99999999999999999865554444 3 557999999999998


Q ss_pred             ceEEEEEeeCCCcEEEEEECCCCeE-Ee-eeeccCcCeeEEEEeeCCCEEe
Q 024868          212 PFLFCTVQRGDKALLAVYDISTWNK-IG-HKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~~~~-~~-~~~~~~~~v~~~~~s~dg~~la  260 (261)
                           ++.++.|+.|++|.+..... .. .-..+..++..+.||+|+++|.
T Consensus       462 -----lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~  507 (626)
T KOG2106|consen  462 -----LAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV  507 (626)
T ss_pred             -----EEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence                 79999999999999875443 22 2223448999999999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=1.4e-21  Score=141.93  Aligned_cols=241  Identities=16%  Similarity=0.211  Sum_probs=171.3

Q ss_pred             CCCceeeEEEEEee----CCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC---CceEEEECCC
Q 024868            2 EGGGTVTCGSWIKR----PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPS   74 (261)
Q Consensus         2 ~~~~~v~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~   74 (261)
                      ..+..|+..+|.+.    ....+++++.+.+.        -|..||.-++++..    ....-.|.+   ...+++|+||
T Consensus       102 ~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~--------PIh~wdaftG~lra----Sy~~ydh~de~taAhsL~Fs~D  169 (406)
T KOG2919|consen  102 QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ--------PIHLWDAFTGKLRA----SYRAYDHQDEYTAAHSLQFSPD  169 (406)
T ss_pred             ccCCEEEEEEeeeccccCCCccceeeeccccC--------ceeeeecccccccc----chhhhhhHHhhhhheeEEecCC
Confidence            35678999999742    12356777777777        67777877776511    112222333   4578999999


Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceee-eeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccc
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLA-KKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  152 (261)
                      |..|++| ....|++||+........... .........+-+.+++|+| +.+.++.++....+-||.-..+.++..+.+
T Consensus       170 GeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg  248 (406)
T KOG2919|consen  170 GEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG  248 (406)
T ss_pred             CCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc
Confidence            9999886 566799999943322111111 1111223357789999999 566899999888888988777888777778


Q ss_pred             cCCceeEEEEcCCCCEEEEecC-CCcEEEEEccC-CcEEEEEeecCCCceEE--EEEecCCCcceEEEEEeeCCCcEEEE
Q 024868          153 AHKSVLDMDFSLDSEFLATTST-DGSARIWKTED-GVAWTFLTRNSDEKIEL--CRFSKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       153 ~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~v~~--~~~~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                      |.+.|+.++|.++|+.|++|+. |..|..||++. +.++..+..|....-..  ....|++++     +++|+.||.|++
T Consensus       249 h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~-----LasG~tdG~V~v  323 (406)
T KOG2919|consen  249 HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEI-----LASGDTDGSVRV  323 (406)
T ss_pred             cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCce-----eeccCCCccEEE
Confidence            8889999999999999999986 67899999985 44555555544321223  345688887     799999999999


Q ss_pred             EECCC-CeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          229 YDIST-WNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       229 ~d~~~-~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ||+++ +..+..+..+...+..++++|-=..+|
T Consensus       324 wdlk~~gn~~sv~~~~sd~vNgvslnP~mpila  356 (406)
T KOG2919|consen  324 WDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILA  356 (406)
T ss_pred             EecCCCCCcccccccccccccceecCcccceee
Confidence            99998 665666667777888888888654444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.4e-23  Score=165.19  Aligned_cols=183  Identities=17%  Similarity=0.244  Sum_probs=160.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+||-|+.|+++   ..+++.|..+|        .|..||.+....      ...+.+|...+..+.|+|-+.+.+.|+.
T Consensus        70 espIeSl~f~~~---E~Llaagsasg--------tiK~wDleeAk~------vrtLtgh~~~~~sv~f~P~~~~~a~gSt  132 (825)
T KOG0267|consen   70 ESPIESLTFDTS---ERLLAAGSASG--------TIKVWDLEEAKI------VRTLTGHLLNITSVDFHPYGEFFASGST  132 (825)
T ss_pred             CCcceeeecCcc---hhhhcccccCC--------ceeeeehhhhhh------hhhhhccccCcceeeeccceEEeccccc
Confidence            589999999985   67899999999        889999987765      5578999999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |+.+++||.+...+...       .-.|...+..++|+|+|++++.++.|.++++||...++....+..|.+.+..+.|+
T Consensus       133 dtd~~iwD~Rk~Gc~~~-------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h  205 (825)
T KOG0267|consen  133 DTDLKIWDIRKKGCSHT-------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH  205 (825)
T ss_pred             cccceehhhhccCceee-------ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence            99999999986665111       11255678999999999999999999999999999999888888888999999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      |..-++++|+.|+++++||+++.+.+-....... .|.+.+|+|+++.
T Consensus       206 p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~-~v~~~~fn~~~~~  252 (825)
T KOG0267|consen  206 PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD-GVRSLAFNPDGKI  252 (825)
T ss_pred             chhhhhccCCCCceeeeeccceeEEeeccCCccC-CceeeeecCCcee
Confidence            9999999999999999999998888877665544 5999999999997

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.5e-21  Score=141.47  Aligned_cols=224  Identities=12%  Similarity=0.172  Sum_probs=164.0

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      -.|+.|++-   +.++|+|..+|        .+..||..+...      ...+.+|..+|.+++||+||++|++++.|..
T Consensus        26 a~~~~Fs~~---G~~lAvGc~nG--------~vvI~D~~T~~i------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~s   88 (405)
T KOG1273|consen   26 AECCQFSRW---GDYLAVGCANG--------RVVIYDFDTFRI------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWS   88 (405)
T ss_pred             cceEEeccC---cceeeeeccCC--------cEEEEEccccch------hhhhhccccceeEEEecCCCCEeeeecCCce
Confidence            578999984   67999999999        777777776554      4578899999999999999999999999999


Q ss_pred             EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeeccccCC----ceeEEE
Q 024868           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHK----SVLDMD  161 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~v~~~~  161 (261)
                      +.+||+..+..        ...+.-..+|....|+|.. +..++.-.+..-.+.++..+.....-....+    ...+..
T Consensus        89 i~lwDl~~gs~--------l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~  160 (405)
T KOG1273|consen   89 IKLWDLLKGSP--------LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV  160 (405)
T ss_pred             eEEEeccCCCc--------eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence            99999998875        2233346789999999943 3333333444455556554333211111111    233446


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-------
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-------  234 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-------  234 (261)
                      |.+.|+++++|...|.+.++|..+-+++..+.......|..+.++..|+.     ++....|+.|+.|+++.-       
T Consensus       161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~di~~~~r~~  235 (405)
T KOG1273|consen  161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEISDIDDEGRDG  235 (405)
T ss_pred             ccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehhhhcccCccC
Confidence            89999999999999999999999999998887665446999999999998     688889999999998621       


Q ss_pred             eEE--eeeec--cCcCeeEEEEeeCCCEEe
Q 024868          235 NKI--GHKRL--LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       235 ~~~--~~~~~--~~~~v~~~~~s~dg~~la  260 (261)
                      +..  +.++.  ....=.++.||.||.|++
T Consensus       236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~  265 (405)
T KOG1273|consen  236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVC  265 (405)
T ss_pred             CcChhHHHHHHHhhhhhhheeecCCccEEE
Confidence            111  11110  011224688999999885

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.89  E-value=2.8e-21  Score=138.55  Aligned_cols=242  Identities=12%  Similarity=0.141  Sum_probs=177.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-----eE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-----DF   78 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l   78 (261)
                      -.++|.++|+..++....+++|+-..  -..|.++|..+|.++.++...+     .-.|.-+++.+.|.|+..     +|
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~E--e~~Nkvqiv~ld~~s~e~~~~a-----~fd~~YP~tK~~wiPd~~g~~pdlL  116 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIE--EYNNKVQIVQLDEDSGELVEDA-----NFDHPYPVTKLMWIPDSKGVYPDLL  116 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeecc--ccCCeeEEEEEccCCCceeccC-----CCCCCCCccceEecCCccccCcchh
Confidence            35789999998787788999998766  4568899999997777652211     135788999999999763     45


Q ss_pred             EEEecCCcEEEEEEeCCcccc--ceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCce---EEeeccc
Q 024868           79 VCSTTNGGCKLFEVYGGATDI--NLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR---IILDEPK  152 (261)
Q Consensus        79 ~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~  152 (261)
                      |++ .| .+++|.+.......  +......+......+++++.|+. |-++|.+.+-|.+..+||++++.   ...++..
T Consensus       117 ATs-~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA  194 (364)
T KOG0290|consen  117 ATS-SD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA  194 (364)
T ss_pred             hcc-cC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence            543 34 59999997432211  11111112223357899999998 78899999999999999999863   2456678


Q ss_pred             cCCceeEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEEEEee-cC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868          153 AHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (261)
Q Consensus       153 ~~~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~  229 (261)
                      |.++|+.++|..++. .+|+.+.||++++||++.-+.-..+.. .. ..+...++|++.... |+.  ..+.+...|.+.
T Consensus       195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn-ymA--Tf~~dS~~V~iL  271 (364)
T KOG0290|consen  195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN-YMA--TFAMDSNKVVIL  271 (364)
T ss_pred             cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch-HHh--hhhcCCceEEEE
Confidence            888999999998654 789999999999999997665444432 22 346888999987766 332  223344579999


Q ss_pred             ECCCCe-EEeeeeccCcCeeEEEEeeCCC
Q 024868          230 DISTWN-KIGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       230 d~~~~~-~~~~~~~~~~~v~~~~~s~dg~  257 (261)
                      |++... ++..+..|++.|..++|.|..+
T Consensus       272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~  300 (364)
T KOG0290|consen  272 DIRVPCTPVARLRNHQASVNGIAWAPHSS  300 (364)
T ss_pred             EecCCCcceehhhcCcccccceEecCCCC
Confidence            999754 5678889999999999999754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=6.8e-23  Score=150.71  Aligned_cols=167  Identities=14%  Similarity=0.199  Sum_probs=134.1

Q ss_pred             eecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeE
Q 024868           58 VFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  136 (261)
                      .+.-..+.|.++.|+|- -..|+++..|+.|.+||++......+...        .-.-+.++|+|.+-.+++++.|..+
T Consensus       182 smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--------~mRTN~IswnPeafnF~~a~ED~nl  253 (433)
T KOG0268|consen  182 SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL--------TMRTNTICWNPEAFNFVAANEDHNL  253 (433)
T ss_pred             eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee--------eccccceecCccccceeeccccccc
Confidence            34445678999999995 45677777999999999998876433322        2345779999988888999999999


Q ss_pred             EEEEccCceEE-eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868          137 RIMHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       137 ~~~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      +.||++..+.. .....|.+.|.+++|||.|+-+++||.|.+|+||..+.+.....+.......|.++.||.|.++    
T Consensus       254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky----  329 (433)
T KOG0268|consen  254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY----  329 (433)
T ss_pred             eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE----
Confidence            99999876543 3445666789999999999999999999999999999877655444334446999999999999    


Q ss_pred             EEEeeCCCcEEEEEECCCCeEE
Q 024868          216 CTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       216 ~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                       +++|++|+.|++|.....+.+
T Consensus       330 -i~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  330 -IISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             -EEecCCCcceeeeecchhhhc
Confidence             799999999999998765544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.89  E-value=3e-21  Score=140.01  Aligned_cols=232  Identities=14%  Similarity=0.201  Sum_probs=171.5

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..||+|.||+++   ...+|++....        ++.+|...+..+   ....+.+..|...|+.++|+|..++|++++.
T Consensus        10 ~~pitchAwn~d---rt~iAv~~~~~--------evhiy~~~~~~~---w~~~htls~Hd~~vtgvdWap~snrIvtcs~   75 (361)
T KOG1523|consen   10 LEPITCHAWNSD---RTQIAVSPNNH--------EVHIYSMLGADL---WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH   75 (361)
T ss_pred             cCceeeeeecCC---CceEEeccCCc--------eEEEEEecCCCC---ceeceehhhhCcceeEEeecCCCCceeEccC
Confidence            579999999996   56888887776        666665555441   2346789999999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe----eccccCCceeE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL----DEPKAHKSVLD  159 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~v~~  159 (261)
                      |..-++|....+..    ..+....+.+....+++.|+|.++.|++|+..+.|.+|-++....-.    ......+.|.+
T Consensus        76 drnayVw~~~~~~~----WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s  151 (361)
T KOG1523|consen   76 DRNAYVWTQPSGGT----WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS  151 (361)
T ss_pred             CCCccccccCCCCe----eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence            99999999954432    22224445567889999999999999999999999999876544311    12233457999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEccC------------------CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTED------------------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                      ++|+|++-+|++|+.|+..++|...-                  |+.+.++. ...+.+..+.|+|+|..     ++-.+
T Consensus       152 ldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~-----lawv~  225 (361)
T KOG1523|consen  152 LDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNR-----LAWVG  225 (361)
T ss_pred             eeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCE-----eeEec
Confidence            99999999999999999999997531                  22333332 23457999999999998     68888


Q ss_pred             CCcEEEEEECCCCe-EEeeeeccCcCeeEEEEeeCCCEE
Q 024868          222 DKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       222 ~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                      .|..+.+-|..... .+.......-+..++.|-.+...+
T Consensus       226 Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv  264 (361)
T KOG1523|consen  226 HDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVV  264 (361)
T ss_pred             CCCceEEeecCCCchhccchhhccCCceeeEeecCCcee
Confidence            99999999987664 232333333555666665554443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.1e-19  Score=131.33  Aligned_cols=240  Identities=11%  Similarity=0.128  Sum_probs=169.0

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEEEe
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCST   82 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~   82 (261)
                      --|.|+.|.+.   ++.+|+++.|...      +||.++..++.+    ......+.|.+.|..+.|.+  -|+.+|+++
T Consensus        14 DlihdVs~D~~---GRRmAtCSsDq~v------kI~d~~~~s~~W----~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS   80 (361)
T KOG2445|consen   14 DLIHDVSFDFY---GRRMATCSSDQTV------KIWDSTSDSGTW----SCTSSWRAHDGSIWRVVWAHPEFGQVVATCS   80 (361)
T ss_pred             ceeeeeeeccc---CceeeeccCCCcE------EEEeccCCCCce----EEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence            34889999885   5678889888822      444444444544    33567889999999999954  599999999


Q ss_pred             cCCcEEEEEEeCCcc--ccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEe------ecc-
Q 024868           83 TNGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIIL------DEP-  151 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~------~~~-  151 (261)
                      .|+++.||.-.....  ...............+.|+++.|.|  -|-.+++++.||.++||+......+.      .+. 
T Consensus        81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence            999999998743221  1112222223334468899999999  57789999999999999875432211      111 


Q ss_pred             ------ccCCceeEEEEcCC---CCEEEEecCC-----CcEEEEEccCCc----EEEEEeecCCCceEEEEEecCC-Ccc
Q 024868          152 ------KAHKSVLDMDFSLD---SEFLATTSTD-----GSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDG-TKP  212 (261)
Q Consensus       152 ------~~~~~v~~~~~s~~---~~~l~~~~~d-----~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~~-~~~  212 (261)
                            .++.+..|+.|+|.   ..+||.|+.+     +.++||....+.    .+.++..+. .+|++++|.|+- +..
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~-dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT-DPIRDISWAPNIGRSY  239 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC-CcceeeeeccccCCce
Confidence                  23456889999983   5678888866     478899866432    344555444 489999999974 432


Q ss_pred             eEEEEEeeCCCcEEEEEECCCC--------------------eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          213 FLFCTVQRGDKALLAVYDISTW--------------------NKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~--------------------~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+  +++++.|| |+||.++..                    +.+..+..|.+.|..+.|+-.|..|++
T Consensus       240 ~~--lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS  305 (361)
T KOG2445|consen  240 HL--LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS  305 (361)
T ss_pred             ee--EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence            33  68888999 999998731                    224456678899999999999988863

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.2e-20  Score=142.96  Aligned_cols=185  Identities=20%  Similarity=0.208  Sum_probs=151.6

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~  142 (261)
                      .++|.+++-+|+|.+|+.|+..|.+++|.+.++.....       ...|-..|+++.|+-||.+|++|+.||.|.+|++-
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH-------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            47799999999999999988999999999999986221       23455789999999999999999999999999873


Q ss_pred             ---------CceEEeeccccCCceeEEEEcCC--CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          143 ---------SLRIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       143 ---------~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                               +-++...+..|.-+|+++...+.  ..++++++.|.++++||+..|..+.++...  ..+.+++.+|.++.
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp--~si~av~lDpae~~  231 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP--SSIKAVALDPAERV  231 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC--CcceeEEEcccccE
Confidence                     22344455555568999988765  458999999999999999999998888743  45999999999998


Q ss_pred             ceEEEEEeeCCCcEEEEEECCCCe----------------EEeeeeccCc--CeeEEEEeeCCCEEeC
Q 024868          212 PFLFCTVQRGDKALLAVYDISTWN----------------KIGHKRLLRK--PASVLSISLDGKYLAM  261 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~~~----------------~~~~~~~~~~--~v~~~~~s~dg~~la~  261 (261)
                           ++.|+.+|.|.+.++....                .+..+.+|.+  .|++++.+-||..|++
T Consensus       232 -----~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS  294 (476)
T KOG0646|consen  232 -----VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS  294 (476)
T ss_pred             -----EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence                 6889999999998875322                3345556666  8999999999999874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=6.5e-21  Score=137.21  Aligned_cols=183  Identities=17%  Similarity=0.224  Sum_probs=138.3

Q ss_pred             CCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEE
Q 024868           61 ESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (261)
Q Consensus        61 ~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~  139 (261)
                      ...+.|.+++|||. ...+++++.|++|++|+++......     ......+.++|.+++|+.||..+++|+.|+.+++|
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCccc-----chhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence            34678999999994 5556688999999999998743211     12334467899999999999999999999999999


Q ss_pred             EccCceEEeeccccCCceeEEEEcCCCC--EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868          140 HWPSLRIILDEPKAHKSVLDMDFSLDSE--FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (261)
Q Consensus       140 d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~  217 (261)
                      |+.+++. ..+-.|..+|..+.|-+...  .|++|+-|.+|+.||++..+++.++....  .++++..    .+.+   +
T Consensus       100 DL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvYa~Dv----~~pm---~  169 (347)
T KOG0647|consen  100 DLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVYAADV----LYPM---A  169 (347)
T ss_pred             EccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eeeehhc----cCce---e
Confidence            9999965 56777888999999987655  89999999999999999999998887543  3665533    2222   4


Q ss_pred             EeeCCCcEEEEEECCCCeEEee--eeccCcCeeEEEEeeCCCE
Q 024868          218 VQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLDGKY  258 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~s~dg~~  258 (261)
                      +.+..++.|.+|+++.+.....  .......+.+++.-+|+.-
T Consensus       170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~  212 (347)
T KOG0647|consen  170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG  212 (347)
T ss_pred             EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc
Confidence            5566677899999987654321  1223355678887776553

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=2e-21  Score=148.61  Aligned_cols=185  Identities=15%  Similarity=0.161  Sum_probs=150.0

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  144 (261)
                      .-.|++......++++|+..+.|+|||++.+.. .      ...-.|...|+++.++....+||+++..|.|.+..+.++
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~-h------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~  153 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI-H------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK  153 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHH-h------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence            455666666678999999999999999986543 1      222345688999999999999999999999999999888


Q ss_pred             eEEeeccccCC-ceeEEEEcCCCCE-EEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC
Q 024868          145 RIILDEPKAHK-SVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (261)
Q Consensus       145 ~~~~~~~~~~~-~v~~~~~s~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~  222 (261)
                      .....+....+ .++-+.++|..++ |.+++++|.|.+||+....++..+...+.+|...++|+|.+..+    +++.+.
T Consensus       154 ~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l----~vsVG~  229 (673)
T KOG4378|consen  154 QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL----LVSVGY  229 (673)
T ss_pred             ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce----EEEecc
Confidence            76544443323 5789999998775 55788999999999998888888877778899999999999875    588899


Q ss_pred             CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       223 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      |..|.+||.+..+....+ ....+.+.++|+++|.+|+.
T Consensus       230 Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~a  267 (673)
T KOG4378|consen  230 DKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCA  267 (673)
T ss_pred             cceEEEeeccccccccee-eecCCcceeeecCCceEEEe
Confidence            999999999976655433 35678999999999999873

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=5e-21  Score=154.34  Aligned_cols=197  Identities=17%  Similarity=0.170  Sum_probs=164.8

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee---cCCCCCceEEEECCCCCeEEEE
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF---DESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      ..+++++.++   .++..+.|.+.|        .|-.|+...+-.      ...+   +.|.++|++++...-++.++++
T Consensus       449 ~~~~av~vs~---CGNF~~IG~S~G--------~Id~fNmQSGi~------r~sf~~~~ah~~~V~gla~D~~n~~~vsa  511 (910)
T KOG1539|consen  449 INATAVCVSF---CGNFVFIGYSKG--------TIDRFNMQSGIH------RKSFGDSPAHKGEVTGLAVDGTNRLLVSA  511 (910)
T ss_pred             cceEEEEEec---cCceEEEeccCC--------eEEEEEcccCee------ecccccCccccCceeEEEecCCCceEEEc
Confidence            4466666666   578888898888        888898877654      3334   5799999999998888899999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      +.+|.++.||......        ...+.-...+.++..+.....++.+..|-.|+++|..+.+.++.+.+|...|++++
T Consensus       512 ~~~Gilkfw~f~~k~l--------~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~  583 (910)
T KOG1539|consen  512 GADGILKFWDFKKKVL--------KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT  583 (910)
T ss_pred             cCcceEEEEecCCcce--------eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE
Confidence            9999999999987763        33334456778888888888899999999999999999999888999999999999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-cEEEEEECCC
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDIST  233 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-~~i~~~d~~~  233 (261)
                      |||||++|++++.|++|++||+.++.++-.+..  +.++.++.|+|+|.+     +++...| .-|++|--++
T Consensus       584 FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~-----LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  584 FSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDF-----LATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             eCCCCcEEEEeecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCE-----EEEEEecCceEEEEEchh
Confidence            999999999999999999999999999988764  446899999999998     5666655 5699997543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=7.1e-21  Score=138.33  Aligned_cols=227  Identities=11%  Similarity=0.110  Sum_probs=171.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEc----CC--------------------CCcee--------c
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFD----PK--------------------TTSVY--------T   51 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----~~--------------------~~~~~--------~   51 (261)
                      .|.|.|++|++.   ..+++++++|+..      +||.+-    ..                    .....        .
T Consensus       190 ~GSVNsikfh~s---~~L~lTaSGD~ta------HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t  260 (481)
T KOG0300|consen  190 TGSVNSIKFHNS---GLLLLTASGDETA------HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT  260 (481)
T ss_pred             ccceeeEEeccc---cceEEEccCCcch------HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence            578999999995   5678888888754      444311    00                    00000        0


Q ss_pred             CCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEeeCCcEEEEe
Q 024868           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAG  130 (261)
Q Consensus        52 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~  130 (261)
                      ...+...+++|...|.+..|-..|+.+++++.|.+..+||++++..        ...+ .|....+.+.-+|..+++++.
T Consensus       261 iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~--------v~~LtGHd~ELtHcstHptQrLVvTs  332 (481)
T KOG0300|consen  261 IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV--------VNILTGHDSELTHCSTHPTQRLVVTS  332 (481)
T ss_pred             eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce--------eccccCcchhccccccCCcceEEEEe
Confidence            1123457889999999999999999999999999999999999875        3333 345667778889999999999


Q ss_pred             ccCCeEEEEEccCceE-EeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecC
Q 024868          131 GVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKD  208 (261)
Q Consensus       131 ~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~  208 (261)
                      +.|.+.++||++..-. +..+.+|...|+++.|..+. .++++++|.+|++||+++.+ ++.++.  .+.+++.++.+..
T Consensus       333 SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g  409 (481)
T KOG0300|consen  333 SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKG  409 (481)
T ss_pred             ccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecC
Confidence            9999999999985432 34456677789999998765 58899999999999999754 566665  3446999999988


Q ss_pred             CCcceEEEEEeeCCCcEEEEEECCCCeEE----eeeeccCcCeeEEEEeeC
Q 024868          209 GTKPFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLD  255 (261)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~----~~~~~~~~~v~~~~~s~d  255 (261)
                      ++.     ++.-.++..|++||+......    ...++|...|++.+|..+
T Consensus       410 ~~i-----IAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  410 HPI-----IAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             Cce-----EEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence            876     577788899999999755432    234577788999999865

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=1.3e-20  Score=135.07  Aligned_cols=246  Identities=16%  Similarity=0.172  Sum_probs=165.9

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCC-CCCCCCceEEEEEcCCCCceecCC-eEEeeec-CCCCCceEEEECCCCCeEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSR-ASSSPSVLEIFSFDPKTTSVYTSP-LVTYVFD-ESEGDPMTIAVNPSGDDFVC   80 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~   80 (261)
                      .|.|..++=+|.  +..++++...+. ..+.-....||..-..-+.....+ .....+. .+-+.+.|+.|.|++..+++
T Consensus        63 agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas  140 (370)
T KOG1007|consen   63 AGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS  140 (370)
T ss_pred             CcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence            456666666664  355666544322 112222334444322222110111 1112232 45578999999999999988


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeeccccCC-ce
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SV  157 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v  157 (261)
                      -. |..|.+|++.........+. ......+....++-+|+|  |++.+++. .|+++..||+++.+....+...|+ .+
T Consensus       141 m~-dn~i~l~~l~ess~~vaev~-ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~v  217 (370)
T KOG1007|consen  141 MD-DNNIVLWSLDESSKIVAEVL-SSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRV  217 (370)
T ss_pred             ec-cCceEEEEcccCcchheeec-ccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhccee
Confidence            65 77899999987765221111 111222345678889999  78888887 789999999999888777766665 69


Q ss_pred             eEEEEcCCCC-EEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-
Q 024868          158 LDMDFSLDSE-FLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-  234 (261)
Q Consensus       158 ~~~~~s~~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-  234 (261)
                      ..+.|+|+.+ +|+++++||.|+|||.+. ..+++.+..|.. .|+++.|+|....+    +.+++.|..|.+|.+.+- 
T Consensus       218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqL----iLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQL----ILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce-EEEEEEecCccceE----EEecCCCceeEEEeccccc
Confidence            9999999876 578899999999999985 557777777654 89999999988875    688899999999976421 


Q ss_pred             ----------------------------eEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          235 ----------------------------NKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       235 ----------------------------~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                                                  ..+.++..|+..|++++||.-..++
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI  345 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence                                        0123455677889999998754443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=5e-20  Score=132.98  Aligned_cols=223  Identities=12%  Similarity=0.073  Sum_probs=164.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      +--|..+.|+|.   .+.+++++.||        .+..|+.....+      .. .-.|..++.+.+|.++. .+++|+-
T Consensus        13 ~d~IS~v~f~~~---~~~LLvssWDg--------slrlYdv~~~~l------~~-~~~~~~plL~c~F~d~~-~~~~G~~   73 (323)
T KOG1036|consen   13 EDGISSVKFSPS---SSDLLVSSWDG--------SLRLYDVPANSL------KL-KFKHGAPLLDCAFADES-TIVTGGL   73 (323)
T ss_pred             hhceeeEEEcCc---CCcEEEEeccC--------cEEEEeccchhh------hh-heecCCceeeeeccCCc-eEEEecc
Confidence            345889999963   45566666999        777777665543      22 23478899999998754 5889999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      ||.|+.+|+.++..        .....|..++.++.+++....+++|+.|++|++||.+...... .....+.|.++..+
T Consensus        74 dg~vr~~Dln~~~~--------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~  144 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNE--------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVS  144 (323)
T ss_pred             CceEEEEEecCCcc--------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc-ccccCceEEEEecc
Confidence            99999999998874        4455678899999999988899999999999999988644332 23334478888765


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC----eEEe
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----NKIG  238 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~----~~~~  238 (261)
                        |+.|+.|+.|..+.+||+++..... .-.......++++++-|++.-     .+.++-||.|.+=.+...    +.-.
T Consensus       145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-----y~~sSieGRVavE~~d~s~~~~skky  217 (323)
T KOG1036|consen  145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-----YVVSSIEGRVAVEYFDDSEEAQSKKY  217 (323)
T ss_pred             --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-----eEEEeecceEEEEccCCchHHhhhce
Confidence              7789999999999999999765433 222233446999999997776     477888999888665543    1112


Q ss_pred             eeeccC---------cCeeEEEEeeCCCEEeC
Q 024868          239 HKRLLR---------KPASVLSISLDGKYLAM  261 (261)
Q Consensus       239 ~~~~~~---------~~v~~~~~s~dg~~la~  261 (261)
                      .+..|.         .+|.+++|+|--..+|+
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT  249 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT  249 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEeccccceEEe
Confidence            233332         47999999998666663

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.2e-20  Score=137.73  Aligned_cols=232  Identities=14%  Similarity=0.176  Sum_probs=155.4

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCCCceEEEECCC-CCeEEEEec
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPS-GDDFVCSTT   83 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~   83 (261)
                      .+..++|++.   -..++++..|.        .|..||......       ..++ .....|++++|-|. +..|+.|..
T Consensus       100 dlr~~aWhqH---~~~fava~ndd--------vVriy~ksst~p-------t~Lks~sQrnvtclawRPlsaselavgCr  161 (445)
T KOG2139|consen  100 DLRGVAWHQH---IIAFAVATNDD--------VVRIYDKSSTCP-------TKLKSVSQRNVTCLAWRPLSASELAVGCR  161 (445)
T ss_pred             ceeeEeechh---hhhhhhhccCc--------EEEEeccCCCCC-------ceecchhhcceeEEEeccCCcceeeeeec
Confidence            4567899984   55677888888        888888766321       1222 23467999999995 567888888


Q ss_pred             CCcEEEEEEeCCccccce------eeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeeccccCCc
Q 024868           84 NGGCKLFEVYGGATDINL------LAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKS  156 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~  156 (261)
                      .| |.+|...........      ...+....+++.+|++++|++||..+++++ .|..|.+||..++..+.......+.
T Consensus       162 ~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg  240 (445)
T KOG2139|consen  162 AG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG  240 (445)
T ss_pred             ce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence            77 999988654321111      001112223457999999999999999987 5778999999998876555556668


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC---
Q 024868          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---  233 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~---  233 (261)
                      +.-+.|||||.+|.+++-|+..++|+.....-........+ .|...+|+|+|+.++    ++.+..-.++--....   
T Consensus       241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLL----f~~sgsp~lysl~f~~~~~  315 (445)
T KOG2139|consen  241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLL----FACSGSPRLYSLTFDGEDS  315 (445)
T ss_pred             eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEE----EEEcCCceEEEEeecCCCc
Confidence            89999999999999999999999996554332222322333 699999999999842    3333322222111110   


Q ss_pred             ------C-eE---Eee---------eeccCcCeeEEEEeeCCCEEeC
Q 024868          234 ------W-NK---IGH---------KRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       234 ------~-~~---~~~---------~~~~~~~v~~~~~s~dg~~la~  261 (261)
                            + +.   +..         .....+++.+++|.|.|.|||+
T Consensus       316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav  362 (445)
T KOG2139|consen  316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV  362 (445)
T ss_pred             cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence                  0 00   000         0011367889999999999985

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=9.7e-21  Score=135.78  Aligned_cols=241  Identities=15%  Similarity=0.186  Sum_probs=173.1

Q ss_pred             CCCceeeEEEEEeeCCc--ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCC-eEEeeecCCCCCceEEEECC-CCCe
Q 024868            2 EGGGTVTCGSWIKRPEN--VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-LVTYVFDESEGDPMTIAVNP-SGDD   77 (261)
Q Consensus         2 ~~~~~v~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~   77 (261)
                      +.-+|++.+.|.|++.+  ..++|+.+.        .+++|..+.+...+..+. +....-..+..+++++.|+. +-++
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--------~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~  165 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--------FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL  165 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--------eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence            34589999999998743  345665544        237887776555432211 11222344567899999987 7788


Q ss_pred             EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeeccc---c
Q 024868           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPK---A  153 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~  153 (261)
                      +.+++-|.++.|||++.+.. ..   -..+.+.|...|..++|...+ ..||+.+.||.++++|++..+....+.+   .
T Consensus       166 igtSSiDTTCTiWdie~~~~-~~---vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~  241 (364)
T KOG0290|consen  166 IGTSSIDTTCTIWDIETGVS-GT---VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP  241 (364)
T ss_pred             eEeecccCeEEEEEEeeccc-cc---eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence            88999999999999998732 00   013345678999999999865 4788899999999999987664332322   2


Q ss_pred             CCceeEEEEcC-CCCEEEEecCC-CcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868          154 HKSVLDMDFSL-DSEFLATTSTD-GSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       154 ~~~v~~~~~s~-~~~~l~~~~~d-~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      +.+...++|++ |.+++|+-..| ..|.|.|++. ..++.++..|.. .|+.++|.|.....    +.++++|.++-+||
T Consensus       242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~h----ictaGDD~qaliWD  316 (364)
T KOG0290|consen  242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSH----ICTAGDDCQALIWD  316 (364)
T ss_pred             CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCce----eeecCCcceEEEEe
Confidence            44788999988 56778876554 6799999985 567888888876 59999999987764    68999999999999


Q ss_pred             CCCCeE------EeeeeccCcCeeEEEEee-CCCEEe
Q 024868          231 ISTWNK------IGHKRLLRKPASVLSISL-DGKYLA  260 (261)
Q Consensus       231 ~~~~~~------~~~~~~~~~~v~~~~~s~-dg~~la  260 (261)
                      +.+.-.      +. ....++.|..++|++ .+.+++
T Consensus       317 l~q~~~~~~~dPil-ay~a~~EVNqi~Ws~~~~Dwia  352 (364)
T KOG0290|consen  317 LQQMPRENGEDPIL-AYTAGGEVNQIQWSSSQPDWIA  352 (364)
T ss_pred             cccccccCCCCchh-hhhccceeeeeeecccCCCEEE
Confidence            975322      11 122557899999995 355554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=6.6e-21  Score=138.69  Aligned_cols=230  Identities=14%  Similarity=0.131  Sum_probs=166.7

Q ss_pred             ceeeEEEEEeeCC-cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC-CeEEEEe
Q 024868            5 GTVTCGSWIKRPE-NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCST   82 (261)
Q Consensus         5 ~~v~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~   82 (261)
                      ..-|.++|.-+-. ...++|+||..|        .|+++|+...++      ...+.+|.+.|..+.+.|+. +++++++
T Consensus        90 Esfytcsw~yd~~~~~p~la~~G~~G--------vIrVid~~~~~~------~~~~~ghG~sINeik~~p~~~qlvls~S  155 (385)
T KOG1034|consen   90 ESFYTCSWSYDSNTGNPFLAAGGYLG--------VIRVIDVVSGQC------SKNYRGHGGSINEIKFHPDRPQLVLSAS  155 (385)
T ss_pred             cceEEEEEEecCCCCCeeEEeeccee--------EEEEEecchhhh------ccceeccCccchhhhcCCCCCcEEEEec
Confidence            4567889987765 367888898888        999999988877      55688999999999999964 6788999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe--------------
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--------------  148 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~--------------  148 (261)
                      .|..|++|++++..+..-+    -....|...|.++.|+++|.+|++++.|.++.+|++...+...              
T Consensus       156 kD~svRlwnI~~~~Cv~Vf----GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~  231 (385)
T KOG1034|consen  156 KDHSVRLWNIQTDVCVAVF----GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT  231 (385)
T ss_pred             CCceEEEEeccCCeEEEEe----cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCcc
Confidence            9999999999998763222    2334567899999999999999999999999999997322100              


Q ss_pred             --------------eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEc-cCCcE-------------EEEEeecCCCce
Q 024868          149 --------------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVA-------------WTFLTRNSDEKI  200 (261)
Q Consensus       149 --------------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~-~~~~~-------------~~~~~~~~~~~v  200 (261)
                                    ....|...|.|+.|-  |.++++-+-++.|..|.. +-++.             +.++.-... .+
T Consensus       232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~i  308 (385)
T KOG1034|consen  232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DI  308 (385)
T ss_pred             CcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ce
Confidence                          001122345555554  678999888999999987 22222             111221111 24


Q ss_pred             EEE--EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe--ee--eccCcCeeEEEEeeCCCEEe
Q 024868          201 ELC--RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HK--RLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       201 ~~~--~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~--~~--~~~~~~v~~~~~s~dg~~la  260 (261)
                      +-+  +|.|-++.     ++.+...|.+++||++..++..  ++  ......|.+.+||.||..|+
T Consensus       309 Wfirf~~d~~~~~-----la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv  369 (385)
T KOG1034|consen  309 WFIRFAFDPWQKM-----LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILV  369 (385)
T ss_pred             EEEEEeecHHHHH-----HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEE
Confidence            444  45566776     6889999999999999776531  11  12336789999999999876

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=7.3e-21  Score=151.53  Aligned_cols=229  Identities=11%  Similarity=0.104  Sum_probs=182.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC---CCCeEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGDDFVC   80 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~   80 (261)
                      ..-+.|++.+|+   ...+|+|...|        .+.+|+..+...      ...+..|...|.|+.|+.   ..++|++
T Consensus       459 r~G~R~~~vSp~---gqhLAsGDr~G--------nlrVy~Lq~l~~------~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  459 RFGFRALAVSPD---GQHLASGDRGG--------NLRVYDLQELEY------TCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             ccceEEEEECCC---cceecccCccC--------ceEEEEehhhhh------hhheecccceeEEEeecCchhhhHhhhh
Confidence            456889999996   66899998888        888888877665      556889999999999985   3568899


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC--cEEEEeccCCeEEEEEccCceEEeecccc-----
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMHWPSLRIILDEPKA-----  153 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----  153 (261)
                      ++.|.-|.+||+...-...      ...-.|...|+++.|...|  ..+++++.|..|.+--.+....-..+..+     
T Consensus       522 asrdRlIHV~Dv~rny~l~------qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~  595 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLV------QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS  595 (1080)
T ss_pred             ccCCceEEEEecccccchh------hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence            9999999999997553211      2223456899999999877  77889989987764332211111122222     


Q ss_pred             CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC--CceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      +..++.|+..|..+++++++.|..|+|||+.+|+..+.+++.++  +..-.+...|.|-|     +++...|.++.+||.
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-----~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-----LATSCSDKTLCFVDF  670 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE-----EEEeecCCceEEEEe
Confidence            23689999999999999999999999999999999999986442  24556788999998     799999999999999


Q ss_pred             CCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          232 STWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      -+|+++..+.+|...|+.+.|.+|-+.|+
T Consensus       671 ~sgEcvA~m~GHsE~VTG~kF~nDCkHlI  699 (1080)
T KOG1408|consen  671 VSGECVAQMTGHSEAVTGVKFLNDCKHLI  699 (1080)
T ss_pred             ccchhhhhhcCcchheeeeeecccchhhe
Confidence            99999999999999999999999998875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.87  E-value=2.3e-20  Score=147.80  Aligned_cols=219  Identities=13%  Similarity=0.149  Sum_probs=174.8

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceE-EEECC-CCCeEEEEe
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT-IAVNP-SGDDFVCST   82 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~   82 (261)
                      ..|..++..+    ...++.++.++        ++..|+...+.+    .....+.+|.+-|.. +++-+ ++-++++|+
T Consensus        15 ~DVr~v~~~~----~~~i~s~sRd~--------t~~vw~~~~~~~----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~   78 (745)
T KOG0301|consen   15 SDVRAVAVTD----GVCIISGSRDG--------TVKVWAKKGKQY----LETHAFEGPKGFIANSICYAESDKGRLVVGG   78 (745)
T ss_pred             cchheeEecC----CeEEeecCCCC--------ceeeeeccCccc----ccceecccCcceeeccceeccccCcceEeec
Confidence            3455555544    33678888888        788888877664    223556777777766 88875 555699999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .|+.+.+|......+       ......|...|.++....++. +++|+.|.++++|-.  ++....+.+|...|+++..
T Consensus        79 ~D~~i~v~~~~~~~P-------~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~  148 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEP-------LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVAS  148 (745)
T ss_pred             ccceEEEEecCCCCc-------hhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeee
Confidence            999999999988765       122334668899888777777 899999999999975  4444557888889999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      -|++ .+++|+.|..|++|.-  ++.++++.+|.+ -|+.+++-|++.+      +++++||.|++|++ +|+.+..+.+
T Consensus       149 l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD-~VRgL~vl~~~~f------lScsNDg~Ir~w~~-~ge~l~~~~g  217 (745)
T KOG0301|consen  149 LPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTD-CVRGLAVLDDSHF------LSCSNDGSIRLWDL-DGEVLLEMHG  217 (745)
T ss_pred             cCCC-cEEeccCcceeeeccC--Cchhhhhccchh-heeeeEEecCCCe------EeecCCceEEEEec-cCceeeeeec
Confidence            9887 7899999999999985  788899999877 5999999999885      89999999999999 6788888999


Q ss_pred             cCcCeeEEEEeeCCCEEe
Q 024868          243 LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la  260 (261)
                      |...+.+++..+++..++
T Consensus       218 htn~vYsis~~~~~~~Iv  235 (745)
T KOG0301|consen  218 HTNFVYSISMALSDGLIV  235 (745)
T ss_pred             cceEEEEEEecCCCCeEE
Confidence            999999999766666654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=5.3e-20  Score=137.05  Aligned_cols=210  Identities=10%  Similarity=0.153  Sum_probs=161.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecC-CeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS-PLVTYVFDESEGDPMTIAVNPS-GDDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~   81 (261)
                      .+||..++|+|-  +.+.||+|+.|.        ++.+|......+... ......+.+|...|.-++|+|. .+.|+++
T Consensus        81 t~~vLDi~w~Pf--nD~vIASgSeD~--------~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen   81 TAPVLDIDWCPF--NDCVIASGSEDT--------KVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             cccccccccCcc--CCceeecCCCCc--------eEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence            589999999997  488999999999        777777655443322 2345679999999999999995 5678899


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC-ceeEE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDM  160 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~  160 (261)
                      +.|.+|.+|++.++..        ...+.|...|.++.|+.||.++++.+.|..|++||.++++.+..-..|.+ .-...
T Consensus       151 g~Dn~v~iWnv~tgea--------li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra  222 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEA--------LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA  222 (472)
T ss_pred             cCCceEEEEeccCCce--------eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence            9999999999999985        34455889999999999999999999999999999999998877766665 34556


Q ss_pred             EEcCCCCEEEEec---CCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          161 DFSLDSEFLATTS---TDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       161 ~~s~~~~~l~~~~---~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      .|-.+|.++-+|.   .+.++-+||..+-+ ++..........|.-.-|.||.+.+|    +.|-.|+.|+-|.+....
T Consensus       223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY----l~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY----LCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             EEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE----EEecCCcceEEEEecCCC
Confidence            6888888444443   26789999977533 22222222333476667888888754    567789999999997655

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=7.2e-20  Score=145.06  Aligned_cols=230  Identities=10%  Similarity=0.139  Sum_probs=168.0

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .-|+.++|.|+.  ..+++.++.          +++.||++.+.+      ...+++|.+.|++++|+.||+++++|+.|
T Consensus        13 hci~d~afkPDG--sqL~lAAg~----------rlliyD~ndG~l------lqtLKgHKDtVycVAys~dGkrFASG~aD   74 (1081)
T KOG1538|consen   13 HCINDIAFKPDG--TQLILAAGS----------RLLVYDTSDGTL------LQPLKGHKDTVYCVAYAKDGKRFASGSAD   74 (1081)
T ss_pred             cchheeEECCCC--ceEEEecCC----------EEEEEeCCCccc------ccccccccceEEEEEEccCCceeccCCCc
Confidence            457889999874  556666655          899999998886      67899999999999999999999999999


Q ss_pred             CcEEEEEEeCCcccc-----------------ce----------eeee---CCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           85 GGCKLFEVYGGATDI-----------------NL----------LAKK---MPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        85 g~i~i~~~~~~~~~~-----------------~~----------~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      ..+.+|+-.-.....                 .+          ....   ........++.+++|..||++++.|-.+|
T Consensus        75 K~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nG  154 (1081)
T KOG1538|consen   75 KSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNG  154 (1081)
T ss_pred             eeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCc
Confidence            999999875332100                 00          0000   01111235788999999999999999999


Q ss_pred             eEEEEEccCceEEeecc---ccCCceeEEEEcCCC-----CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEe
Q 024868          135 HLRIMHWPSLRIILDEP---KAHKSVLDMDFSLDS-----EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  206 (261)
                      +|.+-+- +++....+.   +.+++|++++|+|..     ..++...-..++.++.+. |+.+..-.. .+....++.+.
T Consensus       155 TIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~-L~FdP~CisYf  231 (1081)
T KOG1538|consen  155 TISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA-LNFDPCCISYF  231 (1081)
T ss_pred             eEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc-CCCCchhheec
Confidence            9999863 444322222   244589999999953     356666666777777764 444432221 12236788999


Q ss_pred             cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      |+|.+     +..|+.|+.+++|-. .|-.+.+.......|+.++..|+++++++
T Consensus       232 ~NGEy-----~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~  280 (1081)
T KOG1538|consen  232 TNGEY-----ILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVV  280 (1081)
T ss_pred             cCCcE-----EEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEE
Confidence            99998     678899999999974 46677777777789999999999998763

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=4.4e-19  Score=136.09  Aligned_cols=223  Identities=16%  Similarity=0.193  Sum_probs=166.5

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEECCCCCeEEEEec
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..|..++|+|..  .+++++.| .+        +++.|++.++.+..   ..-.++++ ...|.|++|.++|+ +++|..
T Consensus       201 e~v~~a~FHPtd--~nliit~G-k~--------H~~Fw~~~~~~l~k---~~~~fek~ekk~Vl~v~F~engd-viTgDS  265 (626)
T KOG2106|consen  201 EVVFLATFHPTD--PNLIITCG-KG--------HLYFWTLRGGSLVK---RQGIFEKREKKFVLCVTFLENGD-VITGDS  265 (626)
T ss_pred             ceEEEEEeccCC--CcEEEEeC-Cc--------eEEEEEccCCceEE---EeeccccccceEEEEEEEcCCCC-EEeecC
Confidence            456778899973  56666543 44        79999998877632   12233333 35799999999997 778999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-----------E-----
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-----------I-----  147 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-----------~-----  147 (261)
                      +|.|.||+..+.+..       .....|.+.|.++..-.+|.++- |+.|+.|..||-.-.+.           +     
T Consensus       266 ~G~i~Iw~~~~~~~~-------k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e  337 (626)
T KOG2106|consen  266 GGNILIWSKGTNRIS-------KQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE  337 (626)
T ss_pred             CceEEEEeCCCceEE-------eEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEec
Confidence            999999999665531       11226789999999999997655 99999999998321100           0     


Q ss_pred             ------------------------eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868          148 ------------------------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (261)
Q Consensus       148 ------------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  203 (261)
                                              .....|......++.+|+...+++++.|+.+++|+  ..+++.+..  ...++.++
T Consensus       338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~~~  413 (626)
T KOG2106|consen  338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAECA  413 (626)
T ss_pred             CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE--ecCceeEe
Confidence                                    11123445678899999999999999999999999  445554443  34468999


Q ss_pred             EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .|+|.| .     ++.+...|...+.|.++...+. +.....+++.++|+|||.+||+
T Consensus       414 ~fhpsg-~-----va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~~lAv  464 (626)
T KOG2106|consen  414 DFHPSG-V-----VAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGAFLAV  464 (626)
T ss_pred             eccCcc-e-----EEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCCEEEE
Confidence            999999 5     6889999999999999966664 4444889999999999999985

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=1.8e-20  Score=149.37  Aligned_cols=209  Identities=12%  Similarity=0.151  Sum_probs=169.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC--CeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG--DDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~   81 (261)
                      ...|.|+.|+...-...++|+++.++        .|.+||......     ....+.+|...|+++.|..+|  ..++++
T Consensus       501 esEilcLeyS~p~~~~kLLASasrdR--------lIHV~Dv~rny~-----l~qtld~HSssITsvKFa~~gln~~Misc  567 (1080)
T KOG1408|consen  501 ESEILCLEYSFPVLTNKLLASASRDR--------LIHVYDVKRNYD-----LVQTLDGHSSSITSVKFACNGLNRKMISC  567 (1080)
T ss_pred             cceeEEEeecCchhhhHhhhhccCCc--------eEEEEecccccc-----hhhhhcccccceeEEEEeecCCceEEEec
Confidence            56899999977655678999999999        889999866542     245788999999999998776  678898


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC---Ccee
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---KSVL  158 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~v~  158 (261)
                      +.|..+. |+...+.....+....... ..+..+++++..|..+++++++.|+.|+||++.+++....+++.+   +...
T Consensus       568 GADksim-Fr~~qk~~~g~~f~r~t~t-~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI  645 (1080)
T KOG1408|consen  568 GADKSIM-FRVNQKASSGRLFPRHTQT-LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI  645 (1080)
T ss_pred             cCchhhh-eehhccccCceeccccccc-cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence            8888554 4443322112222111111 235678999999999999999999999999999999887776544   4577


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      .+...|.|.|+++...|.++.++|..+|+++.++.+|.. .|+.+.|.+|-++     +++.+.||.|.+|.+..
T Consensus       646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VTG~kF~nDCkH-----lISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVTGVKFLNDCKH-----LISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-heeeeeecccchh-----heeecCCceEEEEECch
Confidence            888999999999999999999999999999999999877 5999999999999     68899999999999863

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=2.6e-20  Score=138.98  Aligned_cols=193  Identities=15%  Similarity=0.194  Sum_probs=145.7

Q ss_pred             CCCceEEEECCCCC-eEEEEecCCcEEEEEEeCCccccc--eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEE
Q 024868           63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (261)
Q Consensus        63 ~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~  139 (261)
                      ..++..+.|.++.. ++++|+.|..|++|.+........  .+.-......|...|+.+.|+|+|..+++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45799999998766 999999999999999987654331  222223334567899999999999999999999999999


Q ss_pred             Ecc--------C-----c---eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868          140 HWP--------S-----L---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (261)
Q Consensus       140 d~~--------~-----~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  203 (261)
                      ...        +     .   ........|...+..++|+|+++++++++.|+.+++||+..|+....+..|.. .+..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-YVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-cccee
Confidence            765        2     1   11223345667899999999999999999999999999999999998887766 49999


Q ss_pred             EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee-------------------cc----CcCeeEEEEeeCCCEEe
Q 024868          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------------LL----RKPASVLSISLDGKYLA  260 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-------------------~~----~~~v~~~~~s~dg~~la  260 (261)
                      +|.|-+++     +++-+.|...+.+.+...+.+....                   .|    ......++|+|||..|+
T Consensus       172 awDpl~qy-----v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  172 AWDPLNQY-----VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             ecchhhhh-----hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            99999998     5666777766666655332221111                   00    12345688999999886


Q ss_pred             C
Q 024868          261 M  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus       247 t  247 (434)
T KOG1009|consen  247 T  247 (434)
T ss_pred             c
Confidence            4

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=6.3e-19  Score=139.37  Aligned_cols=222  Identities=16%  Similarity=0.228  Sum_probs=172.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+.|-.++|.+    ...+.+.+.+|        .|..||+.+.+.      ...+....+.|.+++.+|.+..++.|++
T Consensus        69 drsIE~L~W~e----~~RLFS~g~sg--------~i~EwDl~~lk~------~~~~d~~gg~IWsiai~p~~~~l~Igcd  130 (691)
T KOG2048|consen   69 DRSIESLAWAE----GGRLFSSGLSG--------SITEWDLHTLKQ------KYNIDSNGGAIWSIAINPENTILAIGCD  130 (691)
T ss_pred             CCceeeEEEcc----CCeEEeecCCc--------eEEEEecccCce------eEEecCCCcceeEEEeCCccceEEeecC
Confidence            46688899995    33455566677        899999988764      5567777889999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee----cccc-C---C
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----EPKA-H---K  155 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~-~---~  155 (261)
                      ||.++.++...+.....     .......+++.+++|+|++..|+.|+.||.|++||..++.....    +.+. .   .
T Consensus       131 dGvl~~~s~~p~~I~~~-----r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~  205 (691)
T KOG2048|consen  131 DGVLYDFSIGPDKITYK-----RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPT  205 (691)
T ss_pred             CceEEEEecCCceEEEE-----eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCce
Confidence            99777777766543221     22223368999999999999999999999999999998876541    1111 1   1


Q ss_pred             ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      -|+++.|-.++ .|++|...|.|++||...+..++.+..|.. .|.+++..+++.+     +++++-|+.|..|...+.+
T Consensus       206 iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a-dVl~Lav~~~~d~-----vfsaGvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  206 IVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA-DVLALAVADNEDR-----VFSAGVDPKIIQYSLTTNK  278 (691)
T ss_pred             EEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc-ceeEEEEcCCCCe-----EEEccCCCceEEEEecCCc
Confidence            37777777555 588898899999999999999999888766 5999999999888     6889999999999887653


Q ss_pred             E----EeeeeccCcCeeEEEEeeC
Q 024868          236 K----IGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       236 ~----~~~~~~~~~~v~~~~~s~d  255 (261)
                      .    ......|...+.+++..++
T Consensus       279 ~~wv~~~~r~~h~hdvrs~av~~~  302 (691)
T KOG2048|consen  279 SEWVINSRRDLHAHDVRSMAVIEN  302 (691)
T ss_pred             cceeeeccccCCcccceeeeeecc
Confidence            3    2344567778888887665

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=5.3e-20  Score=138.75  Aligned_cols=204  Identities=15%  Similarity=0.211  Sum_probs=157.8

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEecC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d   84 (261)
                      .|..++|+..  ..+++|+|+.|.        +|..||..+++.      ...+..|.+.|.+++|+| ....|++|+.|
T Consensus       245 avl~Ls~n~~--~~nVLaSgsaD~--------TV~lWD~~~g~p------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D  308 (463)
T KOG0270|consen  245 AVLALSWNRN--FRNVLASGSADK--------TVKLWDVDTGKP------KSSITHHGKKVQTLEWHPYEPSVLLSGSYD  308 (463)
T ss_pred             HHHHHHhccc--cceeEEecCCCc--------eEEEEEcCCCCc------ceehhhcCCceeEEEecCCCceEEEecccc
Confidence            3456677664  478999999999        999999998876      567788999999999999 57789999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCc-eEEeeccccCCceeEEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~  162 (261)
                      +++.+.|.+.....       .....-.+.|..++|.|.. ..++++..||+++-+|+++. ++++....|.++|.++++
T Consensus       309 ~~V~l~D~R~~~~s-------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~  381 (463)
T KOG0270|consen  309 GTVALKDCRDPSNS-------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSV  381 (463)
T ss_pred             ceEEeeeccCcccc-------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEe
Confidence            99999999853321       1122235788999999965 45677779999999999975 788888899999999999


Q ss_pred             cCC-CCEEEEecCCCcEEEEEccCCcEEEEEe--ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          163 SLD-SEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       163 s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                      ++. ..++++++.|+.|++|++...++.....  ...+ ...|+++.|+-...    ++.|+..+.+++||+.+...+
T Consensus       382 n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~----la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  382 NIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFT----LAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cCCCCcceeeccccceEEEEeecCCCCccccccccccc-ceeecccCCCcceE----EEecCccceEEEeecccChhH
Confidence            884 5578899999999999997544422221  1112 35677777776653    578888889999999877654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=1.1e-19  Score=142.91  Aligned_cols=236  Identities=13%  Similarity=0.111  Sum_probs=161.9

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcE
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   87 (261)
                      +.+.|.+.+....+++.+..+|        .|..||.....+..+...-.....|.+.|..+.|-|-...|++++.|.++
T Consensus        53 f~~sFs~~~n~eHiLavadE~G--------~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDG--------GIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             ccccccCCCCccceEEEecCCC--------ceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence            4577888887788999999999        88888877665532212224566799999999999966678999999999


Q ss_pred             EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCce---------------------
Q 024868           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR---------------------  145 (261)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~---------------------  145 (261)
                      +.||++.......     ...+.|...+.+++|.|+ ...|++|+.||.+.|||++-..                     
T Consensus       125 r~Wdvk~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  125 RPWDVKTSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             eeeeeccceeecc-----eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            9999998775221     234667889999999994 5678899999999999985321                     


Q ss_pred             ------EEeeccccCCceeE---EEEcCCCCEEEEecC-CCcEEEEEccCCcEEEEE--------eec--CCCceEEEEE
Q 024868          146 ------IILDEPKAHKSVLD---MDFSLDSEFLATTST-DGSARIWKTEDGVAWTFL--------TRN--SDEKIELCRF  205 (261)
Q Consensus       146 ------~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~--------~~~--~~~~v~~~~~  205 (261)
                            .+.....+...|.+   +.+..|...||+++. |+.|++||++........        ..+  ....+.++..
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l  279 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL  279 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence                  00111122234555   556678889998887 999999999865432221        111  1123667777


Q ss_pred             ecCCCcceEEEEEeeCCCcEEEEEECCCCeE--EeeeeccC--cCeeEEEEeeCCCEEeC
Q 024868          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLR--KPASVLSISLDGKYLAM  261 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~--~~~~~~~~--~~v~~~~~s~dg~~la~  261 (261)
                      ...|.+     +++.+.|+.|++||+.+-..  +..+.++.  ..-..-..+||+.+|+.
T Consensus       280 DssGt~-----L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S  334 (720)
T KOG0321|consen  280 DSSGTY-----LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS  334 (720)
T ss_pred             cCCCCe-----EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence            778888     45566699999999986432  22222221  11122346788888763

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=1.4e-19  Score=129.88  Aligned_cols=217  Identities=13%  Similarity=0.201  Sum_probs=161.5

Q ss_pred             CCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEEecC-------CcEEEEEEeCCccccceee
Q 024868           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTN-------GGCKLFEVYGGATDINLLA  103 (261)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~  103 (261)
                      ..+|.+++..+|.+...+.     ...+..|.+.|..++-+|- .+.|+++..+       ..+.||.+...........
T Consensus        37 K~dNqVhll~~d~e~s~l~-----skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t  111 (370)
T KOG1007|consen   37 KEDNQVHLLRLDSEGSELL-----SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST  111 (370)
T ss_pred             CCcceeEEEEecCccchhh-----hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch
Confidence            4568889999998877652     3456778899999999995 4555555432       2478999875543211000


Q ss_pred             -eeCCCC--CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-eecc-----ccCCceeEEEEcC--CCCEEEEe
Q 024868          104 -KKMPPL--QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEP-----KAHKSVLDMDFSL--DSEFLATT  172 (261)
Q Consensus       104 -~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~-----~~~~~v~~~~~s~--~~~~l~~~  172 (261)
                       .....+  .+.+.+.|+.|.|++..+++. .|..|.+|++..+..+ ..+.     .+....++-+|+|  +|+.+++.
T Consensus       112 lE~v~~Ldteavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt  190 (370)
T KOG1007|consen  112 LECVASLDTEAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT  190 (370)
T ss_pred             hhHhhcCCHHHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence             001111  234689999999999999888 5889999999877652 2221     1233578889999  78888877


Q ss_pred             cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeeeccCcCeeEEE
Q 024868          173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLS  251 (261)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~  251 (261)
                      + |++++.||+++.++...+...++..|+.+.|+|+-+++    ++++++||.|++||.+..+ ++..+..|...|+++.
T Consensus       191 ~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~----lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR  265 (370)
T KOG1007|consen  191 S-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHI----LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR  265 (370)
T ss_pred             C-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEE----EEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence            5 79999999999988888877777789999999998874    6999999999999998655 6778889999999999


Q ss_pred             EeeCCCEE
Q 024868          252 ISLDGKYL  259 (261)
Q Consensus       252 ~s~dg~~l  259 (261)
                      |+|.-..|
T Consensus       266 fn~~hdqL  273 (370)
T KOG1007|consen  266 FNPEHDQL  273 (370)
T ss_pred             ecCccceE
Confidence            99965444

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.8e-20  Score=155.78  Aligned_cols=209  Identities=11%  Similarity=0.144  Sum_probs=161.1

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~   81 (261)
                      ..|+|..+.|++.  ..+++|+|+.+|        +|+.||....+....+-    -....+.|.+++|+.. .+.|+++
T Consensus       115 h~G~V~gLDfN~~--q~nlLASGa~~g--------eI~iWDlnn~~tP~~~~----~~~~~~eI~~lsWNrkvqhILAS~  180 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPF--QGNLLASGADDG--------EILIWDLNKPETPFTPG----SQAPPSEIKCLSWNRKVSHILASG  180 (1049)
T ss_pred             cCCceeeeecccc--CCceeeccCCCC--------cEEEeccCCcCCCCCCC----CCCCcccceEeccchhhhHHhhcc
Confidence            4689999999997  478999999999        99999998755322211    2224578999999874 5678899


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCC---eEEEEEccCceEEeec-cccCCc
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDG---HLRIMHWPSLRIILDE-PKAHKS  156 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~---~i~~~d~~~~~~~~~~-~~~~~~  156 (261)
                      +.+|++.|||++..+....     .........+..++|+|+. ..+++++.|.   .|.+||++.-....+. ..|...
T Consensus       181 s~sg~~~iWDlr~~~pii~-----ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G  255 (1049)
T KOG0307|consen  181 SPSGRAVIWDLRKKKPIIK-----LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG  255 (1049)
T ss_pred             CCCCCceeccccCCCcccc-----cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc
Confidence            9999999999998764222     1122223458899999965 5566665443   5999999865543334 466668


Q ss_pred             eeEEEEcCCC-CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          157 VLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       157 v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      |.++.|++.+ +++++++.|+.|.+|+.++++.+..+... +.++..+.|+|...-+    ++.++-||.|.||.+....
T Consensus       256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~----~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSV----MAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcch----hhhheeccceeeeeeecCC
Confidence            9999999955 89999999999999999999999999874 4479999999988753    4778889999999997654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=2.3e-19  Score=144.44  Aligned_cols=217  Identities=13%  Similarity=0.098  Sum_probs=139.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCC-CCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSS-RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++...+|+|+.   ..++..+.+ +..      +|+.||..++..       ..+....+....++|+|||+.|+.+.
T Consensus       203 ~~~v~~p~wSPDG---~~la~~s~~~~~~------~i~i~dl~tg~~-------~~l~~~~g~~~~~~wSPDG~~La~~~  266 (429)
T PRK01742        203 SQPLMSPAWSPDG---SKLAYVSFENKKS------QLVVHDLRSGAR-------KVVASFRGHNGAPAFSPDGSRLAFAS  266 (429)
T ss_pred             CCccccceEcCCC---CEEEEEEecCCCc------EEEEEeCCCCce-------EEEecCCCccCceeECCCCCEEEEEE
Confidence            4578899999973   344544322 212      788899876542       11222223344789999999988764


Q ss_pred             -cCCcEEEEEEe--CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeeccccCCcee
Q 024868           83 -TNGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVL  158 (261)
Q Consensus        83 -~dg~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~  158 (261)
                       .+|...||.++  ++..  .      ....+...+..+.|+|||+.|+..+ .++...+|+++..........+..  .
T Consensus       267 ~~~g~~~Iy~~d~~~~~~--~------~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~  336 (429)
T PRK01742        267 SKDGVLNIYVMGANGGTP--S------QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--Y  336 (429)
T ss_pred             ecCCcEEEEEEECCCCCe--E------eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--C
Confidence             57776666544  3331  1      1112334567899999999877654 567778887653221112222222  4


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC--CCCeE
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI--STWNK  236 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~--~~~~~  236 (261)
                      ...|+|||++|+..+.++ +.+||+.+++...... ..  ....+.|+|||++     ++.++.++...+|++  .+++.
T Consensus       337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~-----i~~~s~~g~~~~l~~~~~~G~~  407 (429)
T PRK01742        337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF--LDESPSISPNGIM-----IIYSSTQGLGKVLQLVSADGRF  407 (429)
T ss_pred             CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC--CCCCceECCCCCE-----EEEEEcCCCceEEEEEECCCCc
Confidence            678999999998887754 6669999887643322 21  2456789999998     455555676666664  34666


Q ss_pred             EeeeeccCcCeeEEEEeeC
Q 024868          237 IGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~d  255 (261)
                      +..+..+.+.+..++|||-
T Consensus       408 ~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        408 KARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             eEEccCCCCCCCCcccCCC
Confidence            6667777788899999984

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=9.5e-20  Score=140.83  Aligned_cols=176  Identities=15%  Similarity=0.195  Sum_probs=138.4

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  135 (261)
                      +.....|.+.+.+-.|+|||.-|+++++||.|++|.-...-.        ........+|+|++|.|+.+.++.+ ..+.
T Consensus        97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR--------Stl~Q~~~~v~c~~W~p~S~~vl~c-~g~h  167 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR--------STVVQNEESIRCARWAPNSNSIVFC-QGGH  167 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH--------HHHhhcCceeEEEEECCCCCceEEe-cCCe
Confidence            556788999999999999999999999999999998765432        1122335789999999999888887 5667


Q ss_pred             EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      +.+-.+.....+.+...|.+-|.+++|+|...++++|+.|-..+|||.. |+.+..-..| +.+|++++|+|+ +. |  
T Consensus       168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~-ey~ITSva~npd-~~-~--  241 (737)
T KOG1524|consen  168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE-EYAITSVAFNPE-KD-Y--  241 (737)
T ss_pred             EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh-ccceeeeeeccc-cc-e--
Confidence            8888887777777888899999999999999999999999999999964 6666655544 457999999999 43 1  


Q ss_pred             EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       216 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                        +.++. ++++           ......+.|..++||+||..++
T Consensus       242 --~v~S~-nt~R-----------~~~p~~GSifnlsWS~DGTQ~a  272 (737)
T KOG1524|consen  242 --LLWSY-NTAR-----------FSSPRVGSIFNLSWSADGTQAT  272 (737)
T ss_pred             --eeeee-eeee-----------ecCCCccceEEEEEcCCCceee
Confidence              33332 2333           1223346788999999999876

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=3.4e-19  Score=129.32  Aligned_cols=182  Identities=15%  Similarity=0.184  Sum_probs=138.8

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (261)
Q Consensus        66 v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  145 (261)
                      ..++.|++.|.+||+|..+|.+.|||+.+....       .....|..+|.+++||+||++|++++.|..+.+||+..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-------r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-------RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh-------hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence            789999999999999999999999999987641       1222456799999999999999999999999999999998


Q ss_pred             EEeeccccCCceeEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEEEEeecC----CCceEEEEEecCCCcceEEEEEee
Q 024868          146 IILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       146 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                      ... .....++|....|+|..+ ..++.-.+..-.+-++..++.. .+....    +....+..|.+.|++     +++|
T Consensus        99 ~l~-rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~y-----IitG  171 (405)
T KOG1273|consen   99 PLK-RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKY-----IITG  171 (405)
T ss_pred             cee-EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCE-----EEEe
Confidence            654 445678999999999543 3333334445566666543221 121111    112233458999999     7899


Q ss_pred             CCCcEEEEEECCCCeEEeeeeccC-cCeeEEEEeeCCCEEeC
Q 024868          221 GDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAM  261 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~dg~~la~  261 (261)
                      ...|.+.+||..+.+.+..+.... ..|.++.++..|++|++
T Consensus       172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii  213 (405)
T KOG1273|consen  172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII  213 (405)
T ss_pred             cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEE
Confidence            999999999999999887766555 78899999999998863

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=9.3e-20  Score=144.43  Aligned_cols=244  Identities=14%  Similarity=0.131  Sum_probs=175.1

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc-----------eecCCe------E------EeeecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-----------VYTSPL------V------TYVFDES   62 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~~~------~------~~~~~~~   62 (261)
                      -|.+++|.....+..++|+++.|.+.      +||..-+.+..           +...+.      .      ...+.+|
T Consensus       193 WIrsl~f~~~~~~~~~laS~SQD~yI------RiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH  266 (764)
T KOG1063|consen  193 WIRSLAFARLGGDDLLLASSSQDRYI------RIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH  266 (764)
T ss_pred             hhhhhhhhccCCCcEEEEecCCceEE------EEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence            46677787655457788999999844      66665443310           000110      0      1234599


Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc-------------------------------------cccee---
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-------------------------------------DINLL---  102 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-------------------------------------~~~~~---  102 (261)
                      .+.|+++.|+|.+..|++++.|.++.+|.-....-                                     ...+.   
T Consensus       267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~  346 (764)
T KOG1063|consen  267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK  346 (764)
T ss_pred             ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence            99999999999999999999999999998765421                                     00001   


Q ss_pred             -----eeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc------------------------------------
Q 024868          103 -----AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW------------------------------------  141 (261)
Q Consensus       103 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~------------------------------------  141 (261)
                           ........|...|.+++|+|.|.+|++.+.|.+-+++--                                    
T Consensus       347 d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA  426 (764)
T KOG1063|consen  347 DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA  426 (764)
T ss_pred             CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence                 111223345688999999999999999998877666521                                    


Q ss_pred             -----------------------------------------------------cCceE----------------------
Q 024868          142 -----------------------------------------------------PSLRI----------------------  146 (261)
Q Consensus       142 -----------------------------------------------------~~~~~----------------------  146 (261)
                                                                           .++..                      
T Consensus       427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E  506 (764)
T KOG1063|consen  427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE  506 (764)
T ss_pred             cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence                                                                 00000                      


Q ss_pred             -----------EeeccccCCceeEEEEcCCCCEEEEecCCC-----cEEEEEccCCcEEEEEeecCCCceEEEEEecCCC
Q 024868          147 -----------ILDEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (261)
Q Consensus       147 -----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~  210 (261)
                                 +.++.+|.-.|++++.+|+++++|+++...     .|++|+..+...+..+..|.- .|+.++|||||+
T Consensus       507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL-TVT~l~FSpdg~  585 (764)
T KOG1063|consen  507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL-TVTRLAFSPDGR  585 (764)
T ss_pred             HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce-EEEEEEECCCCc
Confidence                       012234555899999999999999988653     599999998888888887765 599999999999


Q ss_pred             cceEEEEEeeCCCcEEEEEECCCCeEE----eeeeccCcCeeEEEEeeCCCEEeC
Q 024868          211 KPFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~----~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +     +++.+.|+++.+|........    .....|..-|++..|+||+.++|+
T Consensus       586 ~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT  635 (764)
T KOG1063|consen  586 Y-----LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT  635 (764)
T ss_pred             E-----EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE
Confidence            9     789999999999998544322    235567788999999999998874

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.1e-18  Score=121.10  Aligned_cols=227  Identities=12%  Similarity=0.081  Sum_probs=154.6

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc----eecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS----VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      .|+.-+|+|.   ..++++|...|        .|..+......    ...........++|.++++.++|.  ..+|+++
T Consensus        12 tvf~qa~sp~---~~~l~agn~~G--------~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~   78 (325)
T KOG0649|consen   12 TVFAQAISPS---KQYLFAGNLFG--------DIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG   78 (325)
T ss_pred             HHHHHhhCCc---ceEEEEecCCC--------eEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec
Confidence            3556678885   66888998888        66666543211    111122344558999999999998  3456665


Q ss_pred             ecCCcEEEEEEeCCccc---cceee---eeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC
Q 024868           82 TTNGGCKLFEVYGGATD---INLLA---KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~---~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  155 (261)
                      + ||.|+-|........   ..++.   +.......-..|+.+-..|...-+++++.|+.++-||+++++..+.+.+|.+
T Consensus        79 g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   79 G-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD  157 (325)
T ss_pred             c-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence            4 599999988654321   11111   1111111234688999999776677777999999999999999889999999


Q ss_pred             ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC---------CceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD---------EKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i  226 (261)
                      .+.++.--.....+++|+.||++++||+++++++..+.....         ..|.++  .-+..+     ++ ++....+
T Consensus       158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edW-----lv-CGgGp~l  229 (325)
T KOG0649|consen  158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDW-----LV-CGGGPKL  229 (325)
T ss_pred             eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCce-----EE-ecCCCce
Confidence            999998855555789999999999999999999888764332         123333  344555     23 4444579


Q ss_pred             EEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868          227 AVYDISTWNKIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~d  255 (261)
                      .+|.+++.+....+. .+.++..+.|-.|
T Consensus       230 slwhLrsse~t~vfp-ipa~v~~v~F~~d  257 (325)
T KOG0649|consen  230 SLWHLRSSESTCVFP-IPARVHLVDFVDD  257 (325)
T ss_pred             eEEeccCCCceEEEe-cccceeEeeeecc
Confidence            999999988775544 3456666666543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=5.3e-19  Score=142.34  Aligned_cols=197  Identities=18%  Similarity=0.209  Sum_probs=131.6

Q ss_pred             eEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCC
Q 024868           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (261)
Q Consensus        37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~  113 (261)
                      .+++.+|.++..       ...+..|...+..++|+|||+.|+..+.+   ..|++||+.++....      ....  .+
T Consensus       184 ~~i~i~d~dg~~-------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------l~~~--~g  248 (429)
T PRK01742        184 YEVRVADYDGFN-------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------VASF--RG  248 (429)
T ss_pred             EEEEEECCCCCC-------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------EecC--CC
Confidence            378888877654       23456677889999999999999887654   369999998764311      1111  12


Q ss_pred             CeEEEEEeeCCcEEEEec-cCCeEE--EEEccCceEEeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCC-cE
Q 024868          114 PQKCLSFSVDGSRFAAGG-VDGHLR--IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VA  188 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~-~d~~i~--~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~-~~  188 (261)
                      ....++|+|||+.|+++. .+|...  +||+.+++. ..+..+...+..+.|+|||+.|+..+ .++..+||++... ..
T Consensus       249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            334689999999888764 577655  456655554 34444555678899999999877655 5688888887532 22


Q ss_pred             EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ...+ .+..   ..+.|+|||++     ++..+.++ +.+||+.+++.......  ....++.|+|||++|++
T Consensus       328 ~~~l-~~~~---~~~~~SpDG~~-----ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~  388 (429)
T PRK01742        328 ASLV-GGRG---YSAQISADGKT-----LVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIY  388 (429)
T ss_pred             eEEe-cCCC---CCccCCCCCCE-----EEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEE
Confidence            2223 2221   45789999998     34444454 66799998875422222  23457889999999873

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=3.8e-20  Score=145.82  Aligned_cols=170  Identities=12%  Similarity=0.171  Sum_probs=133.3

Q ss_pred             CCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEE
Q 024868           63 EGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMH  140 (261)
Q Consensus        63 ~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d  140 (261)
                      ...|+.+.|.| |.++|+++++||.|++|.+..+.........+.....|...|+++.|+| -...|++++.|-+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            45699999999 8889999999999999999887654444333333444678999999999 456889999999999999


Q ss_pred             ccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  219 (261)
                      +++++...++.+|.+.|.+++|||||+.+++.+.||.+++|..++++ ++..-.+..+..-..+.|.-||+++ +.+-+.
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v-iv~Gfd  785 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV-IVVGFD  785 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE-EEeccc
Confidence            99999888889999999999999999999999999999999998764 3433333333334567899999983 222233


Q ss_pred             eCCCcEEEEEECCC
Q 024868          220 RGDKALLAVYDIST  233 (261)
Q Consensus       220 ~~~d~~i~~~d~~~  233 (261)
                      .....+|.+||..+
T Consensus       786 k~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  786 KSSERQVQMYDAQT  799 (1012)
T ss_pred             ccchhhhhhhhhhh
Confidence            34456788888764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=2.4e-18  Score=138.97  Aligned_cols=202  Identities=12%  Similarity=0.093  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec---CCcEEEEEEeCCccccceeeeeCCCCCCCC
Q 024868           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (261)
Q Consensus        37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  113 (261)
                      .+||.+|.++..       ...+..|...+...+|+|||+.|+..+.   +..|++||+.++...  .    .  ....+
T Consensus       182 ~~l~~~d~dg~~-------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--~----l--~~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGAN-------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--L----V--GNFPG  246 (435)
T ss_pred             eEEEEECCCCCC-------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--E----e--ecCCC
Confidence            378888886655       3345667788999999999999988764   367999999876531  1    1  11234


Q ss_pred             CeEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCCc
Q 024868          114 PQKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGV  187 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~  187 (261)
                      .+...+|+|||+.|+.. +.++  .|++||+.+++. ..+..+........|+|||+.|+..+. ++  .|+++|+.+++
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence            56788999999887644 4444  488889877765 344444445677999999998887764 33  68888887665


Q ss_pred             EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .. .+..... .+..+.|+|||+++++  ......+..|.+||+.++... .+. ....+..+.|+|||++|+
T Consensus       326 ~~-~lt~~~~-~~~~~~~SpdG~~ia~--~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~  392 (435)
T PRK05137        326 PR-RISFGGG-RYSTPVWSPRGDLIAF--TKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIM  392 (435)
T ss_pred             eE-EeecCCC-cccCeEECCCCCEEEE--EEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEE
Confidence            54 3333322 3667889999998421  111223357899998665432 232 233567899999999886

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=3.2e-18  Score=137.61  Aligned_cols=218  Identities=12%  Similarity=0.064  Sum_probs=138.9

Q ss_pred             CCceeeEEEEEeeCCcceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      +..++.+.+|+|+.   ..++..+ ..+..      .++.++..+++.       ..+....+.+..++|+|||+.|+..
T Consensus       197 ~~~~~~~p~wSPDG---~~la~~s~~~g~~------~i~i~dl~~G~~-------~~l~~~~~~~~~~~~SPDG~~La~~  260 (429)
T PRK03629        197 SPQPLMSPAWSPDG---SKLAYVTFESGRS------ALVIQTLANGAV-------RQVASFPRHNGAPAFSPDGSKLAFA  260 (429)
T ss_pred             CCCceeeeEEcCCC---CEEEEEEecCCCc------EEEEEECCCCCe-------EEccCCCCCcCCeEECCCCCEEEEE
Confidence            34578899999974   3444322 22211      788888876552       1222333445578999999988865


Q ss_pred             -ecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-C--eEEEEEccCceEEeeccccCC
Q 024868           82 -TTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-G--HLRIMHWPSLRIILDEPKAHK  155 (261)
Q Consensus        82 -~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~  155 (261)
                       +.+|  .|++||+.++...        ....+...+....|+|||+.|+..+.+ +  .|+++|+.+++.. .+.....
T Consensus       261 ~~~~g~~~I~~~d~~tg~~~--------~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~  331 (429)
T PRK03629        261 LSKTGSLNLYVMDLASGQIR--------QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS  331 (429)
T ss_pred             EcCCCCcEEEEEECCCCCEE--------EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC
Confidence             3344  5888898776531        111223456789999999988877643 3  4555576665442 2322333


Q ss_pred             ceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC---CcEEEEE
Q 024868          156 SVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD---KALLAVY  229 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~---d~~i~~~  229 (261)
                      ......|+|||++|+..+.+   ..|.+||+.+++.. .+....  ......|+|||+++     +..+.   ...++++
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG~~i-----~~~s~~~~~~~l~~~  403 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNGTMV-----IYSSSQGMGSVLNLV  403 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCCCEE-----EEEEcCCCceEEEEE
Confidence            45678999999998876543   35888999888754 333221  24567899999983     22222   2357888


Q ss_pred             ECCCCeEEeeeeccCcCeeEEEEee
Q 024868          230 DISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      ++.. +....+..+.+.+..++|+|
T Consensus       404 ~~~G-~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        404 STDG-RFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ECCC-CCeEECccCCCCcCCcccCC
Confidence            8854 44445666777889999997

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=4.8e-18  Score=136.57  Aligned_cols=202  Identities=20%  Similarity=0.193  Sum_probs=133.4

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec---CCcEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  114 (261)
                      +||.+|.++...       ..+..+...+...+|+|||+.|+..+.   +..+++|++.+++..      .....  .+.
T Consensus       180 ~l~~~d~dg~~~-------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~------~l~~~--~~~  244 (429)
T PRK03629        180 ELRVSDYDGYNQ-------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR------QVASF--PRH  244 (429)
T ss_pred             eEEEEcCCCCCC-------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE------EccCC--CCC
Confidence            788888776552       234456678999999999999987543   356899998776531      11111  233


Q ss_pred             eEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-C--cEEEEEccCCcE
Q 024868          115 QKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-G--SARIWKTEDGVA  188 (261)
Q Consensus       115 v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~iwd~~~~~~  188 (261)
                      ...++|+|||+.|+.. ..++  .|++||+++++.. .+..+...+....|+|||+.|+..+.+ +  .|+++|+.+++.
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            4568999999988865 3344  5999999877654 344444567889999999988877654 4  455556666654


Q ss_pred             EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      . .+..... ......|+|||++++.  .........|++||+.+++.. .+.. ........|+|||++|++
T Consensus       324 ~-~lt~~~~-~~~~~~~SpDG~~Ia~--~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~  390 (429)
T PRK03629        324 Q-RITWEGS-QNQDADVSSDGKFMVM--VSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIY  390 (429)
T ss_pred             E-EeecCCC-CccCEEECCCCCEEEE--EEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEE
Confidence            3 3332222 3567889999998321  111122356899999887654 2332 223457899999998873

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.83  E-value=1.9e-18  Score=135.98  Aligned_cols=232  Identities=12%  Similarity=0.115  Sum_probs=162.6

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~   81 (261)
                      ..+.|+.++|.|   ....++.+.+|.        .+..||..+..+..    ...+.+|.+.|.+++|.|. ...|++|
T Consensus        99 H~nAifDl~wap---ge~~lVsasGDs--------T~r~Wdvk~s~l~G----~~~~~GH~~SvkS~cf~~~n~~vF~tG  163 (720)
T KOG0321|consen   99 HKNAIFDLKWAP---GESLLVSASGDS--------TIRPWDVKTSRLVG----GRLNLGHTGSVKSECFMPTNPAVFCTG  163 (720)
T ss_pred             ccceeEeeccCC---CceeEEEccCCc--------eeeeeeeccceeec----ceeecccccccchhhhccCCCcceeec
Confidence            457899999999   467888888888        88999998877622    2357899999999999994 5577899


Q ss_pred             ecCCcEEEEEEeCCcccc-------------------ceee-eeCCCCCCCCCeEE---EEEeeCCcEEEEecc-CCeEE
Q 024868           82 TTNGGCKLFEVYGGATDI-------------------NLLA-KKMPPLQDAGPQKC---LSFSVDGSRFAAGGV-DGHLR  137 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-d~~i~  137 (261)
                      +.||.+.|||+.-.....                   +... .......+...+.+   +.+..|...||+++. |+.|+
T Consensus       164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK  243 (720)
T KOG0321|consen  164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK  243 (720)
T ss_pred             cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence            999999999997554100                   0000 00111122334444   566788889999886 99999


Q ss_pred             EEEccCceEEeec--------cccC---CceeEEEEcCCCCEEEEecCCCcEEEEEccCC--cEEEEEeecCCC--ceEE
Q 024868          138 IMHWPSLRIILDE--------PKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDE--KIEL  202 (261)
Q Consensus       138 ~~d~~~~~~~~~~--------~~~~---~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~--~v~~  202 (261)
                      +||+++.......        ..+.   -.+.++.....|.+|++.+.|+.|+.|++.+-  .++..+.++...  .+. 
T Consensus       244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk-  322 (720)
T KOG0321|consen  244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK-  322 (720)
T ss_pred             EEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee-
Confidence            9999875543221        1221   14667777777888888888999999999853  233333332221  122 


Q ss_pred             EEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE-EeeeeccCcCeeEEEEeeC
Q 024868          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       203 ~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~d  255 (261)
                      -..+||+.+     +++++.|...++|.+.+.+. ...+.+|...|.+++|.|.
T Consensus       323 s~lSpd~~~-----l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  323 SELSPDDCS-----LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             eecCCCCce-----EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            246899998     79999999999999987664 3345677788888888774

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.83  E-value=7.9e-19  Score=135.67  Aligned_cols=206  Identities=18%  Similarity=0.273  Sum_probs=146.5

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEE-----CCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-----NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  112 (261)
                      ++|.|+.....-...++....+++..  ..|=+|     .|.+--++.|-.-|.+.+.|...... .+++...  ....+
T Consensus       145 ~lyv~~~~g~~~~~~pi~k~~y~gt~--P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~-sklfne~--r~i~k  219 (636)
T KOG2394|consen  145 ELYVYSYRGAADLSKPIDKREYKGTS--PTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEV-SKLFNEE--RLINK  219 (636)
T ss_pred             eEEEEEccCcchhccchhhhcccCCC--CceecccccccCCCCcceEEeeccCceEEecchhhHH-HHhhhhc--ccccc
Confidence            45555554332223344444444332  233333     34566788888889899988866332 2212111  11224


Q ss_pred             CCeEEEEEee-CCcEEEEeccCCeEEEEEccC--------------ce--------------EEeeccccCCceeEEEEc
Q 024868          113 GPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS--------------LR--------------IILDEPKAHKSVLDMDFS  163 (261)
Q Consensus       113 ~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~--------------~~--------------~~~~~~~~~~~v~~~~~s  163 (261)
                      ..++++.|-| +...++++-.+|.+++||...              +.              ++..+....+.|...+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            7899999999 445666777899999997521              10              011111223468899999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  243 (261)
                      |||++||+.+.||.++|||..+.+.+..++...++ ..|++|||||++     +++|++|..|.||.+..++.+..-++|
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-LLCvcWSPDGKy-----IvtGGEDDLVtVwSf~erRVVARGqGH  373 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-LLCVCWSPDGKY-----IVTGGEDDLVTVWSFEERRVVARGQGH  373 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHHhhccc-eEEEEEcCCccE-----EEecCCcceEEEEEeccceEEEecccc
Confidence            99999999999999999999998887777766664 999999999999     799999999999999999999888899


Q ss_pred             CcCeeEEEEee
Q 024868          244 RKPASVLSISL  254 (261)
Q Consensus       244 ~~~v~~~~~s~  254 (261)
                      ...|+.++|.|
T Consensus       374 kSWVs~VaFDp  384 (636)
T KOG2394|consen  374 KSWVSVVAFDP  384 (636)
T ss_pred             ccceeeEeecc
Confidence            99999999996

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=1.9e-17  Score=129.48  Aligned_cols=189  Identities=13%  Similarity=0.202  Sum_probs=124.2

Q ss_pred             CCceEEEECCCCCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEc
Q 024868           64 GDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHW  141 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~  141 (261)
                      +.+..++++|++++|++++. ++.+.+|+++........    .....+......++++|+++++++++ .++.|.+||+
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~----~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP----IQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc----eeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence            45778999999999887764 788999999743221111    11122234467789999999886655 6689999999


Q ss_pred             cCceEEee------ccccCCceeEEEEcCCCCEEEEecC-CCcEEEEEccC--Cc--EEEEEeecC-----CCceEEEEE
Q 024868          142 PSLRIILD------EPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTED--GV--AWTFLTRNS-----DEKIELCRF  205 (261)
Q Consensus       142 ~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~--~~--~~~~~~~~~-----~~~v~~~~~  205 (261)
                      .+...+..      ..........+.|+|+|++++++.. ++.|.+||++.  ++  .+..+....     ......+.+
T Consensus       156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~  235 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI  235 (330)
T ss_pred             CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence            76432211      1112235678999999999988775 89999999973  33  233332110     112336889


Q ss_pred             ecCCCcceEEEEEeeCCCcEEEEEECCCCe----EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +|+|+++|    ++...++.|.+|++....    .+..... ......+.++|||++|++
T Consensus       236 ~pdg~~ly----v~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        236 TPDGRHLY----ACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             CCCCCEEE----EecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEE
Confidence            99999832    333557899999986432    2222222 234568999999999874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.83  E-value=2.4e-18  Score=138.72  Aligned_cols=244  Identities=14%  Similarity=0.079  Sum_probs=173.5

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC--CeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG--DDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~   80 (261)
                      -..+|+|++|+|..  .++++.|..+|        +|..||..................|..++..+.|..+.  ..+++
T Consensus       241 ~~s~v~~~~f~p~~--p~ll~gG~y~G--------qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s  310 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFD--PNLLAGGCYNG--------QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFS  310 (555)
T ss_pred             cCCceeEEEeccCC--cceEEeeccCc--------eEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEE
Confidence            35789999999974  78999999999        99999987765421112233455688999999996643  45999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCC-----CCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEcc---Cce-----E
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMP-----PLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP---SLR-----I  146 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~---~~~-----~  146 (261)
                      ++.||.|..|+++.-..+.........     .......+++++|.+ +-..+++|+.+|.|.--.-.   ...     .
T Consensus       311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~  390 (555)
T KOG1587|consen  311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG  390 (555)
T ss_pred             EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence            999999999988766543322221111     112245778999988 56789999999988873322   111     1


Q ss_pred             EeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868          147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (261)
Q Consensus       147 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~  225 (261)
                      ......|.++|..+.++|=+..++..+.|..++||... ...++..+..+.. .+++++|||-..-+    ++++..||.
T Consensus       391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpav----F~~~d~~G~  465 (555)
T KOG1587|consen  391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAV----FATVDGDGN  465 (555)
T ss_pred             cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceE----EEEEcCCCc
Confidence            22344566789999999966655544449999999988 6677776665555 49999999987763    477888999


Q ss_pred             EEEEECCCCe--EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          226 LAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       226 i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      |.+||+....  ++............+.|+++|+.|++
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav  503 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV  503 (555)
T ss_pred             eehhhhhccccCCcccccccccccceeecCCCCcEEEE
Confidence            9999997543  34444444556677889999998874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=8.4e-19  Score=131.62  Aligned_cols=197  Identities=16%  Similarity=0.179  Sum_probs=146.9

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEc-CCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFD-PKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      .+++|+.+   +..+++|+.||        .+.+|+ |....       ......|...|.++.|+|||++|++.+.| .
T Consensus       148 k~vaf~~~---gs~latgg~dg--------~lRv~~~Ps~~t-------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~  208 (398)
T KOG0771|consen  148 KVVAFNGD---GSKLATGGTDG--------TLRVWEWPSMLT-------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-S  208 (398)
T ss_pred             eEEEEcCC---CCEeeeccccc--------eEEEEecCcchh-------hhhhHhhcCccccceeCCCCcEEEEecCC-c
Confidence            57888885   56999999999        777777 44333       33567788999999999999999999999 7


Q ss_pred             EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC---c--EEEEeccCCeEEEEEccCceE-----EeeccccCCc
Q 024868           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG---S--RFAAGGVDGHLRIMHWPSLRI-----ILDEPKAHKS  156 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~--~l~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~  156 (261)
                      .+||+.+++.....     ............+.|+.|+   .  .++.....+.|+.||+.....     ..+....+..
T Consensus       209 ~~VW~~~~g~~~a~-----~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s  283 (398)
T KOG0771|consen  209 ARVWSVNTGAALAR-----KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS  283 (398)
T ss_pred             eEEEEeccCchhhh-----cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence            99999999854221     1112334566778898877   3  333333455677766543221     1222334557


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      |.+++.++||++++.|+.||.|.|++..+-+.++..+..|..-|+.+.|+||.++     +.+.+.+.+..+..+.-
T Consensus       284 iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~-----~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  284 ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY-----LASVSSDNEAAVTKLAV  355 (398)
T ss_pred             ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc-----ccccccCCceeEEEEee
Confidence            9999999999999999999999999999988888777666667999999999998     56677777787777654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.82  E-value=1.5e-18  Score=137.62  Aligned_cols=140  Identities=14%  Similarity=0.183  Sum_probs=110.2

Q ss_pred             CCCCCCeEEEEEeeCCcEEEEeccC-----CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868          109 LQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT  183 (261)
Q Consensus       109 ~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~  183 (261)
                      +.|.-.|++++.+|+++++|+++..     ..|++|+..+-.....+..|.-.|+.++|||||++|++.+.|.++.+|..
T Consensus       522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence            3455679999999999999998744     35999998887777667777779999999999999999999999999987


Q ss_pred             cCCcE----EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC--eEEee--eeccCcCeeEEEEee
Q 024868          184 EDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKIGH--KRLLRKPASVLSISL  254 (261)
Q Consensus       184 ~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~--~~~~~--~~~~~~~v~~~~~s~  254 (261)
                      .....    ....+.|.. -|+++.|+|++.+     +++++.|.+|++|.....  +.+..  ...+...|+.+++.|
T Consensus       602 ~~~~~~e~~fa~~k~HtR-IIWdcsW~pde~~-----FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  602 QEDIKDEFRFACLKAHTR-IIWDCSWSPDEKY-----FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             ecccchhhhhccccccce-EEEEcccCcccce-----eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence            54321    112344444 6999999999998     699999999999999876  43332  224557788888776

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=2.7e-19  Score=135.53  Aligned_cols=195  Identities=15%  Similarity=0.133  Sum_probs=147.8

Q ss_pred             eecCCCCCceEEEECCCC--CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCC
Q 024868           58 VFDESEGDPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG  134 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~  134 (261)
                      ...-+.++|++++|+|..  +.+++|+..|+|-+||+.+.+....   .......|..+|.++.|+| +...+++.+.||
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---ceEEeccCCccccceEecCCChhheeeeccCc
Confidence            455678899999999954  5778888899999999974432111   1123345678999999999 557888999999


Q ss_pred             eEEEEEccCceEE--eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE-EEEEeecCCCceEEEEEecCCCc
Q 024868          135 HLRIMHWPSLRII--LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       135 ~i~~~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      +|++-|++.....  .........+.++.|+.+...++++..=|...+||+++++. ...+..|.. .|.+++++|-..+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~p~  336 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVCPW  336 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCCCCch
Confidence            9999999865432  22222233678899999888888888878999999997664 444555555 6999999999988


Q ss_pred             ceEEEEEeeCCCcEEEEEECCCCeE----EeeeeccCcCeeEEEEeeCCCEEe
Q 024868          212 PFLFCTVQRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +    +++++.|++.+|||++.-..    +-....|...|.+..|||+|-.|+
T Consensus       337 ~----laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~  385 (498)
T KOG4328|consen  337 F----LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL  385 (498)
T ss_pred             h----eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE
Confidence            4    69999999999999985332    223456888999999999876565

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.2e-17  Score=119.60  Aligned_cols=214  Identities=16%  Similarity=0.286  Sum_probs=150.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec---CCeEEeeecCCCCCceEEEECC--CCCe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT---SPLVTYVFDESEGDPMTIAVNP--SGDD   77 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~--~~~~   77 (261)
                      +++.|..+.|.+. +-+..+|+.+.|+        .+.+|.........   .-.....+......|+.+.|.|  -|-.
T Consensus        58 h~~Si~rV~WAhP-EfGqvvA~cS~Dr--------tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk  128 (361)
T KOG2445|consen   58 HDGSIWRVVWAHP-EFGQVVATCSYDR--------TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK  128 (361)
T ss_pred             cCCcEEEEEecCc-cccceEEEEecCC--------ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE
Confidence            4678899999764 4688999999999        44445442222111   1133456667788999999999  4778


Q ss_pred             EEEEecCCcEEEEEEeCCccccc-eeeeeC-----CCCCCCCCeEEEEEeeC---CcEEEEeccC-----CeEEEEEccC
Q 024868           78 FVCSTTNGGCKLFEVYGGATDIN-LLAKKM-----PPLQDAGPQKCLSFSVD---GSRFAAGGVD-----GHLRIMHWPS  143 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~-----~~~~~~~~v~~~~~s~~---~~~l~~~~~d-----~~i~~~d~~~  143 (261)
                      |++++.||.++||+......... .+..++     ..-.+..+..|+.|+|.   ..+|++|+.+     +.++||....
T Consensus       129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence            99999999999999865432110 011111     11224567899999983   4578888655     4788887654


Q ss_pred             ce----EEeeccccCCceeEEEEcCC-C---CEEEEecCCCcEEEEEccCC--------------------cEEEEEeec
Q 024868          144 LR----IILDEPKAHKSVLDMDFSLD-S---EFLATTSTDGSARIWKTEDG--------------------VAWTFLTRN  195 (261)
Q Consensus       144 ~~----~~~~~~~~~~~v~~~~~s~~-~---~~l~~~~~d~~i~iwd~~~~--------------------~~~~~~~~~  195 (261)
                      ..    .+..+..+..+|++++|.|+ |   ..||+++.|| |+||.++..                    +.+..+..|
T Consensus       209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H  287 (361)
T KOG2445|consen  209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH  287 (361)
T ss_pred             CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence            43    34455677789999999995 3   4789999999 999998731                    123334445


Q ss_pred             CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       196 ~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      .. .|+.+.|+-.|..     +++.+.||.+++|...
T Consensus       288 ~~-~VWrv~wNmtGti-----LsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  288 NG-EVWRVRWNMTGTI-----LSSTGDDGCVRLWKAN  318 (361)
T ss_pred             CC-ceEEEEEeeeeeE-----EeecCCCceeeehhhh
Confidence            44 6999999999997     7999999999999864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=9.1e-18  Score=135.08  Aligned_cols=200  Identities=18%  Similarity=0.129  Sum_probs=129.1

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  114 (261)
                      ++|.+|.++..       ...+..+...+.+.+|+|||+.|+..+.+   ..|++||+.++... .     ..  ...+.
T Consensus       177 ~L~~~D~dG~~-------~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~-----l~--~~~g~  241 (427)
T PRK02889        177 QLQISDADGQN-------AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-V-----VA--NFKGS  241 (427)
T ss_pred             EEEEECCCCCC-------ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-E-----ee--cCCCC
Confidence            78888876544       22344567789999999999999877643   35999999877531 1     11  11234


Q ss_pred             eEEEEEeeCCcEEEE-eccCCeEEEE--EccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CCcEEEEEc--cCCcE
Q 024868          115 QKCLSFSVDGSRFAA-GGVDGHLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKT--EDGVA  188 (261)
Q Consensus       115 v~~~~~s~~~~~l~~-~~~d~~i~~~--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~--~~~~~  188 (261)
                      ....+|+|||+.|+. .+.++...+|  |+..+.. ..+..+........|+|||+.|+..+. ++...||.+  .+++.
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~  320 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA  320 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence            567899999998875 5667765555  4444443 344444444567889999998886654 456666654  44443


Q ss_pred             EEEEeecCCCceEEEEEecCCCcceEEEEEeeCC--CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      . .+..... ......|+|||++++    +....  +..|++||+.+++... +.. ......+.|+|||++|+.
T Consensus       321 ~-~lt~~g~-~~~~~~~SpDG~~Ia----~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~  387 (427)
T PRK02889        321 Q-RVTFTGS-YNTSPRISPDGKLLA----YISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILY  387 (427)
T ss_pred             E-EEecCCC-CcCceEECCCCCEEE----EEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEE
Confidence            2 2222222 244678999999832    22222  2379999998877543 322 233467899999998863

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=1.3e-17  Score=134.68  Aligned_cols=199  Identities=19%  Similarity=0.163  Sum_probs=133.0

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  114 (261)
                      +|+.+|.++..       ...+..+...+.+.+|+|||+.|+..+.+   ..|++|++.++...      ....  ..+.
T Consensus       185 ~l~i~D~~g~~-------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~------~l~~--~~g~  249 (433)
T PRK04922        185 ALQVADSDGYN-------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE------LVAS--FRGI  249 (433)
T ss_pred             EEEEECCCCCC-------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE------Eecc--CCCC
Confidence            68888876544       22355567789999999999999987643   46999999776531      1111  1233


Q ss_pred             eEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CCc--EEEEEccCCcE
Q 024868          115 QKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGS--ARIWKTEDGVA  188 (261)
Q Consensus       115 v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~--i~iwd~~~~~~  188 (261)
                      ...++|+|||+.|+.. +.++  .|++||+.+++.. .+..+......++|+|||+.|+..+. ++.  |+++|+.+++.
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            4578999999987643 4444  6999999877653 34444344567899999998887664 444  66777777664


Q ss_pred             EEEEeecCCCceEEEEEecCCCcceEEEEEeeCC--CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .. +..... ....++|+|||++++    +....  ...|.+||+.+++.. .+. +......+.|+|||++|+
T Consensus       329 ~~-lt~~g~-~~~~~~~SpDG~~Ia----~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~  394 (433)
T PRK04922        329 ER-LTFQGN-YNARASVSPDGKKIA----MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVL  394 (433)
T ss_pred             EE-eecCCC-CccCEEECCCCCEEE----EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEE
Confidence            33 322222 345789999999842    22222  337999999887754 233 223455789999999876

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.80  E-value=4.6e-18  Score=131.51  Aligned_cols=144  Identities=17%  Similarity=0.226  Sum_probs=111.2

Q ss_pred             CCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccc----cc---------eee--------eeCCCCCCCCCeEEEEE
Q 024868           63 EGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATD----IN---------LLA--------KKMPPLQDAGPQKCLSF  120 (261)
Q Consensus        63 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~----~~---------~~~--------~~~~~~~~~~~v~~~~~  120 (261)
                      ...|+++.|-|. ...++++-.+|.+++||..-....    ..         +..        +........+.|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            368999999884 345566678999999987422110    00         000        00111112467899999


Q ss_pred             eeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCce
Q 024868          121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI  200 (261)
Q Consensus       121 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  200 (261)
                      +|||++||+.+.||.++|+|..+.+.+..+..-.+...|++|||||++|++|+.|.-|.||.+..++.+..-.+|.. +|
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkS-WV  377 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKS-WV  377 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccc-ce
Confidence            99999999999999999999998877655555567899999999999999999999999999999999988887765 89


Q ss_pred             EEEEEec
Q 024868          201 ELCRFSK  207 (261)
Q Consensus       201 ~~~~~~p  207 (261)
                      ..++|.|
T Consensus       378 s~VaFDp  384 (636)
T KOG2394|consen  378 SVVAFDP  384 (636)
T ss_pred             eeEeecc
Confidence            9999983

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=3.1e-17  Score=132.41  Aligned_cols=222  Identities=12%  Similarity=0.067  Sum_probs=140.1

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE-E
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC-S   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~   81 (261)
                      +..++.+.+|+|+.   ..++..+..+     +.-.++.+|..++..       ..+....+....++|+|||+.|+. .
T Consensus       202 ~~~~v~~p~wSpDg---~~la~~s~~~-----~~~~l~~~dl~~g~~-------~~l~~~~g~~~~~~~SpDG~~l~~~~  266 (433)
T PRK04922        202 SAEPILSPAWSPDG---KKLAYVSFER-----GRSAIYVQDLATGQR-------ELVASFRGINGAPSFSPDGRRLALTL  266 (433)
T ss_pred             CCCccccccCCCCC---CEEEEEecCC-----CCcEEEEEECCCCCE-------EEeccCCCCccCceECCCCCEEEEEE
Confidence            34578888999863   3455443221     012788888876652       223334445568899999998864 3


Q ss_pred             ecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCc
Q 024868           82 TTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKS  156 (261)
Q Consensus        82 ~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~  156 (261)
                      +.+|  .|++||+.++...        ....+......++|+|||++|++.+. ++  .|+++++.+++... +......
T Consensus       267 s~~g~~~Iy~~d~~~g~~~--------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~  337 (433)
T PRK04922        267 SRDGNPEIYVMDLGSRQLT--------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNY  337 (433)
T ss_pred             eCCCCceEEEEECCCCCeE--------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCC
Confidence            4454  5899998876531        11112233467899999998887753 44  37777776665432 2222234


Q ss_pred             eeEEEEcCCCCEEEEecCCC---cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          157 VLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      ...++|+|||++|+..+.++   .|.+||+.+++.. .+... . ....+.|+|||++++.  ....+..+.|+++++..
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~--~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLY--ATREGGRGVLAAVSTDG  412 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEE--EEecCCceEEEEEECCC
Confidence            45789999999998765432   6999999887765 33322 2 2456789999998421  12223345799999865


Q ss_pred             CeEEeeeeccCcCeeEEEEee
Q 024868          234 WNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      + ....+..+.+.+..++|+|
T Consensus       413 ~-~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        413 R-VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             C-ceEEcccCCCCCCCCccCC
Confidence            4 3344555556778888987

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.80  E-value=3.9e-17  Score=116.84  Aligned_cols=159  Identities=15%  Similarity=0.227  Sum_probs=110.6

Q ss_pred             eEEEECCCCCeEEEEec----------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe--ccCC
Q 024868           67 MTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG--GVDG  134 (261)
Q Consensus        67 ~~~~~~~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~  134 (261)
                      ..+.|+|+|++|++-..          -+...+|.++.......     ...+...++|.+++|+|+|+.|++.  ..++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~-----~i~l~~~~~I~~~~WsP~g~~favi~g~~~~   83 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE-----SIELKKEGPIHDVAWSPNGNEFAVIYGSMPA   83 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc-----eeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence            35789999988765433          24566776654432111     2223345679999999999987654  3567


Q ss_pred             eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC---CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      .+.+||++ ++.+..+.  ...+..+.|+|+|+++++++.   .|.+.+||.++.+.+....  +. .+..++|+|||++
T Consensus        84 ~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr~  157 (194)
T PF08662_consen   84 KVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGRY  157 (194)
T ss_pred             ccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCCE
Confidence            89999996 55554443  456788999999999999874   3679999999888877665  23 3789999999998


Q ss_pred             ceEEEEEe---eCCCcEEEEEECCCCeEEee
Q 024868          212 PFLFCTVQ---RGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       212 ~~~~~~~~---~~~d~~i~~~d~~~~~~~~~  239 (261)
                      +..  ..+   -..|+.++||+.. |+.+..
T Consensus       158 ~~t--a~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  158 LAT--ATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EEE--EEeccceeccccEEEEEec-CeEeEe
Confidence            321  111   1247889999985 665543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=7.7e-17  Score=129.76  Aligned_cols=224  Identities=16%  Similarity=0.133  Sum_probs=138.5

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE-
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC-   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-   80 (261)
                      ...++.+.+|+|+.   ..++..+. ++..      .||.+|..++..       ..+....+.+...+|+|||+.|+. 
T Consensus       194 ~~~~v~~p~wSPDG---~~la~~s~~~~~~------~I~~~dl~~g~~-------~~l~~~~g~~~~~~~SPDG~~la~~  257 (427)
T PRK02889        194 SPEPIISPAWSPDG---TKLAYVSFESKKP------VVYVHDLATGRR-------RVVANFKGSNSAPAWSPDGRTLAVA  257 (427)
T ss_pred             CCCCcccceEcCCC---CEEEEEEccCCCc------EEEEEECCCCCE-------EEeecCCCCccceEECCCCCEEEEE
Confidence            35678899999963   44554432 2222      789999877653       223333455678999999998874 


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CCeEEEEEc--cCceEEeeccccCCce
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHW--PSLRIILDEPKAHKSV  157 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~--~~~~~~~~~~~~~~~v  157 (261)
                      .+.+|...+|.++........      ...+........|+|||+.|+..+. ++...+|.+  .+++... +.......
T Consensus       258 ~~~~g~~~Iy~~d~~~~~~~~------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~  330 (427)
T PRK02889        258 LSRDGNSQIYTVNADGSGLRR------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYN  330 (427)
T ss_pred             EccCCCceEEEEECCCCCcEE------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCc
Confidence            566777777766432211111      1112234466889999998887653 455555544  4444322 22122334


Q ss_pred             eEEEEcCCCCEEEEecCCC---cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          158 LDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      ...+|+|||++|+..+.++   .|.+||+.+++... +... . ....+.|+|||+.++.  ....+....+++.++. +
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~-~~~~p~~spdg~~l~~--~~~~~g~~~l~~~~~~-g  404 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-T-RDESPSFAPNGRYILY--ATQQGGRSVLAAVSSD-G  404 (427)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-C-CccCceECCCCCEEEE--EEecCCCEEEEEEECC-C
Confidence            5688999999998776554   69999998887543 3322 2 2467899999998422  1212223457777874 5


Q ss_pred             eEEeeeeccCcCeeEEEEeeC
Q 024868          235 NKIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~d  255 (261)
                      +....+..+.+.+..++|+|-
T Consensus       405 ~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        405 RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CceEEeecCCCCCCCCccCCC
Confidence            544455556677888999873

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=3.3e-16  Score=122.44  Aligned_cols=190  Identities=9%  Similarity=0.108  Sum_probs=123.1

Q ss_pred             CCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEE
Q 024868           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMH  140 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d  140 (261)
                      .+.+..++++|++++|++++ .++.|.+|++..... ....    ......+....++|+|+++++++++ .++.+.+|+
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~----~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~  108 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFA----AESPLPGSPTHISTDHQGRFLFSASYNANCVSVSP  108 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEe----eeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEE
Confidence            45677899999999987664 468899999973221 1111    1111223457899999999888876 478999999


Q ss_pred             ccCceEE---eeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEE-----EEeecCCCceEEEEEecCCCc
Q 024868          141 WPSLRII---LDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWT-----FLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       141 ~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      +.+....   .....+......++++|+++++++++ .++.|.+||+++...+.     ......+...+.++|+|+|++
T Consensus       109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~  188 (330)
T PRK11028        109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY  188 (330)
T ss_pred             ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE
Confidence            8643211   11122233567889999999886554 56999999998633221     111122334788999999998


Q ss_pred             ceEEEEEeeCCCcEEEEEECCC--Ce--EEeeeeccC------cCeeEEEEeeCCCEEeC
Q 024868          212 PFLFCTVQRGDKALLAVYDIST--WN--KIGHKRLLR------KPASVLSISLDGKYLAM  261 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~--~~--~~~~~~~~~------~~v~~~~~s~dg~~la~  261 (261)
                      +|    ++...+++|.+||+..  ++  .+..+...+      .....+.++|||++|++
T Consensus       189 ly----v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv  244 (330)
T PRK11028        189 AY----CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA  244 (330)
T ss_pred             EE----EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence            42    3344578999999973  32  232222211      12346889999998864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=1.1e-17  Score=129.99  Aligned_cols=218  Identities=10%  Similarity=0.097  Sum_probs=159.9

Q ss_pred             EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCC--ceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT--SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      .++|.|.   ...+++++.++        .+-.|+....  .-.....+...+.+|.++|.|+++.++++.+++|+.||+
T Consensus       299 ~l~~~~s---ep~lit~sed~--------~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  299 ALAFHPS---EPVLITASEDG--------TLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             hhhcCCC---CCeEEEecccc--------chhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            3445443   45788888888        5544554221  111233456789999999999999999999999999999


Q ss_pred             EEEEEEeCCcccccee---eeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE----------------
Q 024868           87 CKLFEVYGGATDINLL---AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----------------  147 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~----------------  147 (261)
                      |+.|++..........   .-.-....|.+.+..+++|+....|++++.||++++|+.......                
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence            9999876433211111   011223456788999999998889999999999999986432220                


Q ss_pred             ---------------------------eecc-----c---cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEE
Q 024868          148 ---------------------------LDEP-----K---AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (261)
Q Consensus       148 ---------------------------~~~~-----~---~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  192 (261)
                                                 ..+.     .   ....+..+.++|.+.+.+++..|+.|+++|..+++++...
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~  527 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM  527 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence                                       0000     0   0123566888898899999999999999999999999999


Q ss_pred             eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       193 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  243 (261)
                      ..|... ++++++.|+|.+     +++++.|+.+++|.+.....+.....|
T Consensus       528 ~a~~~s-vtslai~~ng~~-----l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  528 VAHKDS-VTSLAIDPNGPY-----LMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             eeccce-ecceeecCCCce-----EEeecCCceeehhhccchheeeccccc
Confidence            888774 999999999998     799999999999999776655444333

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=1.3e-16  Score=128.98  Aligned_cols=222  Identities=16%  Similarity=0.119  Sum_probs=141.3

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-E
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-C   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~   80 (261)
                      +..++.+.+|+|+.   ..++..+. ++..      .|+.||..++..       ..+..+.+.+...+|+|||+.|+ +
T Consensus       200 ~~~~v~~p~wSpDG---~~lay~s~~~g~~------~i~~~dl~~g~~-------~~l~~~~g~~~~~~~SPDG~~la~~  263 (435)
T PRK05137        200 GSSLVLTPRFSPNR---QEITYMSYANGRP------RVYLLDLETGQR-------ELVGNFPGMTFAPRFSPDGRKVVMS  263 (435)
T ss_pred             CCCCeEeeEECCCC---CEEEEEEecCCCC------EEEEEECCCCcE-------EEeecCCCcccCcEECCCCCEEEEE
Confidence            35688999999974   34444332 2212      899999877652       23455666778899999999876 4


Q ss_pred             EecCCc--EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-C--CeEEEEEccCceEEeeccccCC
Q 024868           81 STTNGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D--GHLRIMHWPSLRIILDEPKAHK  155 (261)
Q Consensus        81 ~~~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~  155 (261)
                      .+.++.  |++||+.++..        .....+........|+|||+.|+..+. +  ..|+++|+..++.. .+.....
T Consensus       264 ~~~~g~~~Iy~~d~~~~~~--------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~  334 (435)
T PRK05137        264 LSQGGNTDIYTMDLRSGTT--------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGG  334 (435)
T ss_pred             EecCCCceEEEEECCCCce--------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCC
Confidence            445554  66777766543        111122334567899999999887763 3  36888887765543 3333344


Q ss_pred             ceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC--cEEEEEE
Q 024868          156 SVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--ALLAVYD  230 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d--~~i~~~d  230 (261)
                      .+....|+|||+.|+....+   ..|.+||+.++.. ..+... . .+..+.|+|||+.++.. ....+..  ..++++|
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~-~~~~~~~~~~~L~~~d  410 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFF-RQTPGSGGAPKLYTVD  410 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEE-EccCCCCCcceEEEEE
Confidence            56778999999999876543   3688888765543 334322 2 36788999999984211 1111211  4789999


Q ss_pred             CCCCeEEeeeeccCcCeeEEEEeeC
Q 024868          231 ISTWNKIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~d  255 (261)
                      +..++.. .+. ..+.+...+|+|-
T Consensus       411 l~g~~~~-~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        411 LTGRNER-EVP-TPGDASDPAWSPL  433 (435)
T ss_pred             CCCCceE-Ecc-CCCCccCcccCCC
Confidence            8766543 333 3445778889873

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=9.8e-16  Score=113.63  Aligned_cols=159  Identities=14%  Similarity=0.191  Sum_probs=124.8

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEE
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMH  140 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d  140 (261)
                      ...|.++.++  .++|+++-++. |+|||+++.+....+..    ..++...+..+.+++.+.+++.-+  ..|.|.+||
T Consensus        87 pt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   87 PTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIET----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             CCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhc----cCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence            3568888885  45677765555 99999999876333211    112334456666666677888754  578999999


Q ss_pred             ccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCc-EEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEE
Q 024868          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS-ARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTV  218 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~  218 (261)
                      ..+-+....+..|.+.+-+++|+++|.+||++++.|+ ||||.+.+|+.+.++.... ...|.+++|+|++++     +.
T Consensus       160 ~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~-----L~  234 (391)
T KOG2110|consen  160 TINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF-----LA  234 (391)
T ss_pred             cccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe-----EE
Confidence            9999988888889999999999999999999999886 8999999999999887543 235889999999998     68


Q ss_pred             eeCCCcEEEEEECCC
Q 024868          219 QRGDKALLAVYDIST  233 (261)
Q Consensus       219 ~~~~d~~i~~~d~~~  233 (261)
                      ..++.++|++|.+++
T Consensus       235 ~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  235 ASSNTETVHIFKLEK  249 (391)
T ss_pred             EecCCCeEEEEEecc
Confidence            888889999999875

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=2.7e-17  Score=127.52  Aligned_cols=167  Identities=12%  Similarity=0.126  Sum_probs=132.4

Q ss_pred             CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC
Q 024868           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (261)
Q Consensus        76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  155 (261)
                      ..++.++.||.+.+.+-...-.        .....|.+.+.+-.|+|||.-|++++.||.|++|. ++|.....+.....
T Consensus        76 d~~~i~s~DGkf~il~k~~rVE--------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARVE--------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEecccchhh--------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc
Confidence            4678888999998887654332        23334678899999999999999999999999998 56655434444456


Q ss_pred             ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      +|+|++|.|+.+.++.+- .+.+.|=.+.....+-.+..|.+ -|.++.|+|.+..     ++++++|-..++||.. |.
T Consensus       147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~l-----I~sgGED~kfKvWD~~-G~  218 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNI-----IASGGEDFRFKIWDAQ-GA  218 (737)
T ss_pred             eeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCc-EEEEeecCccccc-----eeecCCceeEEeeccc-Cc
Confidence            899999999887666653 46788878776666677777765 6999999999998     7999999999999975 56


Q ss_pred             EEeeeeccCcCeeEEEEeeCCCEE
Q 024868          236 KIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                      .+..-..|+.+|++++|.||..|+
T Consensus       219 ~Lf~S~~~ey~ITSva~npd~~~~  242 (737)
T KOG1524|consen  219 NLFTSAAEEYAITSVAFNPEKDYL  242 (737)
T ss_pred             ccccCChhccceeeeeecccccee
Confidence            666677899999999999995554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=2e-17  Score=130.78  Aligned_cols=203  Identities=13%  Similarity=0.166  Sum_probs=147.5

Q ss_pred             EeeecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           56 TYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      .-.+.+|.+.|+.+.|+| +..+|++++.|..++||.+..+.. ..+...+...-...-.+.++.|+|...-|+..+..|
T Consensus        72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~-q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHS-QKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcc-cccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            446788999999999999 555789999999999999984432 221111122222245678999999766666666899


Q ss_pred             eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcce
Q 024868          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~  213 (261)
                      .+++||+.+++.+....+|...|.+..|+.||.+|++++.|.+|+|||.+. +++++....|.+..-..+.|--+-..+ 
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl-  229 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL-  229 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh-
Confidence            999999999999988888889999999999999999999999999999984 678888887776555567776554441 


Q ss_pred             EEEEEeeCCCcEEEEEECCCCe-EEeeeec-cCcCeeEEEEeeCCCEEe
Q 024868          214 LFCTVQRGDKALLAVYDISTWN-KIGHKRL-LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       214 ~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~-~~~~v~~~~~s~dg~~la  260 (261)
                      +.+-+....-..+++||.+... .++++.. ....+.-.-+.||.++|.
T Consensus       230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llf  278 (1012)
T KOG1445|consen  230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLF  278 (1012)
T ss_pred             hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEE
Confidence            1112222344689999998654 3333332 223455566778777654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.6e-17  Score=119.96  Aligned_cols=194  Identities=15%  Similarity=0.239  Sum_probs=142.0

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEEEecCCcEEEEEEeCCc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGA   96 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~   96 (261)
                      ...+|++-+.+        .+..||..++..      ...++++...+..+.|..  ..+.+.+++.||+|++||++...
T Consensus        40 e~~vav~lSng--------sv~lyd~~tg~~------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~  105 (376)
T KOG1188|consen   40 ETAVAVSLSNG--------SVRLYDKGTGQL------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA  105 (376)
T ss_pred             ceeEEEEecCC--------eEEEEeccchhh------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch
Confidence            35688888888        788888887665      456888888999999976  46678999999999999999876


Q ss_pred             cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec----cCCeEEEEEccCceE-Eeecc-ccCCceeEEEEcC-CCCEE
Q 024868           97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----VDGHLRIMHWPSLRI-ILDEP-KAHKSVLDMDFSL-DSEFL  169 (261)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~d~~i~~~d~~~~~~-~~~~~-~~~~~v~~~~~s~-~~~~l  169 (261)
                      .........    ....+..+++.+..++.+++|.    .+-.+.+||++..+. +..+. .|+..|++++|+| +.++|
T Consensus       106 e~a~~~~~~----~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlL  181 (376)
T KOG1188|consen  106 ESARISWTQ----QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLL  181 (376)
T ss_pred             hhhheeccC----CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeE
Confidence            533322111    1124667777777778888875    466799999998776 44333 4667899999999 67899


Q ss_pred             EEecCCCcEEEEEccCCc----EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          170 ATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       170 ~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      ++|+.||-|.+||++...    +..++. + ...|..+.|..++-..    +..-+...+..+|+++.+..
T Consensus       182 lSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~~~~ykr----I~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  182 LSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWLSKKYKR----IMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             EeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeeecCCcce----EEEEEccCceeEEEccCCCh
Confidence            999999999999997542    222222 2 3359999999888211    24445667899999987764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=4e-16  Score=125.13  Aligned_cols=229  Identities=16%  Similarity=0.117  Sum_probs=139.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+++..-+|+|+.....++.+...++..      .||..+..++..       ..+....+.....+|+|||+.|+..+.
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~------~I~~~~l~~g~~-------~~lt~~~g~~~~p~wSPDG~~Laf~s~  250 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVP------KIFLGSLENPAG-------KKILALQGNQLMPTFSPRKKLLAFISD  250 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCc------eEEEEECCCCCc-------eEeecCCCCccceEECCCCCEEEEEEC
Confidence            3456667899985333333333333323      889998877652       223334455667899999999887653


Q ss_pred             -CC--cEEE--EEEeCCc--cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCe--EEEEEccC-ceEEeeccc
Q 024868           84 -NG--GCKL--FEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGH--LRIMHWPS-LRIILDEPK  152 (261)
Q Consensus        84 -dg--~i~i--~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~--i~~~d~~~-~~~~~~~~~  152 (261)
                       +|  .+++  |++..+.  ....+..      ..........|+|||+.|+..+ .+|.  |+++++.. +.....+..
T Consensus       251 ~~g~~di~~~~~~~~~g~~g~~~~lt~------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~  324 (428)
T PRK01029        251 RYGNPDLFIQSFSLETGAIGKPRRLLN------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK  324 (428)
T ss_pred             CCCCcceeEEEeecccCCCCcceEeec------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence             23  3333  5655431  1111110      0112345689999999888765 4564  44445432 222233333


Q ss_pred             cCCceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868          153 AHKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (261)
Q Consensus       153 ~~~~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~  229 (261)
                      ....+....|||||+.|+..+.+   ..|.+||+.+++.... ... ...+..+.|+|||+.++.  .........|+++
T Consensus       325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~-~~~~~~p~wSpDG~~L~f--~~~~~g~~~L~~v  400 (428)
T PRK01029        325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTS-PENKESPSWAIDSLHLVY--SAGNSNESELYLI  400 (428)
T ss_pred             CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCC-CCCccceEECCCCCEEEE--EECCCCCceEEEE
Confidence            34467789999999998876543   4699999998876443 322 224678999999997421  2223345689999


Q ss_pred             ECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868          230 DISTWNKIGHKRLLRKPASVLSISLDG  256 (261)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~dg  256 (261)
                      |+.+++... +....+.+...+|+|-.
T Consensus       401 dl~~g~~~~-Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        401 SLITKKTRK-IVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             ECCCCCEEE-eecCCCcccCceecCCC
Confidence            998876543 33345567889999854

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.77  E-value=2.7e-17  Score=119.70  Aligned_cols=190  Identities=11%  Similarity=0.050  Sum_probs=146.3

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~  141 (261)
                      -..+|+|.+|++|+..+|.+-....|.||..........    ......|...|+.++|+|..+.|++++.|..-++|..
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~----~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP----AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee----ceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            347899999999999999999999999999987763111    1223345688999999999999999999999999998


Q ss_pred             cCc---eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE---EEEeecCCCceEEEEEecCCCcceEE
Q 024868          142 PSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW---TFLTRNSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       142 ~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      ..+   ++...+..++...+++.|+|.++.+|+|+....|.||-++..+--   +.+.......|.++.|+|++-.    
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL----  160 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL----  160 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce----
Confidence            443   334456677889999999999999999999999999988654322   1122223345899999999987    


Q ss_pred             EEEeeCCCcEEEEEECC-----C-------------CeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          216 CTVQRGDKALLAVYDIS-----T-------------WNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       216 ~~~~~~~d~~i~~~d~~-----~-------------~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                       +++|+.|+..++|..-     .             |+++.+.....+.+..+.|+|+|..||
T Consensus       161 -laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la  222 (361)
T KOG1523|consen  161 -LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA  222 (361)
T ss_pred             -ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence             7999999999998742     1             112222334457899999999999886

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=3e-18  Score=138.83  Aligned_cols=223  Identities=16%  Similarity=0.170  Sum_probs=164.3

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..|||+.|...   ..++++|+.+.        .+.+|..++..+      .....+|.+.++.++.+.+..++++++.|
T Consensus       191 naVyca~fDrt---g~~Iitgsdd~--------lvKiwS~et~~~------lAs~rGhs~ditdlavs~~n~~iaaaS~D  253 (1113)
T KOG0644|consen  191 NAVYCAIFDRT---GRYIITGSDDR--------LVKIWSMETARC------LASCRGHSGDITDLAVSSNNTMIAAASND  253 (1113)
T ss_pred             hheeeeeeccc---cceEeecCccc--------eeeeeeccchhh------hccCCCCccccchhccchhhhhhhhcccC
Confidence            46999999884   77899999988        666666666665      55789999999999999999999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee----ccccCC-----
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----EPKAHK-----  155 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~-----  155 (261)
                      ..|++|.+..+...       .....|.+.|++++|+|-.    +.+.||++++||.+-...+..    ......     
T Consensus       254 ~vIrvWrl~~~~pv-------svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~  322 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAPV-------SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSI  322 (1113)
T ss_pred             ceEEEEecCCCchH-------HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeee
Confidence            99999999988751       2234567999999999954    667999999999861111000    000001     


Q ss_pred             ---------------------ceeEEEEcCCCCEEEEec-----------CCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868          156 ---------------------SVLDMDFSLDSEFLATTS-----------TDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (261)
Q Consensus       156 ---------------------~v~~~~~s~~~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  203 (261)
                                           ....++|....-.+++.+           .+-.+++|++.+|+..+.+.+|.. .+..+
T Consensus       323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yvL  401 (1113)
T KOG0644|consen  323 LFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYVL  401 (1113)
T ss_pred             eccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-ceeee
Confidence                                 122233332222333332           234577888888888888777766 58999


Q ss_pred             EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .++|-+..+    ..+++.||...|||+-.|.+++........+..-+||+||+.++
T Consensus       402 d~Hpfn~ri----~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~  454 (1113)
T KOG0644|consen  402 DVHPFNPRI----AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIA  454 (1113)
T ss_pred             eecCCCcHh----hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEe
Confidence            999988874    57889999999999999888776665567788899999998776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=4e-16  Score=126.26  Aligned_cols=201  Identities=15%  Similarity=0.088  Sum_probs=131.7

Q ss_pred             ceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCC
Q 024868           36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDA  112 (261)
Q Consensus        36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~  112 (261)
                      ..+++..|.++..       ...+..+...+...+|+|||+.|+..+.+   ..|++|++.++....      ..  ...
T Consensus       178 ~~~l~~~d~~g~~-------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~------l~--~~~  242 (430)
T PRK00178        178 RYTLQRSDYDGAR-------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ------IT--NFE  242 (430)
T ss_pred             ceEEEEECCCCCC-------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE------cc--CCC
Confidence            3478888887654       22344566788999999999999876543   368889998765311      11  112


Q ss_pred             CCeEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCC
Q 024868          113 GPQKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDG  186 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~  186 (261)
                      +......|+|||+.|+.. ..++  .|+++|+.+++.. .+..+........|+|||+.++..+. ++  .|+++|+.++
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            344568999999988754 3444  6888899877653 34444445667899999998876654 33  5777888777


Q ss_pred             cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC--CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +...... ... ......|+|||++++    +....  ...|.+||+.+++... +.. ........|+|||++|+
T Consensus       322 ~~~~lt~-~~~-~~~~~~~Spdg~~i~----~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~  389 (430)
T PRK00178        322 RAERVTF-VGN-YNARPRLSADGKTLV----MVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLI  389 (430)
T ss_pred             CEEEeec-CCC-CccceEECCCCCEEE----EEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEE
Confidence            7543322 222 244678999999842    22222  2368999998876532 222 22334678999999886

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=3.7e-15  Score=119.92  Aligned_cols=219  Identities=21%  Similarity=0.333  Sum_probs=158.0

Q ss_pred             eeeEEEEEeeCCcceEEEE-ecCCCCCCCCCceEEEEEcCCC-CceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            6 TVTCGSWIKRPENVNLVVL-GKSSRASSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ++..+.+. .+....+++. +..++        .+..|+... ...      ...+..|...|..++|+|+++.++.++.
T Consensus       111 ~~~~~~~~-~~~~~~~~~~~~~~d~--------~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~  175 (466)
T COG2319         111 SVSKLALS-SPDGNSILLASSSLDG--------TVKLWDLSTPGKL------IRTLEGHSESVTSLAFSPDGKLLASGSS  175 (466)
T ss_pred             ceeeEEEE-CCCcceEEeccCCCCc--------cEEEEEecCCCeE------EEEEecCcccEEEEEECCCCCEEEecCC
Confidence            45555553 3333323333 33355        666777665 222      5568889999999999999998888875


Q ss_pred             -CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEe-eccccCCceeEE
Q 024868           84 -NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIIL-DEPKAHKSVLDM  160 (261)
Q Consensus        84 -dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~  160 (261)
                       ++.+++|+.......       .....|...+.+++|+|++. .+++++.|+.+++||...+.... ....+.... ..
T Consensus       176 ~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~  247 (466)
T COG2319         176 LDGTIKLWDLRTGKPL-------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS  247 (466)
T ss_pred             CCCceEEEEcCCCceE-------EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE
Confidence             999999999874321       11112578899999999998 55555899999999988776665 355555554 33


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccCCcE-EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      .|+|++.++++++.|+.+++|+...... ...+..| ...+.++.|+|++..     +++++.|+.+.+||..+......
T Consensus       248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~  321 (466)
T COG2319         248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKL-----LASGSSDGTVRLWDLETGKLLSS  321 (466)
T ss_pred             eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC-CccEEEEEECCCCCE-----EEEeeCCCcEEEEEcCCCceEEE
Confidence            8999998899999999999999987664 4444334 457999999997776     35577778899999988876655


Q ss_pred             ee--ccCcCeeEEEEe
Q 024868          240 KR--LLRKPASVLSIS  253 (261)
Q Consensus       240 ~~--~~~~~v~~~~~s  253 (261)
                      ..  .+...+..+.|.
T Consensus       322 ~~~~~~~~~~~~~~~~  337 (466)
T COG2319         322 LTLKGHEGPVSSLSFS  337 (466)
T ss_pred             eeecccCCceEEEEEC
Confidence            54  566668888883

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=1.7e-15  Score=121.88  Aligned_cols=227  Identities=21%  Similarity=0.341  Sum_probs=165.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-CCceEEEE-CCCCC-eEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAV-NPSGD-DFVC   80 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~-~l~~   80 (261)
                      ...+.++.+.+.   ...++.++.++        .+..|+.....     .....+..+. ..+..+.+ ++++. .++.
T Consensus        65 ~~~i~~~~~~~~---~~~~~~~~~d~--------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (466)
T COG2319          65 EDSITSIAFSPD---GELLLSGSSDG--------TIKLWDLDNGE-----KLIKSLEGLHDSSVSKLALSSPDGNSILLA  128 (466)
T ss_pred             cceEEEEEECCC---CcEEEEecCCC--------cEEEEEcCCCc-----eeEEEEeccCCCceeeEEEECCCcceEEec
Confidence            456777777764   45666666666        66666665543     0122343322 36777777 88887 4554


Q ss_pred             Eec-CCcEEEEEEeC-CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CCeEEEEEccCceEEeeccccCCce
Q 024868           81 STT-NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSV  157 (261)
Q Consensus        81 ~~~-dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~v  157 (261)
                      .+. |+.+.+|+... ...       ......|...+..++|+|+++.++.++. ++.+++|++..+........|...+
T Consensus       129 ~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  201 (466)
T COG2319         129 SSSLDGTVKLWDLSTPGKL-------IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV  201 (466)
T ss_pred             cCCCCccEEEEEecCCCeE-------EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence            444 89999999987 222       1223345678889999999998888875 9999999998877766666677899


Q ss_pred             eEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       158 ~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      .+++|+|++. .+++++.|+.+++||...+.... .+..+... . -..|+|++..     +++++.|+.+++||++...
T Consensus       202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-V-VSSFSPDGSL-----LASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc-e-eEeECCCCCE-----EEEecCCCcEEEeeecCCC
Confidence            9999999998 55555899999999998888777 56655543 3 2279999955     4689999999999998766


Q ss_pred             E-EeeeeccCcCeeEEEEeeCCCEEe
Q 024868          236 K-IGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       236 ~-~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      . +.....|...+.++.|+|++..++
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~~~~~~~  300 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSPDGKLLA  300 (466)
T ss_pred             cEEEEEecCCccEEEEEECCCCCEEE
Confidence            4 433456678999999999887765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.5e-16  Score=115.96  Aligned_cols=190  Identities=17%  Similarity=0.212  Sum_probs=136.3

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc-
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-   97 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-   97 (261)
                      ..++++++.+.        .|..|+..+..+       ..+......-+..+.||+|+++++++..-.+++|..--.+. 
T Consensus       199 ~k~imsas~dt--------~i~lw~lkGq~L-------~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG  263 (420)
T KOG2096|consen  199 AKYIMSASLDT--------KICLWDLKGQLL-------QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG  263 (420)
T ss_pred             ceEEEEecCCC--------cEEEEecCCcee-------eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence            55777777777        888899885543       12222333456788999999999999988899999843221 


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-------Eeec--c--ccCCceeEEEEcCCC
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-------ILDE--P--KAHKSVLDMDFSLDS  166 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~--~--~~~~~v~~~~~s~~~  166 (261)
                      ..+-.......-.|...|..++||++.+.+++.+.||+.++||++-.-.       +...  +  ...+....++++|+|
T Consensus       264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g  343 (420)
T KOG2096|consen  264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG  343 (420)
T ss_pred             chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence            1122222234445678999999999999999999999999999752211       1111  1  112234589999999


Q ss_pred             CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868          167 EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       167 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      +.|+.+. ...+++|..++|+....++.-+...|.+++|+++|++     +++++ |..++++.
T Consensus       344 ~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~-----~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  344 DSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY-----IATCG-DRYVRVIR  400 (420)
T ss_pred             cEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcE-----Eeeec-ceeeeeec
Confidence            9888765 4679999999998887777656667999999999998     45555 56777776

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=1.1e-17  Score=130.91  Aligned_cols=199  Identities=15%  Similarity=0.170  Sum_probs=153.9

Q ss_pred             EEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccccee--------------------------------
Q 024868           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL--------------------------------  102 (261)
Q Consensus        55 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--------------------------------  102 (261)
                      ....+.+|++.|.++...|.|.+|++|+.||+|+||.+.++.+.....                                
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            346789999999999999999999999999999999999987611000                                


Q ss_pred             -------------------------------e---------eeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEE
Q 024868          103 -------------------------------A---------KKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIM  139 (261)
Q Consensus       103 -------------------------------~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~  139 (261)
                                                     .         .....+.+...|..+.|+..|.+|++...   ...|.|.
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence                                           0         00012234567889999999999998764   3468888


Q ss_pred             EccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       140 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  219 (261)
                      ++.......-+...++.+.++.|+|...+|+.++. ..|+|||+...+.++.+..... .+..++.+|.|..     ++.
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDn-----li~  624 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDN-----LIL  624 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCe-----EEE
Confidence            88776655445556678999999999888888765 7799999998877777665444 6999999999998     688


Q ss_pred             eCCCcEEEEEECCCC-eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          220 RGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       220 ~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ++.|+.+..||+.-. ++.+.+..|...+.+++|++.-.++|
T Consensus       625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa  666 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA  666 (733)
T ss_pred             ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence            999999999999754 45556677877888888776555444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=1.5e-18  Score=132.00  Aligned_cols=216  Identities=13%  Similarity=0.161  Sum_probs=177.6

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcE
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   87 (261)
                      |.+.+..   ++..++.||..|        ++-.+|..+..+      ...+. -...|.++.|-.+.+++|++ ....+
T Consensus       133 Y~~~ytr---nGrhlllgGrKG--------HlAa~Dw~t~~L------~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~  193 (545)
T KOG1272|consen  133 YHLDYTR---NGRHLLLGGRKG--------HLAAFDWVTKKL------HFEIN-VMETVRDVTFLHNEQFFAVA-QKKYV  193 (545)
T ss_pred             eeeeecC---CccEEEecCCcc--------ceeeeeccccee------eeeee-hhhhhhhhhhhcchHHHHhh-hhceE
Confidence            4455655   367888999999        899999888876      22222 23578999999888888876 56679


Q ss_pred             EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCC
Q 024868           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE  167 (261)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  167 (261)
                      +|||-..-+         +..+.....|..+.|-|---+|++++..|.+..-|+.+|+.+..+....+.+..+.-+|-+.
T Consensus       194 yvYD~~GtE---------lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na  264 (545)
T KOG1272|consen  194 YVYDNNGTE---------LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA  264 (545)
T ss_pred             EEecCCCcE---------EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc
Confidence            999987654         44555567889999999888889999999999999999999888888888899999999999


Q ss_pred             EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe
Q 024868          168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA  247 (261)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  247 (261)
                      .+-+|..+|+|.+|.....+++..+..|.+ +|.++++.++|+|     +++.+.|..++|||++....+.+... ..+.
T Consensus       265 Vih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~Y-----MaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a  337 (545)
T KOG1272|consen  265 VIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRY-----MATTGLDRKVKIWDLRNFYQLHTYRT-PHPA  337 (545)
T ss_pred             eEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEECCCCcE-----EeecccccceeEeeeccccccceeec-CCCc
Confidence            999999999999999999998888887766 6999999999999     79999999999999998876655554 4566


Q ss_pred             eEEEEeeCCCE
Q 024868          248 SVLSISLDGKY  258 (261)
Q Consensus       248 ~~~~~s~dg~~  258 (261)
                      ..+++|..|-.
T Consensus       338 ~~ls~SqkglL  348 (545)
T KOG1272|consen  338 SNLSLSQKGLL  348 (545)
T ss_pred             cccccccccce
Confidence            77888776643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.76  E-value=3.6e-16  Score=126.23  Aligned_cols=199  Identities=17%  Similarity=0.148  Sum_probs=131.5

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  114 (261)
                      .|+.+|.++..       ...+..+...+...+|+|||++|+.+..+   ..|++||+.++....        .....+.
T Consensus       171 ~l~~~d~~g~~-------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------~~~~~~~  235 (417)
T TIGR02800       171 ELQVADYDGAN-------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------VASFPGM  235 (417)
T ss_pred             eEEEEcCCCCC-------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------eecCCCC
Confidence            67888776544       22344566678899999999999887654   479999998764311        1112345


Q ss_pred             eEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCCcE
Q 024868          115 QKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVA  188 (261)
Q Consensus       115 v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~~  188 (261)
                      +..++|+|||+.|+.. +.++  .|++||+.+++.. .+..+........|+|||+.|+..+. ++  .|+++|+.+++.
T Consensus       236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            5678999999877654 3333  5889998876543 33334444557899999998876654 33  588888877765


Q ss_pred             EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC---cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      . .+..+.. ....+.|+|+|+++     +....+   ..|.+||+.++... .+.. ......+.|+|||++|++
T Consensus       315 ~-~l~~~~~-~~~~~~~spdg~~i-----~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~  381 (417)
T TIGR02800       315 R-RLTFRGG-YNASPSWSPDGDLI-----AFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILY  381 (417)
T ss_pred             E-EeecCCC-CccCeEECCCCCEE-----EEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEE
Confidence            3 3332323 46788999999973     322333   37999999876543 2222 223456789999998863

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=3.8e-17  Score=127.03  Aligned_cols=200  Identities=17%  Similarity=0.274  Sum_probs=154.4

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc-ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      ...+..|.+.+..++|.|....|++++.||++++|+++.... ....+.+......|.++|.|++++++++.+++|+.||
T Consensus       287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            346778899999999999988999999999999999944221 1111222334456789999999999999999999999


Q ss_pred             eEEEEEccCce----------EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee----------
Q 024868          135 HLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR----------  194 (261)
Q Consensus       135 ~i~~~d~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------  194 (261)
                      +|+.|++....          ....+.+|.+.++.+++|+....|++++.||++++|+.....+ .++..          
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV  445 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence            99999664211          1223456778999999999999999999999999998764333 00000          


Q ss_pred             -----------------------------------cC------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          195 -----------------------------------NS------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       195 -----------------------------------~~------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                                                         ..      ...+.-+.++|.+..     .+++.+|+.|+++|..+
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~-----~~~~hed~~Ir~~dn~~  520 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADI-----TFTAHEDRSIRFFDNKT  520 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCe-----eEecccCCceecccccc
Confidence                                               00      012445667777766     68899999999999999


Q ss_pred             CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          234 WNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ++.+.....|...++++++.|+|-+|++
T Consensus       521 ~~~l~s~~a~~~svtslai~~ng~~l~s  548 (577)
T KOG0642|consen  521 GKILHSMVAHKDSVTSLAIDPNGPYLMS  548 (577)
T ss_pred             cccchheeeccceecceeecCCCceEEe
Confidence            9999888999999999999999998863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.75  E-value=6.4e-16  Score=110.60  Aligned_cols=163  Identities=23%  Similarity=0.379  Sum_probs=108.7

Q ss_pred             EEEEEeeCCcceEEEEecC--CCCC-CCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE--ec
Q 024868            9 CGSWIKRPENVNLVVLGKS--SRAS-SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS--TT   83 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~--~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~   83 (261)
                      .+.|+|..  ..+++....  +... .--+...++.++..+...     ....+. ..++|.+++|+|+|+.+++.  ..
T Consensus        10 ~~~W~~~G--~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~-----~~i~l~-~~~~I~~~~WsP~g~~favi~g~~   81 (194)
T PF08662_consen   10 KLHWQPSG--DYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPV-----ESIELK-KEGPIHDVAWSPNGNEFAVIYGSM   81 (194)
T ss_pred             EEEecccC--CEEEEEEEEeeccCcceEEeeEEEEEEecCCCcc-----ceeecc-CCCceEEEEECcCCCEEEEEEccC
Confidence            46788864  444443331  1111 112234666665554432     122232 34569999999999987654  35


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEEEccCceEEeeccccCCceeEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~  160 (261)
                      ++.+.+||++...         ...+ +...+..+.|||+|+++++++.   .|.+.+||.++.+.+...  .+..+..+
T Consensus        82 ~~~v~lyd~~~~~---------i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~  149 (194)
T PF08662_consen   82 PAKVTLYDVKGKK---------IFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDV  149 (194)
T ss_pred             CcccEEEcCcccE---------eEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEE
Confidence            6789999996322         1222 2356788999999999999863   467999999987776443  23457899


Q ss_pred             EEcCCCCEEEEecC------CCcEEEEEccCCcEEEEE
Q 024868          161 DFSLDSEFLATTST------DGSARIWKTEDGVAWTFL  192 (261)
Q Consensus       161 ~~s~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~  192 (261)
                      +|+|||+++++++.      |+.++||+.. |+.+...
T Consensus       150 ~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  150 EWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            99999999998764      6889999984 6665544

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.74  E-value=2.7e-16  Score=114.96  Aligned_cols=169  Identities=20%  Similarity=0.287  Sum_probs=131.8

Q ss_pred             eeecCCCCCceEEEECC----C-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC----cEE
Q 024868           57 YVFDESEGDPMTIAVNP----S-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG----SRF  127 (261)
Q Consensus        57 ~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l  127 (261)
                      .....|..++..++|++    + -..+++. ....+.+|....... ..++.. .....+.+....++|+-|.    -++
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatv-G~~rvtiy~c~~d~~-ir~lq~-y~D~d~~Esfytcsw~yd~~~~~p~l  108 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATV-GGNRVTIYECPGDGG-IRLLQS-YADEDHDESFYTCSWSYDSNTGNPFL  108 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEe-CCcEEEEEEECCccc-eeeeee-ccCCCCCcceEEEEEEecCCCCCeeE
Confidence            34567888999999985    2 2334444 455689998876542 122221 1222455677888898753    378


Q ss_pred             EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEee---cCCCceEEE
Q 024868          128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELC  203 (261)
Q Consensus       128 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~  203 (261)
                      |+++.-|.|++.|+.+++....+.+|...|..+.++|+ .+++++++.|..|++|++++..++..+-+   |.+ .|.++
T Consensus       109 a~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSv  187 (385)
T KOG1034|consen  109 AAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSV  187 (385)
T ss_pred             EeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEE
Confidence            88889999999999999988888888889999999995 57899999999999999999999988753   444 59999


Q ss_pred             EEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      .|+++|.+     +++++.|.+|++|++...
T Consensus       188 D~~~~gd~-----i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  188 DFSLDGDR-----IASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             EEcCCCCe-----eeccCCcceEEEEecChh
Confidence            99999998     799999999999999853

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2e-16  Score=117.10  Aligned_cols=182  Identities=19%  Similarity=0.241  Sum_probs=131.8

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEcc
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWP  142 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~  142 (261)
                      -.+..++|++.-..++++..|-.|++|+-..... ..+      .......|.+++|-|. ++.|++|+..| |.+|...
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-t~L------ks~sQrnvtclawRPlsaselavgCr~g-IciW~~s  170 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-TKL------KSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDS  170 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCCC-cee------cchhhcceeEEEeccCCcceeeeeecce-eEEEEcC
Confidence            3578899999666788889999999999877331 111      1112467999999995 46677776555 8999764


Q ss_pred             CceEE-----------eecc--ccCCceeEEEEcCCCCEEEEecC-CCcEEEEEccCCcEEEEEeecCCCceEEEEEecC
Q 024868          143 SLRII-----------LDEP--KAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (261)
Q Consensus       143 ~~~~~-----------~~~~--~~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~  208 (261)
                      .....           ..+.  ..+.+|+++.|.+||..+++++. |..|.|||..++..+.......+ .+.-+.||||
T Consensus       171 ~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPd  249 (445)
T KOG2139|consen  171 RTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPD  249 (445)
T ss_pred             cccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC-ceeeEEEcCC
Confidence            21110           0111  22357999999999999999885 67899999999887665533334 4889999999


Q ss_pred             CCcceEEEEEeeCCCcEEEEEEC-CCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          209 GTKPFLFCTVQRGDKALLAVYDI-STWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      |.+     ++++.-|+..++|+. +++.... .....+.|....|+|+|++|.
T Consensus       250 gd~-----lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  250 GDV-----LFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             CCE-----EEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEE
Confidence            999     577788999999954 4444443 333446999999999999885

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=6.8e-17  Score=120.95  Aligned_cols=202  Identities=10%  Similarity=0.043  Sum_probs=146.9

Q ss_pred             eEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC
Q 024868           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (261)
Q Consensus        54 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (261)
                      +....+.+|.+-|.++.|+.++++|++|+.|..+++|.++..-.......-......|...|.+++|+...+++++|..+
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            33456778999999999999999999999999999999864321111001112333455889999999999999999999


Q ss_pred             CeEEEEEccCceEEeeccccC---CceeEEEEcCCCCEEEEecCCCcEEEEEccCCc-EEEEE-eecCCCceEEEEEecC
Q 024868          134 GHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFL-TRNSDEKIELCRFSKD  208 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~v~~~~~~p~  208 (261)
                      ++|.+-|+.+.+.+... .+.   +.|+.+..+|-.+.|++.+.++.|.+||.+..+ ++..+ ....+.....+.|+|.
T Consensus       127 ~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             ceeEeeecccceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence            99999999998876443 333   379999999999999999999999999998655 32222 2223335788999998


Q ss_pred             CCcceEEEEEeeCCCcEEEEEECCCCeE-Eeee---eccCc---CeeEEEEeeCCCEEe
Q 024868          209 GTKPFLFCTVQRGDKALLAVYDISTWNK-IGHK---RLLRK---PASVLSISLDGKYLA  260 (261)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~---~~~~~---~v~~~~~s~dg~~la  260 (261)
                      ...+    +++.+..+-+.+||.+.... +...   ...+.   .-.++.|+|+|+.+.
T Consensus       206 ~P~L----i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m  260 (609)
T KOG4227|consen  206 TPAL----ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM  260 (609)
T ss_pred             Ccee----EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence            8874    46666667799999986543 1111   11111   124678999987653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=5.6e-15  Score=109.69  Aligned_cols=220  Identities=15%  Similarity=0.150  Sum_probs=151.8

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+....|+.+   ...+..|+.+|       ++++.-++.+.-.        ........|-.+-|+.  .++|..+.+
T Consensus         6 ~ti~~~~~Nqd---~~~lsvGs~~G-------yk~~~~~~~~k~~--------~~~~~~~~IvEmLFSS--SLvaiV~~~   65 (391)
T KOG2110|consen    6 PTINFIGFNQD---STLLSVGSKDG-------YKIFSCSPFEKCF--------SKDTEGVSIVEMLFSS--SLVAIVSIK   65 (391)
T ss_pred             cceeeeeeccc---eeEEEccCCCc-------eeEEecCchHHhh--------cccCCCeEEEEeeccc--ceeEEEecC
Confidence            44566667664   55777787777       3566655543311        0111112344455553  345544443


Q ss_pred             --CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc---CCceeE
Q 024868           85 --GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---HKSVLD  159 (261)
Q Consensus        85 --g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~v~~  159 (261)
                        +.+++++.+.+..        +-.+.-..+|.++.++.  +.|+++-. ..|+|||+++.+.+..+...   ...+..
T Consensus        66 qpr~Lkv~~~Kk~~~--------ICe~~fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~A  134 (391)
T KOG2110|consen   66 QPRKLKVVHFKKKTT--------ICEIFFPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCA  134 (391)
T ss_pred             CCceEEEEEcccCce--------EEEEecCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEe
Confidence              4588888876653        22222346788888875  35555534 44999999999887665443   235667


Q ss_pred             EEEcCCCCEEEEec--CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE-EEEEECCCCeE
Q 024868          160 MDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNK  236 (261)
Q Consensus       160 ~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~-i~~~d~~~~~~  236 (261)
                      +++++.+.+++.-+  ..|.|.+||+.+-+++..+..|.+ ++.+++|+|+|.+     ++++++.|+ ||||.+.+|+.
T Consensus       135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~l-----lATASeKGTVIRVf~v~~G~k  208 (391)
T KOG2110|consen  135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTL-----LATASEKGTVIRVFSVPEGQK  208 (391)
T ss_pred             eccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCE-----EEEeccCceEEEEEEcCCccE
Confidence            77777777888633  358999999999999999998766 6999999999998     799998886 79999999999


Q ss_pred             Eeeeecc--CcCeeEEEEeeCCCEEeC
Q 024868          237 IGHKRLL--RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       237 ~~~~~~~--~~~v~~~~~s~dg~~la~  261 (261)
                      +.++.-.  ...|.+++|+||+++|+.
T Consensus       209 l~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  209 LYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             eeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            8776633  356889999999999873

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.6e-15  Score=121.62  Aligned_cols=204  Identities=19%  Similarity=0.121  Sum_probs=123.5

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE---EEecCC--cEEEEEEeCCccccceeeeeCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV---CSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDA  112 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~  112 (261)
                      .||..|.++...       ..+..........+|+|||+.++   +...+|  .|++.++.++.. ..     +..  ..
T Consensus       166 ~l~~~d~dG~~~-------~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~-----lt~--~~  230 (428)
T PRK01029        166 ELWSVDYDGQNL-------RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KK-----ILA--LQ  230 (428)
T ss_pred             eEEEEcCCCCCc-------eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eE-----eec--CC
Confidence            788888877652       23444556678899999997532   333333  577778776653 11     111  12


Q ss_pred             CCeEEEEEeeCCcEEEEecc-CC----eEEEEEccCc--eEEeeccccC-CceeEEEEcCCCCEEEEec-CCCcEEEE--
Q 024868          113 GPQKCLSFSVDGSRFAAGGV-DG----HLRIMHWPSL--RIILDEPKAH-KSVLDMDFSLDSEFLATTS-TDGSARIW--  181 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~-d~----~i~~~d~~~~--~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~d~~i~iw--  181 (261)
                      +.....+|||||+.|+..+. +|    .+..|++..+  .....+.... ......+|+|||+.|+..+ .++...+|  
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            34456899999998887642 22    3444666542  1222222222 3346789999999887665 45654555  


Q ss_pred             EccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          182 KTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       182 d~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ++.. +.....+..... .+....|+|||++++.  .........|++||+.+++... +......+..+.|+|||++|+
T Consensus       311 ~~~~~g~~~~~lt~~~~-~~~~p~wSPDG~~Laf--~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~  386 (428)
T PRK01029        311 QIDPEGQSPRLLTKKYR-NSSCPAWSPDGKKIAF--CSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLV  386 (428)
T ss_pred             ECcccccceEEeccCCC-CccceeECCCCCEEEE--EEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEE
Confidence            4432 233344443322 4678899999998321  1111223579999999887643 333334567899999999886

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=2.4e-15  Score=121.55  Aligned_cols=220  Identities=15%  Similarity=0.076  Sum_probs=132.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE-E
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC-S   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~   81 (261)
                      ..++.+.+|+|+.   ..++... .++.      .+||.+|..++..       ..+....+.....+|+|||+.|+. .
T Consensus       217 ~~~~~~p~wSPDG---~~La~~s~~~g~------~~L~~~dl~tg~~-------~~lt~~~g~~~~~~wSPDG~~La~~~  280 (448)
T PRK04792        217 PEPLMSPAWSPDG---RKLAYVSFENRK------AEIFVQDIYTQVR-------EKVTSFPGINGAPRFSPDGKKLALVL  280 (448)
T ss_pred             CCcccCceECCCC---CEEEEEEecCCC------cEEEEEECCCCCe-------EEecCCCCCcCCeeECCCCCEEEEEE
Confidence            4567788999873   3444332 2332      2799999877652       112222334457899999998875 4


Q ss_pred             ecCCc--EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCc
Q 024868           82 TTNGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKS  156 (261)
Q Consensus        82 ~~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~  156 (261)
                      +.++.  |+++|+.++..        .....+........|+|||+.|+..+. ++  .|+++|+.+++...... ....
T Consensus       281 ~~~g~~~Iy~~dl~tg~~--------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~  351 (448)
T PRK04792        281 SKDGQPEIYVVDIATKAL--------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQ  351 (448)
T ss_pred             eCCCCeEEEEEECCCCCe--------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-CCCC
Confidence            55664  67777766542        111112234567899999998877653 33  57777877666433222 2223


Q ss_pred             eeEEEEcCCCCEEEEecCC-C--cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          157 VLDMDFSLDSEFLATTSTD-G--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      ....+|+|||++|+..+.+ +  .|.++|+.+++... +....  ......|+|||+.++.  ....+....+++++.. 
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~--~~~~~g~~~l~~~~~~-  425 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIY--STTYQGKQVLAAVSID-  425 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEE--EEecCCceEEEEEECC-
Confidence            3457899999998876543 3  46667887776533 33221  1335689999998421  1112223458888874 


Q ss_pred             CeEEeeeeccCcCeeEEEEee
Q 024868          234 WNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      ++....+....+.+..++|+|
T Consensus       426 G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        426 GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCceEECcCCCCCcCCCccCC
Confidence            444444555556778889987

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.73  E-value=2e-16  Score=112.43  Aligned_cols=232  Identities=16%  Similarity=0.139  Sum_probs=156.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .+.|+|+.|...    ..+..|...|        .+..|+..+..-      ...+. .|...|+.+..-|++ .+.+-+
T Consensus        14 ~~~v~s~~fqa~----~rL~sg~~~G--------~V~~w~lqt~r~------~~~~r~~g~~~it~lq~~p~d-~l~tqg   74 (323)
T KOG0322|consen   14 SSSVTSVLFQAN----ERLMSGLSVG--------IVKMWVLQTERD------LPLIRLFGRLFITNLQSIPND-SLDTQG   74 (323)
T ss_pred             cchheehhhccc----hhhhcccccc--------eEEEEEeecCcc------chhhhhhccceeeceeecCCc-chhhcC
Confidence            345666666542    2466777767        555555554432      22344 466788888888874 577778


Q ss_pred             cCCcEEEEEEeCCcc--------------ccceee--------------------------------eeCCCCCCCCCeE
Q 024868           83 TNGGCKLFEVYGGAT--------------DINLLA--------------------------------KKMPPLQDAGPQK  116 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~--------------~~~~~~--------------------------------~~~~~~~~~~~v~  116 (261)
                      .|+.+.+|++.....              ...+..                                .........+.+.
T Consensus        75 Rd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm  154 (323)
T KOG0322|consen   75 RDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM  154 (323)
T ss_pred             CCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence            899999999875211              000000                                0000111124555


Q ss_pred             EEEEee-CCc--EEEEeccCCeEEEEEccCceEEee----------ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868          117 CLSFSV-DGS--RFAAGGVDGHLRIMHWPSLRIILD----------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT  183 (261)
Q Consensus       117 ~~~~s~-~~~--~l~~~~~d~~i~~~d~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~  183 (261)
                      +..+.. +++  ++++|.++|.+.+||+.++..+..          ...|.++|.++.+.+.-..=++++.+..+..|++
T Consensus       155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl  234 (323)
T KOG0322|consen  155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSL  234 (323)
T ss_pred             eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeee
Confidence            555433 233  456677999999999998744332          3356678999999875555577888888999988


Q ss_pred             cC--CcE--EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          184 ED--GVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       184 ~~--~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                      +.  +.+  .......+. .+..+..-||++.     +++++.|+.|++|..++..++..+..|...|.+++|+||...+
T Consensus       235 ~~s~gslq~~~e~~lknp-Gv~gvrIRpD~KI-----lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  235 NHSTGSLQIRKEITLKNP-GVSGVRIRPDGKI-----LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             ccccCcccccceEEecCC-CccceEEccCCcE-----EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence            63  222  122222333 4889999999998     7999999999999999999999999999999999999997766


Q ss_pred             e
Q 024868          260 A  260 (261)
Q Consensus       260 a  260 (261)
                      |
T Consensus       309 A  309 (323)
T KOG0322|consen  309 A  309 (323)
T ss_pred             h
Confidence            5

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3.1e-15  Score=122.00  Aligned_cols=163  Identities=12%  Similarity=0.155  Sum_probs=121.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+++|.+++|.   .+++|+|..+|        +|.+|..-...-  .......+.-|.+.|.+++|+++|.+|++|+.
T Consensus       205 tf~~t~~~~spn---~~~~Aa~d~dG--------rI~vw~d~~~~~--~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~  271 (792)
T KOG1963|consen  205 TFNITCVALSPN---ERYLAAGDSDG--------RILVWRDFGSSD--DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR  271 (792)
T ss_pred             cccceeEEeccc---cceEEEeccCC--------cEEEEecccccc--ccccceEEEecccccceeEEecCCceEeeccc
Confidence            456899999994   78999999999        888876544111  12234568889999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc---c--------
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP---K--------  152 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~--------  152 (261)
                      .+.+.+|.+.+++.  +++.      .-.++|..+.+|||+.+.+....|+.|.+....+......+.   .        
T Consensus       272 E~VLv~Wq~~T~~k--qfLP------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~  343 (792)
T KOG1963|consen  272 EGVLVLWQLETGKK--QFLP------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR  343 (792)
T ss_pred             ceEEEEEeecCCCc--cccc------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence            99999999998872  2211      125789999999999999999899999998775543321111   1        


Q ss_pred             cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc
Q 024868          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (261)
Q Consensus       153 ~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~  187 (261)
                      ..+-.+.++++|.-+.++..+..+.|++||+.+.+
T Consensus       344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~  378 (792)
T KOG1963|consen  344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS  378 (792)
T ss_pred             ccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence            12235677888866677777788888888876543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=2.3e-15  Score=121.63  Aligned_cols=201  Identities=15%  Similarity=0.144  Sum_probs=126.6

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-C--cEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-G--GCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  114 (261)
                      +++..|.++..       ...+..+...+....|+|||+.|+..+.+ +  .|++||+.+++..  .    ....  .+.
T Consensus       199 ~l~i~d~dG~~-------~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~----lt~~--~g~  263 (448)
T PRK04792        199 QLMIADYDGYN-------EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--K----VTSF--PGI  263 (448)
T ss_pred             EEEEEeCCCCC-------ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--E----ecCC--CCC
Confidence            66777766554       22344556788899999999999876543 3  5888888766531  1    1111  223


Q ss_pred             eEEEEEeeCCcEEEEe-ccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCCcE
Q 024868          115 QKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVA  188 (261)
Q Consensus       115 v~~~~~s~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~~  188 (261)
                      ....+|+|||+.|+.. +.++  .|+++|+.+++.. .+..+.......+|+|||+.|+..+. ++  .|+++|+.+++.
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            3468999999988764 4555  4888888777653 34444445678899999998876654 33  567778877765


Q ss_pred             EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .. +..... .....+|+|||+++++  .........|.++|+.+++... +... .......|+|||++|+
T Consensus       343 ~~-Lt~~g~-~~~~~~~SpDG~~l~~--~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~  408 (448)
T PRK04792        343 SR-LTFEGE-QNLGGSITPDGRSMIM--VNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVI  408 (448)
T ss_pred             EE-EecCCC-CCcCeeECCCCCEEEE--EEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEE
Confidence            43 322222 2345789999998422  1111222367778988876532 2222 2233568999999886

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4.6e-16  Score=109.47  Aligned_cols=169  Identities=15%  Similarity=0.161  Sum_probs=125.3

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc---eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN---LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d  140 (261)
                      ..|.+-+|+|.+++|++|+.+|.|.++.+.+-.....   -.........|.++++.++|.  ..+|+++ .||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-gdG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-GDGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-cCceEEEee
Confidence            4577788999999999999999999999865321100   000112224567999999998  4467777 469999998


Q ss_pred             ccCceE------Eeec--cccC-----CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec
Q 024868          141 WPSLRI------ILDE--PKAH-----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (261)
Q Consensus       141 ~~~~~~------~~~~--~~~~-----~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p  207 (261)
                      .+....      ....  +.+.     ..|.++...|..+-+++++.|+.++-||+++|+..+++.+|.+. +.++.--.
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R~  166 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGRN  166 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce-eeeeeecc
Confidence            754322      1111  1111     25889999998888888889999999999999999999999885 99988733


Q ss_pred             CCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      ....     +++|++||++++||.++++.+..+.
T Consensus       167 ~~~q-----ilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  167 ANGQ-----ILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             cCcc-----eeecCCCccEEEEeccccceeEEec
Confidence            3344     5999999999999999998876554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=6.4e-15  Score=119.25  Aligned_cols=222  Identities=13%  Similarity=0.070  Sum_probs=136.4

Q ss_pred             CCceeeEEEEEeeCCcceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      ...++...+|+|+.   ..++..+ .++..      +||.++..++..       ..+....+.+...+|+|||+.|+..
T Consensus       197 ~~~~~~~p~wSpDG---~~la~~s~~~~~~------~l~~~~l~~g~~-------~~l~~~~g~~~~~~~SpDG~~la~~  260 (430)
T PRK00178        197 SREPILSPRWSPDG---KRIAYVSFEQKRP------RIFVQNLDTGRR-------EQITNFEGLNGAPAWSPDGSKLAFV  260 (430)
T ss_pred             CCCceeeeeECCCC---CEEEEEEcCCCCC------EEEEEECCCCCE-------EEccCCCCCcCCeEECCCCCEEEEE
Confidence            34577888999873   3444333 22222      789999877653       2233334455679999999988744


Q ss_pred             -ecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCC
Q 024868           82 -TTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHK  155 (261)
Q Consensus        82 -~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~  155 (261)
                       ..+|  .|++||+.++... .       ...+........|+|||+.|+..+. ++  .|+++++.+++...... ...
T Consensus       261 ~~~~g~~~Iy~~d~~~~~~~-~-------lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~  331 (430)
T PRK00178        261 LSKDGNPEIYVMDLASRQLS-R-------VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGN  331 (430)
T ss_pred             EccCCCceEEEEECCCCCeE-E-------cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCC
Confidence             4444  5788888776531 1       1112234556789999998877653 33  57788887766432222 222


Q ss_pred             ceeEEEEcCCCCEEEEecCC-C--cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          156 SVLDMDFSLDSEFLATTSTD-G--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      ......|+|||++++..+.+ +  .|.++|+.+++... +... . ......|+|||+.++.  ....+....|+++++.
T Consensus       332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~-~~~~p~~spdg~~i~~--~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-S-LDESPSVAPNGTMLIY--ATRQQGRGVLMLVSIN  406 (430)
T ss_pred             CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-C-CCCCceECCCCCEEEE--EEecCCceEEEEEECC
Confidence            34567899999999876643 3  58889998876533 3321 1 2335689999998421  1112223468888886


Q ss_pred             CCeEEeeeeccCcCeeEEEEeeC
Q 024868          233 TWNKIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~s~d  255 (261)
                      .... ..+....+.+..++|+|-
T Consensus       407 g~~~-~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        407 GRVR-LPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCce-EECcCCCCCcCCCccCCC
Confidence            4433 334445566788888873

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.71  E-value=1.4e-15  Score=111.11  Aligned_cols=192  Identities=13%  Similarity=0.050  Sum_probs=140.8

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc----eeee--eCCCCCCCCCeEEEEEe-------eCCcEEEEe
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN----LLAK--KMPPLQDAGPQKCLSFS-------VDGSRFAAG  130 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~--~~~~~~~~~~v~~~~~s-------~~~~~l~~~  130 (261)
                      .-.....|+|||..|++-+.|..+.+|++........    ....  ..........|...+|-       |+..++++.
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            3456789999999999999999999999854321111    0000  00111123567777774       567789999


Q ss_pred             ccCCeEEEEEccCceEEeecc--ccCC---ceeEEEEcCCCCEEEEecCCCcEEEEEc-cCCcEEEEE---e---ecCCC
Q 024868          131 GVDGHLRIMHWPSLRIILDEP--KAHK---SVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWTFL---T---RNSDE  198 (261)
Q Consensus       131 ~~d~~i~~~d~~~~~~~~~~~--~~~~---~v~~~~~s~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~---~---~~~~~  198 (261)
                      +.+.-|++||.-+++....+.  .|..   ...+++|+|||.+|++| ....|++||+ +.|+-....   .   ....+
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            999999999999988755443  2332   46799999999999987 4688999999 555422211   1   11233


Q ss_pred             ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       199 ~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      -+.+++|+|.....    ++.++....+-||.-..+.++..+.+|++.|+.+.|.+||+.|.
T Consensus       209 iisc~a~sP~~~~~----~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lf  266 (406)
T KOG2919|consen  209 IISCFAFSPMDSKT----LAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLF  266 (406)
T ss_pred             eeeeeeccCCCCcc----eeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeec
Confidence            58899999977642    58888888999999888889888889999999999999999775

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=1.8e-14  Score=105.14  Aligned_cols=191  Identities=18%  Similarity=0.262  Sum_probs=130.8

Q ss_pred             eEEE-EecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868           20 NLVV-LGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        20 ~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~   98 (261)
                      ++++ +||++..--++|.  +.+||......    ..+  + ....+|.++.+.++  +|++. ..+.|++|...+....
T Consensus        59 N~laLVGGg~~pky~pNk--viIWDD~k~~~----i~e--l-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~  126 (346)
T KOG2111|consen   59 NYLALVGGGSRPKYPPNK--VIIWDDLKERC----IIE--L-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL  126 (346)
T ss_pred             ceEEEecCCCCCCCCCce--EEEEecccCcE----EEE--E-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh
Confidence            4444 5655543345664  45556433332    112  2 23578999999765  46554 4667999999855332


Q ss_pred             cceeeeeCCCCCCCCCeEEEEEee--CCcEEEEec-cCCeEEEEEccCceE--EeeccccCCceeEEEEcCCCCEEEEec
Q 024868           99 INLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGG-VDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTS  173 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~-~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~  173 (261)
                      ...    ..........  ++..|  +..+||.-+ .-|.|.+-|+...+.  ...+..|.+.|.+++.+-+|..+|++|
T Consensus       127 l~~----~et~~NPkGl--C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS  200 (346)
T KOG2111|consen  127 LHV----IETRSNPKGL--CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS  200 (346)
T ss_pred             eee----eecccCCCce--EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec
Confidence            221    1111212223  33444  334555433 568999999876554  345677888999999999999999999


Q ss_pred             CCCc-EEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          174 TDGS-ARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       174 ~d~~-i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      ..|+ |+|||..+|+.+.++.... .+.+.+++|||+..+     ++.+++.|++++|.++.
T Consensus       201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-----LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-----LAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE-----EEEEcCCCeEEEEEeec
Confidence            9886 8999999999999887543 346999999999998     78899999999999875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.70  E-value=3.2e-16  Score=111.34  Aligned_cols=169  Identities=18%  Similarity=0.236  Sum_probs=128.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCce----ecCCeEEeeecCCCCCceEEEECCCCCeEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV----YTSPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (261)
                      -+.++|..|...-+...++++|..+|        ++..||..++..    ............|..+|.++.|.+.-+.=+
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsg--------hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi  221 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESG--------HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI  221 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCC--------eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc
Confidence            46788888766555566777888888        778888766421    111222445667899999999987655567


Q ss_pred             EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (261)
Q Consensus        80 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  159 (261)
                      +|+.+..+..|+++......+...  ...+ .+-.+..+..-||++.+|+++.|+.|++|..++..++..+.-|...|.+
T Consensus       222 sgga~dkl~~~Sl~~s~gslq~~~--e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~  298 (323)
T KOG0322|consen  222 SGGADDKLVMYSLNHSTGSLQIRK--EITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNA  298 (323)
T ss_pred             CCCccccceeeeeccccCcccccc--eEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeE
Confidence            788888899999976532111110  0111 1345778899999999999999999999999999998777778889999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEc
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKT  183 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~  183 (261)
                      ++|+|+...+|+++.|.+|.+|++
T Consensus       299 vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  299 VAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999986

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.69  E-value=1e-12  Score=103.12  Aligned_cols=220  Identities=16%  Similarity=0.214  Sum_probs=137.0

Q ss_pred             CCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeCCccccceeee-------e
Q 024868           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAK-------K  105 (261)
Q Consensus        34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~-------~  105 (261)
                      .+.+..+.++.+++.+..    .............++++|++++|+++.. +|.+.++++............       .
T Consensus        61 ~g~v~~~~i~~~~g~L~~----~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~  136 (345)
T PF10282_consen   61 SGGVSSYRIDPDTGTLTL----LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGP  136 (345)
T ss_dssp             TTEEEEEEEETTTTEEEE----EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred             CCCEEEEEECCCcceeEE----eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCC
Confidence            344566666666555411    1112213345678999999999998875 799999999875322211100       0


Q ss_pred             CCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCce--EE--ee-ccccCCceeEEEEcCCCCEEEEec-CCCcE
Q 024868          106 MPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLR--II--LD-EPKAHKSVLDMDFSLDSEFLATTS-TDGSA  178 (261)
Q Consensus       106 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~--~~--~~-~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i  178 (261)
                      ....+......++.|+|+++++++.. ....|++|++....  ..  .. ........+.+.|+|++++++... .++.|
T Consensus       137 ~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v  216 (345)
T PF10282_consen  137 NPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTV  216 (345)
T ss_dssp             STTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcE
Confidence            00112235578899999999888764 34479999987654  21  11 123334679999999999887654 57889


Q ss_pred             EEEEcc--CCcE--EEEEeec-----CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC--CCe--EEeeeeccCc
Q 024868          179 RIWKTE--DGVA--WTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWN--KIGHKRLLRK  245 (261)
Q Consensus       179 ~iwd~~--~~~~--~~~~~~~-----~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~--~~~--~~~~~~~~~~  245 (261)
                      .++++.  +++.  +..+...     .......++++|||+++|    ++....+.|.+|++.  +++  .+........
T Consensus       217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly----vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~  292 (345)
T PF10282_consen  217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY----VSNRGSNSISVFDLDPATGTLTLVQTVPTGGK  292 (345)
T ss_dssp             EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE----EEECTTTEEEEEEECTTTTTEEEEEEEEESSS
T ss_pred             EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE----EEeccCCEEEEEEEecCCCceEEEEEEeCCCC
Confidence            999998  4432  2222211     111477899999999853    555567789999993  333  3344444455


Q ss_pred             CeeEEEEeeCCCEEeC
Q 024868          246 PASVLSISLDGKYLAM  261 (261)
Q Consensus       246 ~v~~~~~s~dg~~la~  261 (261)
                      ....++++|+|++|++
T Consensus       293 ~Pr~~~~s~~g~~l~V  308 (345)
T PF10282_consen  293 FPRHFAFSPDGRYLYV  308 (345)
T ss_dssp             SEEEEEE-TTSSEEEE
T ss_pred             CccEEEEeCCCCEEEE
Confidence            6899999999999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.4e-16  Score=123.90  Aligned_cols=166  Identities=10%  Similarity=0.073  Sum_probs=127.1

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccC
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD  133 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d  133 (261)
                      +.++.+|++-|.+++|+.+|.+|++|+.|-.+.|||.-..+...      .....|...|.++.|-|  +.+.+++|..|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh------sI~TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH------SISTGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee------eeecccccceeEEeeeccCCCeEEEeccCc
Confidence            56789999999999999999999999999999999997555311      22234668899999999  56789999999


Q ss_pred             CeEEEEEccCce----------EEeeccccCCceeEEEEcCCC-CEEEEecCCCcEEEEEccCCcEEE-------E---E
Q 024868          134 GHLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWT-------F---L  192 (261)
Q Consensus       134 ~~i~~~d~~~~~----------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~-------~---~  192 (261)
                      ..|+++|+...+          .......|...|..++-.|++ +.+.+++.||.++-+|++......       .   +
T Consensus       117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny  196 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY  196 (758)
T ss_pred             ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence            999999997421          222233455678889999987 788899999999999998632111       0   1


Q ss_pred             eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       193 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      ....- ...++..+|...+.    ++.|+.|-..++||.+
T Consensus       197 ~~~li-elk~ltisp~rp~~----laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  197 NPQLI-ELKCLTISPSRPYY----LAVGGSDPFARLYDRR  231 (758)
T ss_pred             chhhh-eeeeeeecCCCCce----EEecCCCchhhhhhhh
Confidence            11111 25688999998873    5888999999999943

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=4.6e-15  Score=110.88  Aligned_cols=218  Identities=11%  Similarity=0.051  Sum_probs=149.1

Q ss_pred             EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCe-EEEEecC--CcEEEEEEeCCcc
Q 024868           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD-FVCSTTN--GGCKLFEVYGGAT   97 (261)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d--g~i~i~~~~~~~~   97 (261)
                      .++++-++|        .+..|....+.....+...  +..+ ..+..+.-++.... +++|+..  ..+.+||++....
T Consensus       117 ~Litc~~sG--------~l~~~~~k~~d~hss~l~~--la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q  185 (412)
T KOG3881|consen  117 TLITCVSSG--------NLQVRHDKSGDLHSSKLIK--LATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ  185 (412)
T ss_pred             EEEEEecCC--------cEEEEeccCCcccccccee--eecC-CceeeeccCCCCCceEecCchhcccceeeeeccccee
Confidence            344445555        5666665544432222222  2222 45666666775544 5568887  7899999987743


Q ss_pred             cccee--eeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceEE-eeccccCCceeEEEEcCCCCEEEEe
Q 024868           98 DINLL--AKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATT  172 (261)
Q Consensus        98 ~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~  172 (261)
                      ....-  ....-.+.-.-.++++.|-+.  ...|++++.-+.+++||.+.+... ..+.-...++.++...|++++++++
T Consensus       186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~g  265 (412)
T KOG3881|consen  186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTG  265 (412)
T ss_pred             eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEe
Confidence            22110  000111111235578889886  789999999999999999876543 3344445689999999999999999


Q ss_pred             cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE
Q 024868          173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI  252 (261)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  252 (261)
                      ..-+.+..||++.++..........+.++++..+|.+++     +++++-|+.++|+|+.+.+.+... .....++.+-+
T Consensus       266 n~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~-----las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~  339 (412)
T KOG3881|consen  266 NTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPV-----LASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILL  339 (412)
T ss_pred             cccchhheecccCceeeccccCCccCCcceEEEcCCCce-----EEeeccceeEEEeecccchhhhhh-hhhccccEEEe
Confidence            999999999999999887733333446999999999998     799999999999999997665432 23355566666


Q ss_pred             eeC
Q 024868          253 SLD  255 (261)
Q Consensus       253 s~d  255 (261)
                      .++
T Consensus       340 ~~~  342 (412)
T KOG3881|consen  340 RDD  342 (412)
T ss_pred             cCC
Confidence            554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.9e-15  Score=111.69  Aligned_cols=166  Identities=7%  Similarity=0.061  Sum_probs=122.5

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC-CCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      -|-|..+.|+..   ...+|+||.+.        ++..|+.+.......|........ |...|.|++|.....++.+|.
T Consensus        56 ~GCiNAlqFS~N---~~~L~SGGDD~--------~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   56 TGCINALQFSHN---DRFLASGGDDM--------HGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             ccccceeeeccC---CeEEeecCCcc--------eeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence            456778888874   67899999998        777777655443333444434433 457899999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce-EEe--eccccCCceeE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IIL--DEPKAHKSVLD  159 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~--~~~~~~~~v~~  159 (261)
                      .+++|...|+++.+....     ...-...+.|+.+..+|..+.+++.+.++.|.+||.+... ...  .........+.
T Consensus       125 ~~~~VI~HDiEt~qsi~V-----~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t  199 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYV-----ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT  199 (609)
T ss_pred             CcceeEeeecccceeeee-----ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence            999999999998764111     1112234689999999988889999999999999998655 211  11222346888


Q ss_pred             EEEcCC-CCEEEEecCCCcEEEEEccC
Q 024868          160 MDFSLD-SEFLATTSTDGSARIWKTED  185 (261)
Q Consensus       160 ~~~s~~-~~~l~~~~~d~~i~iwd~~~  185 (261)
                      +.|+|. ..+|++.+..+-+.+||.+.
T Consensus       200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  200 AEFHPETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             eeecCCCceeEEeccccCCCCceeecc
Confidence            999994 56788888888899999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.3e-15  Score=111.92  Aligned_cols=170  Identities=13%  Similarity=0.167  Sum_probs=124.4

Q ss_pred             CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEee--cc
Q 024868           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILD--EP  151 (261)
Q Consensus        76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~  151 (261)
                      ..++++-..|.|++||..+++....       .-.+...++.++|..  ....+.+++.||+|++||++.......  ..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~-------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEE-------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhe-------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence            4688888899999999998654111       111234566788876  457899999999999999997654332  22


Q ss_pred             ccC-CceeEEEEcCCCCEEEEecC----CCcEEEEEccCCcE-EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868          152 KAH-KSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (261)
Q Consensus       152 ~~~-~~v~~~~~s~~~~~l~~~~~----d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~  225 (261)
                      .+. .+..+++..-.++.+++|+.    +-.+.+||.+..+. +..+...+...|++++|+|...-+    +++|+-||.
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl----LlSGSvDGL  189 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL----LLSGSVDGL  189 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe----EEeecccce
Confidence            222 25667766667888888764    56899999998765 666655444469999999988774    699999999


Q ss_pred             EEEEECCCCeE---EeeeeccCcCeeEEEEeeCC
Q 024868          226 LAVYDISTWNK---IGHKRLLRKPASVLSISLDG  256 (261)
Q Consensus       226 i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~dg  256 (261)
                      +.+||++....   +.....+...|..+.|..++
T Consensus       190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             EEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            99999976532   33344566789999999887

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.69  E-value=1.4e-14  Score=106.31  Aligned_cols=226  Identities=15%  Similarity=0.171  Sum_probs=147.0

Q ss_pred             CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      +++.++..++|+|+.  +.++....-+-        +|-+|...+.+       ...++.....+..++|+|||++.+..
T Consensus        89 eg~agls~~~WSPdg--rhiL~tseF~l--------riTVWSL~t~~-------~~~~~~pK~~~kg~~f~~dg~f~ai~  151 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDG--RHILLTSEFDL--------RITVWSLNTQK-------GYLLPHPKTNVKGYAFHPDGQFCAIL  151 (447)
T ss_pred             cCCCcceeeeECCCc--ceEeeeeccee--------EEEEEEeccce-------eEEecccccCceeEEECCCCceeeee
Confidence            577889999999973  56666666666        66666665554       22344444566788888888887765


Q ss_pred             ecC------------------------------------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc
Q 024868           82 TTN------------------------------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS  125 (261)
Q Consensus        82 ~~d------------------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  125 (261)
                      +..                                    ..+.+||---.   .+     .......-.+..++|+|.++
T Consensus       152 sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---yk-----v~aYe~~lG~k~v~wsP~~q  223 (447)
T KOG4497|consen  152 SRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YK-----VYAYERGLGLKFVEWSPCNQ  223 (447)
T ss_pred             ecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---he-----eeeeeeccceeEEEeccccc
Confidence            432                                    11222221100   00     00111124578899999999


Q ss_pred             EEEEeccCCeEEEEEccCce------------------------------------------------------------
Q 024868          126 RFAAGGVDGHLRIMHWPSLR------------------------------------------------------------  145 (261)
Q Consensus       126 ~l~~~~~d~~i~~~d~~~~~------------------------------------------------------------  145 (261)
                      ++++|+.|+.+++.+--+-+                                                            
T Consensus       224 flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv  303 (447)
T KOG4497|consen  224 FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPV  303 (447)
T ss_pred             eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcce
Confidence            99999999988776530000                                                            


Q ss_pred             EEee------ccccCCceeEEEEcCCCCEEEEecCC--CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868          146 IILD------EPKAHKSVLDMDFSLDSEFLATTSTD--GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (261)
Q Consensus       146 ~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~  217 (261)
                      ....      .......+..++|++|..++++-.+.  +.+.+||++.-+.-..+..  ..+|+...|+|....     +
T Consensus       304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~piraf~WdP~~pr-----L  376 (447)
T KOG4497|consen  304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHPIRAFEWDPGRPR-----L  376 (447)
T ss_pred             eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh--ccceeEEEeCCCCce-----E
Confidence            0000      01112246789999999999987653  6799999998776555542  236999999999888     3


Q ss_pred             EeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +.......+++|.......+ .....+-.|..+.|.-+|..++
T Consensus       377 ~vctg~srLY~W~psg~~~V-~vP~~GF~i~~l~W~~~g~~i~  418 (447)
T KOG4497|consen  377 VVCTGKSRLYFWAPSGPRVV-GVPKKGFNIQKLQWLQPGEFIV  418 (447)
T ss_pred             EEEcCCceEEEEcCCCceEE-ecCCCCceeeeEEecCCCcEEE
Confidence            44444557999998764444 3455557899999999998876

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.68  E-value=2.8e-14  Score=115.30  Aligned_cols=219  Identities=16%  Similarity=0.152  Sum_probs=134.2

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ec
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT   83 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~   83 (261)
                      .++...+|+|+.   ..++.....+     +...++.||..++..       ..+..+.+.+.+++|+|||+.|+.. +.
T Consensus       190 ~~~~~p~~Spdg---~~la~~~~~~-----~~~~i~v~d~~~g~~-------~~~~~~~~~~~~~~~spDg~~l~~~~~~  254 (417)
T TIGR02800       190 EPILSPAWSPDG---QKLAYVSFES-----GKPEIYVQDLATGQR-------EKVASFPGMNGAPAFSPDGSKLAVSLSK  254 (417)
T ss_pred             CceecccCCCCC---CEEEEEEcCC-----CCcEEEEEECCCCCE-------EEeecCCCCccceEECCCCCEEEEEECC
Confidence            457778888863   3445443221     112788888877652       1233455667789999999988654 33


Q ss_pred             CC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCcee
Q 024868           84 NG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKSVL  158 (261)
Q Consensus        84 dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~  158 (261)
                      ++  .|++|++.++.. .       ....+........|+|||+.|+..+. ++  .|+++|+.+++.. .+........
T Consensus       255 ~~~~~i~~~d~~~~~~-~-------~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~  325 (417)
T TIGR02800       255 DGNPDIYVMDLDGKQL-T-------RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA  325 (417)
T ss_pred             CCCccEEEEECCCCCE-E-------ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence            43  588888876542 1       11112233456789999998877653 33  5888888766543 3333344567


Q ss_pred             EEEEcCCCCEEEEecCCC---cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          159 DMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      .+.|+|+|++++.++.++   .|.+||+.++... .+... . ......|+|||+++++  .........+++.+... +
T Consensus       326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~-~~~~p~~spdg~~l~~--~~~~~~~~~l~~~~~~g-~  399 (417)
T TIGR02800       326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-G-LDESPSFAPNGRMILY--ATTRGGRGVLGLVSTDG-R  399 (417)
T ss_pred             CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-C-CCCCceECCCCCEEEE--EEeCCCcEEEEEEECCC-c
Confidence            889999999999887765   7899998876543 33222 1 2456689999997421  12222234677777554 4


Q ss_pred             EEeeeeccCcCeeEEEEe
Q 024868          236 KIGHKRLLRKPASVLSIS  253 (261)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s  253 (261)
                      ....+....+.+..++|+
T Consensus       400 ~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       400 FRARLPLGNGDVREPAWS  417 (417)
T ss_pred             eeeECCCCCCCcCCCCCC
Confidence            444444444556666653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=8.5e-15  Score=118.44  Aligned_cols=216  Identities=16%  Similarity=0.121  Sum_probs=150.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec------CCCCCceEEEECC-CC
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD------ESEGDPMTIAVNP-SG   75 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~-~~   75 (261)
                      ...||..+.|..+..+ .-+++++.||        .|..|+.+....+..........      .....+++++|.+ +-
T Consensus       290 h~~~v~~vvW~~~~~~-~~f~s~ssDG--------~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p  360 (555)
T KOG1587|consen  290 HSEPVTAVVWLQNEHN-TEFFSLSSDG--------SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP  360 (555)
T ss_pred             CCcCeEEEEEeccCCC-CceEEEecCC--------cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC
Confidence            4578888999887655 5677777899        78888766544322211111111      1234688999988 56


Q ss_pred             CeEEEEecCCcEEEEEEeCCcccc-ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc-CceEEeecccc
Q 024868           76 DDFVCSTTNGGCKLFEVYGGATDI-NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIILDEPKA  153 (261)
Q Consensus        76 ~~l~~~~~dg~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~  153 (261)
                      ..++.|+++|.|+.=+..+..... ...........|.++|+.+.++|=+..++..+.|.++++|... ...++..+..+
T Consensus       361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~  440 (555)
T KOG1587|consen  361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS  440 (555)
T ss_pred             ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc
Confidence            678899999988774443333212 2222233555678999999999966554444459999999977 55555556666


Q ss_pred             CCceeEEEEcCC-CCEEEEecCCCcEEEEEccCC--cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868          154 HKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       154 ~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      ...+++++|||. ...++++..||.+.+||+...  +++.+.... ....+.+.|++.|+.     ++.|...|++++|+
T Consensus       441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~-----lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKL-----LAVGDANGTTHILK  514 (555)
T ss_pred             cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcE-----EEEecCCCcEEEEE
Confidence            667999999995 457888888999999999754  344444433 335778889999998     79999999999999


Q ss_pred             CCC
Q 024868          231 IST  233 (261)
Q Consensus       231 ~~~  233 (261)
                      +..
T Consensus       515 l~~  517 (555)
T KOG1587|consen  515 LSE  517 (555)
T ss_pred             cCc
Confidence            963

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.1e-14  Score=117.24  Aligned_cols=193  Identities=17%  Similarity=0.186  Sum_probs=143.6

Q ss_pred             cCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEE
Q 024868           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (261)
Q Consensus        60 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~  139 (261)
                      ..|.-.+++.++||++++++++..||+|.+|.--.......   ......-|+..|.++.|+++|.+|++|+..+.+.+|
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~---t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE---TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW  278 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc---cceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence            34666689999999999999999999999996544111000   001122357899999999999999999999999999


Q ss_pred             EccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec----------CCCceEEEEEecCC
Q 024868          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN----------SDEKIELCRFSKDG  209 (261)
Q Consensus       140 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~v~~~~~~p~~  209 (261)
                      .+.++++ +-++.-.++|..+.+|||+.+.+....|++|.+....+.+...++.+-          ...-.+.++++|.-
T Consensus       279 q~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~  357 (792)
T KOG1963|consen  279 QLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT  357 (792)
T ss_pred             eecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence            9999884 456666779999999999999999999999999987655443333211          12236678899955


Q ss_pred             CcceEEEEEeeCCCcEEEEEECCCCeEEeeeec-----cC------cCeeEEEEeeCCCEEeC
Q 024868          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-----LR------KPASVLSISLDGKYLAM  261 (261)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-----~~------~~v~~~~~s~dg~~la~  261 (261)
                      +.     ++..+..|.|.+||+-+.+.+..+..     +.      -.+..++.+-.|.++++
T Consensus       358 ~~-----~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT  415 (792)
T KOG1963|consen  358 NS-----LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMAT  415 (792)
T ss_pred             Cc-----eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEE
Confidence            54     57788999999999988776544332     11      24567777777888764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.65  E-value=1.5e-14  Score=115.45  Aligned_cols=185  Identities=19%  Similarity=0.278  Sum_probs=133.8

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~  143 (261)
                      .|..++|-|||..|+.+..+ .+.+||...+..        ..++ .|+..|++++|+.||+.+++|+.|..|.+|.-.-
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~l--------lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTL--------LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL   84 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccc--------ccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence            68999999999999887544 599999998875        3333 4578999999999999999999999999998532


Q ss_pred             ceEE--------ee---------------------------ccccC--CceeEEEEcCCCCEEEEecCCCcEEEEEccCC
Q 024868          144 LRII--------LD---------------------------EPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG  186 (261)
Q Consensus       144 ~~~~--------~~---------------------------~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~  186 (261)
                      ...+        +-                           ...+.  ..+.+++|..||++++.|-.||+|.|-+- ++
T Consensus        85 EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~g  163 (1081)
T KOG1538|consen   85 EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NG  163 (1081)
T ss_pred             cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CC
Confidence            1111        00                           00111  25778999999999999999999998864 44


Q ss_pred             cEEEEEe--ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          187 VAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       187 ~~~~~~~--~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ++.-.+.  +..+.+|++++|+|....-..-.++......++.+|.+. |+.+..-...+....++++-++|.|+.
T Consensus       164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~L  238 (1081)
T KOG1538|consen  164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYIL  238 (1081)
T ss_pred             CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEE
Confidence            4444443  334568999999996432011114556667778888774 566654555566778899999999875

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=3.7e-16  Score=119.12  Aligned_cols=218  Identities=12%  Similarity=0.100  Sum_probs=161.6

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      .|..+.|...   ..++|++. ..        .+++||..+.++       +.++.| ..|..+.|-|..-+|++++..|
T Consensus       172 tv~Dv~~LHn---eq~~AVAQ-K~--------y~yvYD~~GtEl-------HClk~~-~~v~rLeFLPyHfLL~~~~~~G  231 (545)
T KOG1272|consen  172 TVRDVTFLHN---EQFFAVAQ-KK--------YVYVYDNNGTEL-------HCLKRH-IRVARLEFLPYHFLLVAASEAG  231 (545)
T ss_pred             hhhhhhhhcc---hHHHHhhh-hc--------eEEEecCCCcEE-------eehhhc-CchhhhcccchhheeeecccCC
Confidence            3445555443   34566653 33        688999888774       345544 5688999999988889999999


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD  165 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~  165 (261)
                      .++--|+..++....       .....+.+..++-+|-+..+-+|...|+|.+|.....+++..+..|.++|.++++.++
T Consensus       232 ~L~Y~DVS~GklVa~-------~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~  304 (545)
T KOG1272|consen  232 FLKYQDVSTGKLVAS-------IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRG  304 (545)
T ss_pred             ceEEEeechhhhhHH-------HHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCC
Confidence            999999999875222       1223567788888998889999999999999999988988899999999999999999


Q ss_pred             CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC-CCC----eEEeee
Q 024868          166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI-STW----NKIGHK  240 (261)
Q Consensus       166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~-~~~----~~~~~~  240 (261)
                      |+|+++++.|..++|||+++...+.++...  .+...+++|..|-.      + .+....+.+|.= -.+    +...-.
T Consensus       305 G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp--~~a~~ls~SqkglL------A-~~~G~~v~iw~d~~~~s~~~~~pYm~  375 (545)
T KOG1272|consen  305 GRYMATTGLDRKVKIWDLRNFYQLHTYRTP--HPASNLSLSQKGLL------A-LSYGDHVQIWKDALKGSGHGETPYMN  375 (545)
T ss_pred             CcEEeecccccceeEeeeccccccceeecC--CCccccccccccce------e-eecCCeeeeehhhhcCCCCCCcchhh
Confidence            999999999999999999988877776643  34788899987753      3 333446899962 221    111111


Q ss_pred             eccCcCeeEEEEeeCCCEE
Q 024868          241 RLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       241 ~~~~~~v~~~~~s~dg~~l  259 (261)
                      ....++|..+.|.|-...|
T Consensus       376 H~~~~~V~~l~FcP~EDvL  394 (545)
T KOG1272|consen  376 HRCGGPVEDLRFCPYEDVL  394 (545)
T ss_pred             hccCcccccceeccHHHee
Confidence            2233578888888855443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=5.1e-15  Score=116.34  Aligned_cols=198  Identities=12%  Similarity=0.149  Sum_probs=144.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..+|..+.|+.+.   .++++-.. ++.-      .+.+++......      ...+....+.|.++.|+|...+|++++
T Consensus       521 ~k~i~~vtWHrkG---DYlatV~~~~~~~------~VliHQLSK~~s------Q~PF~kskG~vq~v~FHPs~p~lfVaT  585 (733)
T KOG0650|consen  521 PKSIRQVTWHRKG---DYLATVMPDSGNK------SVLIHQLSKRKS------QSPFRKSKGLVQRVKFHPSKPYLFVAT  585 (733)
T ss_pred             CCccceeeeecCC---ceEEEeccCCCcc------eEEEEecccccc------cCchhhcCCceeEEEecCCCceEEEEe
Confidence            3578888999864   35553322 2211      566666654442      234555668899999999999998876


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc-ccCCceeEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMD  161 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~  161 (261)
                      .. .|++||+..+....+       .+.....|..++.+|.|..|+.++.|+.+..+|+.-.....+.. -|...+++++
T Consensus       586 q~-~vRiYdL~kqelvKk-------L~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va  657 (733)
T KOG0650|consen  586 QR-SVRIYDLSKQELVKK-------LLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVA  657 (733)
T ss_pred             cc-ceEEEehhHHHHHHH-------HhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhh
Confidence            54 599999987654222       22334678899999999999999999999999998665444444 4455899999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEcc------CC---cEEEEEeecCC---CceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868          162 FSLDSEFLATTSTDGSARIWKTE------DG---VAWTFLTRNSD---EKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~------~~---~~~~~~~~~~~---~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~  229 (261)
                      |++.=.++++++.||.+.||--.      ..   -+++.+.+|..   ..|..+.|+|...+     +++++.||+|++|
T Consensus       658 ~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-----LfsAGAd~tirlf  732 (733)
T KOG0650|consen  658 FHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-----LFSAGADGTIRLF  732 (733)
T ss_pred             hccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce-----EEecCCCceEEee
Confidence            99999999999999999998532      22   23455555432   24778889999999     7899999999998

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.65  E-value=2.8e-12  Score=100.71  Aligned_cols=218  Identities=16%  Similarity=0.229  Sum_probs=142.2

Q ss_pred             CCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec----CCcEEEEEEeCCccccceeeeeCC
Q 024868           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMP  107 (261)
Q Consensus        32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~~~~~~~~~~~~~~~~~~  107 (261)
                      +..+.|.++.+|..++.+..    .... ........++++|++++|.+..+    ++.|..|++.........+...  
T Consensus        10 ~~~~gI~~~~~d~~~g~l~~----~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~--   82 (345)
T PF10282_consen   10 GKGGGIYVFRFDEETGTLTL----VQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV--   82 (345)
T ss_dssp             SSSTEEEEEEEETTTTEEEE----EEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE--
T ss_pred             CCCCcEEEEEEcCCCCCceE----eeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee--
Confidence            34466788889888887622    1111 13456778999999999988876    4789999998752212221111  


Q ss_pred             CCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCc-eEEee--cc-----------ccCCceeEEEEcCCCCEEEEe
Q 024868          108 PLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSL-RIILD--EP-----------KAHKSVLDMDFSLDSEFLATT  172 (261)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~-~~~~~--~~-----------~~~~~v~~~~~s~~~~~l~~~  172 (261)
                       .........++++|++++|+++. .+|.+.++++... .....  ..           .......++.++|+|+++++.
T Consensus        83 -~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   83 -PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             -EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             -ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence             11234556799999999998886 5899999999763 22111  11           112357899999999988775


Q ss_pred             cC-CCcEEEEEccCCc--E--EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC--CCeE--Eeeeecc
Q 024868          173 ST-DGSARIWKTEDGV--A--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNK--IGHKRLL  243 (261)
Q Consensus       173 ~~-d~~i~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~--~~~~--~~~~~~~  243 (261)
                      .. ...|++|++....  .  ...+....+...+.++|+|+++++|    +....+++|.+|++.  +++.  +......
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y----v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~  237 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY----VVNELSNTVSVFDYDPSDGSLTEIQTISTL  237 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE----EEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE----EecCCCCcEEEEeecccCCceeEEEEeeec
Confidence            43 4679999997654  3  2233444555689999999999854    556778899999988  4432  2222222


Q ss_pred             ------CcCeeEEEEeeCCCEEeC
Q 024868          244 ------RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       244 ------~~~v~~~~~s~dg~~la~  261 (261)
                            ......++++|||++|.+
T Consensus       238 ~~~~~~~~~~~~i~ispdg~~lyv  261 (345)
T PF10282_consen  238 PEGFTGENAPAEIAISPDGRFLYV  261 (345)
T ss_dssp             ETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred             cccccccCCceeEEEecCCCEEEE
Confidence                  125778999999999863

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.8e-13  Score=109.30  Aligned_cols=197  Identities=12%  Similarity=0.048  Sum_probs=124.8

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCe-EEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD-FVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~  113 (261)
                      +|+.-|.+....      ...+. . +......|+|||+. ++..+.+   ..|+++|+.+++.. .     .  ....+
T Consensus       170 ~l~~~d~dg~~~------~~~~~-~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~-----l--t~~~g  233 (419)
T PRK04043        170 NIVLADYTLTYQ------KVIVK-G-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-K-----I--ASSQG  233 (419)
T ss_pred             eEEEECCCCCce------eEEcc-C-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-E-----E--ecCCC
Confidence            777777766542      22233 2 36788999999985 5544433   46888888776531 1     1  11234


Q ss_pred             CeEEEEEeeCCcEEEEec-c--CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-C--cEEEEEccCCc
Q 024868          114 PQKCLSFSVDGSRFAAGG-V--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-G--SARIWKTEDGV  187 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~-~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~iwd~~~~~  187 (261)
                      ......|+|||+.++... .  +..|+++|+.+++.. .+...........|+|||+.|+..+.. +  .|++.|+.+++
T Consensus       234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            556788999998776543 2  356888898777643 333333334456899999988776642 3  68888888777


Q ss_pred             EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC--------cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                      ..+..... .   ....|+|||+++.    ++....        ..|.+.|+.+++.. .+... .......|+|||+.|
T Consensus       313 ~~rlt~~g-~---~~~~~SPDG~~Ia----~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I  382 (419)
T PRK04043        313 VEQVVFHG-K---NNSSVSTYKNYIV----YSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSI  382 (419)
T ss_pred             eEeCccCC-C---cCceECCCCCEEE----EEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEE
Confidence            64433221 1   2348999999842    222221        47999999887654 23322 233468999999988


Q ss_pred             eC
Q 024868          260 AM  261 (261)
Q Consensus       260 a~  261 (261)
                      ++
T Consensus       383 ~f  384 (419)
T PRK04043        383 MF  384 (419)
T ss_pred             EE
Confidence            63

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.64  E-value=5.1e-13  Score=104.91  Aligned_cols=196  Identities=16%  Similarity=0.162  Sum_probs=128.8

Q ss_pred             ceEE-EEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc
Q 024868           19 VNLV-VLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT   97 (261)
Q Consensus        19 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~   97 (261)
                      .+++ ++-..++        ++..+|..+.+.      ...+......-..+.++|||+++++++.||.|.++|+.+.+.
T Consensus         5 ~~l~~V~~~~~~--------~v~viD~~t~~~------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~   70 (369)
T PF02239_consen    5 GNLFYVVERGSG--------SVAVIDGATNKV------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV   70 (369)
T ss_dssp             GGEEEEEEGGGT--------EEEEEETTT-SE------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred             ccEEEEEecCCC--------EEEEEECCCCeE------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence            3444 4555667        899999988765      334543333344578999999999999999999999998875


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeecccc-------CCceeEEEEcCCCCEE
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFL  169 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l  169 (261)
                      .        ..+.......++++|+||+++++++ ..+.+.++|.++.+.+..+...       ...+..+..+|....+
T Consensus        71 v--------~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f  142 (369)
T PF02239_consen   71 V--------ATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF  142 (369)
T ss_dssp             E--------EEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred             E--------EEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence            2        2222234568899999999998876 6889999999998877655432       2357788888888755


Q ss_pred             EE-ecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          170 AT-TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       170 ~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      +. .-+.+.|.+.|....+.+..-....+.......|+|+++++    +++...++.|.++|.++++.+..+
T Consensus       143 Vv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~----~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  143 VVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF----LVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             EEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE----EEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEEccCCeEEEEEeccccccceeeecccccccccccCccccee----eecccccceeEEEeeccceEEEEe
Confidence            54 44558888889876654433222233358889999999983    244455668999999998876544

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=1.7e-13  Score=100.11  Aligned_cols=223  Identities=12%  Similarity=0.164  Sum_probs=144.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~   82 (261)
                      ..+...++|+.+   ..-+++|...|       .+||..||-....      ........-.+..+-|  -.++|+ +|+
T Consensus         5 ~~~~lsvs~NQD---~ScFava~~~G-------friyn~~P~ke~~------~r~~~~~G~~~veMLf--R~N~laLVGG   66 (346)
T KOG2111|consen    5 EPKTLSVSFNQD---HSCFAVATDTG-------FRIYNCDPFKESA------SRQFIDGGFKIVEMLF--RSNYLALVGG   66 (346)
T ss_pred             cCceeEEEEccC---CceEEEEecCc-------eEEEecCchhhhh------hhccccCchhhhhHhh--hhceEEEecC
Confidence            345667899886   44677776655       4788888743321      1111111112222222  234444 333


Q ss_pred             cC------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-ceEEeecccc--
Q 024868           83 TN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKA--  153 (261)
Q Consensus        83 ~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~--  153 (261)
                      .+      .++.|||-....+        ...+.-..+|.++.++++  .|++. ..+.|++|...+ .+.+..+...  
T Consensus        67 g~~pky~pNkviIWDD~k~~~--------i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~N  135 (346)
T KOG2111|consen   67 GSRPKYPPNKVIIWDDLKERC--------IIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSN  135 (346)
T ss_pred             CCCCCCCCceEEEEecccCcE--------EEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccC
Confidence            32      5799999433332        333444678999999875  55555 577899999873 3333333222  


Q ss_pred             CCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE-EEEE
Q 024868          154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVY  229 (261)
Q Consensus       154 ~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~-i~~~  229 (261)
                      .....+++-+.+..+||.-+ .-|+|+|-|+...+.  ...+..|.. .|.+++.+.+|..     +++++..|+ |+||
T Consensus       136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~-----vATaStkGTLIRIF  209 (346)
T KOG2111|consen  136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTL-----VATASTKGTLIRIF  209 (346)
T ss_pred             CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccE-----EEEeccCcEEEEEE
Confidence            22355554444555666644 469999999986554  355666655 6999999999998     789988886 8999


Q ss_pred             ECCCCeEEeeeec--cCcCeeEEEEeeCCCEEeC
Q 024868          230 DISTWNKIGHKRL--LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       230 d~~~~~~~~~~~~--~~~~v~~~~~s~dg~~la~  261 (261)
                      |..+|+++.++.-  ....+.+++||||+.+||+
T Consensus       210 dt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav  243 (346)
T KOG2111|consen  210 DTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV  243 (346)
T ss_pred             EcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence            9999999877653  3468999999999999985

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.63  E-value=1.9e-13  Score=105.16  Aligned_cols=209  Identities=13%  Similarity=0.114  Sum_probs=145.9

Q ss_pred             EEEEEcCCCCceecCCeE-----EeeecCCCCCceEEE-ECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLV-----TYVFDESEGDPMTIA-VNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~-~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  110 (261)
                      .||.||+.+..+....+.     .........+..-+. |++ +|++++..+ .|+..+.+...+-         ...+.
T Consensus       288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~---------~iqv~  357 (668)
T COG4946         288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGY---------SIQVG  357 (668)
T ss_pred             cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCe---------eEEcC
Confidence            799999988765321111     001111111122222 444 678777765 5667777765543         22344


Q ss_pred             CCCCeEEEEEeeCCcEEEEeccCC-eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE
Q 024868          111 DAGPQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (261)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~  189 (261)
                      +.+.|.-..+.-+++-++.|..|| .+-++|.++++. ......-+.|.++..+|+|++++.+.+...+.+.|+.+|+..
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~  436 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR  436 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence            566788888888888899999998 899999888775 445566678999999999999999999999999999999875


Q ss_pred             EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       190 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ..-+ ...+-|+.+.|+|++++ +.+..-.+-....|++||+.+++... .....+.-.+.+|.|||++|.
T Consensus       437 ~idk-S~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         437 LIDK-SEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             Eecc-cccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEEE
Confidence            4333 33446999999999998 33323334445689999999888664 344445557899999999885

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.63  E-value=6.6e-16  Score=113.20  Aligned_cols=133  Identities=9%  Similarity=0.096  Sum_probs=100.9

Q ss_pred             EEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEEccCceE
Q 024868           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRI  146 (261)
Q Consensus        68 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~  146 (261)
                      -.+|||+|+++|+.+.. .+.|-|..+-+...        .+.--..|..+.|..|..+++.+ ..++.|.+|++...+-
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q--------lf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew   83 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ--------LFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW   83 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHH--------HHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence            36799999999998766 68888887765311        11112456778999988776655 5788999999988887


Q ss_pred             EeeccccCCceeEEEEcCCCCEEE-EecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          147 ILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       147 ~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      ..++.....++.+++|||||+.++ +...+-.|.+|.+.+.+....-.  ....+..++|+|||++
T Consensus        84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f  147 (447)
T KOG4497|consen   84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQF  147 (447)
T ss_pred             EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCce
Confidence            777777778899999999997655 55568999999999877654332  2234788999999997

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.6e-14  Score=112.68  Aligned_cols=213  Identities=15%  Similarity=0.205  Sum_probs=146.9

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~   81 (261)
                      +|=|.|++|+.+   +.++++|+.|-        ++.+||+-..++     ....-++|...|.++.|-|  +.+.+++|
T Consensus        50 ~GCVN~LeWn~d---G~lL~SGSDD~--------r~ivWd~~~~Kl-----lhsI~TgHtaNIFsvKFvP~tnnriv~sg  113 (758)
T KOG1310|consen   50 TGCVNCLEWNAD---GELLASGSDDT--------RLIVWDPFEYKL-----LHSISTGHTANIFSVKFVPYTNNRIVLSG  113 (758)
T ss_pred             cceecceeecCC---CCEEeecCCcc--------eEEeecchhcce-----eeeeecccccceeEEeeeccCCCeEEEec
Confidence            578999999986   56999999998        999999876553     1334578999999999988  45678899


Q ss_pred             ecCCcEEEEEEeCCccc---cceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEE-------eec
Q 024868           82 TTNGGCKLFEVYGGATD---INLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRII-------LDE  150 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~-------~~~  150 (261)
                      ..|..|+++|+...+..   ............|...|..++-.|++ +.+.+++.||+++-+|++.....       ..+
T Consensus       114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence            99999999999853221   11111112223355778888989987 78999999999999999753211       001


Q ss_pred             cc---cCCceeEEEEcC-CCCEEEEecCCCcEEEEEccC--------Cc----------EEEEEeecCC-----------
Q 024868          151 PK---AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED--------GV----------AWTFLTRNSD-----------  197 (261)
Q Consensus       151 ~~---~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~--------~~----------~~~~~~~~~~-----------  197 (261)
                      ..   .--...++..+| +..+|+.|+.|-..++||.+.        +.          ++..+...+-           
T Consensus       194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI  273 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence            11   112467899999 466889999999999999431        11          2222221110           


Q ss_pred             CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       198 ~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                      ..++-+.|+|+|..+    +++-+. -.|+++|+..++..
T Consensus       274 ~~~t~vtfnpNGtEl----Lvs~~g-EhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTEL----LVSWGG-EHVYLFDVNEDKSP  308 (758)
T ss_pred             eeeEEEEECCCCcEE----EEeeCC-eEEEEEeecCCCCc
Confidence            014567899999983    233333 36999999877654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.61  E-value=2.2e-13  Score=107.01  Aligned_cols=176  Identities=17%  Similarity=0.155  Sum_probs=138.4

Q ss_pred             CCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEe--------------------eCCcEEEEecc
Q 024868           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--------------------VDGSRFAAGGV  132 (261)
Q Consensus        73 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------------------~~~~~l~~~~~  132 (261)
                      |...++|....||.+++|+...++....+.    +...-.+...+..|.                    -|...++-|..
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~----p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFA----PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeec----cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            456789999999999999998877533221    111123444444442                    12235777778


Q ss_pred             CCeEEEEEccCceEEeecc--ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC
Q 024868          133 DGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (261)
Q Consensus       133 d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~  210 (261)
                      .|.|.+|++..++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+..... .+.+++.+|||+
T Consensus        79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~  157 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGK  157 (541)
T ss_pred             CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCC
Confidence            8999999999888766554  4556899999999999999999999999999999999998887766 489999999999


Q ss_pred             cceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeC-----CCEEe
Q 024868          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GKYLA  260 (261)
Q Consensus       211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d-----g~~la  260 (261)
                      .     +++++  ++|++||+++++.+.++.+|.++|++++|..+     |.++.
T Consensus       158 ~-----l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vL  205 (541)
T KOG4547|consen  158 I-----LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVL  205 (541)
T ss_pred             E-----EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceee
Confidence            7     45555  47999999999999999999999999999887     66653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.1e-13  Score=115.67  Aligned_cols=233  Identities=13%  Similarity=0.147  Sum_probs=150.1

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEE-------eeecCCCCCceEEEECCCCCe
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT-------YVFDESEGDPMTIAVNPSGDD   77 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~   77 (261)
                      ..|+.+.+.... +..++.+|+.||        .|.+|+.-..... .+...       -.+.+..+.=.-++|......
T Consensus      1110 t~Vs~l~liNe~-D~aLlLtas~dG--------vIRIwk~y~~~~~-~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~ 1179 (1387)
T KOG1517|consen 1110 TRVSDLELINEQ-DDALLLTASSDG--------VIRIWKDYADKWK-KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH 1179 (1387)
T ss_pred             Cccceeeeeccc-chhheeeeccCc--------eEEEecccccccC-CceeEEeeccccccCccCCCCCeeeehhhhCCe
Confidence            356677776544 467888899999        6666655332210 11111       111222222355778876666


Q ss_pred             EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceE---Eeecccc
Q 024868           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKA  153 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~  153 (261)
                      |+++++-..|+|||...........      ......++++.-+. .|+.|++|..||.|++||.+....   +.....|
T Consensus      1180 Ll~tGd~r~IRIWDa~~E~~~~diP------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h 1253 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIP------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREH 1253 (1387)
T ss_pred             EEecCCeeEEEEEecccceeEeecc------cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeeccc
Confidence            7766678899999998765422211      11234556655443 478999999999999999875432   3444555


Q ss_pred             CCc--eeEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEEEE--eecC--CCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868          154 HKS--VLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFL--TRNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       154 ~~~--v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~--~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i  226 (261)
                      ...  |..+.+.+.|- .|++++.||.|++||++.......+  ..+-  ++..+++..+++...     +++|+. +.|
T Consensus      1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi-----iAsGs~-q~i 1327 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI-----IASGSA-QLI 1327 (1387)
T ss_pred             CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe-----eeecCc-ceE
Confidence            554  99999988665 4999999999999999974222222  2222  324899999999886     566666 899


Q ss_pred             EEEECCCCeEEeeeecc-------CcCeeEEEEeeCCCEEe
Q 024868          227 AVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       227 ~~~d~~~~~~~~~~~~~-------~~~v~~~~~s~dg~~la  260 (261)
                      +||++.. +.+..+...       .+.+.+++|+|---.||
T Consensus      1328 kIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1328 KIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred             EEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence            9999864 443333322       25678999999655444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2e-13  Score=107.09  Aligned_cols=169  Identities=14%  Similarity=0.146  Sum_probs=126.4

Q ss_pred             EEEEecCCcEEEEEEeCCccccceeeeeCCCCCC-CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc-----
Q 024868           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD-AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-----  151 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----  151 (261)
                      |.+++....|+-++++.+..        +.++.. .+.++++..++-..+|++|+.+|.|..||.++...+..+.     
T Consensus       148 ly~~gsg~evYRlNLEqGrf--------L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v  219 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRF--------LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV  219 (703)
T ss_pred             EEEeecCcceEEEEcccccc--------ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccccc
Confidence            44444555688888887764        333333 3788999999988899999999999999988765432221     


Q ss_pred             -ccCC-----ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868          152 -KAHK-----SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (261)
Q Consensus       152 -~~~~-----~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~  225 (261)
                       .+.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-......+|..+.|.+.+..-    .+...+...
T Consensus       220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~----~v~S~Dk~~  295 (703)
T KOG2321|consen  220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN----KVVSMDKRI  295 (703)
T ss_pred             CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc----eEEecchHH
Confidence             1222     499999999999999999999999999999998876654455689999998874432    244556678


Q ss_pred             EEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                      ++|||-.+|+....+. ....+..+++-|++-++
T Consensus       296 ~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~  328 (703)
T KOG2321|consen  296 LKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMF  328 (703)
T ss_pred             hhhcccccCCceeecc-ccCCcCceeeecCCceE
Confidence            9999999999875444 34568888888876554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.61  E-value=4.8e-13  Score=113.29  Aligned_cols=230  Identities=11%  Similarity=0.081  Sum_probs=160.0

Q ss_pred             CCCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCCCCeEE
Q 024868            1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (261)
Q Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (261)
                      +|+++.|..++.++.  ...++++|+.||        .|..|+....... ........+.....++.++...+.++.+|
T Consensus      1045 ~Ehs~~v~k~a~s~~--~~s~FvsgS~DG--------tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSE--HTSLFVSGSDDG--------TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             hhccccccceeecCC--CCceEEEecCCc--------eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence            366777777777664  257999999999        8888887543321 11122233333467899999999999999


Q ss_pred             EEecCCcEEEEEEeCCccccc-eeeeeCCCCCCCCCeEEE-EEee-CCc-EEEEeccCCeEEEEEccCceEEeec--ccc
Q 024868           80 CSTTNGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCL-SFSV-DGS-RFAAGGVDGHLRIMHWPSLRIILDE--PKA  153 (261)
Q Consensus        80 ~~~~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~-~~s~-~~~-~l~~~~~d~~i~~~d~~~~~~~~~~--~~~  153 (261)
                      +++.||.|.+.+++-...... ............+.+.++ +|.. ++. .++.+..-+.|..||+++....+..  ...
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence            999999999999976322111 111112222333444433 3433 333 6777778889999999877654433  334


Q ss_pred             CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC-CCcEEEEEECC
Q 024868          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDIS  232 (261)
Q Consensus       154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~-~d~~i~~~d~~  232 (261)
                      ++.|++++.+|.+.+++.|+..|.+.+||++-+.++..+......+++.+..+|--+.-- ..+.+++ ..+.|.+|++.
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S-~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQES-VSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCc-eEEEecccCCCceeeeecc
Confidence            578999999999999999999999999999999999888776667889888887655210 1134444 67889999999


Q ss_pred             CCeEEeeee
Q 024868          233 TWNKIGHKR  241 (261)
Q Consensus       233 ~~~~~~~~~  241 (261)
                      +|.....+.
T Consensus      1274 ~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1274 TGLRQTVLW 1282 (1431)
T ss_pred             cCcceEEEE
Confidence            886554443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=2.6e-13  Score=101.65  Aligned_cols=188  Identities=14%  Similarity=0.129  Sum_probs=139.7

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccC--CeEEE
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVD--GHLRI  138 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d--~~i~~  138 (261)
                      .+..|-.++.. |+ .|++|..+|.+.+|..+.+.....    ....+.....+..+.-++.. ..+++|+..  ..+.+
T Consensus       104 ~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss----~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen  104 GTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSS----KLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             ccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccc----cceeeecCCceeeeccCCCCCceEecCchhcccceee
Confidence            34555555543 33 677888999999999986543111    11122223456666666644 456668887  78999


Q ss_pred             EEccCceEEeeccccC---------CceeEEEEcCC--CCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEe
Q 024868          139 MHWPSLRIILDEPKAH---------KSVLDMDFSLD--SEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFS  206 (261)
Q Consensus       139 ~d~~~~~~~~~~~~~~---------~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~  206 (261)
                      ||+.+.+.++.-..-.         -.++++.|-|.  ...|++++.-+++++||.+.+ +++..+..... +++++...
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~  256 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLT  256 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC-cceeeeec
Confidence            9999887766544322         13568889887  789999999999999999865 46666665444 69999999


Q ss_pred             cCCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eeccCcCeeEEEEeeCCCEEeC
Q 024868          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      |+++.     ++++..-+.+..||+++++.+.. +.+..+.++++..+|.+++||.
T Consensus       257 p~gn~-----Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las  307 (412)
T KOG3881|consen  257 PSGNF-----IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLAS  307 (412)
T ss_pred             CCCcE-----EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEe
Confidence            99998     68888899999999999998765 7778899999999999999874

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.2e-12  Score=103.18  Aligned_cols=216  Identities=13%  Similarity=0.123  Sum_probs=130.8

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCC-CCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSS-RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-   82 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-   82 (261)
                      ++.....|+|++  ..+++..+.+ +..      .||.+|..+++.       ..+....+......|+|||+.++... 
T Consensus       188 ~~~~~p~wSpDG--~~~i~y~s~~~~~~------~Iyv~dl~tg~~-------~~lt~~~g~~~~~~~SPDG~~la~~~~  252 (419)
T PRK04043        188 GLNIFPKWANKE--QTAFYYTSYGERKP------TLYKYNLYTGKK-------EKIASSQGMLVVSDVSKDGSKLLLTMA  252 (419)
T ss_pred             CCeEeEEECCCC--CcEEEEEEccCCCC------EEEEEECCCCcE-------EEEecCCCcEEeeEECCCCCEEEEEEc
Confidence            367788999975  3334443333 222      899999877663       23333455667788999999876543 


Q ss_pred             cC--CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCce
Q 024868           83 TN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKSV  157 (261)
Q Consensus        83 ~d--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v  157 (261)
                      .+  ..|+++++.++.. ..     +  ..+........|+|||+.|+..+. .+  .|++.|+.+++.........   
T Consensus       253 ~~g~~~Iy~~dl~~g~~-~~-----L--T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---  321 (419)
T PRK04043        253 PKGQPDIYLYDTNTKTL-TQ-----I--TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---  321 (419)
T ss_pred             cCCCcEEEEEECCCCcE-EE-----c--ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---
Confidence            23  4677777766542 11     1  111122345689999998877753 22  68888888776633332211   


Q ss_pred             eEEEEcCCCCEEEEecCC---------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868          158 LDMDFSLDSEFLATTSTD---------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                      ....|+|||++|+..+..         ..|.+.|+.+++.. .+... . ......|+|||+.++.  ....+....+.+
T Consensus       322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~-~~~~p~~SPDG~~I~f--~~~~~~~~~L~~  396 (419)
T PRK04043        322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-G-VNQFPRFSSDGGSIMF--IKYLGNQSALGI  396 (419)
T ss_pred             cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-C-CcCCeEECCCCCEEEE--EEccCCcEEEEE
Confidence            124899999988876543         36888898887653 34332 1 2346889999997432  222234456888


Q ss_pred             EECCCCeEEeeeeccCcCeeEEEE
Q 024868          229 YDISTWNKIGHKRLLRKPASVLSI  252 (261)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~  252 (261)
                      .++...... .+....+.+...+|
T Consensus       397 ~~l~g~~~~-~l~~~~g~~~~p~W  419 (419)
T PRK04043        397 IRLNYNKSF-LFPLKVGKIQSIDW  419 (419)
T ss_pred             EecCCCeeE-EeecCCCccCCCCC
Confidence            888654443 34444455555444

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=6.7e-12  Score=93.63  Aligned_cols=216  Identities=17%  Similarity=0.236  Sum_probs=142.6

Q ss_pred             CCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCC
Q 024868           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQ  110 (261)
Q Consensus        34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~  110 (261)
                      ...|.+|.+|..++.+.     ...+-.+.+.++-++|+|+++.|.++..+   |.+..|.++...-...++..  ....
T Consensus        15 s~gI~v~~ld~~~g~l~-----~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~--~~~~   87 (346)
T COG2706          15 SQGIYVFNLDTKTGELS-----LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR--QTLP   87 (346)
T ss_pred             CCceEEEEEeCcccccc-----hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec--cccC
Confidence            34456777776665542     22334566789999999999999887654   77888888764222222221  1222


Q ss_pred             CCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEe---eccccCC----------ceeEEEEcCCCCEEEEecC-C
Q 024868          111 DAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIIL---DEPKAHK----------SVLDMDFSLDSEFLATTST-D  175 (261)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~---~~~~~~~----------~v~~~~~s~~~~~l~~~~~-d  175 (261)
                      . .+...++++++|++++++. ..|.|.++.++....+.   ....|.+          .+....+.|++++|++... -
T Consensus        88 g-~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~  166 (346)
T COG2706          88 G-SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT  166 (346)
T ss_pred             C-CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence            2 3337899999999999987 56789999886532211   1122222          2788999999999988764 3


Q ss_pred             CcEEEEEccCCcEEEEE--eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-eEEeeeec---------c
Q 024868          176 GSARIWKTEDGVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRL---------L  243 (261)
Q Consensus       176 ~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~---------~  243 (261)
                      ..|.+|++..|+....-  ....+...+.+.|+|++++.|    +...-+++|.+|..... ..+..++.         .
T Consensus       167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY----~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g  242 (346)
T COG2706         167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY----LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG  242 (346)
T ss_pred             ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE----EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence            57999999977653322  113344589999999999854    34455788999998763 22222221         1


Q ss_pred             CcCeeEEEEeeCCCEEeC
Q 024868          244 RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       244 ~~~v~~~~~s~dg~~la~  261 (261)
                      ......+.++|||++|.+
T Consensus       243 ~~~~aaIhis~dGrFLYa  260 (346)
T COG2706         243 TNWAAAIHISPDGRFLYA  260 (346)
T ss_pred             CCceeEEEECCCCCEEEE
Confidence            246778999999999863

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=8.2e-12  Score=93.17  Aligned_cols=238  Identities=11%  Similarity=0.153  Sum_probs=150.0

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-   84 (261)
                      .++-++|+|+.  ..+.++. ..+   ..+.+..+.+|.+.+.+..  +....+.++  +...++++++|++++++... 
T Consensus        41 nptyl~~~~~~--~~LY~v~-~~~---~~ggvaay~iD~~~G~Lt~--ln~~~~~g~--~p~yvsvd~~g~~vf~AnY~~  110 (346)
T COG2706          41 NPTYLAVNPDQ--RHLYVVN-EPG---EEGGVAAYRIDPDDGRLTF--LNRQTLPGS--PPCYVSVDEDGRFVFVANYHS  110 (346)
T ss_pred             CCceEEECCCC--CEEEEEE-ecC---CcCcEEEEEEcCCCCeEEE--eeccccCCC--CCeEEEECCCCCEEEEEEccC
Confidence            34557777752  2333333 221   1345688889988777622  122223322  34789999999999988764 


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCC----------CCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeec---
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDA----------GPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDE---  150 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~---  150 (261)
                      |.|.++-++........    .....|.          .-+....+.|++++|++.. .--.|.+|++..++.....   
T Consensus       111 g~v~v~p~~~dG~l~~~----v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~  186 (346)
T COG2706         111 GSVSVYPLQADGSLQPV----VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE  186 (346)
T ss_pred             ceEEEEEcccCCccccc----eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc
Confidence            88999999664322211    1111121          2278889999999998875 2235999999876543211   


Q ss_pred             cccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCC-cEEEEEee--------cCCCceEEEEEecCCCcceEEEEEee
Q 024868          151 PKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       151 ~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~~~--------~~~~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                      .......+.|.|+|++++.+..+ -+++|-+|..+.. .....++.        ........+..+|||+++|    ++.
T Consensus       187 v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY----asN  262 (346)
T COG2706         187 VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY----ASN  262 (346)
T ss_pred             cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE----Eec
Confidence            12233579999999999988766 4899999998863 22222221        1122467888999999853    344


Q ss_pred             CCCcEEEEEECCC--CeE--EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          221 GDKALLAVYDIST--WNK--IGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       221 ~~d~~i~~~d~~~--~~~--~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .....|.+|.+..  +++  +.....+........|+|+|++|++
T Consensus       263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia  307 (346)
T COG2706         263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA  307 (346)
T ss_pred             CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence            4444788888753  332  2223344455789999999999874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1.1e-12  Score=109.80  Aligned_cols=237  Identities=12%  Similarity=0.142  Sum_probs=150.0

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee-cCCCCCceEEEECC--CCCeEEEEe
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNP--SGDDFVCST   82 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~   82 (261)
                      +-..+.|+|-   ...++++..+.        .|.+||-+.+..-.    .... ......|+.+.+-.  |...+++++
T Consensus      1066 ~pk~~~~hpf---~p~i~~ad~r~--------~i~vwd~e~~~~l~----~F~n~~~~~t~Vs~l~liNe~D~aLlLtas 1130 (1387)
T KOG1517|consen 1066 PPKTLKFHPF---EPQIAAADDRE--------RIRVWDWEKGRLLN----GFDNGAFPDTRVSDLELINEQDDALLLTAS 1130 (1387)
T ss_pred             CCceeeecCC---CceeEEcCCcc--------eEEEEecccCceec----cccCCCCCCCccceeeeecccchhheeeec
Confidence            3455666663   34667776555        66677766554310    1011 11234688888854  556789999


Q ss_pred             cCCcEEEEEEeCCc-cccceeeeeCC---CCCC-CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC-c
Q 024868           83 TNGGCKLFEVYGGA-TDINLLAKKMP---PLQD-AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-S  156 (261)
Q Consensus        83 ~dg~i~i~~~~~~~-~~~~~~~~~~~---~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~  156 (261)
                      .||.|+||+-.... ...++...-..   .... .+.-.-+.|.....+|++++.-..|+|||.........+....+ .
T Consensus      1131 ~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL 1210 (1387)
T ss_pred             cCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcc
Confidence            99999999764432 22222211110   0111 11224467877665666666788999999988777666654443 5


Q ss_pred             eeEEEEcC-CCCEEEEecCCCcEEEEEccCCc---EEEEEeecCC-CceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          157 VLDMDFSL-DSEFLATTSTDGSARIWKTEDGV---AWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       157 v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      ++++.-+- .|+.+++|..||.|++||.+...   .+.....|.. .+|..+.+.+.|-..    +++++.+|.|++||+
T Consensus      1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~e----lvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGE----LVSGSQDGDIQLLDL 1286 (1387)
T ss_pred             ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcc----eeeeccCCeEEEEec
Confidence            77776543 47999999999999999998643   3444554443 138889998866542    589999999999999


Q ss_pred             CCCeEEeee--ecc---CcCeeEEEEeeCCCEEeC
Q 024868          232 STWNKIGHK--RLL---RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       232 ~~~~~~~~~--~~~---~~~v~~~~~s~dg~~la~  261 (261)
                      +........  ..+   ++.++++..+++...+|+
T Consensus      1287 R~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1287 RMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred             ccCcccccceeeeccccCccceeeeeccCCCeeee
Confidence            974322211  122   234888888888877763

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.57  E-value=2e-12  Score=99.61  Aligned_cols=159  Identities=16%  Similarity=0.228  Sum_probs=121.8

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-cEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      +.+..++..+..       ..+ +|.+.|.-..+..+++-++.|..|| .+-++|..+++.        ......-+.|.
T Consensus       342 kaFi~~~~~~~~-------iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--------kr~e~~lg~I~  405 (668)
T COG4946         342 KAFIMRPWDGYS-------IQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--------KRIEKDLGNIE  405 (668)
T ss_pred             cEEEECCCCCee-------EEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE--------EEeeCCccceE
Confidence            566666655542       122 4667788888888888899999998 899999998874        22223457899


Q ss_pred             EEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCC----cEEEEEccCCcEEEEE
Q 024868          117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFL  192 (261)
Q Consensus       117 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~  192 (261)
                      .+..+|+|++++++.....+.++|+.++.....-....+-|....|||+++++|-+--+|    .|+++|+.+++.....
T Consensus       406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            999999999999998888999999999987554444456799999999999999887665    6999999988876654


Q ss_pred             eecCCCceEEEEEecCCCcceE
Q 024868          193 TRNSDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       193 ~~~~~~~v~~~~~~p~~~~~~~  214 (261)
                      ....  .-.+.+|.||++++|.
T Consensus       486 T~ta--~DfsPaFD~d~ryLYf  505 (668)
T COG4946         486 TPTA--YDFSPAFDPDGRYLYF  505 (668)
T ss_pred             CCcc--cccCcccCCCCcEEEE
Confidence            4322  2456788888887654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=2.8e-13  Score=109.21  Aligned_cols=239  Identities=14%  Similarity=0.134  Sum_probs=164.5

Q ss_pred             CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCC-------eEEeeecCCCCCceEEEECCC
Q 024868            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-------LVTYVFDESEGDPMTIAVNPS   74 (261)
Q Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~   74 (261)
                      ++.....|++|+..   ..++++||.+|..      ++...+.++......+       ...+.+.+|...|.-+.|+.+
T Consensus        12 PnnvkL~c~~WNke---~gyIAcgG~dGlL------KVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~   82 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKE---SGYIACGGADGLL------KVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN   82 (1189)
T ss_pred             CCCceEEEEEEccc---CCeEEecccccee------EEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc
Confidence            45678899999985   6799999999933      6666666554433322       234678999999999999999


Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  154 (261)
                      .+.|.+...+|-|.+|-+..+.-...     ...-..++-|.++.|+.||..|+....||.|.+=.++ |..++...-..
T Consensus        83 ~QKLTtSDt~GlIiVWmlykgsW~EE-----MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg  156 (1189)
T KOG2041|consen   83 NQKLTTSDTSGLIIVWMLYKGSWCEE-----MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKG  156 (1189)
T ss_pred             cccccccCCCceEEEEeeecccHHHH-----HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcch
Confidence            99999999999999999988763221     2222345678999999999999999999998887664 44433322222


Q ss_pred             CceeEEEEcCCCCEEEEecCCCcEEEEEccCC-------cEEEEEee---cCCCceEEEEEe--------cCCCcceEEE
Q 024868          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-------VAWTFLTR---NSDEKIELCRFS--------KDGTKPFLFC  216 (261)
Q Consensus       155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~---~~~~~v~~~~~~--------p~~~~~~~~~  216 (261)
                      .....+.|++|.+.++.+-.+|.++++|.+..       .+.....+   ..+..+..+.|.        ||-..     
T Consensus       157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~-----  231 (1189)
T KOG2041|consen  157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR-----  231 (1189)
T ss_pred             heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE-----
Confidence            24568899999999998888999999997531       11111111   111124455554        34444     


Q ss_pred             EEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       217 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ++.+-.+|.+.+..-.+......+. .+..+....|+++|..||+
T Consensus       232 lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAv  275 (1189)
T KOG2041|consen  232 LAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAV  275 (1189)
T ss_pred             EEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEE
Confidence            4666677777776654433222222 3367788999999999985

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=3.8e-13  Score=105.60  Aligned_cols=180  Identities=15%  Similarity=0.231  Sum_probs=135.2

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCC-----C
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD-----A  112 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~-----~  112 (261)
                      .||.++.+.+.+      ...+.-..+.++++..++...+|++|+.+|.+-.||.+.......+... .....+     .
T Consensus       156 evYRlNLEqGrf------L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~-~~v~s~pg~~~~  228 (703)
T KOG2321|consen  156 EVYRLNLEQGRF------LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA-SSVNSHPGGDAA  228 (703)
T ss_pred             ceEEEEcccccc------ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc-cccCCCcccccc
Confidence            799999998886      2234444578999999999999999999999999999887653332211 111111     2


Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC--ceeEEEEcCC--CCEEEEecCCCcEEEEEccCCcE
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA  188 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~  188 (261)
                      ..|+++.|+-+|-.+++|..+|.+.+||+++.+++.. ..|..  +|..+.|.+.  ...+++. +...++|||-.+|+.
T Consensus       229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP  306 (703)
T ss_pred             CcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence            4589999999999999999999999999999888644 33333  7999999775  3344443 557899999999999


Q ss_pred             EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      ...+....  .+..+|+-|++-.     ++++.++..+..|=+..
T Consensus       307 ~asiEpt~--~lND~C~~p~sGm-----~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  307 MASIEPTS--DLNDFCFVPGSGM-----FFTANESSKMHTYYIPS  344 (703)
T ss_pred             eeeccccC--CcCceeeecCCce-----EEEecCCCcceeEEccc
Confidence            88887544  3899999999887     46666666666665543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.55  E-value=3e-13  Score=112.55  Aligned_cols=185  Identities=16%  Similarity=0.178  Sum_probs=142.5

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC-----ceEEEECCCCCeEEEEecCCcEEEEEEe
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-----PMTIAVNPSGDDFVCSTTNGGCKLFEVY   93 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~dg~i~i~~~~   93 (261)
                      ...++.+..+.        .++.+|.....+..      ..+ +...     ..-+.++++.-++++|+.-+.|.+|+..
T Consensus        99 ~k~i~l~~~~n--------s~~i~d~~~~~~~~------~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~  163 (967)
T KOG0974|consen   99 NKKIALVTSRN--------SLLIRDSKNSSVLS------KIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH  163 (967)
T ss_pred             cceEEEEEcCc--------eEEEEecccCceeh------hcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence            34566666666        67777776655411      111 1111     2223346666788999999999999997


Q ss_pred             CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe-eccccCCceeEEEEcCCCCEEEEe
Q 024868           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-DEPKAHKSVLDMDFSLDSEFLATT  172 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~  172 (261)
                      ....       ......|.+.+..+.|+-||+++++.+.|+++++|++++.+... ..++|...+..+.|+|+  .++++
T Consensus       164 ~dn~-------p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~  234 (967)
T KOG0974|consen  164 EDNK-------PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITV  234 (967)
T ss_pred             ccCC-------cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEe
Confidence            3332       12345678999999999999999999999999999999988755 56678889999999998  89999


Q ss_pred             cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      +.|.+.++|+.+ ++.+..+..|....++.++..++...     .++++.|+.+++||+..
T Consensus       235 gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~-----~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  235 GEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVII-----KVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceE-----EEeeccCcchhhhhhhc
Confidence            999999999764 55556888888778999999887776     79999999999999864

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.54  E-value=6.7e-13  Score=112.47  Aligned_cols=195  Identities=13%  Similarity=0.106  Sum_probs=135.7

Q ss_pred             eEEeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc
Q 024868           54 LVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (261)
Q Consensus        54 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (261)
                      .....+..|...+..++.++. +.++++|+.||+|++|+...-.................+++..+.+.+.+..+|+++.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            335677889999999998775 4999999999999999997654322222222222224678899999999999999999


Q ss_pred             CCeEEEEEccCc--e-----EEeecccc-CCc-eeEEEEcC-CCC-EEEEecCCCcEEEEEccCCcEEEEEee--cCCCc
Q 024868          133 DGHLRIMHWPSL--R-----IILDEPKA-HKS-VLDMDFSL-DSE-FLATTSTDGSARIWKTEDGVAWTFLTR--NSDEK  199 (261)
Q Consensus       133 d~~i~~~d~~~~--~-----~~~~~~~~-~~~-v~~~~~s~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~  199 (261)
                      ||.|++.+++..  +     ..+....+ .+. +..-++.. ... .++.+...+.|..||+++.....+++.  .++ .
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG-~ 1197 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG-L 1197 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc-c
Confidence            999999998752  1     11111111 123 33344433 233 677888889999999997765554432  234 5


Q ss_pred             eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee-ccCcCeeEEEEee
Q 024868          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISL  254 (261)
Q Consensus       200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~  254 (261)
                      |++++.+|.+.+     ++.|...|.+.+||++=+.++.... .+..++..+..+|
T Consensus      1198 vTSi~idp~~~W-----lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNW-----LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred             eeEEEecCCceE-----EEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence            999999999998     6889999999999999777664433 2335555555554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.50  E-value=2.5e-10  Score=88.12  Aligned_cols=213  Identities=13%  Similarity=0.118  Sum_probs=130.8

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec----------CCcEEEEEEeCCccccceeeeeCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMP  107 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~  107 (261)
                      .+..+|..+.++      ...+..-. ....+ ++||++.|+++..          +..|.+||..+.+....+......
T Consensus        28 ~v~ViD~~~~~v------~g~i~~G~-~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p   99 (352)
T TIGR02658        28 QVYTIDGEAGRV------LGMTDGGF-LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP   99 (352)
T ss_pred             eEEEEECCCCEE------EEEEEccC-CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence            788889888765      22222111 22234 9999998877665          678999999998764333221111


Q ss_pred             CCCCCCCeEEEEEeeCCcEEEEec-c-CCeEEEEEccCceEEeeccccC------------------C------------
Q 024868          108 PLQDAGPQKCLSFSVDGSRFAAGG-V-DGHLRIMHWPSLRIILDEPKAH------------------K------------  155 (261)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~-~-d~~i~~~d~~~~~~~~~~~~~~------------------~------------  155 (261)
                      ..........++++|||+++++.. . +..|.+.|+.+++.+..+....                  +            
T Consensus       100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN  179 (352)
T ss_pred             hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence            111122345789999999999876 3 6889999987766543221100                  0            


Q ss_pred             -ceeEE--------------EEcC-CCCEEEEecCCCcEEEEEccCC-----cEEEEEeec------CCCceEEEEEecC
Q 024868          156 -SVLDM--------------DFSL-DSEFLATTSTDGSARIWKTEDG-----VAWTFLTRN------SDEKIELCRFSKD  208 (261)
Q Consensus       156 -~v~~~--------------~~s~-~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~------~~~~v~~~~~~p~  208 (261)
                       .....              .|.+ +|+++..... |.|.+.|+...     +....+...      ......-++++|+
T Consensus       180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d  258 (352)
T TIGR02658       180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA  258 (352)
T ss_pred             eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence             00010              2234 7777766655 99999996432     222222211      1112445999999


Q ss_pred             CCcceEEEEEee-----CCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC-EEe
Q 024868          209 GTKPFLFCTVQR-----GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLA  260 (261)
Q Consensus       209 ~~~~~~~~~~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la  260 (261)
                      ++++|+.+.-.+     ...+.|.++|..+++.+..+.. +..+..++++|||+ +|.
T Consensus       259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~ly  315 (352)
T TIGR02658       259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLY  315 (352)
T ss_pred             CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEE
Confidence            998653211000     1225899999999998876664 56889999999999 554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.50  E-value=1.9e-11  Score=88.68  Aligned_cols=227  Identities=11%  Similarity=0.082  Sum_probs=143.1

Q ss_pred             ceEEEEecCCCCCC--CC--CceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC---CCC-eEEEEecCCcEEEE
Q 024868           19 VNLVVLGKSSRASS--SP--SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGD-DFVCSTTNGGCKLF   90 (261)
Q Consensus        19 ~~~~~~g~~~~~~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~i~   90 (261)
                      .+++|+|+..-.-+  +.  ..-+++.|+....++..  .....-. .+..+..+.|..   +|. .++-+..+|.|.+|
T Consensus        24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~--l~~~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~  100 (339)
T KOG0280|consen   24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSP--LDTLQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLY  100 (339)
T ss_pred             cceEEEeeEEecCCCCchheeccceEEEeecccccCc--cceeeee-cccccceeeeeeccCCccceeeeccccceEEEE
Confidence            34888886422111  11  12256666666655422  2222222 234567777753   555 45666778999999


Q ss_pred             EEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--EeeccccCCceeEEEEcC-CCC
Q 024868           91 EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSL-DSE  167 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~-~~~  167 (261)
                      ..........+..-....+. .....++.|++.+..++++..+|.+.+-+......  .+....|.-+.+-..|+. +.+
T Consensus       101 r~~~~~ss~~L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pn  179 (339)
T KOG0280|consen  101 RNDEDESSVHLRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPN  179 (339)
T ss_pred             eeccceeeeeecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCc
Confidence            88655432211110000000 01346788999999999999999998665443332  224556666788888876 567


Q ss_pred             EEEEecCCCcEEEEEcc-CCcEEEE-EeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC-CeEEeeeeccC
Q 024868          168 FLATTSTDGSARIWKTE-DGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLR  244 (261)
Q Consensus       168 ~l~~~~~d~~i~iwd~~-~~~~~~~-~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~  244 (261)
                      .+++|++|+.+..||++ .++.+.. .+.|.. .|.++.-+|.....    +++|+.|-.|++||.++ ++++. -....
T Consensus       180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~----I~TGsYDe~i~~~DtRnm~kPl~-~~~v~  253 (339)
T KOG0280|consen  180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTY----IATGSYDECIRVLDTRNMGKPLF-KAKVG  253 (339)
T ss_pred             eEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCce----EEEeccccceeeeehhcccCccc-cCccc
Confidence            89999999999999999 4444444 334444 48888877754431    79999999999999994 55553 33345


Q ss_pred             cCeeEEEEeeC
Q 024868          245 KPASVLSISLD  255 (261)
Q Consensus       245 ~~v~~~~~s~d  255 (261)
                      +.|+.+.++|.
T Consensus       254 GGVWRi~~~p~  264 (339)
T KOG0280|consen  254 GGVWRIKHHPE  264 (339)
T ss_pred             cceEEEEecch
Confidence            88999998885

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.49  E-value=6.6e-12  Score=98.68  Aligned_cols=172  Identities=15%  Similarity=0.202  Sum_probs=115.4

Q ss_pred             CeE-EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCC-eEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868           76 DDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        76 ~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      +++ ++-..++.|.+.|..+.+...        .+..... ...+.|+|||+++++++.||.|.++|+.+++.+......
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~--------~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G   77 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVA--------RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG   77 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEE--------EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEE--------EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC
Confidence            344 344567999999988776422        2222222 345789999999999999999999999999987666543


Q ss_pred             CCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEEEEeecC------CCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868          154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNS------DEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       154 ~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i  226 (261)
                       ....++++|+||++++++. ..+.+.++|.++.++++.+....      ...+..+..+|.... |   +++--+.+.|
T Consensus        78 -~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-f---Vv~lkd~~~I  152 (369)
T PF02239_consen   78 -GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-F---VVNLKDTGEI  152 (369)
T ss_dssp             -SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-E---EEEETTTTEE
T ss_pred             -CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-E---EEEEccCCeE
Confidence             3568899999999998776 57999999999999998876431      234677877888875 2   4555667899


Q ss_pred             EEEECCCCeEEe-eeeccCcCeeEEEEeeCCCEEe
Q 024868          227 AVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       227 ~~~d~~~~~~~~-~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .+.|....+.+. ..........+..|+|+|+|++
T Consensus       153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~  187 (369)
T PF02239_consen  153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL  187 (369)
T ss_dssp             EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred             EEEEeccccccceeeecccccccccccCcccceee
Confidence            999987765442 2233446778999999999875

...

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.47  E-value=8e-14  Score=113.73  Aligned_cols=190  Identities=14%  Similarity=0.130  Sum_probs=137.9

Q ss_pred             eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  137 (261)
                      .+.+|...|+|+.|...|.++++|++|..++||..++..+.       ...-.|.+.++.++.+.+..++++++.|..|+
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-------As~rGhs~ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-------ASCRGHSGDITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-------ccCCCCccccchhccchhhhhhhhcccCceEE
Confidence            46689999999999999999999999999999998887751       22334568899999999999999999999999


Q ss_pred             EEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC--------------CcEEEEEeecC-------
Q 024868          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED--------------GVAWTFLTRNS-------  196 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~--------------~~~~~~~~~~~-------  196 (261)
                      +|-+..+..+..+.+|.+.|++++|+|-.    +.+.||++++||.+-              +.....+....       
T Consensus       258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            99999999988888999999999999954    778899999999871              00110000000       


Q ss_pred             -----CC---ceEEEEEecCCCcceEE-------EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          197 -----DE---KIELCRFSKDGTKPFLF-------CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       197 -----~~---~v~~~~~~p~~~~~~~~-------~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                           .+   ....++|....- .|+.       ..+++-.+-.+.+|++.+|...+....|...+..+.++|-+..+
T Consensus       334 gs~d~ea~n~e~~~l~~~~~~l-if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri  410 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAWRSNLL-IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI  410 (1113)
T ss_pred             ccCCcccccchhhHhhhhccce-EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence                 00   011111211110 0000       02334456678899999998887778888888888888855443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.46  E-value=3.3e-11  Score=95.02  Aligned_cols=192  Identities=14%  Similarity=0.109  Sum_probs=144.1

Q ss_pred             cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEE------CC--------------CCCe
Q 024868           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV------NP--------------SGDD   77 (261)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~--------------~~~~   77 (261)
                      ...++|...++|        .+..|+....++..+-.+...+   ++...+..|      +|              +-..
T Consensus         4 ~~~~~A~~~~~g--------~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~   72 (541)
T KOG4547|consen    4 ALDYFALSTGDG--------RLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSM   72 (541)
T ss_pred             hhheEeecCCCC--------eEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceE
Confidence            366888888888        8999998877763322222222   233444444      22              2234


Q ss_pred             EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCce
Q 024868           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  157 (261)
                      ++-|...|.|.+|+...++...+     ...-.|.+.|.++.++.+-..|.+++.|..+..|+......+.........+
T Consensus        73 lvlgt~~g~v~~ys~~~g~it~~-----~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~  147 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGGEITAK-----LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV  147 (541)
T ss_pred             EEeecCCccEEEEEecCCeEEEE-----EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence            66777789999999998875333     3334567899999999999999999999999999999988888877777789


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecC-----CCcceEEEEEeeCCCcEEEEEECC
Q 024868          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD-----GTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      .+++.+|||..+++++  ++|++||+++++.+..+.+|.. +|+++.|-.+     |.++    +.+...+.-+.+|-++
T Consensus       148 ~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~v----Lssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  148 SSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYV----LSSAAAERGITVWVVE  220 (541)
T ss_pred             ceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEecccccccee----eeccccccceeEEEEE
Confidence            9999999999999986  7999999999999999998765 7999999887     6662    3444444456666654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.45  E-value=8.5e-12  Score=104.16  Aligned_cols=175  Identities=12%  Similarity=0.132  Sum_probs=123.6

Q ss_pred             ECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec
Q 024868           71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (261)
Q Consensus        71 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  150 (261)
                      +.-+.++++....+..+.+||........+....+...   -....-+.++++.-++++|+.-+.|.+|+....+....+
T Consensus        95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~---l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l  171 (967)
T KOG0974|consen   95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT---LYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL  171 (967)
T ss_pred             hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE---EEeEEEEeccCcEEEEEeccccccEEEEeccccCCccee
Confidence            33445677777888889999987765422211111000   012233445667778999999999999998744443457


Q ss_pred             cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (261)
Q Consensus       151 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~  229 (261)
                      .+|.+.+.++.|+.||+++++.|+|.++++|++.+.+... ..-+| .+.++.++|+|+  .     ++++++|.+.++|
T Consensus       172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRvw~~~~~~n--~-----i~t~gedctcrvW  243 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-SARVWACCFLPN--R-----IITVGEDCTCRVW  243 (967)
T ss_pred             cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-cceeEEEEeccc--e-----eEEeccceEEEEE
Confidence            7888999999999999999999999999999999988766 44444 447999999998  4     6999999999999


Q ss_pred             ECCCCeEEeeeeccC-cCeeEEEEeeCCC
Q 024868          230 DISTWNKIGHKRLLR-KPASVLSISLDGK  257 (261)
Q Consensus       230 d~~~~~~~~~~~~~~-~~v~~~~~s~dg~  257 (261)
                      +... +.+..+..|. ..+..++..++.-
T Consensus       244 ~~~~-~~l~~y~~h~g~~iw~~~~~~~~~  271 (967)
T KOG0974|consen  244 GVNG-TQLEVYDEHSGKGIWKIAVPIGVI  271 (967)
T ss_pred             eccc-ceehhhhhhhhcceeEEEEcCCce
Confidence            7653 3333444443 4566666655443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=4e-11  Score=94.12  Aligned_cols=224  Identities=15%  Similarity=0.225  Sum_probs=140.5

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEe-
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CST-   82 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-   82 (261)
                      ..|..++++|.|+...+.+.--..+  |.+..++||.+-.....   .+.....+  ....=-.+.|++-|.-|+ .++ 
T Consensus       166 ~~i~~f~lSpgp~~~~vAvyvPe~k--GaPa~vri~~~~~~~~~---~~~a~ksF--Fkadkvqm~WN~~gt~LLvLast  238 (566)
T KOG2315|consen  166 SGITMLSLSPGPEPPFVAVYVPEKK--GAPASVRIYKYPEEGQH---QPVANKSF--FKADKVQMKWNKLGTALLVLAST  238 (566)
T ss_pred             cceeeEEecCCCCCceEEEEccCCC--CCCcEEEEecccccccc---chhhhccc--cccceeEEEeccCCceEEEEEEE
Confidence            3466677777764333333333333  56777778777622211   11111111  112223577888766332 222 


Q ss_pred             -cC---------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe--ccCCeEEEEEccCceEEeec
Q 024868           83 -TN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG--GVDGHLRIMHWPSLRIILDE  150 (261)
Q Consensus        83 -~d---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~  150 (261)
                       -|         .++++.++++...        ...+...++|.++.|+|+++.++++  -.--.+.++|++ ++.+..+
T Consensus       239 dVDktn~SYYGEq~Lyll~t~g~s~--------~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df  309 (566)
T KOG2315|consen  239 DVDKTNASYYGEQTLYLLATQGESV--------SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF  309 (566)
T ss_pred             eecCCCccccccceEEEEEecCceE--------EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC
Confidence             12         3688888874443        3345567999999999999887765  355679999974 5655544


Q ss_pred             cccCCceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC----CC
Q 024868          151 PKAHKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG----DK  223 (261)
Q Consensus       151 ~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~----~d  223 (261)
                      .  .++-..+-|+|.|++++.++-+   |.+-|||+.+.+++..+...   ..+-+.|+|||+++ +  .++.+    .|
T Consensus       310 ~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~f-l--TATTaPRlrvd  381 (566)
T KOG2315|consen  310 P--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYF-L--TATTAPRLRVD  381 (566)
T ss_pred             C--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEE-E--EEeccccEEec
Confidence            3  4566788999999999887754   78999999998888877643   25668999999983 2  22322    47


Q ss_pred             cEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      +.++||+.. |..+...... .....+.|-|
T Consensus       382 Ng~Kiwhyt-G~~l~~~~f~-sEL~qv~W~P  410 (566)
T KOG2315|consen  382 NGIKIWHYT-GSLLHEKMFK-SELLQVEWRP  410 (566)
T ss_pred             CCeEEEEec-Cceeehhhhh-HhHhheeeee
Confidence            789999985 5554322221 2566777765

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.43  E-value=7.9e-11  Score=87.42  Aligned_cols=238  Identities=13%  Similarity=0.169  Sum_probs=148.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC------------CCceEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIAV   71 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~   71 (261)
                      ..-|.++.|...   +.++++|..+|        ++-.|......-. +-.....++.|.            ..|..+.|
T Consensus        25 adiis~vef~~~---Ge~LatGdkgG--------RVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw   92 (433)
T KOG1354|consen   25 ADIISAVEFDHY---GERLATGDKGG--------RVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRW   92 (433)
T ss_pred             hcceeeEEeecc---cceEeecCCCC--------eEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhcee
Confidence            345778888875   66999999999        6666654332210 111122233333            34889999


Q ss_pred             CCCCC--eEEEEecCCcEEEEEEeCCccccc-------------------eee----------eeCCCCCCCCCeEEEEE
Q 024868           72 NPSGD--DFVCSTTNGGCKLFEVYGGATDIN-------------------LLA----------KKMPPLQDAGPQKCLSF  120 (261)
Q Consensus        72 ~~~~~--~l~~~~~dg~i~i~~~~~~~~~~~-------------------~~~----------~~~~~~~~~~~v~~~~~  120 (261)
                      .++++  .++..+.|.+|++|.+........                   .+.          .....-.|.--|+++.+
T Consensus        93 ~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~  172 (433)
T KOG1354|consen   93 LDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV  172 (433)
T ss_pred             cCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee
Confidence            88654  455667899999999976543110                   000          00111123445789999


Q ss_pred             eeCCcEEEEeccCCeEEEEEccCceE---EeeccccC-----CceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEE--
Q 024868          121 SVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAW--  189 (261)
Q Consensus       121 s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~-----~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~--  189 (261)
                      +.|+..++++ .|=.|.+|.++-...   +..+..+.     .-|++..|+|. -+.++-.+..|+|++-|++.....  
T Consensus       173 NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~  251 (433)
T KOG1354|consen  173 NSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA  251 (433)
T ss_pred             cCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence            9999999888 677899998864322   22333332     24788999994 567777778899999999843211  


Q ss_pred             --EEEeecC-----------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC-CCeEEeeeeccCc----------
Q 024868          190 --TFLTRNS-----------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRK----------  245 (261)
Q Consensus       190 --~~~~~~~-----------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~----------  245 (261)
                        +.+....           -..|..+.|+++|++     +++... -+|++||+. ..+++.+.+.|..          
T Consensus       252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGry-----ilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE  325 (433)
T KOG1354|consen  252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-----ILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE  325 (433)
T ss_pred             hhhhhccccCCcchhhHHHHhhhhhceEEccCCcE-----EEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhh
Confidence              1111111           124788999999998     454443 589999994 4556666665531          


Q ss_pred             -----CeeEEEEeeCCCEEe
Q 024868          246 -----PASVLSISLDGKYLA  260 (261)
Q Consensus       246 -----~v~~~~~s~dg~~la  260 (261)
                           .-..++|+-++.+++
T Consensus       326 nD~IfdKFec~~sg~~~~v~  345 (433)
T KOG1354|consen  326 NDAIFDKFECSWSGNDSYVM  345 (433)
T ss_pred             ccchhheeEEEEcCCcceEe
Confidence                 113477887776654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.42  E-value=2.9e-09  Score=79.86  Aligned_cols=221  Identities=16%  Similarity=0.145  Sum_probs=137.5

Q ss_pred             EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC-CCCCeEEEEecCCcE
Q 024868            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-PSGDDFVCSTTNGGC   87 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i   87 (261)
                      +..|.+.  .+.++++.-..+        +|+.+++.+...       ..+...  ....+++. +++ .|+.+...+ +
T Consensus         4 gp~~d~~--~g~l~~~D~~~~--------~i~~~~~~~~~~-------~~~~~~--~~~G~~~~~~~g-~l~v~~~~~-~   62 (246)
T PF08450_consen    4 GPVWDPR--DGRLYWVDIPGG--------RIYRVDPDTGEV-------EVIDLP--GPNGMAFDRPDG-RLYVADSGG-I   62 (246)
T ss_dssp             EEEEETT--TTEEEEEETTTT--------EEEEEETTTTEE-------EEEESS--SEEEEEEECTTS-EEEEEETTC-E
T ss_pred             ceEEECC--CCEEEEEEcCCC--------EEEEEECCCCeE-------EEEecC--CCceEEEEccCC-EEEEEEcCc-e
Confidence            3566653  366777776677        999999988763       112211  26777887 565 455555555 6


Q ss_pred             EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--------CeEEEEEccCceEEeeccccCCceeE
Q 024868           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWPSLRIILDEPKAHKSVLD  159 (261)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~v~~  159 (261)
                      .++|..+++.... ... ..........+++++.|+|++.++....        |.+..++.. ++. ......-.....
T Consensus        63 ~~~d~~~g~~~~~-~~~-~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNG  138 (246)
T PF08450_consen   63 AVVDPDTGKVTVL-ADL-PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNG  138 (246)
T ss_dssp             EEEETTTTEEEEE-EEE-ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEE
T ss_pred             EEEecCCCcEEEE-eec-cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccc
Confidence            6668777643111 111 1111124567899999999977665432        557777765 443 333333445789


Q ss_pred             EEEcCCCCEEE-EecCCCcEEEEEccCCcE----EEEEeecCC--CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          160 MDFSLDSEFLA-TTSTDGSARIWKTEDGVA----WTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       160 ~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~----~~~~~~~~~--~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      ++|+|+++.|+ +-+..+.|..+++.....    ...+.....  ...-.+++..+|+.     .++....+.|.++|.+
T Consensus       139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l-----~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL-----WVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E-----EEEEETTTEEEEEETT
T ss_pred             eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE-----EEEEcCCCEEEEECCC
Confidence            99999998775 556778899999863221    122211111  13778999999986     2444456789999987


Q ss_pred             CCeEEeeeeccCcCeeEEEEe-eCCCEEe
Q 024868          233 TWNKIGHKRLLRKPASVLSIS-LDGKYLA  260 (261)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~s-~dg~~la  260 (261)
                       |+.+..+......+++++|. ++.+.|.
T Consensus       214 -G~~~~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  214 -GKLLREIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             -SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             -ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence             88887777665689999995 6766654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.42  E-value=2.3e-10  Score=82.32  Aligned_cols=198  Identities=16%  Similarity=0.082  Sum_probs=128.5

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccc
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~   98 (261)
                      .+++.||..|        +.-.|.+.+.+.     ..+....|...|+-+.=..+ .-.+..++.|.++++.+++.+...
T Consensus        85 ~~la~gG~~g--------~fd~~~~~tn~~-----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   85 VTLADGGASG--------QFDLFACNTNDG-----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             cEEEeccccc--------eeeeecccCccc-----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence            4677887777        666666654432     12233334443332221112 224566788999999999876531


Q ss_pred             cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-Eee-c-cccCCceeEEEEcCCCCEEEEecCC
Q 024868           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILD-E-PKAHKSVLDMDFSLDSEFLATTSTD  175 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~d  175 (261)
                      ...-      .+ .-.+.++.+++|++++++.+....|..|.+..... +.. . ......-.+.+|+.....+|++..|
T Consensus       152 ~~~h------~~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd  224 (344)
T KOG4532|consen  152 FAVH------NQ-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQD  224 (344)
T ss_pred             ceee------cc-ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecC
Confidence            1110      00 12378899999999999999999999999875432 222 1 1222345788999999999999999


Q ss_pred             CcEEEEEccCCcEEE----EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          176 GSARIWKTEDGVAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       176 ~~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      |.+.|||++......    ....++.+.++.+.|+|-|..-+   ++-...-+.+.+.|+++++..+.+
T Consensus       225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL---Lf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL---LFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE---EEEecCcceEEEEEcccCceeeEE
Confidence            999999998643222    22345566799999999776532   344555678999999988765433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.39  E-value=1.3e-11  Score=93.12  Aligned_cols=166  Identities=15%  Similarity=0.155  Sum_probs=117.3

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC---eEEEEEc
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHW  141 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~~d~  141 (261)
                      ....+..+++++++|++..+....++++.......++.    .........+.+.|..+...+..+..-|   .+.+|..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~----~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL----DVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceee----eEeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            34556678889999998888888888887665422221    1112233445566666555555554444   4555554


Q ss_pred             cCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                      ..+.. ..+.+|-+.+..++|+||+++|+++..|..|++-....--.+..+...+..-|..++.-++-.      +++++
T Consensus       140 ~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~------LlS~s  212 (390)
T KOG3914|consen  140 DSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL------LLSGS  212 (390)
T ss_pred             cccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce------eeecC
Confidence            44433 456677789999999999999999999999999888777777777664444699998876543      58999


Q ss_pred             CCcEEEEEECCCCeEEeeee
Q 024868          222 DKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       222 ~d~~i~~~d~~~~~~~~~~~  241 (261)
                      .|+++++||+++|+.+.++.
T Consensus       213 GD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCcEEEEecccCCcccccc
Confidence            99999999999999875443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.38  E-value=9.2e-11  Score=85.24  Aligned_cols=209  Identities=15%  Similarity=0.089  Sum_probs=130.7

Q ss_pred             eeeEEEEEeeCCcce-EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            6 TVTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .++.+.|...+.... .++.+...|      .+.++..+.........++....+.  .....++.|++.+..++++..+
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G------~i~~~r~~~~~ss~~L~~ls~~ki~--~~~~lslD~~~~~~~i~vs~s~  142 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARG------QIQLYRNDEDESSVHLRGLSSKKIS--VVEALSLDISTSGTKIFVSDSR  142 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccc------eEEEEeeccceeeeeecccchhhhh--heeeeEEEeeccCceEEEEcCC
Confidence            355666766554333 444555555      2244444443333211221111111  1135678899999999999888


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEcc-CceEEee-ccccCCceeEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP-SLRIILD-EPKAHKSVLDMD  161 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~-~~~~~~~-~~~~~~~v~~~~  161 (261)
                      |.+.+-+......     ...+..-.|.-+.....|+- +.+.+.+|+.|+.+.-||++ .++.+.. ...|...|.++.
T Consensus       143 G~~~~v~~t~~~l-----e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~  217 (339)
T KOG0280|consen  143 GSISGVYETEMVL-----EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY  217 (339)
T ss_pred             CcEEEEecceeee-----eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence            9888544433321     11122233455667777876 45789999999999999998 3444444 345666899998


Q ss_pred             EcC-CCCEEEEecCCCcEEEEEcc-CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          162 FSL-DSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       162 ~s~-~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      -+| .+.++++|+.|..|++||.+ .++++..-..  .+.|+.+.++|.-...+   ++++..+| .+|-+...
T Consensus       218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v--~GGVWRi~~~p~~~~~l---L~~CMh~G-~ki~~~~~  285 (339)
T KOG0280|consen  218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV--GGGVWRIKHHPEIFHRL---LAACMHNG-AKILDSSD  285 (339)
T ss_pred             cCCCCCceEEEeccccceeeeehhcccCccccCcc--ccceEEEEecchhhhHH---HHHHHhcC-ceEEEecc
Confidence            877 68899999999999999999 5777765443  34599999999765321   24444444 56666554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=2.1e-10  Score=90.19  Aligned_cols=204  Identities=13%  Similarity=0.118  Sum_probs=128.7

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC--CeEEE-----EecCCcEEEEEEeCCccccceeeeeCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG--DDFVC-----STTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  110 (261)
                      +++.|+..+-.       ...-+-|...+..+.++|.+  ..+++     .+.-+.|+||....... ....  ....+-
T Consensus       147 ev~f~~~~~f~-------~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~-~~~~--a~ksFF  216 (566)
T KOG2315|consen  147 EVQFYDLGSFK-------TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ-HQPV--ANKSFF  216 (566)
T ss_pred             eEEEEecCCcc-------ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc-cchh--hhcccc
Confidence            66777766533       11223346778899998863  34443     23346899998863221 1100  011111


Q ss_pred             CCCCeEEEEEeeCCcEE-EEec--cC---------CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe--cCCC
Q 024868          111 DAGPQKCLSFSVDGSRF-AAGG--VD---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT--STDG  176 (261)
Q Consensus       111 ~~~~v~~~~~s~~~~~l-~~~~--~d---------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~  176 (261)
                      ..+. ..+.|++-|.-| +.++  .|         .+++++++. +.....-....++|+++.|+|+++-++++  -.=.
T Consensus       217 kadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPA  294 (566)
T KOG2315|consen  217 KADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPA  294 (566)
T ss_pred             ccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccc
Confidence            1222 457899876532 2222  22         368888877 44333344557899999999999877654  3456


Q ss_pred             cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868          177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG  256 (261)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg  256 (261)
                      .+.|||++ +.++..+..   ++-+++-|+|.|+++.+  .--|.-.|.+-+||+.+.+++..+...  ..+-+.|+|||
T Consensus       295 kvtifnlr-~~~v~df~e---gpRN~~~fnp~g~ii~l--AGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdG  366 (566)
T KOG2315|consen  295 KVTIFNLR-GKPVFDFPE---GPRNTAFFNPHGNIILL--AGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDG  366 (566)
T ss_pred             eEEEEcCC-CCEeEeCCC---CCccceEECCCCCEEEE--eecCCCCCceEEEeccchhhccccccC--CceEEEEcCCC
Confidence            89999986 677766642   35678899999998321  223445789999999998877655443  34568999999


Q ss_pred             CEEeC
Q 024868          257 KYLAM  261 (261)
Q Consensus       257 ~~la~  261 (261)
                      +++++
T Consensus       367 e~flT  371 (566)
T KOG2315|consen  367 EYFLT  371 (566)
T ss_pred             cEEEE
Confidence            99864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=4e-12  Score=98.07  Aligned_cols=213  Identities=15%  Similarity=0.156  Sum_probs=149.3

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC---CceEEEECCCC-CeE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSG-DDF   78 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~l   78 (261)
                      ..+||..++..|..  ...+.+++.++        .+..+|..........  . .-..+..   ....++..|.. ..+
T Consensus       231 h~g~vhklav~p~s--p~~f~S~geD~--------~v~~~Dlr~~~pa~~~--~-cr~~~~~~~v~L~~Ia~~P~nt~~f  297 (559)
T KOG1334|consen  231 HEGPVHKLAVEPDS--PKPFLSCGEDA--------VVFHIDLRQDVPAEKF--V-CREADEKERVGLYTIAVDPRNTNEF  297 (559)
T ss_pred             ccCccceeeecCCC--CCccccccccc--------ceeeeeeccCCcccee--e-eeccCCccceeeeeEecCCCCcccc
Confidence            46788888887763  56677888888        8888887655421111  1 1122222   46788899954 478


Q ss_pred             EEEecCCcEEEEEEeCCccc------cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC--c------
Q 024868           79 VCSTTNGGCKLFEVYGGATD------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--L------  144 (261)
Q Consensus        79 ~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~--~------  144 (261)
                      ++++.|..+++||...-...      .+........ .....|++++|+.++.-++++..|-.|+++.-..  +      
T Consensus       298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~  376 (559)
T KOG1334|consen  298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS  376 (559)
T ss_pred             ccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence            99999999999998765432      1111111111 2345789999999888777777888899985322  1      


Q ss_pred             ----eEEee-ccccCC--ceeEEEE-cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEE
Q 024868          145 ----RIILD-EPKAHK--SVLDMDF-SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (261)
Q Consensus       145 ----~~~~~-~~~~~~--~v~~~~~-s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~  216 (261)
                          ..... +++|..  .|..+-| -|...++++|++-|.|.||+-.+++.++.+.+... -|+|+.=+|--..     
T Consensus       377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~Pv-----  450 (559)
T KOG1334|consen  377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPV-----  450 (559)
T ss_pred             cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCch-----
Confidence                11122 344443  4788876 67889999999999999999999999988887655 6889888886665     


Q ss_pred             EEeeCCCcEEEEEECCCCe
Q 024868          217 TVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       217 ~~~~~~d~~i~~~d~~~~~  235 (261)
                      +++++-|..|+||-..+.+
T Consensus       451 LAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  451 LASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             hhccCCccceeeecCCccc
Confidence            7999999999999975433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=5.2e-09  Score=80.99  Aligned_cols=192  Identities=11%  Similarity=0.067  Sum_probs=122.3

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCC-----CCCceEEEECCCCCeEEEEec--CCcEEEEEEeCCccccceee-------
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDES-----EGDPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLA-------  103 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~-------  103 (261)
                      .|..||..+.+.    .....+...     ......++++|||++|++...  +..+.+.|+.+++.......       
T Consensus        78 ~V~v~D~~t~~~----~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy  153 (352)
T TIGR02658        78 YVEVIDPQTHLP----IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF  153 (352)
T ss_pred             EEEEEECccCcE----EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence            788889888775    112222111     123457899999999987763  57899999987754111000       


Q ss_pred             -----------------------------eeCCCCCC-CCCe-EEEEEee-CCcEEEEeccCCeEEEEEccCce-----E
Q 024868          104 -----------------------------KKMPPLQD-AGPQ-KCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR-----I  146 (261)
Q Consensus       104 -----------------------------~~~~~~~~-~~~v-~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~-----~  146 (261)
                                                   .....+.. ..++ ....|++ +|+++.+... |+|++.|+...+     .
T Consensus       154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~  232 (352)
T TIGR02658       154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA  232 (352)
T ss_pred             EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence                                         00000000 0000 0013455 7877777755 999999964322     2


Q ss_pred             Eeeccc-------cCCceeEEEEcCCCCEEEEec----------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCC
Q 024868          147 ILDEPK-------AHKSVLDMDFSLDSEFLATTS----------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (261)
Q Consensus       147 ~~~~~~-------~~~~v~~~~~s~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~  209 (261)
                      ......       ..+...-++++|+++.++...          ..+.|.++|..+++.+..+....  .+..++++||+
T Consensus       233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dg  310 (352)
T TIGR02658       233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDA  310 (352)
T ss_pred             eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCC
Confidence            111110       112344599999999888742          12579999999999999887543  58999999999


Q ss_pred             C-cceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          210 T-KPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       210 ~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      + ++    ..+...++.|.++|..+++.++.+
T Consensus       311 kp~l----yvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       311 KPLL----YALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CeEE----EEeCCCCCcEEEEECcCCeEEeee
Confidence            9 52    245556788999999999998876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.33  E-value=4.2e-09  Score=93.35  Aligned_cols=167  Identities=10%  Similarity=0.065  Sum_probs=109.8

Q ss_pred             CceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeee-------CCCCCCCCCeEEEEEeeCCcEEEEe-ccCCe
Q 024868           65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-------MPPLQDAGPQKCLSFSVDGSRFAAG-GVDGH  135 (261)
Q Consensus        65 ~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~  135 (261)
                      ....++++| ++..+++...++.|++||..++......-...       ............++++|+++.|+++ ..++.
T Consensus       684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            356899999 45555666677889999987654311000000       0000112345789999999855544 56789


Q ss_pred             EEEEEccCceEEeecc------------c-c--------CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee
Q 024868          136 LRIMHWPSLRIILDEP------------K-A--------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR  194 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~------------~-~--------~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  194 (261)
                      |++||+.++.......            . .        ......++++++|+++++-+.++.|++||..++........
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence            9999988765321100            0 0        01246899999999888888899999999987765533211


Q ss_pred             cC------------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          195 NS------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       195 ~~------------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      ..            -.....++++++|+.     +++...++.|++||+++++.
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~l-----yVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRL-----FVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCE-----EEEECCCCEEEEEECCCCcc
Confidence            10            013678999999985     46778889999999988764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.31  E-value=9.1e-09  Score=91.32  Aligned_cols=235  Identities=12%  Similarity=0.005  Sum_probs=137.5

Q ss_pred             EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCe-EEee------ecCCCCCceEEEECCCCCeEEEE
Q 024868            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPL-VTYV------FDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~------~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      .+++.+.  +..+.++-...+        +|..+|..+........ ...-      -...-.....+++.++++.|+++
T Consensus       572 gvavd~~--~g~lyVaDs~n~--------rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa  641 (1057)
T PLN02919        572 KLAIDLL--NNRLFISDSNHN--------RIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA  641 (1057)
T ss_pred             eEEEECC--CCeEEEEECCCC--------eEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence            3555543  244556555555        78888876543210000 0000      00112346889999988877665


Q ss_pred             ec-CCcEEEEEEeCCccccceeeeeCC--CC--------CCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEee
Q 024868           82 TT-NGGCKLFEVYGGATDINLLAKKMP--PL--------QDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILD  149 (261)
Q Consensus        82 ~~-dg~i~i~~~~~~~~~~~~~~~~~~--~~--------~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~  149 (261)
                      .. .+.|+++|..++... .+...-..  ..        ........++++| ++..+++...++.|++||..++.....
T Consensus       642 Dt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~  720 (1057)
T PLN02919        642 DTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF  720 (1057)
T ss_pred             eCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            54 467888888665421 11000000  00        0012346899999 566666666788999999876643211


Q ss_pred             c--------cc------cCCceeEEEEcCCCCEE-EEecCCCcEEEEEccCCcEEEEEeec------------C------
Q 024868          150 E--------PK------AHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRN------------S------  196 (261)
Q Consensus       150 ~--------~~------~~~~v~~~~~s~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~------------~------  196 (261)
                      .        ..      .......++++|+++.| ++-+.++.|++||+.++.......+.            .      
T Consensus       721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence            0        00      01235679999999854 45566789999999876532111000            0      


Q ss_pred             --CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc--------------CcCeeEEEEeeCCCEEe
Q 024868          197 --DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL--------------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       197 --~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~--------------~~~v~~~~~s~dg~~la  260 (261)
                        -.....++++++|..     .++...++.|++||..++.... +.+.              -.....++++++|+.++
T Consensus       801 ~~l~~P~Gvavd~dG~L-----YVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV  874 (1057)
T PLN02919        801 VLLQHPLGVLCAKDGQI-----YVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV  874 (1057)
T ss_pred             hhccCCceeeEeCCCcE-----EEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence              012468899999985     4667788999999998876542 2211              12467899999998654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=3.1e-10  Score=89.34  Aligned_cols=184  Identities=14%  Similarity=0.118  Sum_probs=131.7

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-----------CC
Q 024868           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------DG  134 (261)
Q Consensus        66 v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d~  134 (261)
                      -+-+.|||-|.+|++-...| |.+|--.+...        ...+. +..|.-+.|||..++|++-+.           ..
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r--------~~RF~-Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR--------IQRFY-HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHH--------HHhcc-CCCceeeecCCccceEEEecCCccccCcccCCCc
Confidence            45789999999999998888 99997766543        22222 346788999999999998541           24


Q ss_pred             eEEEEEccCceEEeeccccCC--c-eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          135 HLRIMHWPSLRIILDEPKAHK--S-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~--~-v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      .+.|||+++|.....+....+  . -.-..||.|++++|--.. .+|.||+..+..++..-..... .|....|+|.+..
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~-gIr~FswsP~~~l  360 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKIS-GIRDFSWSPTSNL  360 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCc-cccCcccCCCcce
Confidence            699999999987666554222  2 234789999999998765 6699999776444332222223 4899999999886


Q ss_pred             ceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +...+--+...-..+.+..+.+++.+++...+.-.-..+.|-.+|.||++
T Consensus       361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcv  410 (698)
T KOG2314|consen  361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCV  410 (698)
T ss_pred             EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEE
Confidence            32222222333457888888888888777766666677899999999974

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=3.2e-11  Score=95.05  Aligned_cols=181  Identities=13%  Similarity=0.133  Sum_probs=132.2

Q ss_pred             CCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec
Q 024868           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (261)
Q Consensus        52 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (261)
                      ..+..+.+.+|+..|..++--.+.+.+++++.|.++++|.++...........+.....|+.+|.++.|-.+-++++++ 
T Consensus       724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-  802 (1034)
T KOG4190|consen  724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-  802 (1034)
T ss_pred             ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-
Confidence            3455567889999999888777778899999999999999987654333333344555678899999999998888775 


Q ss_pred             cCCeEEEEEccCceEEeeccc--cCCceeEEEEcC--CCCEEEEe-cCCCcEEEEEccCCcEEEEEeec----CCCceEE
Q 024868          132 VDGHLRIMHWPSLRIILDEPK--AHKSVLDMDFSL--DSEFLATT-STDGSARIWKTEDGVAWTFLTRN----SDEKIEL  202 (261)
Q Consensus       132 ~d~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~--~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~  202 (261)
                       ||-|++||.--+..+..+..  .++.+..+..-|  +...+..+ +...+|+++|.+.++....++..    .++-+++
T Consensus       803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence             78899999766655433322  223333343334  34445444 67889999999988766665432    2235889


Q ss_pred             EEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       203 ~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      ++..|.|++     ++.+-.+|+|.+.|.++|+.+..
T Consensus       882 iaVa~~GN~-----lAa~LSnGci~~LDaR~G~vINs  913 (1034)
T KOG4190|consen  882 IAVADKGNK-----LAAALSNGCIAILDARNGKVINS  913 (1034)
T ss_pred             EEeccCcch-----hhHHhcCCcEEEEecCCCceecc
Confidence            999999999     57788889999999999987653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.28  E-value=1.2e-10  Score=86.50  Aligned_cols=168  Identities=13%  Similarity=0.216  Sum_probs=116.5

Q ss_pred             cCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEee-CCcEEEEeccCCeEE
Q 024868           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV-DGSRFAAGGVDGHLR  137 (261)
Q Consensus        60 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~d~~i~  137 (261)
                      ..|+--|.++.++.|+..++++ .|=.|.+|+++-......+..-....+. -..-|++..|+| ....++..+..|+|+
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            3577779999999999988886 5777999999765432322211100000 024578889999 457788888999999


Q ss_pred             EEEccCceEE------eecc----------ccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcEEEEEeecCCC--
Q 024868          138 IMHWPSLRII------LDEP----------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDE--  198 (261)
Q Consensus       138 ~~d~~~~~~~------~~~~----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~--  198 (261)
                      +.|++.....      ...+          +--..|..+.|+++|+++++-.. -+|++||+. ..+++.+++.|...  
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS  318 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence            9999843211      1111          01135788999999999998643 789999994 56777777654311  


Q ss_pred             ------------ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          199 ------------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       199 ------------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                                  .-..++|+.++.+     +++|+..+.+++|++..|
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~-----v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSY-----VMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcce-----EecccccceEEEecCCCC
Confidence                        1235789999888     799999999999996544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.27  E-value=1.5e-10  Score=87.46  Aligned_cols=156  Identities=17%  Similarity=0.235  Sum_probs=104.2

Q ss_pred             cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeC---
Q 024868           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG---   94 (261)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~---   94 (261)
                      ...++|++......      .++.|+....  ...........   ...+++.|..+......+...|.++-+|+-.   
T Consensus        73 ~~~llAv~~~~K~~------~~f~~~~~~~--~~kl~~~~~v~---~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   73 SGRLVAVATSSKQR------AVFDYRENPK--GAKLLDVSCVP---KRPTAISFIREDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             CceEEEEEeCCCce------EEEEEecCCC--cceeeeEeecc---cCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence            46788888766621      3555554433  11222222333   3344555555555555555555555555543   


Q ss_pred             CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc-ccCCceeEEEEcCCCCEEEEec
Q 024868           95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTS  173 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~  173 (261)
                      +..        ...+.|-..+..++|+||+++|+++..|..|++-.....-.+..+. +|..-|..++.-+ ++.|++++
T Consensus       142 ~~~--------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~s  212 (390)
T KOG3914|consen  142 GRC--------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGS  212 (390)
T ss_pred             cCc--------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecC
Confidence            332        5566777899999999999999999999999998776554444444 4666799998875 55699999


Q ss_pred             CCCcEEEEEccCCcEEEEEe
Q 024868          174 TDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~~  193 (261)
                      .|+++++||+.+|+++.++.
T Consensus       213 GD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCcEEEEecccCCcccccc
Confidence            99999999999999876553

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=7.8e-11  Score=91.09  Aligned_cols=192  Identities=13%  Similarity=0.098  Sum_probs=140.0

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccC
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD  133 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d  133 (261)
                      ...|..|.+.|..+.|+..|..|++++.|..+.+||..........      .-.|...|....|-|  +.+.+++++.|
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f------~SGH~~NvfQaKFiP~s~d~ti~~~s~d  208 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF------ESGHCNNVFQAKFIPFSGDRTIVTSSRD  208 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc------ccccccchhhhhccCCCCCcCceecccc
Confidence            3467889999999999999999999999999999999887652222      123345566667777  44678999999


Q ss_pred             CeEEEEEccCceE---EeeccccCCceeEEEEcCCC-CEEEEecCCCcEEEEEccCCcEEEEEeec---CC--CceEEEE
Q 024868          134 GHLRIMHWPSLRI---ILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRN---SD--EKIELCR  204 (261)
Q Consensus       134 ~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~--~~v~~~~  204 (261)
                      |.+++=.+...+.   ...+..|+++|..++.-|+. .-|.+++.|+.+.-+|++++.+...+...   ..  -....++
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            9999876643322   23455677899999999954 56889999999999999987765544321   11  1356788


Q ss_pred             EecCCCcceEEEEEeeCCCcEEEEEECCCCeE------Eeeee------ccCcCeeEEEEeeCCC
Q 024868          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------IGHKR------LLRKPASVLSISLDGK  257 (261)
Q Consensus       205 ~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~------~~~~~------~~~~~v~~~~~s~dg~  257 (261)
                      ..|.+.+.    ++.++.|..+++||.+.-..      +..+.      .....|++++++.++.
T Consensus       289 ~~P~nt~~----faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s  349 (559)
T KOG1334|consen  289 VDPRNTNE----FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS  349 (559)
T ss_pred             cCCCCccc----cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence            89988864    48889999999999875322      11111      2235689999997654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.21  E-value=5.9e-11  Score=104.55  Aligned_cols=184  Identities=9%  Similarity=0.099  Sum_probs=132.6

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~   98 (261)
                      ..+.++|+++|..      ++|.|.......      .....+. ..|+.+.|+.+|+.+..+..||.+.+|....... 
T Consensus      2220 ~~~Yltgs~dgsv------~~~~w~~~~~v~------~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~- 2285 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSV------RMFEWGHGQQVV------CFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY- 2285 (2439)
T ss_pred             CceEEecCCCceE------EEEeccCCCeEE------EeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcce-
Confidence            4467788888844      777776544332      2233333 7899999999999999999999999999873321 


Q ss_pred             cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec---cCCeEEEEEccCceE-EeeccccCCceeEEEEcCCCCEEEEecC
Q 024868           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFSLDSEFLATTST  174 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~  174 (261)
                             .....|.....++.|-.  ..+++++   .++.+.+||..-... -.....|.+.++++++-|.-+.|++|+.
T Consensus      2286 -------~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2286 -------TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             -------eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence                   22333455666777754  5666664   567899999653221 1122567778999999999999999999


Q ss_pred             CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          175 DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       175 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      +|.|++||++..+.++.++.          +. ...+     +++++..|.++||++.....++++.
T Consensus      2357 ~G~v~l~D~rqrql~h~~~~----------~~-~~~~-----f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA----------LD-TREY-----FVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             cCcEEEeehHHHHHHHHhhh----------hh-hhhe-----eeccCcccceEEEEccccchhhcCc
Confidence            99999999998888776653          33 2333     5888999999999998876665443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.21  E-value=3.8e-10  Score=80.83  Aligned_cols=202  Identities=12%  Similarity=0.128  Sum_probs=121.6

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccc
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI   99 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~   99 (261)
                      ..++.+..++...+-+..+....++........++..  +..|+++-.+-+.+--++.++++..||.+.+++.+.-....
T Consensus        48 ~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~  125 (319)
T KOG4714|consen   48 YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALM  125 (319)
T ss_pred             heeecccchhheeeeccceEEEechhhcccCcCceee--eeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhh
Confidence            3555666666555555556666665544433334333  33455443344444456779999999999999987632111


Q ss_pred             ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-----cCCeEEEEEccCceEEeeccccCCceeEEEEcCC-CCEEEEec
Q 024868          100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD-SEFLATTS  173 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~  173 (261)
                      ..    +.. .+ ..-.+.+.-..++.+.++.     .-+..+.|+++..+...........|.+++-+|. .+.+++|+
T Consensus       126 ~~----i~~-~~-~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt  199 (319)
T KOG4714|consen  126 SR----IPS-IH-SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGT  199 (319)
T ss_pred             hh----ccc-cc-ccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEec
Confidence            10    000 01 1112222333455555442     2234667777655443222223345899999995 45667888


Q ss_pred             CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      .||.+-+||.++......+...+..+++.+-|+|.....    ++++++||.+..||..+
T Consensus       200 ~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~----Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  200 DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH----LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh----eeEecCCCcEEEEcCCC
Confidence            999999999998754444433344579999999976543    68999999999999874

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=1.2e-08  Score=88.98  Aligned_cols=139  Identities=14%  Similarity=0.185  Sum_probs=88.4

Q ss_pred             CCCceEEEECCCCCeEEEEec---C---CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---C
Q 024868           63 EGDPMTIAVNPSGDDFVCSTT---N---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---D  133 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~---d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d  133 (261)
                      .+.-..++|..||+++|+.+-   .   ..++||+-+..-.   ..   ..  .-.+--..++|.|.|++||+...   .
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~---st---SE--~v~gLe~~l~WrPsG~lIA~~q~~~~~  280 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQ---ST---SE--PVDGLEGALSWRPSGNLIASSQRLPDR  280 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEE---ec---cc--cCCCccCCccCCCCCCEEEEEEEcCCC
Confidence            335567999999999998764   2   4688887763211   00   11  11223356899999999998863   3


Q ss_pred             CeEEEEEccCceEEeec--c--ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEec
Q 024868          134 GHLRIMHWPSLRIILDE--P--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSK  207 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~--~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p  207 (261)
                      ..|.+|. ++|-.-..+  .  .....|..+.|++|+..||....|. |++|-..+..-  .+.+.......+..+.|+|
T Consensus       281 ~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  281 HDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP  358 (928)
T ss_pred             cEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence            4566666 344322221  1  2334799999999999999977655 99999877542  2233322232355588998


Q ss_pred             CCCc
Q 024868          208 DGTK  211 (261)
Q Consensus       208 ~~~~  211 (261)
                      ....
T Consensus       359 e~p~  362 (928)
T PF04762_consen  359 EKPL  362 (928)
T ss_pred             CCCC
Confidence            7654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.20  E-value=2e-09  Score=85.85  Aligned_cols=187  Identities=19%  Similarity=0.179  Sum_probs=117.0

Q ss_pred             eecCCCCCceEEEECCCCCeEEEEec---C-CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-c
Q 024868           58 VFDESEGDPMTIAVNPSGDDFVCSTT---N-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-V  132 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~  132 (261)
                      .+......+..-+|+|+++.++....   . ..++++++..+.....        ....+.-...+|+|||++|+... .
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--------~~~~g~~~~P~fspDG~~l~f~~~r  258 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--------LNFNGNNGAPAFSPDGSKLAFSSSR  258 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--------eccCCccCCccCCCCCCEEEEEECC
Confidence            44444566788899999998775532   2 3588899988765221        12234445678999999887764 4


Q ss_pred             CC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCCcEEEEEeecCCCceEEEEEec
Q 024868          133 DG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (261)
Q Consensus       133 d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p  207 (261)
                      ||  .|+++|+..+.. .++....+.-..-.|+|||++++..++ .|  .|.+.|.+.+.. ..+...... -....|+|
T Consensus       259 dg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~~~p~~Sp  335 (425)
T COG0823         259 DGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-NSNPVWSP  335 (425)
T ss_pred             CCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-CcCccCCC
Confidence            55  477778776663 334444444458889999999887664 34  466667665555 344333332 23778999


Q ss_pred             CCCcceEEEEEeeCCCc--EEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          208 DGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       208 ~~~~~~~~~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ||+++.    +....+|  .|.++|+.++..+. ............|.|+|+.+.
T Consensus       336 dG~~i~----~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         336 DGDKIV----FESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRMIM  385 (425)
T ss_pred             CCCEEE----EEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCceEE
Confidence            999842    2222234  37777777666432 222333445677788887664

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=2.4e-08  Score=87.26  Aligned_cols=227  Identities=11%  Similarity=0.142  Sum_probs=135.9

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEE----cCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSF----DPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (261)
                      ...|.++.+.++   ...++++-.+|        .|..+    ++....+       .....-...|.+++||||+..|+
T Consensus        75 ~~~ivs~~yl~d---~~~l~~~~~~G--------di~~~~~~~~~~~~~~-------E~VG~vd~GI~a~~WSPD~Ella  136 (928)
T PF04762_consen   75 NDKIVSFQYLAD---SESLCIALASG--------DIILVREDPDPDEDEI-------EIVGSVDSGILAASWSPDEELLA  136 (928)
T ss_pred             CCcEEEEEeccC---CCcEEEEECCc--------eEEEEEccCCCCCcee-------EEEEEEcCcEEEEEECCCcCEEE
Confidence            467778888775   33445555555        66666    4444432       22333457899999999999999


Q ss_pred             EEecCCcEEEEEEeCC----c-------------------cccce------------eeeeC-----CCCCCCCCeEEEE
Q 024868           80 CSTTNGGCKLFEVYGG----A-------------------TDINL------------LAKKM-----PPLQDAGPQKCLS  119 (261)
Q Consensus        80 ~~~~dg~i~i~~~~~~----~-------------------~~~~~------------~~~~~-----~~~~~~~~v~~~~  119 (261)
                      ..+.++++.+.+..=.    .                   ...++            .....     ..+.....-..++
T Consensus       137 ~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~IS  216 (928)
T PF04762_consen  137 LVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRIS  216 (928)
T ss_pred             EEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEE
Confidence            9988888877643200    0                   00000            00000     0111223446789


Q ss_pred             EeeCCcEEEEecc------CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC---CCcEEEEEccCCcEEE
Q 024868          120 FSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWT  190 (261)
Q Consensus       120 ~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~~~  190 (261)
                      |-.||+++|+.+.      -+.+++|+ +.|.....-..-.+--..++|-|.|++||+.-.   ...|.+|. ++|..-.
T Consensus       217 WRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhg  294 (928)
T PF04762_consen  217 WRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHG  294 (928)
T ss_pred             ECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEee
Confidence            9999999998763      25799998 446543322222233467999999999998754   23466665 4454444


Q ss_pred             EEee---cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE--Eeeeec-cCcCeeEEEEeeCC
Q 024868          191 FLTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRL-LRKPASVLSISLDG  256 (261)
Q Consensus       191 ~~~~---~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~--~~~~~~-~~~~v~~~~~s~dg  256 (261)
                      .+..   .....|..+.|++|+..+     +..-.| .|.+|-..+..-  .+.+.. ....+..+.|+|..
T Consensus       295 eF~l~~~~~~~~v~~l~Wn~ds~iL-----Av~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~  360 (928)
T PF04762_consen  295 EFTLRFDPEEEKVIELAWNSDSEIL-----AVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK  360 (928)
T ss_pred             eEecCCCCCCceeeEEEECCCCCEE-----EEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence            4432   234469999999999973     333344 399999887552  112221 12334458888854

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=2e-10  Score=85.34  Aligned_cols=161  Identities=9%  Similarity=0.074  Sum_probs=116.8

Q ss_pred             EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc----eEEeeccccCC
Q 024868           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILDEPKAHK  155 (261)
Q Consensus        80 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~  155 (261)
                      +.+.+..+-+-+++++.         ...+...+.|.++.|...+.++..|...|.|..+|++.+    .......-|.+
T Consensus       229 s~G~sqqv~L~nvetg~---------~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~S  299 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVETGH---------QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDS  299 (425)
T ss_pred             cccccceeEEEEeeccc---------ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCc
Confidence            34455568888888776         344455678999999988899999999999999999865    22223344667


Q ss_pred             ceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcE---EEEEeecCCCce-EEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868          156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKI-ELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       156 ~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v-~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      .|+++..-. ++++|++.+.+|.|++||++.-++   +.++.+|.+... .-+-..+....     ++++++|...++|.
T Consensus       300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~-----I~s~GdDcytRiWs  374 (425)
T KOG2695|consen  300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGS-----IFSVGDDCYTRIWS  374 (425)
T ss_pred             chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccce-----EEEccCeeEEEEEe
Confidence            888887766 788999999999999999997666   777877754311 11223444554     57799999999999


Q ss_pred             CCCCeEEeeeeccC----cCeeEEEEee
Q 024868          231 ISTWNKIGHKRLLR----KPASVLSISL  254 (261)
Q Consensus       231 ~~~~~~~~~~~~~~----~~v~~~~~s~  254 (261)
                      ++.+..+.++....    ..+.+++|+.
T Consensus       375 l~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  375 LDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             cccCceeeccCCCCccccccccceehhc
Confidence            99999887665432    2445566543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=7.7e-10  Score=87.17  Aligned_cols=136  Identities=20%  Similarity=0.216  Sum_probs=102.4

Q ss_pred             EEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-----------CCcEEEEEcc
Q 024868          116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-----------DGSARIWKTE  184 (261)
Q Consensus       116 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d~~i~iwd~~  184 (261)
                      +-+.|||.|.+|++-...| |.+|--.+-..++++  .|..|.-+.|||+.+||++=+.           ...+.|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            5689999999999986666 889976555554443  2456899999999999998543           1479999999


Q ss_pred             CCcEEEEEeecC--CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          185 DGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       185 ~~~~~~~~~~~~--~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +|...+.+....  ...-.-+.||.|+++     ++.-. ...|.||+..+..++.........|....|+|.++.||
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy-----~Arm~-~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKY-----FARMT-GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCce-----eEEec-cceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence            999988886522  111234689999998     23222 25799999988777655555667899999999999887

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=2.1e-08  Score=82.38  Aligned_cols=218  Identities=13%  Similarity=0.107  Sum_probs=148.8

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC------------
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG------------   75 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------   75 (261)
                      ..+.|+|.    .++|.|+..         .|...|....+.      ...+..|...|+.+.|.|..            
T Consensus        19 ~A~Dw~~~----GLiAygshs---------lV~VVDs~s~q~------iqsie~h~s~V~~VrWap~~~p~~llS~~~~~   79 (1062)
T KOG1912|consen   19 NAADWSPS----GLIAYGSHS---------LVSVVDSRSLQL------IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQ   79 (1062)
T ss_pred             cccccCcc----ceEEEecCc---------eEEEEehhhhhh------hhccccCccceeEEEeccCCCchhccCccccc
Confidence            34668774    488888653         467778776655      55677889999999998732            


Q ss_pred             CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEee---CC-cEEEEeccCCeEEEEEccCceEEeec
Q 024868           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDE  150 (261)
Q Consensus        76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~  150 (261)
                      -.||++...|.|.+||......        +..+. +..++..++|-|   +. ..+++-....++.+|+..+|+..++.
T Consensus        80 lliAsaD~~GrIil~d~~~~s~--------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~  151 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVLASV--------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY  151 (1062)
T ss_pred             eeEEeccccCcEEEEEehhhhh--------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence            1466777779999999987764        33333 346778888876   34 35666667789999999999998887


Q ss_pred             cccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccC-------CcEEEEEeecCC----------------Cc-------
Q 024868          151 PKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSD----------------EK-------  199 (261)
Q Consensus       151 ~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~----------------~~-------  199 (261)
                      .-.+....++.+.| |.+.+...+..|.+.+-+.-.       ++..+....|.+                .+       
T Consensus       152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit  231 (1062)
T KOG1912|consen  152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT  231 (1062)
T ss_pred             ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence            77777888899999 777777777778777766531       222222111111                00       


Q ss_pred             -eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC
Q 024868          200 -IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       200 -v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~  257 (261)
                       ...++|+|.-+.+     ........+.++|++-...+.......+.+.-+.|-|+++
T Consensus       232 y~a~faf~p~~rn~-----lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~  285 (1062)
T KOG1912|consen  232 YCAQFAFSPHWRNI-----LFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR  285 (1062)
T ss_pred             HHHhhhcChhhhce-----EEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence             1135678876663     2222356799999988777777776667667777777765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.12  E-value=3.3e-09  Score=78.11  Aligned_cols=223  Identities=14%  Similarity=0.173  Sum_probs=135.5

Q ss_pred             CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC------------CCceEE
Q 024868            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTI   69 (261)
Q Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~   69 (261)
                      +....|+++.|...   +.++++|...|        ++..|...... ..+...-..+++|.            ..|..+
T Consensus        24 tead~ItaVefd~t---g~YlatGDkgG--------RVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I   91 (460)
T COG5170          24 TEADKITAVEFDET---GLYLATGDKGG--------RVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAI   91 (460)
T ss_pred             cccceeeEEEeccc---cceEeecCCCc--------eEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhhe
Confidence            34567888888763   67999998888        77777654433 11111111234443            247888


Q ss_pred             EECCCCC--eEEEEecCCcEEEEEEeCCcccc----------------------ceee--------------eeCCCCCC
Q 024868           70 AVNPSGD--DFVCSTTNGGCKLFEVYGGATDI----------------------NLLA--------------KKMPPLQD  111 (261)
Q Consensus        70 ~~~~~~~--~l~~~~~dg~i~i~~~~~~~~~~----------------------~~~~--------------~~~~~~~~  111 (261)
                      .|..++.  .++..+.|.+|++|.+.......                      .+..              .....-.|
T Consensus        92 ~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH  171 (460)
T COG5170          92 EWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH  171 (460)
T ss_pred             eeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc
Confidence            8876543  35555689999999997652100                      0000              00011123


Q ss_pred             CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE---EeeccccC-----CceeEEEEcCC-CCEEEEecCCCcEEEEE
Q 024868          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSLD-SEFLATTSTDGSARIWK  182 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~-----~~v~~~~~s~~-~~~l~~~~~d~~i~iwd  182 (261)
                      .--+.++.|+.|...++++ .|=.|.+|.+.-...   +..+..+.     .-|++..|+|. ...+...+..|.|++-|
T Consensus       172 ~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D  250 (460)
T COG5170         172 PYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND  250 (460)
T ss_pred             eeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence            3456788999988888887 677899998764322   22333333     24788999994 45566667789999999


Q ss_pred             ccCCcE------EEEEee---------cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeeeecc
Q 024868          183 TEDGVA------WTFLTR---------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLL  243 (261)
Q Consensus       183 ~~~~~~------~~~~~~---------~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~  243 (261)
                      +++...      +.....         ..-..|..+.|+++|++     +++.. --++++||.+..+ ++.++..|
T Consensus       251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry-----IlsRd-yltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY-----ILSRD-YLTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE-----EEEec-cceEEEEecccccCCceeechH
Confidence            984321      111110         01124788999999998     34444 4589999998644 45555433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.10  E-value=1.4e-07  Score=69.01  Aligned_cols=172  Identities=12%  Similarity=0.109  Sum_probs=108.7

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC------CcEEEEeccCCeEE
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD------GSRFAAGGVDGHLR  137 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~d~~i~  137 (261)
                      ..=..++||||+..||.+...|+|++||+.+.... .+.........-...|..+.|-+-      ...|++-..+|.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            34678999999999999999999999999865431 111111111112356777777542      22455666788877


Q ss_pred             EEEccCc--e---E--Eeecccc-CCceeEEEEcCCCCEEEEecCC-C----------cEEEEEccCCcEE---------
Q 024868          138 IMHWPSL--R---I--ILDEPKA-HKSVLDMDFSLDSEFLATTSTD-G----------SARIWKTEDGVAW---------  189 (261)
Q Consensus       138 ~~d~~~~--~---~--~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-~----------~i~iwd~~~~~~~---------  189 (261)
                      -|-+..+  +   .  ...+..+ ...|.++.++|..++|+.|+.. .          -+.-|.+-++.+-         
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~  202 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED  202 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence            7765322  1   1  1222223 2479999999998888776541 1          2556655332110         


Q ss_pred             ------------E-----EE--eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          190 ------------T-----FL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       190 ------------~-----~~--~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                                  +     .+  .......|..|..||||+.     +++...+|.|.+|++.+-+......
T Consensus       203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~-----La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSL-----LACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cccccccccceeeccceeeeeccccCCCceEEEEECCCCCE-----EEEEEcCCeEEEEecCcchhhcccc
Confidence                        0     00  1112335889999999998     6888899999999998876654443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.08  E-value=7.9e-08  Score=75.32  Aligned_cols=152  Identities=11%  Similarity=0.135  Sum_probs=102.7

Q ss_pred             eEEEECCCCCeEEEEec-----------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cC
Q 024868           67 MTIAVNPSGDDFVCSTT-----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VD  133 (261)
Q Consensus        67 ~~~~~~~~~~~l~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d  133 (261)
                      ..+.|++.|++|.+-..           ..+++++++.......        ...-.++|...+|+|+++.+++.+  .+
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--------~~~~~~pVhdf~W~p~S~~F~vi~g~~p  297 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--------EKDLKDPVHDFTWEPLSSRFAVISGYMP  297 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce--------eccccccceeeeecccCCceeEEecccc
Confidence            36889999987764211           2468888887554311        113368999999999988776654  67


Q ss_pred             CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEE-EEeecCCCceEEEEEecCC
Q 024868          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDG  209 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~  209 (261)
                      -.+.++|++.. .....  ....=..+.|+|.+++++.++-|   |.+-+||......+. .+.+.   ..+-+.|+||+
T Consensus       298 a~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~  371 (561)
T COG5354         298 ASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDG  371 (561)
T ss_pred             cceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCc
Confidence            78999998755 33322  33344567899999999987765   689999987654443 44322   25667899999


Q ss_pred             CcceEEEEEee---CCCcEEEEEECCCC
Q 024868          210 TKPFLFCTVQR---GDKALLAVYDISTW  234 (261)
Q Consensus       210 ~~~~~~~~~~~---~~d~~i~~~d~~~~  234 (261)
                      +++.+  ..++   ..|..+.|||+...
T Consensus       372 qF~~~--~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         372 QFYDT--DTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             eEEEe--cCCCcccccCcceEEEEecCc
Confidence            97321  2222   24788999998643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.07  E-value=7.6e-08  Score=76.93  Aligned_cols=159  Identities=11%  Similarity=0.011  Sum_probs=95.7

Q ss_pred             CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      ..++.+..++.+..+|..+++.....................+.-+|  .+..+++++.+|.++.+|..+++.+..... 
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-  269 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-  269 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-
Confidence            35677777888999998877643221100000000000000010111  245677777899999999999987765542 


Q ss_pred             CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                       .....+.  .++..++.++.+|.++.+|..+|+.+............+...  .+..     ++.++.+|.++++|..+
T Consensus       270 -~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~-----l~~~~~~G~l~~~d~~t  339 (377)
T TIGR03300       270 -SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGY-----LVVGDFEGYLHWLSRED  339 (377)
T ss_pred             -CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCE-----EEEEeCCCEEEEEECCC
Confidence             1111222  246678888889999999999998876553211211222222  3444     46778899999999999


Q ss_pred             CeEEeeeeccCc
Q 024868          234 WNKIGHKRLLRK  245 (261)
Q Consensus       234 ~~~~~~~~~~~~  245 (261)
                      ++.+.....+..
T Consensus       340 G~~~~~~~~~~~  351 (377)
T TIGR03300       340 GSFVARLKTDGS  351 (377)
T ss_pred             CCEEEEEEcCCC
Confidence            998877665543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.06  E-value=2.9e-08  Score=79.40  Aligned_cols=182  Identities=16%  Similarity=0.195  Sum_probs=106.3

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCC-CCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSS-RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-   82 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-   82 (261)
                      .++..-+|+|+.....++..-... .        +++.++.+++..      ...+. ..+.-...+|+|||++|+... 
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~--------~i~~~~l~~g~~------~~i~~-~~g~~~~P~fspDG~~l~f~~~  257 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCP--------RIYYLDLNTGKR------PVILN-FNGNNGAPAFSPDGSKLAFSSS  257 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCc--------eEEEEeccCCcc------ceeec-cCCccCCccCCCCCCEEEEEEC
Confidence            445555677765433333332222 2        677777766553      11111 234455688999999887554 


Q ss_pred             cCCc--EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCce
Q 024868           83 TNGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKSV  157 (261)
Q Consensus        83 ~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v  157 (261)
                      .||.  |+++|+.++.. .+       .....+.-..-.|+|||++|+..+. .|  .|.+++.+.....+........ 
T Consensus       258 rdg~~~iy~~dl~~~~~-~~-------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-  328 (425)
T COG0823         258 RDGSPDIYLMDLDGKNL-PR-------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-  328 (425)
T ss_pred             CCCCccEEEEcCCCCcc-ee-------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-
Confidence            4554  55666666552 11       1111222346789999999888753 33  4777777666553333322222 


Q ss_pred             eEEEEcCCCCEEEEecCC-Cc--EEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868          158 LDMDFSLDSEFLATTSTD-GS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      ....|+|||++++..+.. |.  |.+.|+.++...+.+....  ......|.|+|+.+
T Consensus       329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~~ng~~i  384 (425)
T COG0823         329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY--LNESPSWAPNGRMI  384 (425)
T ss_pred             cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc--cCCCCCcCCCCceE
Confidence            378899999999877643 44  6667776665444444222  24567789999973

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=9.9e-09  Score=84.39  Aligned_cols=179  Identities=12%  Similarity=0.219  Sum_probs=123.6

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      ++|++++.     ..++.|..+|        .++.++.....-        ....|+..      ..+|.++++|+.||+
T Consensus        42 is~~av~~-----~~~~~GtH~g--------~v~~~~~~~~~~--------~~~~~s~~------~~~Gey~asCS~DGk   94 (846)
T KOG2066|consen   42 ISCCAVHD-----KFFALGTHRG--------AVYLTTCQGNPK--------TNFDHSSS------ILEGEYVASCSDDGK   94 (846)
T ss_pred             HHHHHhhc-----ceeeeccccc--------eEEEEecCCccc--------cccccccc------ccCCceEEEecCCCc
Confidence            34455543     3788888888        777776654320        11223222      568999999999999


Q ss_pred             EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-----CcEEEEeccCCeEEEEEcc---CceEEeeccccCCcee
Q 024868           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-----GSRFAAGGVDGHLRIMHWP---SLRIILDEPKAHKSVL  158 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~v~  158 (261)
                      +.|-.+.+.+.        .....-+.++.+++++|+     .+.+++|+..| +.++.-+   .... .......++|.
T Consensus        95 v~I~sl~~~~~--------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-v~l~~~eG~I~  164 (846)
T KOG2066|consen   95 VVIGSLFTDDE--------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-VVLSEGEGPIH  164 (846)
T ss_pred             EEEeeccCCcc--------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-eeeecCccceE
Confidence            99999988764        333444678999999998     56899998888 7776532   1122 13345567899


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC-----ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-----KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      ++.|.  |+++|-++++| |++||..+++.+..++.....     -...+.|.++.+.      +. |...+|++..++
T Consensus       165 ~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L------VI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  165 SIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL------VI-GWGDSVKICSIK  233 (846)
T ss_pred             EEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE------EE-ecCCeEEEEEEe
Confidence            99996  88999988766 899999999888777654432     1335788887774      22 333468888877

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.05  E-value=1.2e-06  Score=65.95  Aligned_cols=212  Identities=16%  Similarity=0.122  Sum_probs=128.8

Q ss_pred             cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC--ceEEEECCCCCeEEEEec-----CCcEEEE
Q 024868           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD--PMTIAVNPSGDDFVCSTT-----NGGCKLF   90 (261)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~i~   90 (261)
                      ....++++..-|.       ....||..++..      ...+....+.  .-.-.|++||++|++.-.     .|.|-||
T Consensus        16 ~~~avafaRRPG~-------~~~v~D~~~g~~------~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen   16 RPEAVAFARRPGT-------FALVFDCRTGQL------LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             CCeEEEEEeCCCc-------EEEEEEcCCCce------eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            3556667655441       577888887764      2222222221  124679999999998754     3889999


Q ss_pred             EEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc------------------CCeEEEEEccCceEEeecc-
Q 024868           91 EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------------------DGHLRIMHWPSLRIILDEP-  151 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~-  151 (261)
                      |....-.  +.    -....+.-....+.+.|||+.|+++..                  +..+.+.|..+++.+.+.. 
T Consensus        83 d~~~~~~--ri----~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   83 DAARGYR--RI----GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             ECcCCcE--EE----eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence            9983221  10    111112223356889999988777631                  1235566677777655422 


Q ss_pred             ---ccCCceeEEEEcCCCCEEEEecCCC-------cEEEEEccCCcEEEEEeec------CCCceEEEEEecCCCcceEE
Q 024868          152 ---KAHKSVLDMDFSLDSEFLATTSTDG-------SARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       152 ---~~~~~v~~~~~s~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~~~~~  215 (261)
                         .+.-.++.+++.++|..++..-..+       -+.+++  .++.+..+...      ....+-++++++++..+   
T Consensus       157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i---  231 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLI---  231 (305)
T ss_pred             CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEE---
Confidence               1334799999999987665543322       133443  33333333221      12358899999999873   


Q ss_pred             EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG  256 (261)
Q Consensus       216 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg  256 (261)
                       ++++-..+.+.+||..+++.+.....  ..++.++-.+++
T Consensus       232 -a~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~  269 (305)
T PF07433_consen  232 -AVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG  269 (305)
T ss_pred             -EEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc
Confidence             46777888999999999998754433  344556655555

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.05  E-value=2.2e-08  Score=72.33  Aligned_cols=180  Identities=11%  Similarity=0.038  Sum_probs=113.4

Q ss_pred             EEEECC-----CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868           68 TIAVNP-----SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (261)
Q Consensus        68 ~~~~~~-----~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~  142 (261)
                      .+.|.|     .-.+|+.|+..|.+.+|...+.+...++.........-...+...     ...+..++.|.++++.++.
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-----~~~~~i~sndht~k~~~~~  146 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-----KFPLNIASNDHTGKTMVVS  146 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-----ccceeeccCCcceeEEEEe
Confidence            455555     334788998999999999987664222221111111001111111     1235566788888888875


Q ss_pred             CceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC-CcEE-EEEeecCCCceEEEEEecCCCcceEEEEEee
Q 024868          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       143 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                      -+..........-.+.++..++|++++++.++...|..|.+.. ++.+ +.........-.+..|+.....     .+.+
T Consensus       147 ~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~-----FAv~  221 (344)
T KOG4532|consen  147 GDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ-----FAVV  221 (344)
T ss_pred             cCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce-----EEEE
Confidence            4432211111112378899999999999999999999998874 3322 2222222223457788888777     5889


Q ss_pred             CCCcEEEEEECCCCeEE-----eeeeccCcCeeEEEEeeCCC
Q 024868          221 GDKALLAVYDISTWNKI-----GHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s~dg~  257 (261)
                      ..||++.|||++.....     .+...|.+.+..+.|++-|.
T Consensus       222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            99999999999865432     23345778899999998553

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.05  E-value=2.3e-08  Score=78.21  Aligned_cols=185  Identities=16%  Similarity=0.171  Sum_probs=132.4

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--------
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------  133 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------  133 (261)
                      ..-++..+.|||.|.+|++....+ |.+|.-.......        .+. +..|..+.|||.+++|.+-...        
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~--------~~~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e  100 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV--------RFR-HPDVKYLDFSPNEKYLVTWSREPIIEPEIE  100 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhhee--------eee-cCCceecccCcccceeeeeccCCccChhhc
Confidence            455788999999999999877666 9999887665311        111 3568889999999999986432        


Q ss_pred             -------CeEEEEEccCceEEeeccccCCc--ee-EEEEcCCCCEEEEecCCCcEEEEEccCCcE----EEEEeecCCCc
Q 024868          134 -------GHLRIMHWPSLRIILDEPKAHKS--VL-DMDFSLDSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEK  199 (261)
Q Consensus       134 -------~~i~~~d~~~~~~~~~~~~~~~~--v~-~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~  199 (261)
                             ..+.+||+.++..+..+.....+  .+ -+.|+-+.+++|=. -...++|+++ ++..    .+.+.   ...
T Consensus       101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr---~~g  175 (561)
T COG5354         101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR---PVG  175 (561)
T ss_pred             cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc---ccc
Confidence                   34999999999988777655554  44 68899888877655 3467999997 3332    22222   224


Q ss_pred             eEEEEEecCCCcceEE--EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          200 IELCRFSKDGTKPFLF--CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       200 v~~~~~~p~~~~~~~~--~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +....|+|.+..--+.  +--..+.++++++|.+..+..+.+.......-..+.|.+.|++|.+
T Consensus       176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~  239 (561)
T COG5354         176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLV  239 (561)
T ss_pred             eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEE
Confidence            8899999986652211  1123567889999999988877666666656678999999998863

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.03  E-value=1e-09  Score=97.08  Aligned_cols=165  Identities=15%  Similarity=0.205  Sum_probs=124.8

Q ss_pred             ecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE
Q 024868           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (261)
Q Consensus        59 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~  138 (261)
                      ++.+-..|.++.=+|...+.++|+.||.+++|....+....-     .... +...|+.+.|+.+|..+..+..||.+.+
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~-----~rt~-g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC-----FRTA-GNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE-----eecc-CcchhhhhhhcccCCceeeeccCCceee
Confidence            334445677888888888999999999999999877664221     1112 2377889999999999999999999999


Q ss_pred             EEccCceEEeeccccCCceeEEEEcCCCCEEEEec---CCCcEEEEEccCC---cEEEEEeecCCCceEEEEEecCCCcc
Q 024868          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      |.+. .+.......|.....+.+|-.  ..+++++   +++.+.+||..-.   ..+.  ..|.. .++++++-|..+. 
T Consensus      2278 ~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~-gaT~l~~~P~~ql- 2350 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG-GATVLAYAPKHQL- 2350 (2439)
T ss_pred             cccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCC-CceEEEEcCcceE-
Confidence            9976 555556667777888888864  5667654   4688999997532   2333  44544 5999999999987 


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                          +++|+.+|.|++||++..+.++++
T Consensus      2351 ----lisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2351 ----LISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             ----EEecCCcCcEEEeehHHHHHHHHh
Confidence                799999999999999876655433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=2.3e-10  Score=94.96  Aligned_cols=209  Identities=14%  Similarity=0.159  Sum_probs=146.4

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .--+|++|+-+   .+.+++|...|        +|..|+..++..      ......|..+|+-+.-+.||..+++.+..
T Consensus      1102 ~~fTc~afs~~---~~hL~vG~~~G--------eik~~nv~sG~~------e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG---TNHLAVGSHAG--------EIKIFNVSSGSM------EESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             cceeeEEeecC---CceEEeeeccc--------eEEEEEccCccc------cccccccccccccccccCCcceeeeeccc
Confidence            34689999884   67899999999        888888877765      55678899999999999999987766543


Q ss_pred             C--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC----Ccee
Q 024868           85 G--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH----KSVL  158 (261)
Q Consensus        85 g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~v~  158 (261)
                      .  -..+|++......       ...   ...-.++.|+.....-+.|.......+||+.++.....+....    -.-.
T Consensus      1165 S~PlsaLW~~~s~~~~-------~Hs---f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGP-------RHS---FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred             cCchHHHhccccccCc-------ccc---ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence            2  4678998763321       111   2344678888765555566556678999999988765543322    1236


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  238 (261)
                      ...|+|+..+++   .||  .+||.+..+.++.+..-..  --.-.|+|.|..     ++..+     .|||+++.+.+.
T Consensus      1235 ~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~e-----VIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1235 LAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNE-----VIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred             ccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee--cccccccCCCce-----EEeec-----hhhhhHHHHHHh
Confidence            788999988776   355  5899998888877754332  223359999998     34433     499999988776


Q ss_pred             eeeccCcCeeEEEEeeCCCEE
Q 024868          239 HKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       239 ~~~~~~~~v~~~~~s~dg~~l  259 (261)
                      .....  .-+.+.|+..|..+
T Consensus      1298 ~VP~L--dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1298 SVPSL--DQCAVTFNSTGDVM 1316 (1516)
T ss_pred             cCccc--cceEEEeccCccch
Confidence            55433  23568888887754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.99  E-value=1.2e-08  Score=76.05  Aligned_cols=80  Identities=11%  Similarity=0.235  Sum_probs=66.0

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  135 (261)
                      ...+.+|.+.+.+++|.|....|.+|..|..+.+||+.......      .....|...|..+..-+..+.+.+++.||.
T Consensus       190 i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~------~el~gh~~kV~~l~~~~~t~~l~S~~edg~  263 (404)
T KOG1409|consen  190 ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA------YELQGHNDKVQALSYAQHTRQLISCGEDGG  263 (404)
T ss_pred             EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee------eeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence            45788999999999999999999999999999999998765311      223345667777777777888999999999


Q ss_pred             EEEEEc
Q 024868          136 LRIMHW  141 (261)
Q Consensus       136 i~~~d~  141 (261)
                      |.+|++
T Consensus       264 i~~w~m  269 (404)
T KOG1409|consen  264 IVVWNM  269 (404)
T ss_pred             EEEEec
Confidence            999998

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.98  E-value=2.6e-07  Score=67.58  Aligned_cols=176  Identities=15%  Similarity=0.158  Sum_probs=109.3

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC------CCeEEEE
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS------GDDFVCS   81 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~   81 (261)
                      ..++|+|+   ..++|.+.+.|        .|..||..+..+-.-+........-...|..+.|-+.      ...|++-
T Consensus        47 Rkl~WSpD---~tlLa~a~S~G--------~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi  115 (282)
T PF15492_consen   47 RKLAWSPD---CTLLAYAESTG--------TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI  115 (282)
T ss_pred             eEEEECCC---CcEEEEEcCCC--------eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEE
Confidence            46789985   67999999999        8999998766542211111111122356777777542      2246666


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEecc----CC-------eEEEEEccCceE---
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGV----DG-------HLRIMHWPSLRI---  146 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----d~-------~i~~~d~~~~~~---  146 (261)
                      ..+|.++-|-+..+....-.......... ....|.++.++|.-++|++|+.    ++       -+.-|.+-++.+   
T Consensus       116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk  195 (282)
T PF15492_consen  116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK  195 (282)
T ss_pred             eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE
Confidence            78888888887543211111111111111 2467999999999888888762    11       145565422110   


Q ss_pred             -----------------Eeecc---------ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee
Q 024868          147 -----------------ILDEP---------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR  194 (261)
Q Consensus       147 -----------------~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  194 (261)
                                       ..++.         .....|..|..||||+.||+...+|.|.+|++.+-++...+..
T Consensus       196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence                             00111         1234699999999999999999999999999988776666543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=3.2e-09  Score=79.11  Aligned_cols=131  Identities=11%  Similarity=0.147  Sum_probs=99.7

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEE
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMH  140 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d  140 (261)
                      ....|.++.|...++.+..|..+|.|..+|++.......   .....+-|...|+++..-. ++.+|.+.+.+|+|.+||
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~---~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD  327 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG---WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD  327 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC---cceEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence            456799999999899999999999999999987632111   1123344667888887766 678888888999999999


Q ss_pred             ccCceE---EeeccccCCc--eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec
Q 024868          141 WPSLRI---ILDEPKAHKS--VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN  195 (261)
Q Consensus       141 ~~~~~~---~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  195 (261)
                      .+--+.   +....+|-..  -.-+-..+....++++++|...+||.++.|..+.+++..
T Consensus       328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            986655   6666665542  223345677778899999999999999999998887644

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.94  E-value=1.8e-07  Score=69.96  Aligned_cols=202  Identities=10%  Similarity=0.140  Sum_probs=130.6

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .|++++++.+.   ...+++|-..|        .+..|.....- . .-........|...+..+-|+...+++++.+.|
T Consensus        69 ~~~~~~~y~~e---~~~L~vg~~ng--------tvtefs~sedf-n-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d  135 (404)
T KOG1409|consen   69 SPCSAMEYVSE---SRRLYVGQDNG--------TVTEFALSEDF-N-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD  135 (404)
T ss_pred             CCceEeeeecc---ceEEEEEEecc--------eEEEEEhhhhh-h-hcchhhhhhhhhcceeeEEecCCceeEEEeccc
Confidence            35566666663   45666776666        66666543210 0 001133456789999999999988999998888


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc--cCceEEeeccccCCceeEEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW--PSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      ..+.---.+.+.....        ..-.....++.+.-.  +...|...|.+.+..+  ..-..+..+.+|.+.+.+++|
T Consensus       136 k~~~~hc~e~~~~lg~--------Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W  205 (404)
T KOG1409|consen  136 KQFAWHCTESGNRLGG--------YNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW  205 (404)
T ss_pred             cceEEEeeccCCcccc--------eEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE
Confidence            7554333343332110        000111122222222  4555666666655544  344556677788889999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEE-EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      .|..+.|.++..|..+.+||+--++-+ ..+.+|.. .|..+...+--+.     +.+++.||.|.+||++...
T Consensus       206 d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~~~t~~-----l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  206 DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND-KVQALSYAQHTRQ-----LISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             cCCCcEEEeccccCceEEEeccCCcceeeeeccchh-hhhhhhhhhhhee-----eeeccCCCeEEEEecccee
Confidence            999999999999999999999754433 34455544 5888877777776     6899999999999997543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.92  E-value=1.6e-08  Score=74.66  Aligned_cols=194  Identities=13%  Similarity=0.158  Sum_probs=122.4

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCc-cccceeee---------eCCCCCCCCCeEEEEEeeCC--cEEEEe
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAK---------KMPPLQDAGPQKCLSFSVDG--SRFAAG  130 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~---------~~~~~~~~~~v~~~~~s~~~--~~l~~~  130 (261)
                      .+.|+++.|...|.+|++|...|.|.+|.-.... +..+.+..         ....+.-...|..+.|-.++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4578999999999999999999999999765432 22222111         11112223567888887654  245555


Q ss_pred             ccCCeEEEEEccCce-------------------EE------------------e----e-c-cccCCceeEEEEcCCCC
Q 024868          131 GVDGHLRIMHWPSLR-------------------II------------------L----D-E-PKAHKSVLDMDFSLDSE  167 (261)
Q Consensus       131 ~~d~~i~~~d~~~~~-------------------~~------------------~----~-~-~~~~~~v~~~~~s~~~~  167 (261)
                      +.|.+|++|.+....                   ++                  .    + . ..|.-.+.+++|+.|.+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            689999999874320                   00                  0    0 0 11223477899988888


Q ss_pred             EEEEecCCCcEEEEEccCCcE---EEEEeecC----CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE----
Q 024868          168 FLATTSTDGSARIWKTEDGVA---WTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----  236 (261)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~----~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~----  236 (261)
                      .++++ +|-.|.+|++.-...   +..++.+.    ...|++..|+|....+|    .-++..|.|++-|++....    
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f----mYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF----MYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE----EEecCCCcEEehhhhhhhhccCc
Confidence            77766 578899999874322   12222222    12478899999877643    3345678999999984221    


Q ss_pred             --Eee----------eeccCcCeeEEEEeeCCCEEeC
Q 024868          237 --IGH----------KRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       237 --~~~----------~~~~~~~v~~~~~s~dg~~la~  261 (261)
                        +..          +......|+++.|+++|+|++.
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls  297 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS  297 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence              111          1111257889999999999873

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.92  E-value=1.2e-08  Score=83.41  Aligned_cols=222  Identities=11%  Similarity=0.102  Sum_probs=141.2

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC-CeEEEEecCC
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNG   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg   85 (261)
                      |-.+.|+|.+.....++..+...         ...|+....   .....+..+.+|+..|+.+.|+|.. ..+++++.|.
T Consensus        70 vad~qws~h~a~~~wiVsts~qk---------aiiwnlA~s---s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt  137 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQK---------AIIWNLAKS---SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT  137 (1081)
T ss_pred             hcceecccCCCCceeEEecCcch---------hhhhhhhcC---CccceEEEEecCccceeccccCCCCCcceeeccccc
Confidence            44567888876555566554332         233443221   1223467889999999999999854 5678999999


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEEEcC
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~  164 (261)
                      .+..||+++.......      ...-+..-..++|+-..-.+++.+..+.+++||.+.+.. +....++-..+..++|..
T Consensus       138 ~vh~wd~rSp~~p~ys------~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr  211 (1081)
T KOG0309|consen  138 YVHAWDMRSPHRPFYS------TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR  211 (1081)
T ss_pred             cceeeeccCCCcceee------eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence            9999999887642221      112245567789987443444445777899999987764 344555556788888865


Q ss_pred             -CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC----------
Q 024868          165 -DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST----------  233 (261)
Q Consensus       165 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~----------  233 (261)
                       -...+.+.+.|++|+.||................+++..++.|-|+-.++  ....+ +..+.+++.+.          
T Consensus       212 ~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~--mp~~G-~n~v~~~~c~n~d~e~n~~~~  288 (1081)
T KOG0309|consen  212 FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI--MPMVG-GNMVPQLRCENSDLEWNVFDL  288 (1081)
T ss_pred             hhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe--ccccC-CeeeeeccccchhhhhccccC
Confidence             33467888899999999987543322222334567888889998876322  11222 22555555432          


Q ss_pred             CeEEeeeeccCcCeeE
Q 024868          234 WNKIGHKRLLRKPASV  249 (261)
Q Consensus       234 ~~~~~~~~~~~~~v~~  249 (261)
                      .+++..+.+|...|..
T Consensus       289 ~~pVh~F~GH~D~V~e  304 (1081)
T KOG0309|consen  289 NTPVHTFVGHDDVVLE  304 (1081)
T ss_pred             CcceeeecCcchHHHH
Confidence            2456667777654433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.90  E-value=8.1e-06  Score=60.52  Aligned_cols=201  Identities=12%  Similarity=0.100  Sum_probs=113.9

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      .+..++|+|+.  ..++++....+        .|+.++.++..     +....+.+ .+....+++..++.++++.-.++
T Consensus        23 e~SGLTy~pd~--~tLfaV~d~~~--------~i~els~~G~v-----lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~   86 (248)
T PF06977_consen   23 ELSGLTYNPDT--GTLFAVQDEPG--------EIYELSLDGKV-----LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQ   86 (248)
T ss_dssp             -EEEEEEETTT--TEEEEEETTTT--------EEEEEETT--E-----EEEEE-SS--SSEEEEEE-STTEEEEEETTTT
T ss_pred             CccccEEcCCC--CeEEEEECCCC--------EEEEEcCCCCE-----EEEEeCCC-CCCceeEEEECCCEEEEEEcCCC
Confidence            48889999863  67888888888        89999986433     23444554 35788999988887776655589


Q ss_pred             cEEEEEEeCCcccccee--eee-CCC-CCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC---ceEE--eec---c--
Q 024868           86 GCKLFEVYGGATDINLL--AKK-MPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LRII--LDE---P--  151 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~--~~~-~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~---~~~~--~~~---~--  151 (261)
                      .+.++++..........  ... ... ..+...+..++|+|.++.|+++-......+|.++.   ....  ...   .  
T Consensus        87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~  166 (248)
T PF06977_consen   87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD  166 (248)
T ss_dssp             EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred             cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence            99999995543211111  111 111 12345689999999877777776666666666643   1111  111   1  


Q ss_pred             -ccCCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCC--------CceEEEEEecCCCcceEEEEEeeC
Q 024868          152 -KAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       152 -~~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                       .....+.++.++|. +++++.+..+..+.++| .+|+++..+.-..+        .....++|.++|+.      ...+
T Consensus       167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L------YIvs  239 (248)
T PF06977_consen  167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL------YIVS  239 (248)
T ss_dssp             T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E------EEEE
T ss_pred             cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE------EEEc
Confidence             11235788999995 56667777788899999 67887776653321        13778999999985      4444


Q ss_pred             CCcEEEEE
Q 024868          222 DKALLAVY  229 (261)
Q Consensus       222 ~d~~i~~~  229 (261)
                      +.+..++|
T Consensus       240 EpNlfy~f  247 (248)
T PF06977_consen  240 EPNLFYRF  247 (248)
T ss_dssp             TTTEEEEE
T ss_pred             CCceEEEe
Confidence            56666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=1.8e-08  Score=82.21  Aligned_cols=162  Identities=12%  Similarity=0.161  Sum_probs=119.8

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccccee--------eeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL--------AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  135 (261)
                      ....+++|+.+..++++|+.||.+++..+.+.....+..        .-.+..-.|...|.-+.|+.+.+.|-+...+|-
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            457899999999999999999999999987654322111        111223345688999999999999999999999


Q ss_pred             EEEEEccCceEEeeccc--cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE-EEEeecCCCceEEEEEecCCCcc
Q 024868          136 LRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      |.+|-+-.+.-...+..  ..+-|.+++|+.||..++..-.||.|.+=.+...+.- +.+++.   ....+.|++|.+. 
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~hv~ws~D~~~-  170 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLAHVLWSEDLEQ-  170 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---eccceeecccHHH-
Confidence            99999877764433332  2346899999999999999999998888776533221 122221   2557889999998 


Q ss_pred             eEEEEEeeCCCcEEEEEECCC
Q 024868          213 FLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~  233 (261)
                          +..+-.+|.+.+||...
T Consensus       171 ----~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  171 ----ALFKKANGETHLYDNQG  187 (1189)
T ss_pred             ----HHhhhcCCcEEEecccc
Confidence                45666778999999763

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.89  E-value=8.7e-09  Score=53.34  Aligned_cols=38  Identities=29%  Similarity=0.546  Sum_probs=34.5

Q ss_pred             eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 024868          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (261)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd  182 (261)
                      +.+..+..|.+.|.+++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45667778888999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.87  E-value=1.2e-08  Score=52.82  Aligned_cols=36  Identities=17%  Similarity=0.388  Sum_probs=34.1

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEE
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE   91 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~   91 (261)
                      ...+.+|.+.|.+++|+|+++.|++++.|+.|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            567899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.87  E-value=2.3e-06  Score=64.21  Aligned_cols=175  Identities=14%  Similarity=0.145  Sum_probs=105.3

Q ss_pred             eEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEe-eCCcEEEEeccCCeEEEEEccCc
Q 024868           67 MTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSL  144 (261)
Q Consensus        67 ~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~~~d~~~~  144 (261)
                      .++.|.+ ++.++++-...+.|+.|+..++....         ... .....+++. ++++++++. ..+ +.++|..++
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~---------~~~-~~~~G~~~~~~~g~l~v~~-~~~-~~~~d~~~g   70 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV---------IDL-PGPNGMAFDRPDGRLYVAD-SGG-IAVVDPDTG   70 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE---------EES-SSEEEEEEECTTSEEEEEE-TTC-EEEEETTTT
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE---------Eec-CCCceEEEEccCCEEEEEE-cCc-eEEEecCCC
Confidence            3678888 56666665567889999988765311         111 126778888 666555544 444 566698887


Q ss_pred             eEEeeccc-----cCCceeEEEEcCCCCEEEEecCC--------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          145 RIILDEPK-----AHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       145 ~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      +.......     .......+++.|+|++.++....        +.+..++.. ++...... ... ..+.++|+|+++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~-~pNGi~~s~dg~~  147 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG-FPNGIAFSPDGKT  147 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES-SEEEEEEETTSSE
T ss_pred             cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc-cccceEECCcchh
Confidence            54322221     12357899999999977775543        446666665 45433333 333 4789999999997


Q ss_pred             ceEEEEEeeCCCcEEEEEECCCC-e-E--Eeee-eccC--cCeeEEEEeeCCCEEe
Q 024868          212 PFLFCTVQRGDKALLAVYDISTW-N-K--IGHK-RLLR--KPASVLSISLDGKYLA  260 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~~-~-~--~~~~-~~~~--~~v~~~~~s~dg~~la  260 (261)
                      +|    ++-+..+.|..|++... . .  ...+ ....  +..-.+++..+|+..+
T Consensus       148 ly----v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v  199 (246)
T PF08450_consen  148 LY----VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV  199 (246)
T ss_dssp             EE----EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred             ee----ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence            42    56677788999998532 2 1  1111 1122  2356788888887543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.86  E-value=7.9e-07  Score=71.37  Aligned_cols=116  Identities=12%  Similarity=0.147  Sum_probs=80.6

Q ss_pred             CCceEEEECC-CCCeEEEE----ecCCc----EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           64 GDPMTIAVNP-SGDDFVCS----TTNGG----CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        64 ~~v~~~~~~~-~~~~l~~~----~~dg~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      ....++.|+. +...+.+.    +.+|.    -.+|++...+...    .....++....+.+++++|+...++.|+.||
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr----vsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg  281 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR----VSVTSIPLPSQVICCARSPSEDKLVLGCEDG  281 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE----EEEEEEecCCcceEEecCcccceEEEEecCC
Confidence            3456777775 33334332    22332    3456665443211    1233344567899999999999999999999


Q ss_pred             eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC
Q 024868          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~  185 (261)
                      .|.+||...+...  .....-....++|+|+|..+++++..|.+++||+.-
T Consensus       282 SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  282 SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            9999998766432  222333578899999999999999999999999863

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=1.9e-07  Score=77.12  Aligned_cols=170  Identities=15%  Similarity=0.160  Sum_probs=117.2

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~  143 (261)
                      +.+++.+++  ++.|+.|..+|.+++++......         ..+.+...      ..+|.++++|+.||++.+-.+-+
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~---------~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~  102 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK---------TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFT  102 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCccc---------cccccccc------ccCCceEEEecCCCcEEEeeccC
Confidence            456666664  67899999999999999876531         11111111      55899999999999999988877


Q ss_pred             ceEEeeccccCCceeEEEEcCC-----CCEEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868          144 LRIILDEPKAHKSVLDMDFSLD-----SEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (261)
Q Consensus       144 ~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~  217 (261)
                      .+... ....+.++.+++++|+     .+.+++|+..| +.++.-+= |...........++|.++.|.  |.+     +
T Consensus       103 ~~~~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~l-----I  173 (846)
T KOG2066|consen  103 DDEIT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNL-----I  173 (846)
T ss_pred             Cccce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcE-----E
Confidence            76643 3345668999999998     56899999888 77765431 222222222334579999995  565     5


Q ss_pred             EeeCCCcEEEEEECCCCeEEeeeeccCc------CeeEEEEeeCCCEEe
Q 024868          218 VQRGDKALLAVYDISTWNKIGHKRLLRK------PASVLSISLDGKYLA  260 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~v~~~~~s~dg~~la  260 (261)
                      +.++++| |++||+.+++.+..+.....      ....+.|.++.+.++
T Consensus       174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI  221 (846)
T KOG2066|consen  174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI  221 (846)
T ss_pred             EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence            7777777 99999998887755543322      235678887776653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=7.4e-08  Score=76.60  Aligned_cols=196  Identities=11%  Similarity=0.138  Sum_probs=126.6

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~   98 (261)
                      .+-+++++.|.      .+++|...++..... ........+.|+.+|.++.|-.+-++++++  ||.+.+||---++..
T Consensus       747 ENSFiSASkDK------TVKLWSik~EgD~~~-tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~L  817 (1034)
T KOG4190|consen  747 ENSFISASKDK------TVKLWSIKPEGDEIG-TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLL  817 (1034)
T ss_pred             ccceeeccCCc------eEEEEEeccccCccc-cceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchh
Confidence            34556666666      347777777654432 223466788999999999999888888764  777999998766542


Q ss_pred             cceeeeeCCCCCCCCCeEEEEEee--CCcEEEEe-ccCCeEEEEEccCceEEeecc-----ccCCceeEEEEcCCCCEEE
Q 024868           99 INLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAG-GVDGHLRIMHWPSLRIILDEP-----KAHKSVLDMDFSLDSEFLA  170 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~  170 (261)
                      .+..     .-..++.+..+..-|  +...+..+ +...+++++|.+..+-...+.     ..+.-+++++..|.|++++
T Consensus       818 aq~~-----dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lA  892 (1034)
T KOG4190|consen  818 AQME-----DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLA  892 (1034)
T ss_pred             Hhhh-----cCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhh
Confidence            2211     111223333333334  34444444 678899999998876443332     2234589999999999999


Q ss_pred             EecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE-EECCCCe
Q 024868          171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV-YDISTWN  235 (261)
Q Consensus       171 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~-~d~~~~~  235 (261)
                      .+-.+|.|.+.|.++|+.+..+..-... ...++ .|..+.     ++....|.++.+ |..-.+.
T Consensus       893 a~LSnGci~~LDaR~G~vINswrpmecd-llqla-apsdq~-----L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  893 AALSNGCIAILDARNGKVINSWRPMECD-LLQLA-APSDQA-----LAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             HHhcCCcEEEEecCCCceeccCCcccch-hhhhc-CchhHH-----HHhhcccceeEeeehhcCCe
Confidence            9999999999999999988876543221 22222 244444     355555666666 6655444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.85  E-value=4.5e-06  Score=62.27  Aligned_cols=187  Identities=19%  Similarity=0.199  Sum_probs=110.1

Q ss_pred             EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc
Q 024868           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN  100 (261)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  100 (261)
                      .+.++..++        .++.+|..+++...    ...+.+.....  .  ..++..++++..++.++.+|..+++....
T Consensus        38 ~v~~~~~~~--------~l~~~d~~tG~~~W----~~~~~~~~~~~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~  101 (238)
T PF13360_consen   38 RVYVASGDG--------NLYALDAKTGKVLW----RFDLPGPISGA--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWS  101 (238)
T ss_dssp             EEEEEETTS--------EEEEEETTTSEEEE----EEECSSCGGSG--E--EEETTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred             EEEEEcCCC--------EEEEEECCCCCEEE----Eeeccccccce--e--eecccccccccceeeeEecccCCcceeee
Confidence            344445666        89999988877511    22222111111  1  22455666677888899999888876444


Q ss_pred             eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCc----e-------eEEEEcCCCCEE
Q 024868          101 LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS----V-------LDMDFSLDSEFL  169 (261)
Q Consensus       101 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----v-------~~~~~s~~~~~l  169 (261)
                      ........   ...........++..++++..++.+..+|.++|+.+.........    +       ..+.+. ++ .+
T Consensus       102 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v  176 (238)
T PF13360_consen  102 IYLTSSPP---AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RV  176 (238)
T ss_dssp             EEE-SSCT---CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EE
T ss_pred             eccccccc---cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EE
Confidence            21111111   111222333334778888878999999999999987766543321    1       222233 44 66


Q ss_pred             EEecCCCc-EEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868          170 ATTSTDGS-ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (261)
Q Consensus       170 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  238 (261)
                      +.++.++. +.+ |+.+++.+....  .. .+... ..+++..     ++..+.++.+..||+++|+.+-
T Consensus       177 ~~~~~~g~~~~~-d~~tg~~~w~~~--~~-~~~~~-~~~~~~~-----l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  177 YVSSGDGRVVAV-DLATGEKLWSKP--IS-GIYSL-PSVDGGT-----LYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEECCTSSEEEE-ETTTTEEEEEEC--SS--ECEC-EECCCTE-----EEEEETTTEEEEEETTTTEEEE
T ss_pred             EEEcCCCeEEEE-ECCCCCEEEEec--CC-CccCC-ceeeCCE-----EEEEeCCCEEEEEECCCCCEEe
Confidence            66666775 555 999999664222  22 23331 4566666     3444478999999999998763

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=3.6e-06  Score=70.39  Aligned_cols=197  Identities=11%  Similarity=0.104  Sum_probs=123.7

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC-ceEEEECCCCCeEEEEecCC-----cEEEEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTNG-----GCKLFEV   92 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~i~~~   92 (261)
                      ...+|.|..+|        .|+.++..-..       ...++.+... |..+-...+.++|++.+.|+     .+++|++
T Consensus        35 ~~~vvigt~~G--------~V~~Ln~s~~~-------~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   35 TGSVVIGTADG--------RVVILNSSFQL-------IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             CceEEEeeccc--------cEEEeccccee-------eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence            45788888888        88877754322       2345556555 44444444446777777764     4899999


Q ss_pred             eCCcccc--ceee-eeC---CCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc----CceEEeeccccCCceeEEEE
Q 024868           93 YGGATDI--NLLA-KKM---PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP----SLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        93 ~~~~~~~--~~~~-~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~----~~~~~~~~~~~~~~v~~~~~  162 (261)
                      +....-.  .... ..+   .......++.+++.+.+-+.+|+|-.+|.|..+.-+    .+..........++|+.+.+
T Consensus       100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence            7653211  1110 001   111235678999999999999999999999988522    11222222234458999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      ..+++.++....-.+|.+|.+....+......+++....|..|++....     ++.++ +..+.+||....++
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-----fIca~-~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-----FICAG-SEFLYFYDSDGRGP  247 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-----EEEec-CceEEEEcCCCcce
Confidence            9888874444455789999998444344433445557888888876664     23333 34699999875443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.83  E-value=2.1e-08  Score=72.11  Aligned_cols=162  Identities=13%  Similarity=0.136  Sum_probs=97.1

Q ss_pred             CceeeEEEEEeeCCc-------ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC
Q 024868            4 GGTVTCGSWIKRPEN-------VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD   76 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   76 (261)
                      .+|-.|++.+..|+.       .+-+++|+.++        .+..++.+. .+..    ......-...-.+.++...++
T Consensus        79 i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg--------~~~v~s~~~-~~~~----~~~i~~~~~~~as~~~~~~~~  145 (319)
T KOG4714|consen   79 IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADG--------SLAVFSTDK-DLAL----MSRIPSIHSGSASRKICRHGN  145 (319)
T ss_pred             cCceeeeeccCCCCCcccccccCCceEecCCCc--------eEEEEechH-HHhh----hhhcccccccccccceeeccc
Confidence            455566665433321       34567777777        555565544 2100    111111111122333334455


Q ss_pred             eEEEEe-----cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeec
Q 024868           77 DFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (261)
Q Consensus        77 ~l~~~~-----~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~  150 (261)
                      .+.++.     .-+..+.|+++..+.    +   .........|.+++-+| +.+.+++|+.||.+-+||.++......+
T Consensus       146 ~i~s~~~g~~n~~d~~~a~~~~p~~t----~---~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~  218 (319)
T KOG4714|consen  146 SILSGGCGNWNAQDNFYANTLDPIKT----L---IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL  218 (319)
T ss_pred             EEecCCcceEeeccceeeeccccccc----c---cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH
Confidence            554432     224466666654432    1   11111234588888888 4567778889999999999987655444


Q ss_pred             -cccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccC
Q 024868          151 -PKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED  185 (261)
Q Consensus       151 -~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~  185 (261)
                       ..|+.++..+-|+| ++..|++++.||.+.-||..+
T Consensus       219 l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  219 LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence             45666899999999 788999999999999999764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.82  E-value=3.1e-07  Score=72.65  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=93.2

Q ss_pred             CCCCCeEEEEe---------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868           72 NPSGDDFVCST---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (261)
Q Consensus        72 ~~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~  142 (261)
                      |||+++++...         ..+.+.+||+.++....        .......+....|||+|+.++.. .++.|++++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------LTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------SS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------CcCCccccccceeecCCCeeEEE-ecCceEEEECC
Confidence            57888777642         23678999998865311        11114577889999999999998 67889999987


Q ss_pred             CceEEeecccc-----------------CCceeEEEEcCCCCEEEEecCC-Cc---------------------------
Q 024868          143 SLRIILDEPKA-----------------HKSVLDMDFSLDSEFLATTSTD-GS---------------------------  177 (261)
Q Consensus       143 ~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~d-~~---------------------------  177 (261)
                      +++..+.....                 -+.-..+.||||+++|+....| ..                           
T Consensus        72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~  151 (353)
T PF00930_consen   72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA  151 (353)
T ss_dssp             TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred             CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence            77554333322                 1123568899999998865432 22                           


Q ss_pred             --------EEEEEccCCcEEEE-Ee---ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          178 --------ARIWKTEDGVAWTF-LT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       178 --------i~iwd~~~~~~~~~-~~---~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                              +.|+|+.+++.... ..   ......+..+.|.++++.+++..+--....-.+.++|..+++.
T Consensus       152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~  222 (353)
T PF00930_consen  152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET  222 (353)
T ss_dssp             TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred             CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence                    33344444433211 11   1123347789999999854433233334445677888877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.77  E-value=7.2e-06  Score=61.85  Aligned_cols=186  Identities=16%  Similarity=0.112  Sum_probs=116.2

Q ss_pred             CCceEEEECC-CCCeEEEEecCC-cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-----cCCeE
Q 024868           64 GDPMTIAVNP-SGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHL  136 (261)
Q Consensus        64 ~~v~~~~~~~-~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~d~~i  136 (261)
                      .....++.+| .+..++.+-.-| .+.+||..++.....+....     ...-.-.-.||+||++|++.-     ..|.|
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-----gRHFyGHg~fs~dG~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-----GRHFYGHGVFSPDGRLLYTTENDYETGRGVI   79 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-----CCEEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence            3455788889 445555665554 56789998887643322211     111223468999999999864     34789


Q ss_pred             EEEEcc-CceEEeeccccCCceeEEEEcCCCCEEEEecC------------------CCcEEEEEccCCcEEEEEee---
Q 024868          137 RIMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTST------------------DGSARIWKTEDGVAWTFLTR---  194 (261)
Q Consensus       137 ~~~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~~---  194 (261)
                      -+||.. +-+.+..+..+.-....+.+.|||+.|+.+..                  +-++...|..+|+.+.+...   
T Consensus        80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence            999998 44555555544445678889999977766422                  12466777888888776432   


Q ss_pred             cCCCceEEEEEecCCCcceEEEEEeeCCCc-------EEEEEECCCCeEEeeee-------ccCcCeeEEEEeeCCCEEe
Q 024868          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKA-------LLAVYDISTWNKIGHKR-------LLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~-------~i~~~d~~~~~~~~~~~-------~~~~~v~~~~~s~dg~~la  260 (261)
                      .+...++.+++.++|..     ++.....|       .+.+++...  .+..+.       ...+.+-+++++++|.++|
T Consensus       160 ~~~lSiRHLa~~~~G~V-----~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia  232 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTV-----AFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA  232 (305)
T ss_pred             ccccceeeEEecCCCcE-----EEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence            22235999999999985     22222222       344444332  221121       2346788999999998876


Q ss_pred             C
Q 024868          261 M  261 (261)
Q Consensus       261 ~  261 (261)
                      +
T Consensus       233 ~  233 (305)
T PF07433_consen  233 V  233 (305)
T ss_pred             E
Confidence            3

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=1.5e-05  Score=63.66  Aligned_cols=184  Identities=12%  Similarity=0.124  Sum_probs=124.9

Q ss_pred             CceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEEE
Q 024868           65 DPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMH  140 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d  140 (261)
                      ....+++++.++.+.... .+..+.+.|.........        ..-......++++|+++.+.++..   ++++.+.|
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~--------~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid  146 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS--------IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID  146 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE--------eeeccCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence            355788889888655444 458899999665543111        111124577999999988877754   68899999


Q ss_pred             ccCceEEeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEEEEe----ecCCCceEEEEEecCCCcceEE
Q 024868          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      -.+.+..........+ ..++++|+|+.++... .++.+.+.|.......+ -.    .........+.++|+|++.|+ 
T Consensus       147 ~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV-  223 (381)
T COG3391         147 AATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV-  223 (381)
T ss_pred             CCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE-
Confidence            8888877665444445 8999999999766554 68899999977665553 11    011223567899999997543 


Q ss_pred             EEEeeCCCcEEEEEECCCCeEEeeeeccCc-CeeEEEEeeCCCEEe
Q 024868          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLA  260 (261)
Q Consensus       216 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~dg~~la  260 (261)
                       ....+.++.+...|..++........... ....+..+|+|+++.
T Consensus       224 -~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~y  268 (381)
T COG3391         224 -ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAY  268 (381)
T ss_pred             -EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEE
Confidence             33344457999999998877654222222 456788999998764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.75  E-value=7.6e-06  Score=65.90  Aligned_cols=156  Identities=12%  Similarity=0.044  Sum_probs=90.8

Q ss_pred             eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeeccccC
Q 024868           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (261)
Q Consensus        77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  154 (261)
                      .++.+..+|.+..+|..+++.....................+.-+|  .+..+++++.+|.+..+|..+++.+.+.... 
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-  285 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG-  285 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC-
Confidence            4566677888888888877653321100000000000011111122  2445666668899999999999887654321 


Q ss_pred             CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                       ....+.  .++..++.++.++.+..+|..+|+.+............+... -++.      ++.++.+|.++..|..+|
T Consensus       286 -~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~------l~v~~~~G~l~~ld~~tG  355 (394)
T PRK11138        286 -SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGY------LVVGDSEGYLHWINREDG  355 (394)
T ss_pred             -CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCE------EEEEeCCCEEEEEECCCC
Confidence             111222  246677788889999999999998765443211111222222 2343      466788999999999999


Q ss_pred             eEEeeeecc
Q 024868          235 NKIGHKRLL  243 (261)
Q Consensus       235 ~~~~~~~~~  243 (261)
                      +.+......
T Consensus       356 ~~~~~~~~~  364 (394)
T PRK11138        356 RFVAQQKVD  364 (394)
T ss_pred             CEEEEEEcC
Confidence            987665543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.71  E-value=3.8e-06  Score=72.75  Aligned_cols=231  Identities=11%  Similarity=0.119  Sum_probs=125.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      |...|.++.|.-+   .+-++++...|        .|...|+.+..+       .....-.+.|.+++|+||.+.++..+
T Consensus        67 gd~~i~s~~fl~d---~~~i~v~~~~G--------~iilvd~et~~~-------eivg~vd~GI~aaswS~Dee~l~liT  128 (1265)
T KOG1920|consen   67 GDDEIVSVQFLAD---TNSICVITALG--------DIILVDPETLEL-------EIVGNVDNGISAASWSPDEELLALIT  128 (1265)
T ss_pred             CCcceEEEEEecc---cceEEEEecCC--------cEEEEcccccce-------eeeeeccCceEEEeecCCCcEEEEEe
Confidence            3456777777765   34555555566        666678877664       23333457899999999999999888


Q ss_pred             cCCcEEEEEEeCCcc-ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           83 TNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      ..+++.+.+.. ... ..+.+   .......+..-.+-|-...+.+ -| ..|.....+....+........++.=..+.
T Consensus       129 ~~~tll~mT~~-f~~i~E~~L---~~d~~~~sk~v~VGwGrkeTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~~~~~~Is  202 (1265)
T KOG1920|consen  129 GRQTLLFMTKD-FEPIAEKPL---DADDERKSKFVNVGWGRKETQF-RG-SEGRQAARQKIEKEKALEQIEQDDHKTSIS  202 (1265)
T ss_pred             CCcEEEEEecc-ccchhcccc---ccccccccccceecccccceee-ec-chhhhcccccccccccccchhhccCCceEE
Confidence            88877665432 111 00000   0000111222223332221111 11 112222111111111011111223346799


Q ss_pred             EcCCCCEEEEe-----cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC--
Q 024868          162 FSLDSEFLATT-----STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--  234 (261)
Q Consensus       162 ~s~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~--  234 (261)
                      |--||+++|+.     .....+++||-+ |..-. .......--.+++|-|.|..+  .++-....|+.|.+|....-  
T Consensus       203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-~se~~~~l~~~LsWkPsgs~i--A~iq~~~sd~~IvffErNGL~h  278 (1265)
T KOG1920|consen  203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-TSEPVEGLQHSLSWKPSGSLI--AAIQCKTSDSDIVFFERNGLRH  278 (1265)
T ss_pred             EccCCcEEEEEEEeccCCceeEEEeccc-chhhc-ccCcccccccceeecCCCCeE--eeeeecCCCCcEEEEecCCccc
Confidence            99999999883     223789999976 44322 222222235679999999872  22333455668999985432  


Q ss_pred             -eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          235 -NKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       235 -~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                       +..-.......++..++|+.++..||+
T Consensus       279 g~f~l~~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  279 GEFVLPFPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             cccccCCcccccchheeeecCCCCceee
Confidence             211112233345899999999999885

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.70  E-value=8.9e-07  Score=72.70  Aligned_cols=93  Identities=6%  Similarity=-0.028  Sum_probs=62.4

Q ss_pred             CeEEEEEccC----ceEEeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcE------------EEEEeecC
Q 024868          134 GHLRIMHWPS----LRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA------------WTFLTRNS  196 (261)
Q Consensus       134 ~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~------------~~~~~~~~  196 (261)
                      +.|.+.|..+    +..+.....-......+.++|||+++++++ .+..+.|.|+.+.+.            ..+.... 
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-  374 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-  374 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-
Confidence            4577777766    222333333344668899999999988766 489999999987542            3333322 


Q ss_pred             CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       197 ~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                       ......+|.++|..     ..+-.-|.+|..||+.+
T Consensus       375 -lGPLHTaFDg~G~a-----ytslf~dsqv~kwn~~~  405 (635)
T PRK02888        375 -LGPLHTAFDGRGNA-----YTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             -CCcceEEECCCCCE-----EEeEeecceeEEEehHH
Confidence             23556789998874     23444577899999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.69  E-value=3.2e-05  Score=57.42  Aligned_cols=191  Identities=13%  Similarity=0.146  Sum_probs=105.4

Q ss_pred             eecCCCCCceEEEECCCCCeE-EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeE
Q 024868           58 VFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  136 (261)
                      .+++-...+..++|+|+.+.| ++....+.|..++.. ++. .+     ...+...+....+++.-++.++++.-.++.+
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v-lr-----~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L   88 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV-LR-----RIPLDGFGDYEGITYLGNGRYVLSEERDQRL   88 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-EE-----EEE-SS-SSEEEEEE-STTEEEEEETTTTEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE-EE-----EEeCCCCCCceeEEEECCCEEEEEEcCCCcE
Confidence            455666679999999986655 455556777666653 222 11     1123345667889998888887777678999


Q ss_pred             EEEEccCce----E--Ee--e--cc-ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC---CcEEEEEee-------c
Q 024868          137 RIMHWPSLR----I--IL--D--EP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLTR-------N  195 (261)
Q Consensus       137 ~~~d~~~~~----~--~~--~--~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~-------~  195 (261)
                      .++++....    .  ..  .  .. .++..+..++|+|.++.|+.+-...-..+|.++.   ...+.....       .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            999883321    1  01  1  11 2334689999999877776666665666666653   222221110       1


Q ss_pred             CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC---------cCeeEEEEeeCCCEEe
Q 024868          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLA  260 (261)
Q Consensus       196 ~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~dg~~la  260 (261)
                      ....+.+++++|....+    ++.+.....|..+| .+|+.+..+....         ...-.++|.++|+..+
T Consensus       169 ~~~d~S~l~~~p~t~~l----liLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI  237 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHL----LILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI  237 (248)
T ss_dssp             -SS---EEEEETTTTEE----EEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred             eeccccceEEcCCCCeE----EEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence            11247889999987764    35577888999999 5677766555433         2467899999998654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.66  E-value=1.4e-06  Score=69.90  Aligned_cols=74  Identities=20%  Similarity=0.307  Sum_probs=60.7

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~  141 (261)
                      ....|.+.+++|+.+.++.|..||.|.+||...+....         ....-.+..++|+|+|..+++|+..|.+.+||+
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---------~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---------AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---------eeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            45789999999999999999999999999997664211         111234578999999999999999999999998


Q ss_pred             cCc
Q 024868          142 PSL  144 (261)
Q Consensus       142 ~~~  144 (261)
                      .-.
T Consensus       329 ALs  331 (545)
T PF11768_consen  329 ALS  331 (545)
T ss_pred             ecC
Confidence            643

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.66  E-value=4.3e-07  Score=76.21  Aligned_cols=140  Identities=16%  Similarity=0.264  Sum_probs=103.6

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec---------CCcEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---------NGGCKL   89 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i   89 (261)
                      ..++.+|...|        +|..-|+.+-+.      .+.+..|++.+.+++.  .|+.|++++.         |..|+|
T Consensus       187 nr~lf~G~t~G--------~V~LrD~~s~~~------iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV  250 (1118)
T KOG1275|consen  187 NRNLFCGDTRG--------TVFLRDPNSFET------IHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV  250 (1118)
T ss_pred             CcEEEeecccc--------eEEeecCCcCce------eeeeeccccceeeeec--cCCeEEEeecccccccccccchhhh
Confidence            45788888888        899999888765      7789999999988766  6888988875         567899


Q ss_pred             EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEc---cCceE-EeeccccCCceeEEEEcC
Q 024868           90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHW---PSLRI-ILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~---~~~~~-~~~~~~~~~~v~~~~~s~  164 (261)
                      ||++..+.        +.++.-.....-+.|.|. ...+++++..|...+-|.   .+... ..........+..+++|+
T Consensus       251 YDLRmmra--------l~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs  322 (1118)
T KOG1275|consen  251 YDLRMMRA--------LSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS  322 (1118)
T ss_pred             hhhhhhhc--------cCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC
Confidence            99988764        333322222355778884 457788889999999883   32211 122222234599999999


Q ss_pred             CCCEEEEecCCCcEEEEE
Q 024868          165 DSEFLATTSTDGSARIWK  182 (261)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd  182 (261)
                      +++.++.+..+|.|.+|-
T Consensus       323 n~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  323 NGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCceEEEecccCcEeeec
Confidence            999999999999999997

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.66  E-value=1.5e-05  Score=63.82  Aligned_cols=145  Identities=10%  Similarity=0.021  Sum_probs=87.4

Q ss_pred             EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc
Q 024868           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN  100 (261)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  100 (261)
                      .+.+++.++        .++.+|..+++...    ...+..  .....+..  ++..+++++.++.++.+|..+++...+
T Consensus        67 ~v~v~~~~g--------~v~a~d~~tG~~~W----~~~~~~--~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  130 (377)
T TIGR03300        67 KVYAADADG--------TVVALDAETGKRLW----RVDLDE--RLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWR  130 (377)
T ss_pred             EEEEECCCC--------eEEEEEccCCcEee----eecCCC--CcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeee
Confidence            556666667        89999987776422    111221  11112222  466788888899999999988775332


Q ss_pred             eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCce-----eEEEEcCCCCEEEEecCC
Q 024868          101 LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV-----LDMDFSLDSEFLATTSTD  175 (261)
Q Consensus       101 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~d  175 (261)
                      ...        ...+.+...- .+..++.+..++.++.+|.++++.+..........     .+...  .+..++.+..+
T Consensus       131 ~~~--------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~  199 (377)
T TIGR03300       131 AKL--------SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAG  199 (377)
T ss_pred             ecc--------CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCC
Confidence            110        1111111111 24466677789999999999998876654332211     11112  13467778888


Q ss_pred             CcEEEEEccCCcEEEEE
Q 024868          176 GSARIWKTEDGVAWTFL  192 (261)
Q Consensus       176 ~~i~iwd~~~~~~~~~~  192 (261)
                      +.+..+|.++|+.+...
T Consensus       200 g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       200 GKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CEEEEEEccCCCEeeee
Confidence            99999999999876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.66  E-value=8.7e-09  Score=82.82  Aligned_cols=207  Identities=14%  Similarity=0.165  Sum_probs=128.1

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEec-
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTT-   83 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-   83 (261)
                      -+.|++|.-+.+ +-++++|..+|        .|-.-......-.    .....+++....++++|++ |.+.||+|-. 
T Consensus        58 y~kcva~~y~~d-~cIlavG~atG--------~I~l~s~r~~hdS----s~E~tp~~ar~Ct~lAwneLDtn~LAagldk  124 (783)
T KOG1008|consen   58 YVKCVASFYGND-RCILAVGSATG--------NISLLSVRHPHDS----SAEVTPGYARPCTSLAWNELDTNHLAAGLDK  124 (783)
T ss_pred             CceeehhhcCCc-hhhhhhccccC--------ceEEeecCCcccc----cceecccccccccccccccccHHHHHhhhhh
Confidence            367888866542 46788888877        4433322221110    1335677888999999998 6777877733 


Q ss_pred             ---CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868           84 ---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (261)
Q Consensus        84 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~  160 (261)
                         |..+.|||+.+.-...+ ....... .......+++|-.+.+++++|...+.+.++|++..... ...-....+..+
T Consensus       125 hrnds~~~Iwdi~s~ltvPk-e~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~  201 (783)
T KOG1008|consen  125 HRNDSSLKIWDINSLLTVPK-ESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGI  201 (783)
T ss_pred             hcccCCccceecccccCCCc-ccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccc
Confidence               56799999987632000 0000111 11234457888888899999988989999998743221 111223357778


Q ss_pred             EEcC-CCCEEEEecCCCcEEEEE-ccCC-cEEEEEeec---CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          161 DFSL-DSEFLATTSTDGSARIWK-TEDG-VAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       161 ~~s~-~~~~l~~~~~d~~i~iwd-~~~~-~~~~~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      ..+| .+.++++-. |+.|.+|| .++- +++..+...   ....+..++|+|...-+.   +....+.++|++||+.
T Consensus       202 tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgll---a~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  202 TVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLL---AVLSRDSITIRLYDIC  275 (783)
T ss_pred             eecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchh---hhhccCcceEEEeccc
Confidence            8888 777887766 89999999 3322 222222111   112388899999765531   2334456789999986

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.65  E-value=8.6e-05  Score=57.09  Aligned_cols=214  Identities=15%  Similarity=0.076  Sum_probs=119.5

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~   98 (261)
                      ..++.+.-..+        +++.|++.++.       ...+... +.+.++..-..+..|+++ ..| +.+++.+.+...
T Consensus        37 ~~L~w~DI~~~--------~i~r~~~~~g~-------~~~~~~p-~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~   98 (307)
T COG3386          37 GALLWVDILGG--------RIHRLDPETGK-------KRVFPSP-GGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKI   98 (307)
T ss_pred             CEEEEEeCCCC--------eEEEecCCcCc-------eEEEECC-CCcccceeecCCCeEEEE-ccc-cEEEeccCCcee
Confidence            44555655566        88889887654       2233322 334444443344445543 444 677777544321


Q ss_pred             cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-----------CCeEEEEEccCceEEeeccccCCceeEEEEcCCCC
Q 024868           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE  167 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  167 (261)
                      .... . ...-......+.....|+|++.+....           -|.++.+|. .+..+.....+-..-..++||||++
T Consensus        99 t~~~-~-~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~  175 (307)
T COG3386          99 TLLA-E-PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGK  175 (307)
T ss_pred             EEec-c-ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCC
Confidence            1111 1 111111256678889999987665433           133444443 3444333333344567899999998


Q ss_pred             EEEEecC-CCcEEEEEccC--C----cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-cEEEEEECCCCeEEee
Q 024868          168 FLATTST-DGSARIWKTED--G----VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGH  239 (261)
Q Consensus       168 ~l~~~~~-d~~i~iwd~~~--~----~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-~~i~~~d~~~~~~~~~  239 (261)
                      .++.+.. .+.|+-|++..  +    +..........+..-.++...+|.+ +    +.+..+ +.|.+|+.. |+++..
T Consensus       176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-w----~~a~~~g~~v~~~~pd-G~l~~~  249 (307)
T COG3386         176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-W----VAAVWGGGRVVRFNPD-GKLLGE  249 (307)
T ss_pred             EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-E----EecccCCceEEEECCC-CcEEEE
Confidence            7776654 47888887752  1    2112222122234567788888886 2    233333 389999998 888877


Q ss_pred             eeccCcCeeEEEEe-eCCCEE
Q 024868          240 KRLLRKPASVLSIS-LDGKYL  259 (261)
Q Consensus       240 ~~~~~~~v~~~~~s-~dg~~l  259 (261)
                      +......+++++|- |+.+.|
T Consensus       250 i~lP~~~~t~~~FgG~~~~~L  270 (307)
T COG3386         250 IKLPVKRPTNPAFGGPDLNTL  270 (307)
T ss_pred             EECCCCCCccceEeCCCcCEE
Confidence            77665666777775 334433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=9.4e-07  Score=67.59  Aligned_cols=81  Identities=9%  Similarity=0.061  Sum_probs=64.4

Q ss_pred             eecCCCCCceEEEECCCCC-eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCe
Q 024868           58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH  135 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~  135 (261)
                      .+..|...|..++|+|..+ .+..++.+.+|+|.|+++...        .........+.+++|.-|. ++|..|...|.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--------vssy~a~~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--------VSSYIAYNQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEeccccee--------eeheeccCCceeeeeccCCcceeEEeccCce
Confidence            5677788899999999776 677888999999999998764        2223334789999999865 56777778999


Q ss_pred             EEEEEccCceE
Q 024868          136 LRIMHWPSLRI  146 (261)
Q Consensus       136 i~~~d~~~~~~  146 (261)
                      |.+||++..+.
T Consensus       260 VlvyD~R~~~~  270 (463)
T KOG1645|consen  260 VLVYDMRQPEG  270 (463)
T ss_pred             EEEEEccCCCc
Confidence            99999986553

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.64  E-value=5.6e-07  Score=75.55  Aligned_cols=170  Identities=13%  Similarity=0.089  Sum_probs=117.7

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  154 (261)
                      +..++.|+-...+..+|+.+.+....      .... .+.+.-+  -.+++.+.+|...|+|.+-|.++.+.+..+..|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~------~~v~-a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRT------TNVS-ASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeee------eecc-CCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence            44566666777788888887653111      0111 1224433  3468999999999999999999999999999998


Q ss_pred             CceeEEEEcCCCCEEEEecC---------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868          155 KSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (261)
Q Consensus       155 ~~v~~~~~s~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~  225 (261)
                      +.+.++..  .|+.|++++.         |.-|+|||+++.+.+.-+..+.+  ..-+.|+|.=...    ++..+..|.
T Consensus       218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~----~~V~S~sGq  289 (1118)
T KOG1275|consen  218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTR----LAVTSQSGQ  289 (1118)
T ss_pred             cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccce----EEEEecccc
Confidence            88877665  5889998876         44689999998887666554443  3456788865432    466667788


Q ss_pred             EEEEECC---CCe-EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          226 LAVYDIS---TWN-KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       226 i~~~d~~---~~~-~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ..+-|..   +.. .+......+..+..+.+|++|+.||+
T Consensus       290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alaf  329 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAF  329 (1118)
T ss_pred             eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEE
Confidence            8888833   221 12233344456899999999999884

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.61  E-value=3.5e-08  Score=82.48  Aligned_cols=182  Identities=14%  Similarity=0.113  Sum_probs=127.7

Q ss_pred             eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC--
Q 024868           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--  134 (261)
Q Consensus        57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--  134 (261)
                      ..+..|+...+|++|+-+.+.|+.|+..|.|++|++.++..       +...-.|..+++-+.=+.||..+++.+.-.  
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-------e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-------EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-------cccccccccccccccccCCcceeeeeccccCc
Confidence            35667888899999999999999999999999999999875       233344667888888888998877765333  


Q ss_pred             eEEEEEccCc-eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC---CCceEEEEEecCCC
Q 024868          135 HLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGT  210 (261)
Q Consensus       135 ~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~p~~~  210 (261)
                      -..+|++..- .....    ...-.++.|+..-+.-+.|+......+||++++.++.++....   ...-+.+.|+|+.+
T Consensus      1168 lsaLW~~~s~~~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             hHHHhccccccCcccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence            4678987541 11111    1245678898766655666666789999999998776643221   11235678999999


Q ss_pred             cceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .     ++   +||  .+||++..+.+..+.... .-..-.|+|.|.-++
T Consensus      1244 L-----Il---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1244 L-----IL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVI 1282 (1516)
T ss_pred             e-----Ee---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEE
Confidence            7     23   455  489999887765554333 223446888887665

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=1.4e-05  Score=66.41  Aligned_cols=205  Identities=13%  Similarity=0.079  Sum_probs=140.0

Q ss_pred             CceeeEEEEEeeCCc---------ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-
Q 024868            4 GGTVTCGSWIKRPEN---------VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-   73 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~---------~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-   73 (261)
                      +..|+.+.|.|.|..         ..++|++.-.|        +|..+|......      ...+..|.+++..+.|-+ 
T Consensus        55 ~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G--------rIil~d~~~~s~------~~~l~~~~~~~qdl~W~~~  120 (1062)
T KOG1912|consen   55 QSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG--------RIILVDFVLASV------INWLSHSNDSVQDLCWVPA  120 (1062)
T ss_pred             ccceeEEEeccCCCchhccCccccceeEEeccccC--------cEEEEEehhhhh------hhhhcCCCcchhheeeeec
Confidence            567999999886632         34566777777        888888766554      456778888999999965 


Q ss_pred             --CC-CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccC------
Q 024868           74 --SG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS------  143 (261)
Q Consensus        74 --~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~------  143 (261)
                        +. ..|++......+.+|+..+++...+       ....+....|+.+.| |.+.+...+..|.+.+-+.-.      
T Consensus       121 rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~  193 (1062)
T KOG1912|consen  121 RDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV  193 (1062)
T ss_pred             cCcchheeEEecCCcEEEEEEccCCceeec-------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC
Confidence              34 4667777788999999998875222       112245667789999 777777777778777665421      


Q ss_pred             -ceEEeeccccCC-------------------c------eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC
Q 024868          144 -LRIILDEPKAHK-------------------S------VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD  197 (261)
Q Consensus       144 -~~~~~~~~~~~~-------------------~------v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  197 (261)
                       ++..+....|.+                   .      .-.++|+|.-+.++.......+.++|++-..++.+.....+
T Consensus       194 pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~  273 (1062)
T KOG1912|consen  194 PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG  273 (1062)
T ss_pred             CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC
Confidence             111111111100                   0      12356788766666666778899999998888887776555


Q ss_pred             CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       198 ~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      + +.-+.|-|+++.-++   +....||.+.+|-.+.
T Consensus       274 ~-akfv~vlP~~~rd~L---fclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  274 G-AKFVDVLPDPRRDAL---FCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             C-cceeEeccCCCcceE---EEEecCCeEEEEEeec
Confidence            3 667888999887654   5556789999998764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.58  E-value=5.9e-05  Score=59.79  Aligned_cols=144  Identities=17%  Similarity=0.122  Sum_probs=79.7

Q ss_pred             CCCeEEEEEeeCCcEEEEec--cC---CeEEEEEccCceEEeecccc-CC---ceeEEEEc-CCCC-EEEEecCCCc--E
Q 024868          112 AGPQKCLSFSVDGSRFAAGG--VD---GHLRIMHWPSLRIILDEPKA-HK---SVLDMDFS-LDSE-FLATTSTDGS--A  178 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~--~d---~~i~~~d~~~~~~~~~~~~~-~~---~v~~~~~s-~~~~-~l~~~~~d~~--i  178 (261)
                      ...+..+.|.++++.|+..-  .+   ..+.++|..++......... ..   .-....|. +++. ++.....+|.  |
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            34578899999998444432  22   24677787765543222211 12   22355554 6555 4444556664  5


Q ss_pred             EEEEccCCcEEEEEeecCCCceE-EEEEecCCCcceEEEEEee--CCCcEEEEEECC-CCeEEeeeeccCcCeeEEEEee
Q 024868          179 RIWKTEDGVAWTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQR--GDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~~~~~~~~~--~~d~~i~~~d~~-~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      .+++...+.. +.+....- .|. -+.|+++++.+|.  .+..  .....|+.-++. .++.. .+......-..+.|||
T Consensus       263 y~~~~~~~~~-~~lT~G~~-~V~~i~~~d~~~~~iyf--~a~~~~p~~r~lY~v~~~~~~~~~-~LT~~~~~~~~~~~Sp  337 (353)
T PF00930_consen  263 YLYDLDGGKP-RQLTSGDW-EVTSILGWDEDNNRIYF--TANGDNPGERHLYRVSLDSGGEPK-CLTCEDGDHYSASFSP  337 (353)
T ss_dssp             EEEETTSSEE-EESS-SSS--EEEEEEEECTSSEEEE--EESSGGTTSBEEEEEETTETTEEE-ESSTTSSTTEEEEE-T
T ss_pred             EEEcccccce-eccccCce-eecccceEcCCCCEEEE--EecCCCCCceEEEEEEeCCCCCeE-eccCCCCCceEEEECC
Confidence            5556655553 34443332 364 4778899887542  2333  234567777777 55543 3443333336999999


Q ss_pred             CCCEEe
Q 024868          255 DGKYLA  260 (261)
Q Consensus       255 dg~~la  260 (261)
                      ||++++
T Consensus       338 dg~y~v  343 (353)
T PF00930_consen  338 DGKYYV  343 (353)
T ss_dssp             TSSEEE
T ss_pred             CCCEEE
Confidence            999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.55  E-value=9.9e-05  Score=55.02  Aligned_cols=148  Identities=17%  Similarity=0.181  Sum_probs=91.3

Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec-cc
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PK  152 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~  152 (261)
                      ++..+++++.++.|+.||..+++.......        .+.+.... ..++..++++..++.++.+|..+++.+... ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--------~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~  105 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--------PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT  105 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC--------SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec--------ccccccee-eecccccccccceeeeEecccCCcceeeeeccc
Confidence            566777778899999999988875333221        01111111 223445566667889999999999988773 32


Q ss_pred             cCC---ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc---------e-EEEEEecCCCcceEEEEEe
Q 024868          153 AHK---SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK---------I-ELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       153 ~~~---~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~p~~~~~~~~~~~~  219 (261)
                      ...   .........++..++.+..++.+..+|.++|+.+..........         . ..+.+ .++ .     +..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-----v~~  178 (238)
T PF13360_consen  106 SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-R-----VYV  178 (238)
T ss_dssp             SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-E-----EEE
T ss_pred             cccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-E-----EEE
Confidence            211   12223333347788888889999999999999988876533210         1 22222 244 4     355


Q ss_pred             eCCCcE-EEEEECCCCeEEe
Q 024868          220 RGDKAL-LAVYDISTWNKIG  238 (261)
Q Consensus       220 ~~~d~~-i~~~d~~~~~~~~  238 (261)
                      +..++. +.+ |+++++.+.
T Consensus       179 ~~~~g~~~~~-d~~tg~~~w  197 (238)
T PF13360_consen  179 SSGDGRVVAV-DLATGEKLW  197 (238)
T ss_dssp             ECCTSSEEEE-ETTTTEEEE
T ss_pred             EcCCCeEEEE-ECCCCCEEE
Confidence            555664 555 999998663

...

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.55  E-value=9.4e-05  Score=57.73  Aligned_cols=221  Identities=13%  Similarity=0.116  Sum_probs=109.9

Q ss_pred             cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc
Q 024868           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT   97 (261)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~   97 (261)
                      +..++..+..++..      +++..|..+.+.      .+...+.........++|+.+.++.......|+..|+.+.+.
T Consensus        47 G~kllF~s~~dg~~------nly~lDL~t~~i------~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~  114 (386)
T PF14583_consen   47 GRKLLFASDFDGNR------NLYLLDLATGEI------TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE  114 (386)
T ss_dssp             S-EEEEEE-TTSS-------EEEEEETTT-EE------EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred             CCEEEEEeccCCCc------ceEEEEcccCEE------EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence            35666666656655      899999999874      333332223344566788888887665666788888877653


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEec---c-------------------CCeEEEEEccCceEEeecccc
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGG---V-------------------DGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~---~-------------------d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      . .+..     . ....+-...|..  |++.++..-   .                   ...|.-.|+.+++. ..+...
T Consensus       115 ~-~vy~-----~-p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~-~~v~~~  186 (386)
T PF14583_consen  115 R-VVYE-----V-PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER-KVVFED  186 (386)
T ss_dssp             E-EEEE--------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E-EEEEEE
T ss_pred             E-EEEE-----C-CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce-eEEEec
Confidence            1 1111     1 122333355543  566554321   1                   12355667777765 334445


Q ss_pred             CCceeEEEEcC-CCCEEEEecC---CC-cEEEEEccC-CcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868          154 HKSVLDMDFSL-DSEFLATTST---DG-SARIWKTED-GVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       154 ~~~v~~~~~s~-~~~~l~~~~~---d~-~i~iwd~~~-~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i  226 (261)
                      ...+..+.|+| |...|+.|-.   +. .-+||-+++ +...+.+..+. ...+..=-|.|||..++......++.+..|
T Consensus       187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i  266 (386)
T PF14583_consen  187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI  266 (386)
T ss_dssp             SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred             CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence            55788899999 4556666543   22 135666553 33333332222 224556679999998544333355667789


Q ss_pred             EEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .-+|..+++.......  .....+--++||+++|
T Consensus       267 ~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~v  298 (386)
T PF14583_consen  267 AGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFV  298 (386)
T ss_dssp             EEE-TTT--EEEEEEE---SEEEEEE-TTSSEEE
T ss_pred             EeeCCCCCCceEEEeC--CceeeeEEcCCCCEEE
Confidence            9999998875432221  2344566678888875

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.54  E-value=9.4e-07  Score=72.72  Aligned_cols=182  Identities=9%  Similarity=0.093  Sum_probs=119.8

Q ss_pred             CceEEEECCC--CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEc
Q 024868           65 DPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHW  141 (261)
Q Consensus        65 ~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~  141 (261)
                      .|..+.|+|.  -.+-++......-.+|++.......    -+.....|...++++.|+|+. ..+++++.|..+..||+
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a----Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~  144 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA----IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDM  144 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccc----eEEEEecCccceeccccCCCCCcceeeccccccceeeec
Confidence            4677888774  3344555556667889986543211    113334566889999999954 57888999999999999


Q ss_pred             cCceE-EeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868          142 PSLRI-ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       142 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  219 (261)
                      ++... +.....-+.....+.|+.....+.+.+..+.|.+||++.| .++..++++.. .++.++|+.--...    +.+
T Consensus       145 rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~----~~s  219 (1081)
T KOG0309|consen  145 RSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSE----IMS  219 (1081)
T ss_pred             cCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhhh----hcc
Confidence            87653 3344444556788999885555555567788999999865 46667776544 57788776532221    478


Q ss_pred             eCCCcEEEEEECCCCeEE-eeeeccCcCeeEEEEeeC
Q 024868          220 RGDKALLAVYDISTWNKI-GHKRLLRKPASVLSISLD  255 (261)
Q Consensus       220 ~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~d  255 (261)
                      .+.|++|+.||....... .....-..++....+-|=
T Consensus       220 ~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf  256 (1081)
T KOG0309|consen  220 SSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF  256 (1081)
T ss_pred             cCCCCceeeecccccccccceeccccCcceecccccc
Confidence            899999999998754332 122223345555555553

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.54  E-value=3.5e-06  Score=68.97  Aligned_cols=151  Identities=14%  Similarity=0.182  Sum_probs=98.1

Q ss_pred             cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc
Q 024868           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT   97 (261)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~   97 (261)
                      ...+++.|.+.|        .+|.|+..++...     .....+..+.+.....+++..++|.|+..|.|.++.+.....
T Consensus        44 t~~~l~~GsS~G--------~lyl~~R~~~~~~-----~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   44 TEEYLAMGSSAG--------SVYLYNRHTGEMR-----KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CCceEEEecccc--------eEEEEecCchhhh-----cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence            356899999999        8999998877641     112222445566777899888899999999999999887543


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce----EEeeccccCCceeEEEEcCCCCEEEEec
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTS  173 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~  173 (261)
                      ....... .....|...|++++|++++..+++|...|+|.+-.+.+..    ..+.+....+.|-.++.. ++.+|++..
T Consensus       111 ~~~~~~t-~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl  188 (726)
T KOG3621|consen  111 RDLDYVT-PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL  188 (726)
T ss_pred             Ccceeec-cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence            2222211 1122357899999999999999999999999988776621    111222233455555544 344444443


Q ss_pred             CCCcEEEEEccC
Q 024868          174 TDGSARIWKTED  185 (261)
Q Consensus       174 ~d~~i~iwd~~~  185 (261)
                      ..  ..+++++.
T Consensus       189 ~r--~~Lc~tE~  198 (726)
T KOG3621|consen  189 TR--CILCQTEA  198 (726)
T ss_pred             hh--hheeecch
Confidence            32  34555543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=0.00023  Score=56.99  Aligned_cols=178  Identities=12%  Similarity=0.114  Sum_probs=117.1

Q ss_pred             CceEEEECCCCCeEEEEec---CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEE
Q 024868           65 DPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMH  140 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d  140 (261)
                      ....++++|+++.+..+..   ++++.+.|-.+......       ......+ ..++++|+|..++... .++.+.+.|
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-------~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~  188 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-------IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID  188 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-------EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence            6778999999988877665   56777777766654221       1111123 7899999999777765 688999999


Q ss_pred             ccCceEEe-e---ccccCCceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEE-EeecCCCceEEEEEecCCCcc
Q 024868          141 WPSLRIIL-D---EPKAHKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTF-LTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       141 ~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      ........ .   ..........+.++|+|++++.....   +.+...|..++..... ...... ....+..+|+|+..
T Consensus       189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~  267 (381)
T COG3391         189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAA  267 (381)
T ss_pred             CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEE
Confidence            76555432 1   11222345789999999977765543   5899999988877665 332232 35678899999984


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeeeeccC---cCeeEEEEeeC
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---KPASVLSISLD  255 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~s~d  255 (261)
                      +    +.-...+.+.+-|..+...........   ..+..+++.+.
T Consensus       268 y----v~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         268 Y----VANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             E----EEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            3    222346789999998877665444332   23455555553

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=3.6e-06  Score=65.44  Aligned_cols=196  Identities=13%  Similarity=0.069  Sum_probs=128.2

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeCCcc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGAT   97 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~   97 (261)
                      ..++..++-++        .+..|.+.....   ......+..|-..+.+++.+-++..+.+.+. |..++++|+.+...
T Consensus        20 a~fiiqASlDG--------h~KFWkKs~isG---vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dm   88 (558)
T KOG0882|consen   20 AKFIIQASLDG--------HKKFWKKSRISG---VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDM   88 (558)
T ss_pred             hheEEeeecch--------hhhhcCCCCccc---eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccch
Confidence            45677787788        566665544111   0113346677888999999999998888777 99999999987654


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEee-CC---cEEEEe-ccCCeEEEEEccCce--EEeeccccCCceeEEEEcCCCCEEE
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSV-DG---SRFAAG-GVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLA  170 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~---~~l~~~-~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~  170 (261)
                      ...+-   ...+     ...+.|.. .|   ..|+++ -.++.+.++|-....  ......-|..+|..+.++|-+..++
T Consensus        89 inmiK---L~~l-----Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v  160 (558)
T KOG0882|consen   89 INMIK---LVDL-----PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV  160 (558)
T ss_pred             hhhcc---cccC-----CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence            21100   1111     11223322 22   134443 367899999965433  2222334557999999999999999


Q ss_pred             EecCCCcEEEEEccC------CcEEEEEee--------cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          171 TTSTDGSARIWKTED------GVAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       171 ~~~~d~~i~iwd~~~------~~~~~~~~~--------~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      +....|.|.-|....      .+....++.        .......++.|+|+|..     +.+-+.|..|++++.++++.
T Consensus       161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-----istl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-----ISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-----ccccCcccEEEEEEeccchh
Confidence            998899999998762      111111111        11224678999999998     57778999999999998876


Q ss_pred             Ee
Q 024868          237 IG  238 (261)
Q Consensus       237 ~~  238 (261)
                      ++
T Consensus       236 vq  237 (558)
T KOG0882|consen  236 VQ  237 (558)
T ss_pred             hh
Confidence            53

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.43  E-value=7.4e-05  Score=65.21  Aligned_cols=197  Identities=18%  Similarity=0.203  Sum_probs=113.8

Q ss_pred             CCCCCceEEEECCCCCeEEEEecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE
Q 024868           61 ESEGDPMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (261)
Q Consensus        61 ~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~  138 (261)
                      .|.+...+...+|.-..++++...+  .+..+.+..... ..+.......-.+...|.++.|-.+...++.+...|.|.+
T Consensus        16 ~~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~k-v~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iil   94 (1265)
T KOG1920|consen   16 AGPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGK-VRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIIL   94 (1265)
T ss_pred             CCCCchhheeeccccceeeeceeeecccccceeeecccc-ccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEE
Confidence            3444445555566554555542221  133444433221 1111112222234568999999999999999999999999


Q ss_pred             EEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc----C-------------------CcEEEEEeec
Q 024868          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE----D-------------------GVAWTFLTRN  195 (261)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~----~-------------------~~~~~~~~~~  195 (261)
                      -|..+.... ..-.-...|.+++||||++.++..+...++.+-+-.    .                   |+....+.+.
T Consensus        95 vd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs  173 (1265)
T KOG1920|consen   95 VDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGS  173 (1265)
T ss_pred             Eccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecc
Confidence            987766542 223334589999999999999988877766654320    0                   1111111110


Q ss_pred             C--------------------CCceEEEEEecCCCcceEEEEEeeCCC-cEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          196 S--------------------DEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       196 ~--------------------~~~v~~~~~~p~~~~~~~~~~~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      .                    ...-..+.|--||++ |.+..+....+ ..|++||.+ |..-..-....+--.+++|-|
T Consensus       174 ~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP  251 (1265)
T KOG1920|consen  174 EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP  251 (1265)
T ss_pred             hhhhcccccccccccccchhhccCCceEEEccCCcE-EEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC
Confidence            0                    011235899999998 33333333444 899999987 433211112223346789999


Q ss_pred             CCCEEeC
Q 024868          255 DGKYLAM  261 (261)
Q Consensus       255 dg~~la~  261 (261)
                      .|..+|+
T Consensus       252 sgs~iA~  258 (1265)
T KOG1920|consen  252 SGSLIAA  258 (1265)
T ss_pred             CCCeEee
Confidence            9888874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=6.6e-06  Score=69.07  Aligned_cols=71  Identities=13%  Similarity=0.069  Sum_probs=53.5

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      +++++|+|.   ..+++.|-.-|        .+..|...+.+.      ......|+.+|..+.|||+|..|+++..-|.
T Consensus        62 atSLCWHpe---~~vLa~gwe~g--------~~~v~~~~~~e~------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~  124 (1416)
T KOG3617|consen   62 ATSLCWHPE---EFVLAQGWEMG--------VSDVQKTNTTET------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGS  124 (1416)
T ss_pred             hhhhccChH---HHHHhhccccc--------eeEEEecCCcee------eeeccCCCCCceeEEecCCCCeEEEcCCCce
Confidence            456778774   55666666666        666666665553      3344568899999999999999999999999


Q ss_pred             EEEEEEeC
Q 024868           87 CKLFEVYG   94 (261)
Q Consensus        87 i~i~~~~~   94 (261)
                      +.+|...-
T Consensus       125 v~lwr~d~  132 (1416)
T KOG3617|consen  125 VHLWRYDV  132 (1416)
T ss_pred             eEEEEeee
Confidence            99998873

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.41  E-value=9.9e-06  Score=65.36  Aligned_cols=170  Identities=12%  Similarity=0.110  Sum_probs=89.8

Q ss_pred             eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  137 (261)
                      .+....-.+..+.++|+|+++++ ..+|...++.....+.            ...+......|.+.++ +|+-...++|.
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~------------k~~G~g~~~vw~~~n~-yAv~~~~~~I~   92 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN------------KAFGSGLSFVWSSRNR-YAVLESSSTIK   92 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE------------EEEEE-SEEEE-TSSE-EEEE-TTS-EE
T ss_pred             cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc------------cccCceeEEEEecCcc-EEEEECCCeEE
Confidence            34444556889999999999888 4677788887322221            0123446688998665 55555688899


Q ss_pred             EEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~  217 (261)
                      ++.--+.+....+. ....+..+-.   |.+|...+.+ .|.+||..+++.++++...   +|..+.|+++|++     +
T Consensus        93 I~kn~~~~~~k~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~-----v  159 (443)
T PF04053_consen   93 IYKNFKNEVVKSIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGEL-----V  159 (443)
T ss_dssp             EEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSE-----E
T ss_pred             EEEcCccccceEEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCE-----E
Confidence            96322222111121 1122333422   8878777654 8999999999999988732   3899999999998     3


Q ss_pred             EeeCCCcEEEEEECCCC-----------eEEeeeeccCcCeeEEEEeeC
Q 024868          218 VQRGDKALLAVYDISTW-----------NKIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~-----------~~~~~~~~~~~~v~~~~~s~d  255 (261)
                      +..+.+ .+.+++....           ..+.........|.+..|..|
T Consensus       160 al~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  160 ALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             EEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             EEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence            444443 5777765432           022223322456777777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.40  E-value=0.0001  Score=61.94  Aligned_cols=153  Identities=13%  Similarity=0.109  Sum_probs=87.6

Q ss_pred             CCceEEEECCCCCeEEEEe------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC----
Q 024868           64 GDPMTIAVNPSGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----  133 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  133 (261)
                      ..+...+++|+|+.++...      .|..-.+|-...+.....+       .. ........|+|||+.|++....    
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t~-g~~~t~PsWspDG~~lw~v~dg~~~~  421 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------LE-GHSLTRPSWSLDADAVWVVVDGNTVV  421 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------ec-CCCCCCceECCCCCceEEEecCcceE
Confidence            4678999999999987765      2443444544322221111       11 1236778999998877776422    


Q ss_pred             --------CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEE---EEccCCcE-E---EEEeecCCC
Q 024868          134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI---WKTEDGVA-W---TFLTRNSDE  198 (261)
Q Consensus       134 --------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~~~~~~~  198 (261)
                              +.+.+.+++.++...   ...+.|..+.|||||..++... +++|++   -....|+. +   ..+......
T Consensus       422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~  497 (591)
T PRK13616        422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD  497 (591)
T ss_pred             EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence                    233333443333211   2345799999999999888765 477776   44344541 1   112222232


Q ss_pred             ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       199 ~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      .+.++.|.+++.. +   +...+.+..++..++.
T Consensus       498 ~~~~l~W~~~~~L-~---V~~~~~~~~v~~v~vD  527 (591)
T PRK13616        498 TAVSLDWRTGDSL-V---VGRSDPEHPVWYVNLD  527 (591)
T ss_pred             ccccceEecCCEE-E---EEecCCCCceEEEecC
Confidence            3578999999985 2   2233344445555555

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.38  E-value=6.3e-05  Score=62.25  Aligned_cols=132  Identities=9%  Similarity=0.082  Sum_probs=84.8

Q ss_pred             EEeeCCcEEEEec-cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-----------------------
Q 024868          119 SFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-----------------------  174 (261)
Q Consensus       119 ~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------------------  174 (261)
                      -++|||+.+...+ ..+.+.+.|..+.+...++.-.. ....++++|+|+++++.+.                       
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            3455666553332 34567778887776655544322 4466788888888877651                       


Q ss_pred             -----------------CCcEEEEEccC-----CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          175 -----------------DGSARIWKTED-----GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       175 -----------------d~~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                                       ++.|.+.|.++     .+.+..+...  ...+.+.++|||+++    .+++..+.++.++|+.
T Consensus       278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkyl----yVanklS~tVSVIDv~  351 (635)
T PRK02888        278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYF----IANGKLSPTVTVIDVR  351 (635)
T ss_pred             hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEE----EEeCCCCCcEEEEECh
Confidence                             24477777776     3444444433  247899999999984    4677789999999998


Q ss_pred             CCeE------------EeeeeccCcCeeEEEEeeCCCE
Q 024868          233 TWNK------------IGHKRLLRKPASVLSISLDGKY  258 (261)
Q Consensus       233 ~~~~------------~~~~~~~~~~v~~~~~s~dg~~  258 (261)
                      +.+.            ..+... +......+|+++|+.
T Consensus       352 k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~a  388 (635)
T PRK02888        352 KLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNA  388 (635)
T ss_pred             hhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCE
Confidence            7553            222222 334456788888763

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2.9e-06  Score=68.60  Aligned_cols=93  Identities=17%  Similarity=0.178  Sum_probs=76.1

Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCcee-EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEE
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~  191 (261)
                      ..+.-+.|+|.-.+||.+..+|.+.+..+. .+.++.+..+...+. +++|.|||+.||.|-.||+|++.|..++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            457789999999999999999999999887 667777776666666 999999999999999999999999999887776


Q ss_pred             EeecCCCceEEEEEe
Q 024868          192 LTRNSDEKIELCRFS  206 (261)
Q Consensus       192 ~~~~~~~~v~~~~~~  206 (261)
                      .......+|..+-|+
T Consensus       100 ~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  100 FLFSVETDISKGIWD  114 (665)
T ss_pred             cccccccchheeecc
Confidence            332233346777775

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=5.1e-05  Score=59.32  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=100.2

Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC------ceEE--------
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS------LRII--------  147 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~------~~~~--------  147 (261)
                      -.++.+.++|-....++...     ..--|..+|..+.++|-+..+++....|.|.-|....      .+..        
T Consensus       119 ~~sg~i~VvD~~~d~~q~~~-----fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd  193 (558)
T KOG0882|consen  119 FKSGKIFVVDGFGDFCQDGY-----FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD  193 (558)
T ss_pred             ccCCCcEEECCcCCcCccce-----ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccch
Confidence            34688999998766542221     1112568999999999999999998899999998752      1111        


Q ss_pred             -eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee--------------------------------
Q 024868          148 -LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--------------------------------  194 (261)
Q Consensus       148 -~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------------------------  194 (261)
                       ..+........++.|+|+|..+.+-+.|..|+++++++|+.++.+..                                
T Consensus       194 Ly~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek  273 (558)
T KOG0882|consen  194 LYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEK  273 (558)
T ss_pred             hhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhh
Confidence             11223344578999999999999999999999999998876554421                                


Q ss_pred             cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (261)
Q Consensus       195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  238 (261)
                      +....-..+.|...|+++     +-+.-=| |++.++.+++..+
T Consensus       274 ~~~~~~~~~~fdes~~fl-----ly~t~~g-ikvin~~tn~v~r  311 (558)
T KOG0882|consen  274 HGSTVGTNAVFDESGNFL-----LYGTILG-IKVINLDTNTVVR  311 (558)
T ss_pred             hcCcccceeEEcCCCCEE-----Eeeccee-EEEEEeecCeEEE
Confidence            111123456788888872     3333333 7888888777653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.28  E-value=0.00065  Score=49.76  Aligned_cols=140  Identities=17%  Similarity=0.173  Sum_probs=92.1

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~   98 (261)
                      ..+++.|+..+        .+...|+.++++..+...       ..++.+-+.- -|++++.|...|.+++.+.+++...
T Consensus        23 kT~v~igSHs~--------~~~avd~~sG~~~We~il-------g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~   86 (354)
T KOG4649|consen   23 KTLVVIGSHSG--------IVIAVDPQSGNLIWEAIL-------GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQI   86 (354)
T ss_pred             ceEEEEecCCc--------eEEEecCCCCcEEeehhh-------CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhe
Confidence            56788888888        888999998886332221       1223322221 4778999999999999999998653


Q ss_pred             cceeeeeCCCCCCCCCe-EEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCc
Q 024868           99 INLLAKKMPPLQDAGPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS  177 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  177 (261)
                      ......        +.| ......+++..|..++.|++.+..|.++...+.+.+...+-..+.+..|....|+.+...|.
T Consensus        87 w~f~~~--------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~  158 (354)
T KOG4649|consen   87 WNFVIL--------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA  158 (354)
T ss_pred             eeeeeh--------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence            332211        112 22445678999999999999999999998888776555544556666773333444444454


Q ss_pred             EEEEE
Q 024868          178 ARIWK  182 (261)
Q Consensus       178 i~iwd  182 (261)
                      +.--.
T Consensus       159 vlavt  163 (354)
T KOG4649|consen  159 VLAVT  163 (354)
T ss_pred             EEEEc
Confidence            43333

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.26  E-value=9.8e-05  Score=63.23  Aligned_cols=135  Identities=13%  Similarity=0.200  Sum_probs=89.5

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCC-ceEEEECC-----CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNP-----SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  111 (261)
                      .++..|.+.+++      ...+..|... |..++-..     +...-+.|-.+..+..||.+-..  .++.......+..
T Consensus       505 ~ly~mDLe~GKV------V~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  505 KLYKMDLERGKV------VEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVDSQSKQYSS  576 (794)
T ss_pred             ceEEEecCCCcE------EEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cceeecccccccc
Confidence            788999988886      5566666543 44443221     12234556677789999998644  1222222333444


Q ss_pred             CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT  183 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~  183 (261)
                      .....|++-+.+| +||+|+.+|.|++||- .++.... +++...+|.+|..+.||+++++.+. ..+.+++.
T Consensus       577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             CCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            5667788777777 7889999999999993 4443333 3344569999999999999887764 56777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.0001  Score=62.07  Aligned_cols=177  Identities=14%  Similarity=0.092  Sum_probs=107.9

Q ss_pred             EEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccC
Q 024868           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS  143 (261)
Q Consensus        69 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~  143 (261)
                      -+|++.+..++.|+.+|.|.+++-.-...      .......+ +.+..+....+..+|++.+.|+     .+++|+++.
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~------~~fqa~~~-siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSSFQLI------RGFQAYEQ-SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecccceee------ehheecch-hhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            34678888999999999888876543220      00111111 1233333233335666655543     489999864


Q ss_pred             ce------EE--eeccc-----cCCceeEEEEcCCCCEEEEecCCCcEEEEEcc---CCcEEEEEeecCCCceEEEEEec
Q 024868          144 LR------II--LDEPK-----AHKSVLDMDFSLDSEFLATTSTDGSARIWKTE---DGVAWTFLTRNSDEKIELCRFSK  207 (261)
Q Consensus       144 ~~------~~--~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~p  207 (261)
                      .+      ..  .+...     ...++.+++.+.+-+.+|+|-.+|.|..+.-+   .......+......+|+++++..
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence            31      11  12222     23468899999999999999999999988643   11112233333455899999999


Q ss_pred             CCCcceEEEEEeeCCCcEEEEEECCCCeE-EeeeeccCcCeeEEEEeeCCC
Q 024868          208 DGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~dg~  257 (261)
                      +++.. ++ +++   ...|.+|.+....+ ......++.++.+.++++...
T Consensus       182 d~~s~-lF-v~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~  227 (933)
T KOG2114|consen  182 DGKSV-LF-VAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY  227 (933)
T ss_pred             CCcee-EE-EEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCc
Confidence            99873 11 222   34699999984442 334566777888888876544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.25  E-value=0.00029  Score=56.81  Aligned_cols=137  Identities=11%  Similarity=0.051  Sum_probs=86.6

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  154 (261)
                      +..++.++.+|.+..+|..+++...+..      +.   ....+  ..++..++.++.+|.+..+|..+++.+.......
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~------~~---~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~  324 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKRE------YG---SVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL  324 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeec------CC---CccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccC
Confidence            4567777788999999998876533211      11   11112  2245567777789999999999998776543222


Q ss_pred             C-ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          155 K-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       155 ~-~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      . ...+...  .+..++.++.+|.++.+|..+|+.+...............+ .+++      ++.++.||.|+.++.
T Consensus       325 ~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~------l~v~t~~G~l~~~~~  393 (394)
T PRK11138        325 HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDK------LLIQARDGTVYAITR  393 (394)
T ss_pred             CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCE------EEEEeCCceEEEEeC
Confidence            1 2222222  25567888899999999999999887775432221222222 2444      466788888888764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.25  E-value=0.0014  Score=52.44  Aligned_cols=201  Identities=14%  Similarity=0.155  Sum_probs=103.0

Q ss_pred             eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeee-CCCCCCCCCeEEEEEee-----CC---cEE
Q 024868           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSV-----DG---SRF  127 (261)
Q Consensus        57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-----~~---~~l  127 (261)
                      ..+....++|++++.|. =-+++.|.++|.+.|.|++............ .........++++.|+.     |+   -.+
T Consensus        80 ~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             hheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            34555578999999974 4489999999999999997765422211111 01112245788888874     22   367


Q ss_pred             EEeccCCeEEEEEccC---ceE----EeeccccCCceeEEE-EcCC-C--------------------CEEEEecCCCcE
Q 024868          128 AAGGVDGHLRIMHWPS---LRI----ILDEPKAHKSVLDMD-FSLD-S--------------------EFLATTSTDGSA  178 (261)
Q Consensus       128 ~~~~~d~~i~~~d~~~---~~~----~~~~~~~~~~v~~~~-~s~~-~--------------------~~l~~~~~d~~i  178 (261)
                      ++|...|.+.+|.+..   +.-    ......+.+++..+. ++.+ |                    .+++.+ .+..+
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~i  237 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDI  237 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccce
Confidence            8888899999998752   111    111123344554444 3221 1                    134444 46789


Q ss_pred             EEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC----cCeeEEEEee
Q 024868          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----KPASVLSISL  254 (261)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~  254 (261)
                      +++...+.+...... ........+.+-+-....--.+++.-..+|.+++|.+..-+.+.......    ..+....+++
T Consensus       238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence            999998887766554 22222444555321100011124555678999999999988887666532    3455677888


Q ss_pred             CCCEEe
Q 024868          255 DGKYLA  260 (261)
Q Consensus       255 dg~~la  260 (261)
                      +|..++
T Consensus       317 ~Gdi~~  322 (395)
T PF08596_consen  317 NGDIFY  322 (395)
T ss_dssp             TS-EEE
T ss_pred             CCCEEE
Confidence            888664

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=5.6e-06  Score=63.50  Aligned_cols=94  Identities=16%  Similarity=0.165  Sum_probs=74.3

Q ss_pred             EEEEEccCceEEeeccccCCceeEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE
Q 024868          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  214 (261)
                      +++.+-.+.+.......+...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+  ..+++++|.-|....  
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~--  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHV--  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcce--
Confidence            55555555554443444455799999999877 7788999999999999999888888766  359999999998763  


Q ss_pred             EEEEeeCCCcEEEEEECCCCe
Q 024868          215 FCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~~~~~  235 (261)
                        +..|-.+|.|.+||++..+
T Consensus       251 --IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  251 --IYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             --eEEeccCceEEEEEccCCC
Confidence              5788899999999998654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.22  E-value=3.4e-07  Score=74.02  Aligned_cols=180  Identities=13%  Similarity=0.060  Sum_probs=114.8

Q ss_pred             CCCceEEEECCC--CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEec----cCCe
Q 024868           63 EGDPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGG----VDGH  135 (261)
Q Consensus        63 ~~~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~d~~  135 (261)
                      ...+.|++++-+  ...+++|..+|.|.+-.++.....     .......+..++++++|++ |...||+|-    .|..
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence            345777777553  346788889999999888765431     0112223457889999999 667777774    4567


Q ss_pred             EEEEEccCce----EEeeccc-cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE-EEEEeecCCCceEEEEEec-C
Q 024868          136 LRIMHWPSLR----IILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSK-D  208 (261)
Q Consensus       136 i~~~d~~~~~----~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p-~  208 (261)
                      +.|||+.++-    ....+.. ......+++|-.+.+.+.+|.....++++|++.... ...+.  .. .+..+..+| .
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk-~vqG~tVdp~~  207 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TK-YVQGITVDPFS  207 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--hh-hcccceecCCC
Confidence            9999998761    1112222 122456888988889999999999999999984322 11221  12 366677788 6


Q ss_pred             CCcceEEEEEeeCCCcEEEEEE-CCCCeE-EeeeeccC----cCeeEEEEeeCC
Q 024868          209 GTKPFLFCTVQRGDKALLAVYD-ISTWNK-IGHKRLLR----KPASVLSISLDG  256 (261)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~~~d-~~~~~~-~~~~~~~~----~~v~~~~~s~dg  256 (261)
                      +.+      +....||.|.+|| .++-+. +..+...+    ..+..++|.|..
T Consensus       208 ~nY------~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  208 PNY------FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             CCc------eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence            676      4455599999999 433332 21111111    247788888854

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.21  E-value=0.0013  Score=53.24  Aligned_cols=199  Identities=12%  Similarity=0.091  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCC-CCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD-AGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~v~  116 (261)
                      .|..|+..+..+     ....+..  +.+.++.|+.+.+ |++-..||.+++||+.+.. ... .........- ...+.
T Consensus        62 ~I~iys~sG~ll-----~~i~w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fs-l~~~i~~~~v~e~~i~  131 (410)
T PF04841_consen   62 SIQIYSSSGKLL-----SSIPWDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFS-LGEEIEEEKVLECRIF  131 (410)
T ss_pred             EEEEECCCCCEe-----EEEEECC--CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eec-hhhhccccCccccccc
Confidence            466677666543     2233443  7899999988655 5566799999999986543 111 1111111000 11122


Q ss_pred             EEEEeeCCcEEEEeccCCeEEEEEccCceEE-eeccccCC---------ceeE-EEEcCCCCEEEEecCCCcEEEEEccC
Q 024868          117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHK---------SVLD-MDFSLDSEFLATTSTDGSARIWKTED  185 (261)
Q Consensus       117 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~---------~v~~-~~~s~~~~~l~~~~~d~~i~iwd~~~  185 (261)
                      ...+..+|  ++.-..++.+.+..--..... ........         .... ..++.+....+....++.+.+.+-..
T Consensus       132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS  209 (410)
T ss_pred             ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence            22333345  333334555544432221111 11110000         0000 22333444444444445555443222


Q ss_pred             CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-CcCeeEEEEeeCCCE
Q 024868          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKY  258 (261)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~dg~~  258 (261)
                      .+.   +.  ..+++..++.||+|++     ++.-..+|.+.+....-.+.+..+... ......+.|.-+...
T Consensus       210 ~~~---i~--~~~~i~~iavSpng~~-----iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav  273 (410)
T PF04841_consen  210 FKQ---ID--SDGPIIKIAVSPNGKF-----IALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV  273 (410)
T ss_pred             ccc---cc--CCCCeEEEEECCCCCE-----EEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence            111   11  2246999999999998     344456788888886655554444433 345567777766543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1e-05  Score=65.57  Aligned_cols=92  Identities=15%  Similarity=0.080  Sum_probs=71.3

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC-CCCCe-EEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQ-KCLSFSVDGSRFAAGGVDGHLRIMHW  141 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v-~~~~~s~~~~~l~~~~~d~~i~~~d~  141 (261)
                      -.+.-+.|+|.-..+|.+..+|.+.+..+.-.+.         -.++ +...+ .+++|.|||+.|++|-.||+|++.|+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRl---------wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv   91 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRL---------WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV   91 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEecccee---------EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence            4577899999999999999999999998873331         1222 23344 49999999999999999999999999


Q ss_pred             cCceEEeeccc-cCCceeEEEEcC
Q 024868          142 PSLRIILDEPK-AHKSVLDMDFSL  164 (261)
Q Consensus       142 ~~~~~~~~~~~-~~~~v~~~~~s~  164 (261)
                      .++..+..... ....|.++-|++
T Consensus        92 e~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   92 EKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             cCCCceeccccccccchheeeccc
Confidence            99887765432 234688888874

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.17  E-value=6.3e-05  Score=63.17  Aligned_cols=135  Identities=14%  Similarity=0.090  Sum_probs=79.6

Q ss_pred             CCeEEEEEeeCCcEEEEec------cCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC---------
Q 024868          113 GPQKCLSFSVDGSRFAAGG------VDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---------  175 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~------~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------  175 (261)
                      ..+.+.+++|||+.++...      .|.  .|.+++.. +.. ..+... .......|+|||+.+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678899999999887765      243  45555542 222 222222 247889999998877776532         


Q ss_pred             ---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE---EECCCCeE-E---eeee-ccC
Q 024868          176 ---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV---YDISTWNK-I---GHKR-LLR  244 (261)
Q Consensus       176 ---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~---~d~~~~~~-~---~~~~-~~~  244 (261)
                         +.+.+.++..++...    .....|..+.|||||+++.+  ++    +++|++   -....|+. +   ..+. ...
T Consensus       427 ~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~--i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~  496 (591)
T PRK13616        427 PATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAM--II----GGKVYLAVVEQTEDGQYALTNPREVGPGLG  496 (591)
T ss_pred             CCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEE--EE----CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence               233333444333322    12335999999999998432  11    367777   44445541 1   0111 222


Q ss_pred             cCeeEEEEeeCCCEEe
Q 024868          245 KPASVLSISLDGKYLA  260 (261)
Q Consensus       245 ~~v~~~~~s~dg~~la  260 (261)
                      ..+.++.|.++++.++
T Consensus       497 ~~~~~l~W~~~~~L~V  512 (591)
T PRK13616        497 DTAVSLDWRTGDSLVV  512 (591)
T ss_pred             CccccceEecCCEEEE
Confidence            3468899999998653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.15  E-value=0.003  Score=52.50  Aligned_cols=163  Identities=11%  Similarity=0.113  Sum_probs=93.9

Q ss_pred             EEECCCCCeEEEEecCC------------------cEEEEEEeCCccccceeeeeCCC--CCCCC-Ce-EEEEEeeCCc-
Q 024868           69 IAVNPSGDDFVCSTTNG------------------GCKLFEVYGGATDINLLAKKMPP--LQDAG-PQ-KCLSFSVDGS-  125 (261)
Q Consensus        69 ~~~~~~~~~l~~~~~dg------------------~i~i~~~~~~~~~~~~~~~~~~~--~~~~~-~v-~~~~~s~~~~-  125 (261)
                      .++.+.+..++.++.++                  .+.-+|..+++...+........  ..... ++ ..+. .-++. 
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~  300 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKP  300 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCe
Confidence            44555566777776554                  68888988887644432110000  00111 11 1110 11343 


Q ss_pred             --EEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe------------------cCCCcEEEEEccC
Q 024868          126 --RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT------------------STDGSARIWKTED  185 (261)
Q Consensus       126 --~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~------------------~~d~~i~iwd~~~  185 (261)
                        .++.++.+|.+..+|.++++.+.......   ..++.+|  ..++.+                  ..+|.+.-.|+.+
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t  375 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT  375 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence              57778889999999999999877653221   1233344  223322                  2357888999999


Q ss_pred             CcEEEEEeecCC-------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          186 GVAWTFLTRNSD-------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       186 ~~~~~~~~~~~~-------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      |+.+.+......       .+...-.....+..     ++.++.||.++.+|.++|+.+.....
T Consensus       376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~-----v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         376 GKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL-----VFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CcEeeEeeCCccccccccCCcccCcceEecCCe-----EEEECCCCeEEEEECCCCceeeEEEC
Confidence            998777654310       11111011123444     46777899999999999998876654

The alignment model contains an 8-bladed beta-propeller.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.14  E-value=4.8e-05  Score=62.63  Aligned_cols=117  Identities=10%  Similarity=0.135  Sum_probs=87.4

Q ss_pred             CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc-cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE
Q 024868          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~  190 (261)
                      ...+.--+++..+++++.|+..|.+++|.-..++....... .++.+.....|++..++|+|+..|.|.++-++.+.+..
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            34555556777889999999999999999666554322221 34456777889999999999999999999987644322


Q ss_pred             E---Eeec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          191 F---LTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       191 ~---~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      .   -..+  +...|++++|++++..     +++|...|+|..-.+.+
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k-----~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMK-----LYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccE-----EeecCCCceEEEEEech
Confidence            1   1112  2446999999999999     68999999999888876

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.14  E-value=0.00019  Score=58.07  Aligned_cols=128  Identities=19%  Similarity=0.173  Sum_probs=72.2

Q ss_pred             CeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (261)
                      ....+.++|+|++++++ .+|.-.++.........     .+.-....|.+.++ +|+-..++.|.|+.--+.+....+.
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~  106 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK  106 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT----
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc
Confidence            46789999999999996 68888888743333211     23456788998655 5555557889997432222223343


Q ss_pred             ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ...  .+..+ |.  |..     +...+. +.|.+||..+++.+..+...  +|..+.|+++|+++|.
T Consensus       107 ~~~--~~~~I-f~--G~L-----L~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val  161 (443)
T PF04053_consen  107 LPF--SVEKI-FG--GNL-----LGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVAL  161 (443)
T ss_dssp             -SS---EEEE-E---SSS-----EEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEE
T ss_pred             CCc--ccceE-Ec--CcE-----EEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEE
Confidence            222  24444 32  776     343433 37999999999988766543  4899999999999873

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.11  E-value=0.0012  Score=52.80  Aligned_cols=189  Identities=14%  Similarity=0.171  Sum_probs=103.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC------CCCCceEEEECC----
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------SEGDPMTIAVNP----   73 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~----   73 (261)
                      +++|++++.+.    --++|+|..+|        .+.++|..+..+..    ...+..      ....++++.|+.    
T Consensus        86 ~g~vtal~~S~----iGFvaigy~~G--------~l~viD~RGPavI~----~~~i~~~~~~~~~~~~vt~ieF~vm~~~  149 (395)
T PF08596_consen   86 QGPVTALKNSD----IGFVAIGYESG--------SLVVIDLRGPAVIY----NENIRESFLSKSSSSYVTSIEFSVMTLG  149 (395)
T ss_dssp             S-SEEEEEE-B----TSEEEEEETTS--------EEEEEETTTTEEEE----EEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred             CCcEeEEecCC----CcEEEEEecCC--------cEEEEECCCCeEEe----eccccccccccccccCeeEEEEEEEecC
Confidence            78999999975    45899999999        99999998776522    222222      234577888852    


Q ss_pred             -CC---CeEEEEecCCcEEEEEEeCCc-c--ccceeeeeCCCCCCCCCeEEEE-EeeC-C-------------------c
Q 024868           74 -SG---DDFVCSTTNGGCKLFEVYGGA-T--DINLLAKKMPPLQDAGPQKCLS-FSVD-G-------------------S  125 (261)
Q Consensus        74 -~~---~~l~~~~~dg~i~i~~~~~~~-~--~~~~~~~~~~~~~~~~~v~~~~-~s~~-~-------------------~  125 (261)
                       |+   -.|++|...|.+.+|.+.... .  .......   ...+.+++..+. ++.+ |                   .
T Consensus       150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~---~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~  226 (395)
T PF08596_consen  150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA---TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP  226 (395)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE---E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----
T ss_pred             CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec---cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC
Confidence             33   368889999999999986321 1  1111111   123344554443 3222 1                   1


Q ss_pred             EEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc-----CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC---
Q 024868          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS-----LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD---  197 (261)
Q Consensus       126 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---  197 (261)
                      .+++...+..++++...+.+...+.....-....+.+-     ..+..|++-..+|.+++|.+..-+.+........   
T Consensus       227 g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~  306 (395)
T PF08596_consen  227 GYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS  306 (395)
T ss_dssp             EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred             cEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence            13333357789999988877766555322233344442     3566788888999999999998888877765321   


Q ss_pred             CceEEEEEecCCCc
Q 024868          198 EKIELCRFSKDGTK  211 (261)
Q Consensus       198 ~~v~~~~~~p~~~~  211 (261)
                      ..+....++++|..
T Consensus       307 ~~~~~ssis~~Gdi  320 (395)
T PF08596_consen  307 RRLSSSSISRNGDI  320 (395)
T ss_dssp             HHHTT-EE-TTS-E
T ss_pred             ccccccEECCCCCE
Confidence            12445677899986

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=2.6e-05  Score=65.71  Aligned_cols=111  Identities=16%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             CceEEEECCCCCeEEEEec----CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868           65 DPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d  140 (261)
                      ..+-.+|+|...++++++.    .|.|.||- +++++        .....-.-.+.+++|+|..-.|+.|-.-|.+.+|.
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEP--------qr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~   87 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEP--------QRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQK   87 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCC--------CcccccceehhhhccChHHHHHhhccccceeEEEe
Confidence            3345679999998887764    47888883 34443        11111223457799999888888888889999999


Q ss_pred             ccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~  184 (261)
                      ..+.+.-.....|..+|..+.|||+|..++++..-|.+.+|...
T Consensus        88 ~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   88 TNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            87776654555667799999999999999999999999999876

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.03  E-value=0.0041  Score=49.45  Aligned_cols=213  Identities=18%  Similarity=0.171  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCceecCCeEEeeecC---CC----CCceEEEECCCCCeEEEEec------CCcEEEEEEeCCccccceeee
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDE---SE----GDPMTIAVNPSGDDFVCSTT------NGGCKLFEVYGGATDINLLAK  104 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~  104 (261)
                      +|+++|..+...  .|.....+..   +.    .....+..-|+|+.++++-.      -|-+.++|-++...... .  
T Consensus        99 rIyviD~~~dPr--~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~-W--  173 (461)
T PF05694_consen   99 RIYVIDTKTDPR--KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGR-W--  173 (461)
T ss_dssp             -EEEEE--S-TT--S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE----
T ss_pred             cEEEEECCCCCC--CCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccce-e--
Confidence            899999875432  2333333322   11    23445556689988887532      24577777665443111 1  


Q ss_pred             eCCCCCCCCCeEEEEEeeCCcEEEEec--------------------cCCeEEEEEccCceEEeeccccCC--ceeEEEE
Q 024868          105 KMPPLQDAGPQKCLSFSVDGSRFAAGG--------------------VDGHLRIMHWPSLRIILDEPKAHK--SVLDMDF  162 (261)
Q Consensus       105 ~~~~~~~~~~v~~~~~s~~~~~l~~~~--------------------~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~  162 (261)
                       .........-+.+-|.|..+.+++..                    ...++.+||+.+.+.++.+.-...  ....+.|
T Consensus       174 -e~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRf  252 (461)
T PF05694_consen  174 -EKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRF  252 (461)
T ss_dssp             --SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE
T ss_pred             -ccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEe
Confidence             11111123346777888777777653                    135799999999988776654433  4667887


Q ss_pred             cCC--CCEEEE-ecCCCcEEEEEc-cCCcE----EEEEeec---------C-------CCceEEEEEecCCCcceEEEEE
Q 024868          163 SLD--SEFLAT-TSTDGSARIWKT-EDGVA----WTFLTRN---------S-------DEKIELCRFSKDGTKPFLFCTV  218 (261)
Q Consensus       163 s~~--~~~l~~-~~~d~~i~iwd~-~~~~~----~~~~~~~---------~-------~~~v~~~~~~p~~~~~~~~~~~  218 (261)
                      ..+  ..+=++ +....+|..|-- ..++-    +..+...         .       ..-++.+..|.|.+++|    +
T Consensus       253 lH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY----v  328 (461)
T PF05694_consen  253 LHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY----V  328 (461)
T ss_dssp             -SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE----E
T ss_pred             cCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE----E
Confidence            554  333222 223445554443 34431    1122110         0       12378899999999864    5


Q ss_pred             eeCCCcEEEEEECCCCe---EEeeeecc----------------CcCeeEEEEeeCCCEEe
Q 024868          219 QRGDKALLAVYDISTWN---KIGHKRLL----------------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       219 ~~~~d~~i~~~d~~~~~---~~~~~~~~----------------~~~v~~~~~s~dg~~la  260 (261)
                      ++=.+|.|+.||+....   +..+....                .+...-++.|-||+.|.
T Consensus       329 s~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY  389 (461)
T PF05694_consen  329 SNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY  389 (461)
T ss_dssp             EETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred             EcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence            56678999999997543   33322211                12346788999999875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.02  E-value=0.0022  Score=50.23  Aligned_cols=178  Identities=13%  Similarity=0.217  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCce---EEEECCC----CCeEEEEec---------C-CcEEEEEEeCC-cccc
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPM---TIAVNPS----GDDFVCSTT---------N-GGCKLFEVYGG-ATDI   99 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~----~~~l~~~~~---------d-g~i~i~~~~~~-~~~~   99 (261)
                      .+..+|+.+...    .....+... ..+.   .+.+..+    ..++++|..         . |.+.++++... ....
T Consensus         3 ~i~l~d~~~~~~----~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~   77 (321)
T PF03178_consen    3 SIRLVDPTTFEV----LDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNF   77 (321)
T ss_dssp             EEEEEETTTSSE----EEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred             EEEEEeCCCCeE----EEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccce
Confidence            456667765543    223444432 2233   3444432    456776643         2 88999999884 1101


Q ss_pred             ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC--ceeEEEEcCCCCEEEEecCCCc
Q 024868          100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVLDMDFSLDSEFLATTSTDGS  177 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~  177 (261)
                      ++.  ........++|++++-- +++ |+++ ..+.|.+|++...+.+......+.  .+.++...  +++++.|.....
T Consensus        78 ~l~--~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~s  150 (321)
T PF03178_consen   78 KLK--LIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKS  150 (321)
T ss_dssp             EEE--EEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSS
T ss_pred             EEE--EEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccC
Confidence            111  11112235788888765 454 5444 468899999987772222222222  45555444  668999988888


Q ss_pred             EEEEEccC-CcEEEEEe-ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          178 ARIWKTED-GVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       178 i~iwd~~~-~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      +.++..+. ++.+..+. ......+.++.|-++++.     ++.+..+|.+.++...
T Consensus       151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~-----~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDT-----IIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE-----EEEEETTSEEEEEEE-
T ss_pred             EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcE-----EEEEcCCCeEEEEEEC
Confidence            88886553 33233332 233445888999877764     5788889999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.01  E-value=0.00095  Score=54.28  Aligned_cols=116  Identities=19%  Similarity=0.162  Sum_probs=73.1

Q ss_pred             EEEEEeeCCcEEEEec-cCC----eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-----------CcEE
Q 024868          116 KCLSFSVDGSRFAAGG-VDG----HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----------GSAR  179 (261)
Q Consensus       116 ~~~~~s~~~~~l~~~~-~d~----~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~  179 (261)
                      ..+.+||||+++|.+- ..|    .++++|+++++.+....... ....+.|.+|++.|+....+           ..|+
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            4678899999988762 333    59999999997754332211 12349999998876654432           2377


Q ss_pred             EEEccCCcEE--EEEeecCCCc-eEEEEEecCCCcceEEEEEeeCCC-cEEEEEECCCC
Q 024868          180 IWKTEDGVAW--TFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTW  234 (261)
Q Consensus       180 iwd~~~~~~~--~~~~~~~~~~-v~~~~~~p~~~~~~~~~~~~~~~d-~~i~~~d~~~~  234 (261)
                      .|.+.+....  ..+....... ...+..++|++++++  ....+.+ ..+++.|+..+
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i--~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI--SSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE--EEESSSSEEEEEEEECCCT
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE--EEEccccCCeEEEEecccc
Confidence            8887765432  3344333322 567889999998443  2334444 78999999875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.98  E-value=0.0031  Score=52.37  Aligned_cols=159  Identities=13%  Similarity=0.116  Sum_probs=91.7

Q ss_pred             CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCe-EEEEEeeCCcEEEEec---------cCCeEEEEEccCce
Q 024868           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ-KCLSFSVDGSRFAAGG---------VDGHLRIMHWPSLR  145 (261)
Q Consensus        76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~---------~d~~i~~~d~~~~~  145 (261)
                      ..++.++.++.|+-+|.++++...+.......  .....+ ....+.  +..++.++         .++.+.-+|..+++
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~  186 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGK  186 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence            57777888999999999988764432211000  000000 111111  23444443         36789999999999


Q ss_pred             EEeeccccCC--------------------ce-eEEEEcCCCCEEEEecCCC------------------cEEEEEccCC
Q 024868          146 IILDEPKAHK--------------------SV-LDMDFSLDSEFLATTSTDG------------------SARIWKTEDG  186 (261)
Q Consensus       146 ~~~~~~~~~~--------------------~v-~~~~~s~~~~~l~~~~~d~------------------~i~iwd~~~~  186 (261)
                      .+........                    .+ ...+..+.+..++.++.++                  .+.-+|.++|
T Consensus       187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG  266 (488)
T cd00216         187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG  266 (488)
T ss_pred             eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence            8776543211                    01 1244455566777776554                  7999999999


Q ss_pred             cEEEEEeecCCC-----ceEEEEEe----cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          187 VAWTFLTRNSDE-----KIELCRFS----KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       187 ~~~~~~~~~~~~-----~v~~~~~~----p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      +....+......     ......+.    -+|...  ..++.++.+|.++..|.++|+.+-..
T Consensus       267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~--~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV--PAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             CEEEEeeCCCCCCcccccCCCCeEEeccccCCCee--EEEEEECCCceEEEEECCCCcEeeEe
Confidence            998876532110     00111111    133311  11567788999999999999987544

The alignment model contains an 8-bladed beta-propeller.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.00045  Score=55.47  Aligned_cols=136  Identities=10%  Similarity=0.155  Sum_probs=87.9

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCe-------EEEEecCCcEEEEEEeCCccccceeeeeCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD-------FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  110 (261)
                      .++..|.+.+++      ...+.-|.+ |.-+.+.|+.+.       -+.|-.+..|.-||.+-... ..+...+...+.
T Consensus       357 ~l~klDIE~GKI------VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~kqy~  428 (644)
T KOG2395|consen  357 KLYKLDIERGKI------VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSKQYS  428 (644)
T ss_pred             cceeeeccccee------eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeeccccc
Confidence            678888888776      445555554 777788886542       23455677799999874432 122222223333


Q ss_pred             CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (261)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~  184 (261)
                      ......|.+-..+| +|++|+.+|.|++||- .+... ..+++...+|..+..+.||++|+..+ +..+.+.++.
T Consensus       429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            34445555555455 7889999999999995 44433 33455556899999999999888765 4566666653

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.94  E-value=0.0086  Score=52.00  Aligned_cols=240  Identities=14%  Similarity=0.126  Sum_probs=129.1

Q ss_pred             CceeeEEEEEeeCCcce---EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE
Q 024868            4 GGTVTCGSWIKRPENVN---LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (261)
                      .+.|.|+.++|-++..+   ++++|-....+      .+..+.++.......   ....+.-...|.-..+--|..+|.+
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~------~~l~~~pd~~~~~~~---~l~~~~iPRSIl~~~~e~d~~yLlv  600 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDIS------MILTFLPDLILITHE---QLSGEIIPRSILLTTFEGDIHYLLV  600 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceE------EEEEECCCcceeeee---ccCCCccchheeeEEeeccceEEEE
Confidence            56899999999887777   89999887743      555666655432110   0011111234555556567889999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeE-
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD-  159 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~-  159 (261)
                      +..||.+.-|.++.......   ...+..-+..|+.--.|+..++.-+.+..|+-..+|. .+++....-..-. .+.. 
T Consensus       601 algdG~l~~fv~d~~tg~ls---d~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~-~n~kLv~spls~k-ev~~~  675 (1096)
T KOG1897|consen  601 ALGDGALLYFVLDINTGQLS---DRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS-SNGKLVYSPLSLK-EVNHM  675 (1096)
T ss_pred             EcCCceEEEEEEEcccceEc---cccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe-cCCcEEEeccchH-Hhhhh
Confidence            99999998877765432111   1111122345666667777665555555677666665 3455433322211 2222 


Q ss_pred             EEEcCC--CCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCCCcceEEEE----EeeC---CC---cE
Q 024868          160 MDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCT----VQRG---DK---AL  225 (261)
Q Consensus       160 ~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~----~~~~---~d---~~  225 (261)
                      ..|+.+  +..++++. .+.+.+.-++.-+.  ++++.  ....++.+++.+.... |.+..    ..+.   ..   ..
T Consensus       676 c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~-~~v~s~r~e~~~~~~~ee~~~s~  751 (1096)
T KOG1897|consen  676 CPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLT-FGVLSNRIESSAEYYGEEYEVSF  751 (1096)
T ss_pred             cccccccCCceEEEec-CCceEEEEecchhhcceeeec--CCCChhheEecccceE-EEEEecccccchhhcCCcceEEE
Confidence            223322  33455553 46677777664332  23333  3334777888773332 21100    0111   11   25


Q ss_pred             EEEEECCCCeEEeeeeccC----cCeeEEEEeeC-CCEEeC
Q 024868          226 LAVYDISTWNKIGHKRLLR----KPASVLSISLD-GKYLAM  261 (261)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~d-g~~la~  261 (261)
                      ++++|-++.+.+.......    ..+.+..|..| ++++++
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vV  792 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVV  792 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEE
Confidence            7888888777654333222    24555668877 666653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.92  E-value=0.001  Score=50.11  Aligned_cols=142  Identities=18%  Similarity=0.103  Sum_probs=87.3

Q ss_pred             CeEEEEEeeCCcEEEEec---cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEE-ccCCcEE
Q 024868          114 PQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK-TEDGVAW  189 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd-~~~~~~~  189 (261)
                      .+.+.+++++++.+++..   ....++++..  +....... ....+...+|++++...+....+...+++. ..+++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678899999999887765   2334555543  33322222 223788899999988777766666666663 3333322


Q ss_pred             E-EEeecCC-CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC---CC--eE----EeeeeccCcCeeEEEEeeCCCE
Q 024868          190 T-FLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TW--NK----IGHKRLLRKPASVLSISLDGKY  258 (261)
Q Consensus       190 ~-~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~---~~--~~----~~~~~~~~~~v~~~~~s~dg~~  258 (261)
                      . ....... ..|..+.+||||..+.+  +.....++.|.+--+.   .+  ..    +.........+.+++|.+++++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~--v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAV--VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEE--EEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            2 2221211 16999999999998433  4445556788877643   22  11    1111123467889999999987


Q ss_pred             Ee
Q 024868          259 LA  260 (261)
Q Consensus       259 la  260 (261)
                      ++
T Consensus       180 ~V  181 (253)
T PF10647_consen  180 VV  181 (253)
T ss_pred             EE
Confidence            65

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.91  E-value=0.0013  Score=56.62  Aligned_cols=130  Identities=15%  Similarity=0.100  Sum_probs=87.3

Q ss_pred             CCcEEEEe-ccCCeEEEEEccCceEEeeccccCC-ceeEEEEcCC-------CCEEEEecCCCcEEEEEccCCc--EEEE
Q 024868          123 DGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLD-------SEFLATTSTDGSARIWKTEDGV--AWTF  191 (261)
Q Consensus       123 ~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~-------~~~l~~~~~d~~i~iwd~~~~~--~~~~  191 (261)
                      +.++|+.- .....|+-.|+..|+.+..+..+.. +|..+  .|+       ....+.|-.++.+..||.+-..  ++..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS  569 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence            33444443 3457799999999999877766554 34444  443       2345666678899999998532  2211


Q ss_pred             Ee--ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          192 LT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       192 ~~--~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      -.  -.......|++-+.+|.      ++.|+.+|.||+||--..+.-..+.+.+.+|..+..+.||+||+
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G~------iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwil  634 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDGY------IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWIL  634 (794)
T ss_pred             cccccccCCCceEEEecCCce------EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEE
Confidence            10  01222477888888887      48999999999999533222233556789999999999999986

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.88  E-value=0.0013  Score=48.24  Aligned_cols=123  Identities=11%  Similarity=0.008  Sum_probs=87.3

Q ss_pred             CcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868          124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (261)
Q Consensus       124 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  203 (261)
                      ..+++.|+..+.+.-.|..+++..++..-. ..+.+-+.- -|.+++.|...|.+++.+.++|.....+..-..-.++ .
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-A   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-e
Confidence            356778888899999999999887654422 233333222 4778999999999999999999888777654432233 4


Q ss_pred             EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      ...+++..     +..++.|++.+..|.++...+...+..++.-.+.+..|
T Consensus       100 ~~d~~~gl-----Iycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen  100 QCDFDGGL-----IYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             EEcCCCce-----EEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence            46788887     68899999999999998887765554443333344444

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.88  E-value=0.0045  Score=44.87  Aligned_cols=135  Identities=10%  Similarity=-0.013  Sum_probs=80.3

Q ss_pred             CCCeEEEEEeeCCcEEEEeccC---------CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEE-EecCCCcEEEE
Q 024868          112 AGPQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIW  181 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~iw  181 (261)
                      ..+.++-..+|+|++++-.-.|         |.++.|-..  ..+......-.--..++|+.+.+.++ +-+.+-.|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            4567778889999985433222         334444321  11111221122235688988777655 44556677777


Q ss_pred             E--ccCCcE-----EEEEeec---CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEE
Q 024868          182 K--TEDGVA-----WTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS  251 (261)
Q Consensus       182 d--~~~~~~-----~~~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  251 (261)
                      |  +.+|..     +..+...   .....-.++...+|..     .++.-..++|...|..+|+.+.++......+++++
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L-----~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc  260 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNL-----YVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC  260 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcE-----EEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence            7  555532     2222211   1111334556667765     24555667899999999999988888888899998


Q ss_pred             Ee
Q 024868          252 IS  253 (261)
Q Consensus       252 ~s  253 (261)
                      |-
T Consensus       261 Fg  262 (310)
T KOG4499|consen  261 FG  262 (310)
T ss_pred             ec
Confidence            85

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.87  E-value=0.0013  Score=41.80  Aligned_cols=100  Identities=12%  Similarity=0.158  Sum_probs=64.3

Q ss_pred             ceEEEECC---CC-CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868           66 PMTIAVNP---SG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (261)
Q Consensus        66 v~~~~~~~---~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~  141 (261)
                      |+++++..   || +.|++|+.|..|++|+-..-          ...+...+.|..+.-... ..++.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~----------~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI----------VAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE----------EEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            45566543   33 57999999999999986542          222333567777776665 56888889999999974


Q ss_pred             cCceEEeeccccCCceeEEEEcC-C--CC-EEEEecCCCcEE
Q 024868          142 PSLRIILDEPKAHKSVLDMDFSL-D--SE-FLATTSTDGSAR  179 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~v~~~~~s~-~--~~-~l~~~~~d~~i~  179 (261)
                        ....++....+. +.++.+.. +  |. -|++|=.+|.|-
T Consensus        71 --~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 --SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              444455554443 55555433 3  32 577777777653

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.83  E-value=0.0087  Score=46.91  Aligned_cols=194  Identities=14%  Similarity=0.139  Sum_probs=99.0

Q ss_pred             CceeeEEEEEeeCC----cceEEEEecCCCCC--CCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCe
Q 024868            4 GGTVTCGSWIKRPE----NVNLVVLGKSSRAS--SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD   77 (261)
Q Consensus         4 ~~~v~~~~~~~~~~----~~~~~~~g~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (261)
                      ...++|++...-+.    ...++++|..-...  .....-+++.|+...............-....++|++++-- ++ +
T Consensus        23 ~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~  100 (321)
T PF03178_consen   23 NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-R  100 (321)
T ss_dssp             TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-E
T ss_pred             CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-E
Confidence            34556665543221    25678877652211  10110255555554420000001111122346788888876 34 4


Q ss_pred             EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-ceEEeeccc--cC
Q 024868           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPK--AH  154 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~--~~  154 (261)
                      |+++ ..+.|++|++.....   +..  .........+.++..  .+.++++|.....+.++..+. .........  ..
T Consensus       101 lv~~-~g~~l~v~~l~~~~~---l~~--~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~  172 (321)
T PF03178_consen  101 LVVA-VGNKLYVYDLDNSKT---LLK--KAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP  172 (321)
T ss_dssp             EEEE-ETTEEEEEEEETTSS---EEE--EEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-
T ss_pred             EEEe-ecCEEEEEEccCccc---chh--hheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC
Confidence            5554 457799999998771   111  111111224555544  466999998777788775543 222222222  22


Q ss_pred             CceeEEEEcCCCCEEEEecCCCcEEEEEccC-------C--cEEEEEeecCCCceEEE---EEec
Q 024868          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTED-------G--VAWTFLTRNSDEKIELC---RFSK  207 (261)
Q Consensus       155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-------~--~~~~~~~~~~~~~v~~~---~~~p  207 (261)
                      ..+.++.+-++++.++.+..+|.+.++....       +  +.......|.+..|+++   ++.|
T Consensus       173 ~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~  237 (321)
T PF03178_consen  173 RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP  237 (321)
T ss_dssp             BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred             ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence            3588888887767889999999999998762       2  23333444555567777   5555

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.82  E-value=8.2e-05  Score=37.29  Aligned_cols=36  Identities=19%  Similarity=0.434  Sum_probs=31.4

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEE
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE   91 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~   91 (261)
                      ...+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345567888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.81  E-value=7.5e-05  Score=37.43  Aligned_cols=35  Identities=29%  Similarity=0.541  Sum_probs=29.6

Q ss_pred             eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 024868          148 LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (261)
Q Consensus       148 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd  182 (261)
                      ..+..+...+.++.|+++++++++++.|+.+++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            33445566899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.78  E-value=0.014  Score=47.52  Aligned_cols=209  Identities=14%  Similarity=0.117  Sum_probs=103.6

Q ss_pred             eEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-----------cEEEEEEeCCccccceeeee
Q 024868           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKK  105 (261)
Q Consensus        37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~i~~~~~~~~~~~~~~~~  105 (261)
                      ..++.+|..+++....     .+..  .....+.|.++++.|+....+.           .|+.|.+.+......++-..
T Consensus       150 ~~l~v~Dl~tg~~l~d-----~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~  222 (414)
T PF02897_consen  150 YTLRVFDLETGKFLPD-----GIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE  222 (414)
T ss_dssp             EEEEEEETTTTEEEEE-----EEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred             EEEEEEECCCCcCcCC-----cccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence            4799999988864211     1111  1123499999998887665433           25566665544321121111


Q ss_pred             CCCCCCCCCeEEEEEeeCCcEEEEec---cC-CeEEEEEccCc----eEEeeccccCCce-eEEEEcCCCCEEEEecC--
Q 024868          106 MPPLQDAGPQKCLSFSVDGSRFAAGG---VD-GHLRIMHWPSL----RIILDEPKAHKSV-LDMDFSLDSEFLATTST--  174 (261)
Q Consensus       106 ~~~~~~~~~v~~~~~s~~~~~l~~~~---~d-~~i~~~d~~~~----~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~--  174 (261)
                         .........+..++|+++++...   .+ ..+++.++..+    .....+......+ ..+... .+.+++....  
T Consensus       223 ---~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a  298 (414)
T PF02897_consen  223 ---PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDA  298 (414)
T ss_dssp             ---TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-
T ss_pred             ---cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCC
Confidence               11111256788999999887643   23 45888888764    1222233333333 334333 4444444332  


Q ss_pred             -CCcEEEEEccCCcE---EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-CcCeeE
Q 024868          175 -DGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASV  249 (261)
Q Consensus       175 -d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~  249 (261)
                       ++.|.-.++.+...   ...+..+... +.-..+...+.++++  ...-.....|+++|+..+......... .+.+..
T Consensus       299 ~~~~l~~~~l~~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~Lvl--~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~  375 (414)
T PF02897_consen  299 PNGRLVAVDLADPSPAEWWTVLIPEDED-VSLEDVSLFKDYLVL--SYRENGSSRLRVYDLDDGKESREIPLPEAGSVSG  375 (414)
T ss_dssp             TT-EEEEEETTSTSGGGEEEEEE--SSS-EEEEEEEEETTEEEE--EEEETTEEEEEEEETT-TEEEEEEESSSSSEEEE
T ss_pred             CCcEEEEecccccccccceeEEcCCCCc-eeEEEEEEECCEEEE--EEEECCccEEEEEECCCCcEEeeecCCcceEEec
Confidence             35677778776552   2234333332 333344555666332  233344558999999833433334333 234555


Q ss_pred             EEEeeCCCEE
Q 024868          250 LSISLDGKYL  259 (261)
Q Consensus       250 ~~~s~dg~~l  259 (261)
                      +...+++..+
T Consensus       376 ~~~~~~~~~~  385 (414)
T PF02897_consen  376 VSGDFDSDEL  385 (414)
T ss_dssp             EES-TT-SEE
T ss_pred             cCCCCCCCEE
Confidence            5555555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.75  E-value=0.011  Score=45.27  Aligned_cols=144  Identities=15%  Similarity=0.111  Sum_probs=85.9

Q ss_pred             CCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee---
Q 024868           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD---  149 (261)
Q Consensus        73 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~---  149 (261)
                      ..++.|+.|.++| +++++......        .........|..+...|+-+.+++- .|+.++++++........   
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSK--------PTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcc--------ceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccc
Confidence            3578899998888 99999933322        1111223348999999977776666 469999999875443221   


Q ss_pred             -----------ccccCCceeEEE--EcCCC-CEEEEecCCCcEEEEEccCC-----cEEEEEeecCCCceEEEEEecCCC
Q 024868          150 -----------EPKAHKSVLDMD--FSLDS-EFLATTSTDGSARIWKTEDG-----VAWTFLTRNSDEKIELCRFSKDGT  210 (261)
Q Consensus       150 -----------~~~~~~~v~~~~--~s~~~-~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~p~~~  210 (261)
                                 .......+...+  -.+.+ ..|+.+ ....|.+|.....     +..+.+...  ..+..++|.  ++
T Consensus        75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~  149 (275)
T PF00780_consen   75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GN  149 (275)
T ss_pred             ccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CC
Confidence                       011112333333  11233 344444 4558888887653     455555543  358899998  34


Q ss_pred             cceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          211 KPFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                      .     ++.+.. ....+.|+.++...
T Consensus       150 ~-----i~v~~~-~~f~~idl~~~~~~  170 (275)
T PF00780_consen  150 K-----ICVGTS-KGFYLIDLNTGSPS  170 (275)
T ss_pred             E-----EEEEeC-CceEEEecCCCCce
Confidence            3     233333 34888898876543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.74  E-value=0.0037  Score=39.82  Aligned_cols=101  Identities=12%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             eEEEEEee---CC-cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE
Q 024868          115 QKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (261)
Q Consensus       115 v~~~~~s~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~  190 (261)
                      |+++++..   || +.|++|+.|..|++|+-  .+.+..+ ...+.|.++.-... ..++.+..+|+|-+|+-  .+.+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            45566554   33 57999999999999973  3443333 33456777776655 56888889999999985  34444


Q ss_pred             EEeecCCCceEEEEEec-C--CCcceEEEEEeeCCCcEEE
Q 024868          191 FLTRNSDEKIELCRFSK-D--GTKPFLFCTVQRGDKALLA  227 (261)
Q Consensus       191 ~~~~~~~~~v~~~~~~p-~--~~~~~~~~~~~~~~d~~i~  227 (261)
                      ..+..+.  +.++++.. +  |..-    ++++-.+|.|-
T Consensus        76 RiKSK~~--~~~~~~~D~~gdG~~e----LI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQ--VTSMAFYDINGDGVPE----LIVGWSNGKVE  109 (111)
T ss_pred             eeccCCC--eEEEEEEcCCCCCceE----EEEEecCCeEE
Confidence            4443332  55555443 3  2221    46666666653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.72  E-value=0.0032  Score=51.58  Aligned_cols=117  Identities=10%  Similarity=0.095  Sum_probs=70.8

Q ss_pred             CCCeEEEEEeeCC-----cEEEEeccCCeEEEEEccC-----ceEEeeccccC-C--c--eeEEEEcCCCCEEEEecCCC
Q 024868          112 AGPQKCLSFSVDG-----SRFAAGGVDGHLRIMHWPS-----LRIILDEPKAH-K--S--VLDMDFSLDSEFLATTSTDG  176 (261)
Q Consensus       112 ~~~v~~~~~s~~~-----~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~-~--~--v~~~~~s~~~~~l~~~~~d~  176 (261)
                      .+.|..+.|.|-+     .+||+ .....|.+|.+..     .+........- .  +  ...+.|+|....|+.-....
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d  134 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD  134 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence            3568999999942     34444 4777899998752     22221111111 1  1  35688999998888766655


Q ss_pred             cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      .-.+++++.....-.......+.|.+.+|.+||+++    +++.+..=.-++||-..
T Consensus       135 vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL----VVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL----VVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE----EEEeCCeEEEEEecCch
Confidence            545666654332222222334469999999999984    23333344578898543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.71  E-value=0.0086  Score=46.29  Aligned_cols=151  Identities=13%  Similarity=0.174  Sum_probs=84.5

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCc-eEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC------
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDP-MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ------  110 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~------  110 (261)
                      ....+|.+++..   ......+....+++ ..-++...+..++..+.+|.|+-.|+..........   ...+.      
T Consensus       160 ~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~---~~~~t~~e~~~  233 (342)
T PF06433_consen  160 LTVTLDADGKEA---QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP---WSLLTDAEKAD  233 (342)
T ss_dssp             EEEEETSTSSEE---EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE---EESS-HHHHHT
T ss_pred             EEEEECCCCCEe---EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc---ccccCcccccc
Confidence            445556555442   11122333333333 344555555566667899999999997765321110   11110      


Q ss_pred             --CCCCeEEEEEeeCCcEEEEec---c-----C--CeEEEEEccCceEEeeccccCCceeEEEEcCCCC-EEEEe-cCCC
Q 024868          111 --DAGPQKCLSFSVDGSRFAAGG---V-----D--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATT-STDG  176 (261)
Q Consensus       111 --~~~~v~~~~~s~~~~~l~~~~---~-----d--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~d~  176 (261)
                        ..+...-+++++....|++.-   .     |  ..|.++|+.+++.+.++.- ..++.++..+.+.+ +|++. ..++
T Consensus       234 ~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~  312 (342)
T PF06433_consen  234 GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDG  312 (342)
T ss_dssp             TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTT
T ss_pred             CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCC
Confidence              013345577777554444432   1     1  2488889999998776553 34688999999776 55544 4578


Q ss_pred             cEEEEEccCCcEEEEEeec
Q 024868          177 SARIWKTEDGVAWTFLTRN  195 (261)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~  195 (261)
                      .+.+||..+|+.++++..-
T Consensus       313 ~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  313 TLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEEEETTT--EEEEE---
T ss_pred             eEEEEeCcCCcEEeehhcc
Confidence            9999999999999888743

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.71  E-value=0.018  Score=46.77  Aligned_cols=87  Identities=10%  Similarity=0.101  Sum_probs=58.1

Q ss_pred             EeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc
Q 024868          120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK  199 (261)
Q Consensus       120 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  199 (261)
                      ++.+....+....++.+.+.+-...+.    ....+++..++.||+++++|.-..+|.+.+.+..-.+....+.......
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~  261 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP  261 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence            444555545544556666544322211    2234689999999999999999999999998876666666665554445


Q ss_pred             eEEEEEecCCC
Q 024868          200 IELCRFSKDGT  210 (261)
Q Consensus       200 v~~~~~~p~~~  210 (261)
                      ...+.|+-+..
T Consensus       262 p~~~~WCG~da  272 (410)
T PF04841_consen  262 PKQMAWCGNDA  272 (410)
T ss_pred             CcEEEEECCCc
Confidence            77888887654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.70  E-value=0.014  Score=45.24  Aligned_cols=162  Identities=14%  Similarity=0.098  Sum_probs=96.3

Q ss_pred             CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCe-EEEEEeeCCcEEEEeccCCeEEEEEccCceEE----eec
Q 024868           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----LDE  150 (261)
Q Consensus        76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~----~~~  150 (261)
                      +.+.+.+.||.+....+............  .......++ ..-+++..+..++..+.+|.|+-.|+......    ..+
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~--~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~  225 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTK--VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL  225 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEE--ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeecc--ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence            45777789999999999855433322211  112222333 34455655555666678999999888654321    111


Q ss_pred             cc-----c---CCceeEEEEcCCCCEEEEecC---CC-------cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868          151 PK-----A---HKSVLDMDFSLDSEFLATTST---DG-------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       151 ~~-----~---~~~v~~~~~s~~~~~l~~~~~---d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      ..     .   .+.-.-+++++..+.|+..-.   ++       .|.++|+.+++.+.++....  ++.++..+.+.+=+
T Consensus       226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~  303 (342)
T PF06433_consen  226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPL  303 (342)
T ss_dssp             S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-E
T ss_pred             cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcE
Confidence            11     0   122345788876655554222   22       48899999999999988543  47899999988742


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeeeeccC
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  244 (261)
                       |  ......++.+.+||..+|+.+..+...+
T Consensus       304 -L--~~~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  304 -L--YALSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             -E--EEEETTTTEEEEEETTT--EEEEE---S
T ss_pred             -E--EEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence             2  2344567899999999999987776544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.67  E-value=0.01  Score=43.06  Aligned_cols=136  Identities=14%  Similarity=0.150  Sum_probs=85.0

Q ss_pred             CCCceEEEECCCCCeEEEEec---------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-cc
Q 024868           63 EGDPMTIAVNPSGDDFVCSTT---------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GV  132 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~  132 (261)
                      ..+...-..+|+|++++-.-.         .|.++.|-....-.         .....-.--+.++|+.+.+.+... +.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~---------~i~~~v~IsNgl~Wd~d~K~fY~iDsl  178 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE---------LIWNCVGISNGLAWDSDAKKFYYIDSL  178 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCce---------eeehhccCCccccccccCcEEEEEccC
Confidence            345667778999998442211         24555554432211         000111233678999887766655 45


Q ss_pred             CCeEEEEE--ccCceE-----Eeeccc----cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceE
Q 024868          133 DGHLRIMH--WPSLRI-----ILDEPK----AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE  201 (261)
Q Consensus       133 d~~i~~~d--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  201 (261)
                      +-+|.-||  ..++..     +..+..    .+.....++...+|++.++.-..++|...|..+|+.+.++..... .++
T Consensus       179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-qit  257 (310)
T KOG4499|consen  179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP-QIT  257 (310)
T ss_pred             ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence            66776677  444432     222222    111234566677888888888889999999999999999988766 599


Q ss_pred             EEEEecC
Q 024868          202 LCRFSKD  208 (261)
Q Consensus       202 ~~~~~p~  208 (261)
                      +++|--.
T Consensus       258 sccFgGk  264 (310)
T KOG4499|consen  258 SCCFGGK  264 (310)
T ss_pred             EEEecCC
Confidence            9999644

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.00092  Score=53.79  Aligned_cols=134  Identities=15%  Similarity=0.143  Sum_probs=88.3

Q ss_pred             EeeCCcEEEE-eccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCE-------EEEecCCCcEEEEEccC-Cc-EE
Q 024868          120 FSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-------LATTSTDGSARIWKTED-GV-AW  189 (261)
Q Consensus       120 ~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------l~~~~~d~~i~iwd~~~-~~-~~  189 (261)
                      ...+.++|+. +.....++-.|++.|+.+....-+.. |.-+.+.|+.+.       -+.|-.|+.|.-||.+- ++ .+
T Consensus       341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             hccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            3344555444 44556688899999998766554444 777888886542       23455688899999883 32 22


Q ss_pred             EEEeecC---CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          190 TFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       190 ~~~~~~~---~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ...+.+.   .....|.+-..+|.      ++.++.+|.|++||.-....-..+++.+.+|..+..+.||++|+
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG~------IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil  487 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESGY------IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL  487 (644)
T ss_pred             eeeeccccccccccceeeecCCce------EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE
Confidence            2222221   11245555555665      58899999999999733223334677889999999999999875

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.63  E-value=0.026  Score=47.81  Aligned_cols=194  Identities=15%  Similarity=0.175  Sum_probs=100.6

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-----cEEEEEEe
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVY   93 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~   93 (261)
                      +.+.++||.+.  +....-.++.||+....+...+    .+...........  -+|...++|+.||     ++-.||..
T Consensus       333 ~~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a----~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  333 GKLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVA----PMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             CEEEEEccccC--CCcccceEEEecCCCCceeccC----CccCccccceeEE--ECCEEEEEeccccccccccEEEecCC
Confidence            45777888774  2333447899999988873311    1221222222222  2677888888885     35556665


Q ss_pred             CCccccceeeeeCCCCCCCCCeEEEEE-eeCCcEEEEeccCC------eEEEEEccCceEEeeccccCCc-eeEEEEcCC
Q 024868           94 GGATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDG------HLRIMHWPSLRIILDEPKAHKS-VLDMDFSLD  165 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~~  165 (261)
                      +.+-  ..    ...+.  .+...... .-+|+..++|+.++      ++..||..+..-.....-.... -..++ .-+
T Consensus       405 ~~~W--~~----va~m~--~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~  475 (571)
T KOG4441|consen  405 TNKW--TP----VAPML--TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLN  475 (571)
T ss_pred             CCcc--cc----cCCCC--cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EEC
Confidence            5442  10    11111  12222222 33788888888554      4778887765532211111111 11222 236


Q ss_pred             CCEEEEecCCC-----cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc-----EEEEEECCCCe
Q 024868          166 SEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----LLAVYDISTWN  235 (261)
Q Consensus       166 ~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~-----~i~~~d~~~~~  235 (261)
                      +.+.+.|+.|+     +|..||..+.+....-....  +...+.....+..+|    +.++.||     +|..||..+.+
T Consensus       476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~--~rs~~g~~~~~~~ly----~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  476 GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS--PRSAVGVVVLGGKLY----AVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             CEEEEECCccCCCccceEEEEcCCCCceeEcccCcc--ccccccEEEECCEEE----EEecccCccccceeEEcCCCCCc
Confidence            77788888776     37778888766544321111  122222333333333    5555554     67788876654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.56  E-value=0.012  Score=45.56  Aligned_cols=127  Identities=16%  Similarity=0.181  Sum_probs=78.3

Q ss_pred             eEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-CcEEEEEEeC--CccccceeeeeCCCCCCCC
Q 024868           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVYG--GATDINLLAKKMPPLQDAG  113 (261)
Q Consensus        37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~~--~~~~~~~~~~~~~~~~~~~  113 (261)
                      -.+|.+++....       ...+..+-...+.++||||++.|..+... +.|..|++..  ......  ......-...+
T Consensus       143 G~lyr~~p~g~~-------~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~--~~~~~~~~~~G  213 (307)
T COG3386         143 GSLYRVDPDGGV-------VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR--RGFVDFDEEPG  213 (307)
T ss_pred             ceEEEEcCCCCE-------EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc--ceEEEccCCCC
Confidence            378888875433       33455555567899999999988776554 7788887763  111010  00011111235


Q ss_pred             CeEEEEEeeCCcEEEEeccCC-eEEEEEccCceEEeeccccCCceeEEEE-cCCCCEEEEec
Q 024868          114 PQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEPKAHKSVLDMDF-SLDSEFLATTS  173 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~  173 (261)
                      ..-.++...+|.+-+++...| .|..|+.. ++.+....-....+.+++| .|+.+.|+..+
T Consensus       214 ~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         214 LPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            556677888888775554444 89999976 7777666655567888888 44555554443

>PHA02713 hypothetical protein; Provisional

Probab=97.56  E-value=0.014  Score=49.43  Aligned_cols=194  Identities=9%  Similarity=0.032  Sum_probs=92.8

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-----cEEEEEEe
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVY   93 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~   93 (261)
                      +.+.++||.+...  ...-.++.||+.+..+...+    .+.........+.  -+|+..+.|+.++     .+..||..
T Consensus       304 ~~IYviGG~~~~~--~~~~~v~~Yd~~~n~W~~~~----~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~  375 (557)
T PHA02713        304 NEIIIAGGYNFNN--PSLNKVYKINIENKIHVELP----PMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMG  375 (557)
T ss_pred             CEEEEEcCCCCCC--CccceEEEEECCCCeEeeCC----CCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECC
Confidence            3466666643211  11225788998887652211    1111111122222  2677777777653     46778876


Q ss_pred             CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-----------------------eEEEEEccCceEEeec
Q 024868           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----------------------HLRIMHWPSLRIILDE  150 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----------------------~i~~~d~~~~~~~~~~  150 (261)
                      +..-  ..    ...+.....-.++ ..-+++..+.|+.++                       .+..||..+.+-....
T Consensus       376 ~~~W--~~----~~~mp~~r~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~  448 (557)
T PHA02713        376 DDKW--KM----LPDMPIALSSYGM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP  448 (557)
T ss_pred             CCeE--EE----CCCCCcccccccE-EEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence            5532  11    1122211111111 123688888887542                       4677887665432111


Q ss_pred             cccCCceeEEEEcCCCCEEEEecCC------CcEEEEEccC-CcEE--EEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868          151 PKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTED-GVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       151 ~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                      .-.......-...-++++.+.|+.+      ..+..||..+ .+-.  ..+.....  ..+++. -+|+.     .+.|+
T Consensus       449 ~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~-~~~~i-----yv~Gg  520 (557)
T PHA02713        449 NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTIL-HDNTI-----MMLHC  520 (557)
T ss_pred             CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEE-ECCEE-----EEEee
Confidence            1111111111122356777777654      2467899887 4433  22221111  112222 25554     35677


Q ss_pred             CCc--EEEEEECCCCe
Q 024868          222 DKA--LLAVYDISTWN  235 (261)
Q Consensus       222 ~d~--~i~~~d~~~~~  235 (261)
                      .++  .+..||..+.+
T Consensus       521 ~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        521 YESYMLQDTFNVYTYE  536 (557)
T ss_pred             ecceeehhhcCccccc
Confidence            676  78888887655

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.50  E-value=0.006  Score=45.54  Aligned_cols=142  Identities=17%  Similarity=0.131  Sum_probs=90.9

Q ss_pred             eEEEEEeeC-CcEEEEeccCCe-EEEEEccCceEEeeccccCCc--eeEEEEcCCCCEEEEecCC-----CcEEEEEccC
Q 024868          115 QKCLSFSVD-GSRFAAGGVDGH-LRIMHWPSLRIILDEPKAHKS--VLDMDFSLDSEFLATTSTD-----GSARIWKTED  185 (261)
Q Consensus       115 v~~~~~s~~-~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~  185 (261)
                      ...++++|. .+-++.+-.-|+ ..++|....+....+....+.  .-.=.|||||++|+..-.|     |.|-|||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            345788884 455666665554 667888776665444433331  2345699999999986554     6799999985


Q ss_pred             C-cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC----------------CCcEEEEEECCCCeEEeeee----ccC
Q 024868          186 G-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG----------------DKALLAVYDISTWNKIGHKR----LLR  244 (261)
Q Consensus       186 ~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~----------------~d~~i~~~d~~~~~~~~~~~----~~~  244 (261)
                      + +.+-++..+.- ....+.|.+||+.+.   ++.++                ..-.+.+.|..+|+.+.+..    .+.
T Consensus       150 ~fqrvgE~~t~Gi-GpHev~lm~DGrtlv---vanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~  225 (366)
T COG3490         150 GFQRVGEFSTHGI-GPHEVTLMADGRTLV---VANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ  225 (366)
T ss_pred             ccceecccccCCc-CcceeEEecCCcEEE---EeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence            3 34555665544 377899999999731   22221                12246677777777654332    234


Q ss_pred             cCeeEEEEeeCCCEEe
Q 024868          245 KPASVLSISLDGKYLA  260 (261)
Q Consensus       245 ~~v~~~~~s~dg~~la  260 (261)
                      ..+..++..+||+.++
T Consensus       226 lSiRHld~g~dgtvwf  241 (366)
T COG3490         226 LSIRHLDIGRDGTVWF  241 (366)
T ss_pred             cceeeeeeCCCCcEEE
Confidence            5788899999988653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.49  E-value=0.027  Score=43.36  Aligned_cols=170  Identities=16%  Similarity=0.201  Sum_probs=86.3

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC  117 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~  117 (261)
                      .|+.=......+      ........+.+..+.-++||++++++.....+.-|+-....  ..     ........++..
T Consensus       125 ~iy~T~DgG~tW------~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~--w~-----~~~r~~~~riq~  191 (302)
T PF14870_consen  125 AIYRTTDGGKTW------QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT--WQ-----PHNRNSSRRIQS  191 (302)
T ss_dssp             -EEEESSTTSSE------EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS---E-----EEE--SSS-EEE
T ss_pred             cEEEeCCCCCCe------eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc--ce-----EEccCccceehh
Confidence            566555455554      33445556788899999999988887544434455543211  11     111112468999


Q ss_pred             EEEeeCCcEEEEeccCCeEEEEEccCceEEeec--cc--cCC-ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEE
Q 024868          118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--PK--AHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (261)
Q Consensus       118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~--~~~-~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  192 (261)
                      |.|+|++.+.+.+ ..|.|+.=+..........  ..  ..+ .+..++|.+++...++++. |. .+...+.|+.-+..
T Consensus       192 ~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~~  268 (302)
T PF14870_consen  192 MGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQKD  268 (302)
T ss_dssp             EEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-
T ss_pred             ceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceEC
Confidence            9999998877766 8888888762222211111  11  122 4899999999888887764 43 34455566655444


Q ss_pred             ee--cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868          193 TR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (261)
Q Consensus       193 ~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~  229 (261)
                      ..  ......+.+.|.++.+-      +.-+.+|.|--|
T Consensus       269 ~~~~~~~~n~~~i~f~~~~~g------f~lG~~G~ll~~  301 (302)
T PF14870_consen  269 RVGENVPSNLYRIVFVNPDKG------FVLGQDGVLLRY  301 (302)
T ss_dssp             GGGTTSSS---EEEEEETTEE------EEE-STTEEEEE
T ss_pred             ccccCCCCceEEEEEcCCCce------EEECCCcEEEEe
Confidence            33  22334788999877664      556677776544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.48  E-value=0.004  Score=46.43  Aligned_cols=106  Identities=15%  Similarity=0.172  Sum_probs=69.0

Q ss_pred             ceeEEEEcCC-CCEEEEecCCC-cEEEEEccCCcEEEEEeecCCCc-eEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          156 SVLDMDFSLD-SEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       156 ~v~~~~~s~~-~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      .-..++++|. .+-++.+-.-| ...++|..+.+...++....+.. .-.-.|||||+++|..---....-|.|-+||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            3456788884 44455555444 46789998887766665433221 223469999998432100011234789999998


Q ss_pred             CC-eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          233 TW-NKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       233 ~~-~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+ +.+.++..++-....+.|.+||+.|++
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvv  178 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVV  178 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEE
Confidence            54 356677788878899999999999874

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.0017  Score=56.51  Aligned_cols=102  Identities=25%  Similarity=0.300  Sum_probs=73.3

Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      .+..++.|+..|.+-..|....-.+      ........++|.+++|+.+|+.++.|-.+|.|.+||+.+++....+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~------~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP------LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch------hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            4556888888898988888764221      1112223579999999999999999999999999999988876666555


Q ss_pred             CC---ceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868          154 HK---SVLDMDFSLDSEFLATTSTDGSARIWKT  183 (261)
Q Consensus       154 ~~---~v~~~~~s~~~~~l~~~~~d~~i~iwd~  183 (261)
                      ..   .+..+.+..++..++++...|.  +|.+
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            44   3445555556667788777675  4543

>PHA03098 kelch-like protein; Provisional

Probab=97.42  E-value=0.06  Score=45.53  Aligned_cols=196  Identities=14%  Similarity=0.119  Sum_probs=91.4

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEEEEe
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVY   93 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~   93 (261)
                      ..+++.||.++....  .-.++.||+.+..+...+.    +.........+.+  +++.++.|+.+     ..+..||..
T Consensus       295 ~~lyv~GG~~~~~~~--~~~v~~yd~~~~~W~~~~~----~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~  366 (534)
T PHA03098        295 NVIYFIGGMNKNNLS--VNSVVSYDTKTKSWNKVPE----LIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPG  366 (534)
T ss_pred             CEEEEECCCcCCCCe--eccEEEEeCCCCeeeECCC----CCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCC
Confidence            346667765432111  1257889998877633221    1111122222322  56677777765     346667766


Q ss_pred             CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC------CeEEEEEccCceEEeeccccCCceeEEEEcCCCC
Q 024868           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE  167 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  167 (261)
                      +..-  ..    ...+.....-.+. ..-+++.++.|+.+      ..+..||..+.+-..............+...+++
T Consensus       367 ~~~W--~~----~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~  439 (534)
T PHA03098        367 ESKW--RE----EPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGK  439 (534)
T ss_pred             CCce--ee----CCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCE
Confidence            5432  11    1111111111112 23467777777732      3578889876543211110111111112233566


Q ss_pred             EEEEecCC--------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEEECCCC
Q 024868          168 FLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTW  234 (261)
Q Consensus       168 ~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~d~~~~  234 (261)
                      .++.|+.+        ..+.+||..+++....-.......-.+++ .-+++. |    +.|+.     .+.+.+||..+.
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i-y----v~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKI-Y----VVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEE-E----EEcCCcCCcccceeEEEeCCCC
Confidence            66777643        23888998876543321111111011121 225553 2    33443     257899998875


Q ss_pred             e
Q 024868          235 N  235 (261)
Q Consensus       235 ~  235 (261)
                      +
T Consensus       514 ~  514 (534)
T PHA03098        514 T  514 (534)
T ss_pred             E
Confidence            4

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.38  E-value=0.021  Score=47.06  Aligned_cols=121  Identities=8%  Similarity=0.082  Sum_probs=71.0

Q ss_pred             CCceEEEECCC----CCeEEEEecCCcEEEEEEeCCccc-cceeeeeCCCCCCCCC--eEEEEEeeCCcEEEEeccCCeE
Q 024868           64 GDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGP--QKCLSFSVDGSRFAAGGVDGHL  136 (261)
Q Consensus        64 ~~v~~~~~~~~----~~~l~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d~~i  136 (261)
                      ..|..+.|.|-    -..|++.-....|.+|.+...... .+.+......+...-+  ...+.|+|....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            45889999984    323444456778999999733221 1111111111111111  2567899988877776544433


Q ss_pred             EEEEccCce-EEeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEcc
Q 024868          137 RIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTE  184 (261)
Q Consensus       137 ~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~  184 (261)
                      .+++++... .+..-....+.|.|.+|.+||+.|+.+- ..=.-+|||-.
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            445554332 3333345667899999999999877653 23456788843

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.38  E-value=0.034  Score=41.88  Aligned_cols=170  Identities=14%  Similarity=0.128  Sum_probs=106.3

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      |.++.|+|+  .+.+++++....        .+...+.++.-+     ....+.+- .....+.+..++++.++--.++.
T Consensus        88 vS~LTynp~--~rtLFav~n~p~--------~iVElt~~Gdli-----rtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~  151 (316)
T COG3204          88 VSSLTYNPD--TRTLFAVTNKPA--------AIVELTKEGDLI-----RTIPLTGF-SDPETIEYIGGNQFVIVDERDRA  151 (316)
T ss_pred             ccceeeCCC--cceEEEecCCCc--------eEEEEecCCceE-----EEeccccc-CChhHeEEecCCEEEEEehhcce
Confidence            778889886  366777777766        777777766543     23334442 34567888888888887777899


Q ss_pred             EEEEEEeCCccccceee--eeCCCCCC-CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec-----cccC----
Q 024868           87 CKLFEVYGGATDINLLA--KKMPPLQD-AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-----PKAH----  154 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~~~~----  154 (261)
                      ++++.+...........  -......+ ......++|+|..+.|.++-...-+.||.+.........     ....    
T Consensus       152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f  231 (316)
T COG3204         152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF  231 (316)
T ss_pred             EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence            99998876643221111  11222222 456788999998888888867777777776533311111     1111    


Q ss_pred             -CceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868          155 -KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       155 -~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (261)
                       ..+.++.|++ .+.+++-+..++.+.-.|.. |+++..+.
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls  271 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS  271 (316)
T ss_pred             eeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence             2467788887 45566666677778777764 55555443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.35  E-value=0.029  Score=47.45  Aligned_cols=108  Identities=17%  Similarity=0.107  Sum_probs=71.1

Q ss_pred             EEEeeCCcEEEEeccCCeEEEEEccCceEEeec-cccCCceeEEEE--cCCCCEEEEecCCCcEEEEEcc---------C
Q 024868          118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PKAHKSVLDMDF--SLDSEFLATTSTDGSARIWKTE---------D  185 (261)
Q Consensus       118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~iwd~~---------~  185 (261)
                      +.-|.-++..++-+....+.|||.+.+...... ...++.|.+++|  .|+++.+++.+....|.++.-.         +
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            334444444444445567999999877643322 244668999999  4689999998899999998642         1


Q ss_pred             CcEEEEE--eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          186 GVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       186 ~~~~~~~--~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      ..+++.+  ..+...+|.+..|.++|..     ++.+  .+++.|+|-.
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~L-----vV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGTL-----VVGS--GNQLFVFDKW  156 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCeE-----EEEe--CCEEEEECCC
Confidence            2233333  3344457999999999986     3333  3468898854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.33  E-value=0.03  Score=44.24  Aligned_cols=137  Identities=12%  Similarity=-0.016  Sum_probs=71.9

Q ss_pred             EEEEeeCCcEEEEecc---CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868          117 CLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       117 ~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (261)
                      .=+|.+||+.|+.++.   ...+++.|+.+++..+.............++|+++.++-.-.+..++-.|+++.+....+.
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            3467889977776653   4468888999988765544333334456678988887665556789999999987655555


Q ss_pred             ecCCCceEEEEEe--cCCCcceEEEEEe-------------------eCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE
Q 024868          194 RNSDEKIELCRFS--KDGTKPFLFCTVQ-------------------RGDKALLAVYDISTWNKIGHKRLLRKPASVLSI  252 (261)
Q Consensus       194 ~~~~~~v~~~~~~--p~~~~~~~~~~~~-------------------~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  252 (261)
                      .... .+....|.  .|+.. ++. +..                   +.-...|.-.|+++|+.. .+......+..+.|
T Consensus       120 ~p~~-~~g~gt~v~n~d~t~-~~g-~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~~~~wlgH~~f  195 (386)
T PF14583_consen  120 VPDD-WKGYGTWVANSDCTK-LVG-IEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFEDTDWLGHVQF  195 (386)
T ss_dssp             --TT-EEEEEEEEE-TTSSE-EEE-EEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEEESS-EEEEEE
T ss_pred             CCcc-cccccceeeCCCccE-EEE-EEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEecCccccCccc
Confidence            4433 35445564  34554 211 221                   122346777888888754 33334566677778


Q ss_pred             eeCCC
Q 024868          253 SLDGK  257 (261)
Q Consensus       253 s~dg~  257 (261)
                      ||...
T Consensus       196 sP~dp  200 (386)
T PF14583_consen  196 SPTDP  200 (386)
T ss_dssp             ETTEE
T ss_pred             CCCCC
Confidence            87543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.32  E-value=0.0013  Score=34.99  Aligned_cols=33  Identities=15%  Similarity=0.262  Sum_probs=29.5

Q ss_pred             CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE
Q 024868          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (261)
Q Consensus       155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~  188 (261)
                      ..|..++|+|...+||.++.+|.|.++.+ +++.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            46999999999999999999999999998 5554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.29  E-value=0.043  Score=43.96  Aligned_cols=140  Identities=11%  Similarity=0.137  Sum_probs=74.0

Q ss_pred             CCceEEEECCCCCeEEEEe-----------cCC-cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec
Q 024868           64 GDPMTIAVNPSGDDFVCST-----------TNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (261)
                      .....++|.++|+.+++-.           ..+ .|.+++-.++.-.....   ............+++.+++ .++ +.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~---~vfa~~l~~p~Gi~~~~~G-lyV-~~   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS---NVFAEELSMVTGLAVAVGG-VYV-AT   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee---EEeecCCCCccceeEecCC-EEE-eC
Confidence            4567899999998776642           123 56666543322111100   0111122345789999988 444 43


Q ss_pred             cCCeEEEE-EccC-------ceEEee-ccc----cCCceeEEEEcCCCCEEEEecCC-------------------CcEE
Q 024868          132 VDGHLRIM-HWPS-------LRIILD-EPK----AHKSVLDMDFSLDSEFLATTSTD-------------------GSAR  179 (261)
Q Consensus       132 ~d~~i~~~-d~~~-------~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~d-------------------~~i~  179 (261)
                      .. .|..+ |...       .+.+.. +..    ++.....+.|.|||.+.++.+..                   +.|.
T Consensus        89 ~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        89 PP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             CC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence            44 34434 4321       112222 211    12347789999999876654421                   3455


Q ss_pred             EEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      -+|..+++. ..+..... ....++|+|+|+.
T Consensus       168 r~~pdg~~~-e~~a~G~r-np~Gl~~d~~G~l  197 (367)
T TIGR02604       168 RYNPDGGKL-RVVAHGFQ-NPYGHSVDSWGDV  197 (367)
T ss_pred             EEecCCCeE-EEEecCcC-CCccceECCCCCE
Confidence            555544443 33332222 3678999999986

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.26  E-value=0.037  Score=44.31  Aligned_cols=141  Identities=10%  Similarity=0.005  Sum_probs=76.0

Q ss_pred             CCeEEEEEeeCCcEEEEec-----------cCC-eEEEEEccC--ceE--EeeccccCCceeEEEEcCCCCEEEEecCCC
Q 024868          113 GPQKCLSFSVDGSRFAAGG-----------VDG-HLRIMHWPS--LRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDG  176 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~-----------~d~-~i~~~d~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  176 (261)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+...-.....+++.++| +++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            3456789999999877642           223 677776432  221  12222223356889999988 444 44443


Q ss_pred             cEEEEEccC-----CcEEE---EEeec---CCCceEEEEEecCCCcceEEEEEeeC------------------CCcEEE
Q 024868          177 SARIWKTED-----GVAWT---FLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG------------------DKALLA  227 (261)
Q Consensus       177 ~i~iwd~~~-----~~~~~---~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~------------------~d~~i~  227 (261)
                      ..++.|...     ++...   .+...   .......++|.|||.. |+   ..++                  ..+.|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv---~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YF---NHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EE---ecccCCCceeccCCCccCcccccCceEE
Confidence            333334431     12111   12111   1123678999999975 32   2221                  115567


Q ss_pred             EEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      -+|..+++.. .+...-.....++|+|+|++++
T Consensus       168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~  199 (367)
T TIGR02604       168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFF  199 (367)
T ss_pred             EEecCCCeEE-EEecCcCCCccceECCCCCEEE
Confidence            7777655433 2222223456899999998765

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK10115 protease 2; Provisional

Probab=97.25  E-value=0.058  Score=46.93  Aligned_cols=113  Identities=6%  Similarity=-0.089  Sum_probs=68.9

Q ss_pred             CeEEEEEeeCCcEEEEecc-C----CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC------CcEEEEE
Q 024868          114 PQKCLSFSVDGSRFAAGGV-D----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWK  182 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~-d----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~iwd  182 (261)
                      .+..+.||||+++|+.+.. +    ..+++.|+.+++.+....... . ..++|++|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4677889999999887642 2    258888988776332222111 1 469999999866654332      3678888


Q ss_pred             ccCC--cEEEEEeecCCCceE-EEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          183 TEDG--VAWTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       183 ~~~~--~~~~~~~~~~~~~v~-~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      +.++  +....+..... ... ....+.++++++  .-.....++.+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~-~~~~~~~~s~d~~~l~--i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDD-TFYVSLHKTTSKHYVV--IHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCC-CEEEEEEEcCCCCEEE--EEEECCccccEEEEEC
Confidence            8877  33333433222 233 333344788643  2345556678999995

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.25  E-value=0.094  Score=44.16  Aligned_cols=76  Identities=13%  Similarity=0.059  Sum_probs=46.0

Q ss_pred             CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe-eEEEEee
Q 024868          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISL  254 (261)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~s~  254 (261)
                      +.+.-+|+.+|+...+....... ..+. ..-.+..     ++.+..+|.++.+|.++|+.+.......... .-+.+.-
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~-~~~~-l~t~g~l-----vf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~  513 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPL-WGGV-LATAGDL-----VFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQ  513 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCC-CCcc-eEECCcE-----EEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEe
Confidence            45777888888877766533221 1121 2223443     3557789999999999999987666543221 2244556


Q ss_pred             CCCE
Q 024868          255 DGKY  258 (261)
Q Consensus       255 dg~~  258 (261)
                      +|+.
T Consensus       514 ~G~q  517 (527)
T TIGR03075       514 DGKQ  517 (527)
T ss_pred             CCEE
Confidence            7764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.0055  Score=53.96  Aligned_cols=146  Identities=10%  Similarity=-0.038  Sum_probs=91.1

Q ss_pred             CceEEEECCCCCeEEEEe--cCCcEEEEEEeCCccccce----eeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEE
Q 024868           65 DPMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATDINL----LAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLR  137 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~  137 (261)
                      .+..+..++|+...++..  ++-.|+.||++.-......    +..............++.|+|.- ...+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            466667778877655443  3447888999765432211    11111112223455788899843 3455666899998


Q ss_pred             EEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee---cCCCceEEEEEecCCCc
Q 024868          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTK  211 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~  211 (261)
                      +..+................++++|+|.|+.++.|-..|.+.-|-.. .+....+..   .....|.+++|...-.+
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence            88765444333333334468999999999999999999998887653 343333322   22356899999876655

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.22  E-value=0.0017  Score=34.55  Aligned_cols=31  Identities=13%  Similarity=0.189  Sum_probs=28.3

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEe
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY   93 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~   93 (261)
                      ...|..++|+|..+.||.+..+|.|.++++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3569999999999999999999999999994

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.21  E-value=0.055  Score=40.83  Aligned_cols=189  Identities=11%  Similarity=0.071  Sum_probs=112.9

Q ss_pred             ecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE
Q 024868           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (261)
Q Consensus        59 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~  138 (261)
                      ..+-+..+.++.|+|+.+.|++......-.++=-..++....      .++........+.+.-+|+++++--.++.+.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt------iPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~  154 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT------IPLTGFSDPETIEYIGGNQFVIVDERDRALYL  154 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE------ecccccCChhHeEEecCCEEEEEehhcceEEE
Confidence            344455699999999999888877666555553333432111      11222334456778778888777777888888


Q ss_pred             EEccCceEEee---------cccc-CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE-E--EEEeecC------CCc
Q 024868          139 MHWPSLRIILD---------EPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-W--TFLTRNS------DEK  199 (261)
Q Consensus       139 ~d~~~~~~~~~---------~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~-~--~~~~~~~------~~~  199 (261)
                      +.+........         ...+ +.....++|+|..+.|..+=.-+-+.||....+.. +  .....+.      -..
T Consensus       155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D  234 (316)
T COG3204         155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD  234 (316)
T ss_pred             EEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence            87764422111         1112 44688999999888777776666677776653321 1  0000000      013


Q ss_pred             eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC---------cCeeEEEEeeCCCE
Q 024868          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKY  258 (261)
Q Consensus       200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~dg~~  258 (261)
                      +.++.|++....+    ++.+.+++.+.-.|.. |+.+..+....         ...-.++..++|..
T Consensus       235 vSgl~~~~~~~~L----LVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l  297 (316)
T COG3204         235 VSGLEFNAITNSL----LVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL  297 (316)
T ss_pred             cccceecCCCCcE----EEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence            6778898876663    4667788888888875 34343333222         12345777777764

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.17  E-value=0.088  Score=42.25  Aligned_cols=237  Identities=11%  Similarity=0.061  Sum_probs=96.5

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC-----------CCCCeEEEEe-cCCcE
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-----------PSGDDFVCST-TNGGC   87 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~l~~~~-~dg~i   87 (261)
                      .++++-..++...-+..+.....|++..... +-.....++.-.+.....-|+           .+.++|+..+ .+++|
T Consensus        22 ~YV~~~~~~~~~~~pD~LatVDvdP~S~tYg-qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrI  100 (461)
T PF05694_consen   22 LYVWCLYPGTGIDKPDYLATVDVDPDSPTYG-QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRI  100 (461)
T ss_dssp             EEEEEE-TTTT-----EEEEEE--TTSTTTT-SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--E
T ss_pred             EEEEeecCCCCCCCCCeEEEEECCCCCCCcc-cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcE
Confidence            3444443333223344455555666554331 112223344333456666665           2456777666 56889


Q ss_pred             EEEEEeCCccccceeeeeCC-CCC---CCCCeEEEEEeeCCcEEEEec------cCCeEEEEEccCceEEeeccccCC--
Q 024868           88 KLFEVYGGATDINLLAKKMP-PLQ---DAGPQKCLSFSVDGSRFAAGG------VDGHLRIMHWPSLRIILDEPKAHK--  155 (261)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~-~~~---~~~~v~~~~~s~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~--  155 (261)
                      +|.|+.+.....++...... .+.   .-........-|+|+.++++-      .-|-+.++|-++.+..........  
T Consensus       101 yviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~  180 (461)
T PF05694_consen  101 YVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQ  180 (461)
T ss_dssp             EEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT-
T ss_pred             EEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCC
Confidence            99999865432222211100 010   111223334457888877753      224588888777666554443222  


Q ss_pred             -ceeEEEEcCCCCEEEEecC--------------------CCcEEEEEccCCcEEEEEeecCCC-ceEEEEEecC--CCc
Q 024868          156 -SVLDMDFSLDSEFLATTST--------------------DGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKD--GTK  211 (261)
Q Consensus       156 -~v~~~~~s~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~p~--~~~  211 (261)
                       .-+...|.|.-+.++++.-                    ..++.+||+.+.+.++++.....+ .+..+.|..+  ..+
T Consensus       181 ~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~  260 (461)
T PF05694_consen  181 PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY  260 (461)
T ss_dssp             -----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E
T ss_pred             CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc
Confidence             3567888888777777543                    246999999999999998765433 3456666554  444


Q ss_pred             ceEEEEEeeCCCcEEEEEEC-CCCe--E--Eeeeecc-----------------CcCeeEEEEeeCCCEEeC
Q 024868          212 PFLFCTVQRGDKALLAVYDI-STWN--K--IGHKRLL-----------------RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~-~~~~--~--~~~~~~~-----------------~~~v~~~~~s~dg~~la~  261 (261)
                      -|+-++    -..+|..|-- +.++  .  +..+...                 ..-++++..|.|.++|.+
T Consensus       261 gFvg~a----Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv  328 (461)
T PF05694_consen  261 GFVGCA----LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV  328 (461)
T ss_dssp             EEEEEE------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred             eEEEEe----ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence            232221    2334444433 3332  1  1111111                 234789999999999863

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.0016  Score=56.76  Aligned_cols=87  Identities=8%  Similarity=0.077  Sum_probs=62.9

Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  238 (261)
                      .++-.-.+..++.++..|.+-..|+...-.......+..++|++++|+.+|+.     +..|-.+|.|.+||+..++.++
T Consensus        92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~-----l~~G~~~G~V~v~D~~~~k~l~  166 (1206)
T KOG2079|consen   92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL-----LLAGLGDGHVTVWDMHRAKILK  166 (1206)
T ss_pred             eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce-----eccccCCCcEEEEEccCCccee
Confidence            33333346678889888999999886531111122234558999999999998     6888899999999999988887


Q ss_pred             eeeccCcCeeEE
Q 024868          239 HKRLLRKPASVL  250 (261)
Q Consensus       239 ~~~~~~~~v~~~  250 (261)
                      .+..++.+...+
T Consensus       167 ~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  167 VITEHGAPVTGV  178 (1206)
T ss_pred             eeeecCCccceE
Confidence            777776655443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.08  E-value=0.022  Score=45.78  Aligned_cols=87  Identities=13%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC-------------cceEEEEEeeCC
Q 024868          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-------------KPFLFCTVQRGD  222 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~-------------~~~~~~~~~~~~  222 (261)
                      .+.++..+|++++.|+...=|.|.++|+.++..++.+++..+..+.=+.....+.             ...++.++-.-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            5788999999998888766699999999999988888876554222121111111             112222455667


Q ss_pred             CcEEEEEECCCCeEEeeeec
Q 024868          223 KALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       223 d~~i~~~d~~~~~~~~~~~~  242 (261)
                      -|.|.||++++|..+..+..
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CCeEEEEecCCCCEEEEEEe
Confidence            88999999999988765554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.06  E-value=0.004  Score=44.83  Aligned_cols=105  Identities=16%  Similarity=0.176  Sum_probs=65.5

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEE-EEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL-SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      +..+++|+.+|.|++|............     . .....+.++ .--.++.+..++..+|.|+.|++...+.+.....|
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-----~-s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h  143 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-----C-SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH  143 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhh-----h-cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence            4568889999999999886332211100     0 011222222 22224567888889999999999888776555444


Q ss_pred             C-CceeEEEEcCCCCEEEEe--cCCCcEEEEEccC
Q 024868          154 H-KSVLDMDFSLDSEFLATT--STDGSARIWKTED  185 (261)
Q Consensus       154 ~-~~v~~~~~s~~~~~l~~~--~~d~~i~iwd~~~  185 (261)
                      . .++.....+..+++++.+  |.|..++.|++..
T Consensus       144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            4 345555555566667666  6777777777753

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.05  E-value=0.089  Score=40.19  Aligned_cols=119  Identities=12%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceee--ee-----CCCCCCCCCeEEEE--EeeCC-cEEEEeccCC
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA--KK-----MPPLQDAGPQKCLS--FSVDG-SRFAAGGVDG  134 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~-----~~~~~~~~~v~~~~--~s~~~-~~l~~~~~d~  134 (261)
                      .|..+...|+-+.|++-+ |+.++++++..-........  ..     ...+.....+..++  -.+.+ ..++++ ...
T Consensus        37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk  114 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKK  114 (275)
T ss_pred             eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECC
Confidence            399999999888777654 58999999976554221100  00     00122223344444  11233 344444 566


Q ss_pred             eEEEEEccCce----EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE
Q 024868          135 HLRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (261)
Q Consensus       135 ~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~  188 (261)
                      .|.+|......    ...+...-...+..++|.  ++.++.+.. +...+.|+.++..
T Consensus       115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~  169 (275)
T PF00780_consen  115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSP  169 (275)
T ss_pred             EEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCc
Confidence            88888876531    122223344678899998  556666654 3467777775544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.0085  Score=52.87  Aligned_cols=141  Identities=10%  Similarity=-0.073  Sum_probs=88.6

Q ss_pred             CCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEe----e-c------cccCCceeEEEEcCCCC-EEEEecCCCcE
Q 024868          113 GPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIIL----D-E------PKAHKSVLDMDFSLDSE-FLATTSTDGSA  178 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~----~-~------~~~~~~v~~~~~s~~~~-~l~~~~~d~~i  178 (261)
                      -++..+...+|++..++..  .+-.|..||+++-....    . +      ........++.|+|.-. ..+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            4566777788876655443  44478999987533211    0 0      11112356788988533 35566678989


Q ss_pred             EEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec---c-CcCeeEEEEe
Q 024868          179 RIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---L-RKPASVLSIS  253 (261)
Q Consensus       179 ~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~---~-~~~v~~~~~s  253 (261)
                      ++..+.... ....+.  .....++++|+|.|++     ++.+...|++.-|...- +....+..   . ...|.++.|-
T Consensus       181 ~V~~~~~~~~~v~s~p--~t~~~Tav~WSprGKQ-----l~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFP--VTNSQTAVLWSPRGKQ-----LFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             hhhhhhhhhhhhcccC--cccceeeEEeccccce-----eeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEe
Confidence            888776332 222222  2234899999999999     68889999999888643 32222221   1 2678899998


Q ss_pred             eCCCEEeC
Q 024868          254 LDGKYLAM  261 (261)
Q Consensus       254 ~dg~~la~  261 (261)
                      ..-.+|++
T Consensus       253 ~t~eflvv  260 (1405)
T KOG3630|consen  253 STQEFLVV  260 (1405)
T ss_pred             cceeEEEE
Confidence            77777653

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.01  E-value=0.0046  Score=44.53  Aligned_cols=107  Identities=13%  Similarity=0.121  Sum_probs=69.5

Q ss_pred             CCcEEEEeccCCeEEEEEccCceEEeecc-ccCCceeEEE-EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCce
Q 024868          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMD-FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI  200 (261)
Q Consensus       123 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~-~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  200 (261)
                      -+..+++|+.+|.|++|............ .....|.++- --.++.+..+++.|+.|+.|+..-.+.+-....|...+.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            35678899999999999876322211111 2222333332 233566888999999999999988777665554543456


Q ss_pred             EEEEEecCCCcceEEEEEee--CCCcEEEEEECCCC
Q 024868          201 ELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTW  234 (261)
Q Consensus       201 ~~~~~~p~~~~~~~~~~~~~--~~d~~i~~~d~~~~  234 (261)
                      .....+..++.     +..+  +.|..++.|++..-
T Consensus       149 e~~ivv~sd~~-----i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  149 EELIVVGSDEF-----LKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ceeEEecCCce-----EEeeccccchhhhhcchhhh
Confidence            66666666665     3444  77788888888643

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.97  E-value=0.0019  Score=55.42  Aligned_cols=177  Identities=11%  Similarity=0.062  Sum_probs=96.4

Q ss_pred             eecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeC--CccccceeeeeCCCCCC-CCCeEEEEEeeCCcEEEEeccC
Q 024868           58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG--GATDINLLAKKMPPLQD-AGPQKCLSFSVDGSRFAAGGVD  133 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d  133 (261)
                      .+++..+.+..+.|.. +-..+.  ..-|.+.+|+++-  ++....+.......... ...|..+-|-++..++..+..+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            3556677788888743 333333  2336789998864  22212222111111111 1233334444466778888888


Q ss_pred             CeEEEEEccCceEEeeccccCCceeE-----------EEEcCCCCEEEEecCCCcEEEEEcc-----CCcEEEEEeecCC
Q 024868          134 GHLRIMHWPSLRIILDEPKAHKSVLD-----------MDFSLDSEFLATTSTDGSARIWKTE-----DGVAWTFLTRNSD  197 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~~v~~-----------~~~s~~~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~~~  197 (261)
                      +++++..+.+... ..+..|...+..           -..||||..++..+.||.++.|.+.     .-+++..++.|..
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence            8988887654332 111222222221           2269999999999999988777654     3345666666664


Q ss_pred             CceEEEEEecCCCc-----ceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          198 EKIELCRFSKDGTK-----PFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       198 ~~v~~~~~~p~~~~-----~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                      .+-.|.-|+.....     .+.+.+-+...+..+++|....++++
T Consensus       284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            43333323322111     12222344455667899998777765

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.95  E-value=0.24  Score=43.54  Aligned_cols=163  Identities=12%  Similarity=0.079  Sum_probs=90.1

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeee-C---CCCCC-CCCeEEEEEee--CCcEEEEecc----------CCeEE
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKK-M---PPLQD-AGPQKCLSFSV--DGSRFAAGGV----------DGHLR  137 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~---~~~~~-~~~v~~~~~s~--~~~~l~~~~~----------d~~i~  137 (261)
                      +.+++.++.|+.+.-.|.++++.....-..- .   ..+.. ...-..+.-+|  .+..+++++.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            4578888889999999998887643221000 0   00000 00001111122  1334555532          68899


Q ss_pred             EEEccCceEEeeccccC---------C--------ce-eEEEEcCCCCEEEEec------------------CCCcEEEE
Q 024868          138 IMHWPSLRIILDEPKAH---------K--------SV-LDMDFSLDSEFLATTS------------------TDGSARIW  181 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~~~---------~--------~v-~~~~~s~~~~~l~~~~------------------~d~~i~iw  181 (261)
                      -+|.++++.+.......         +        .+ ..+++.|....++...                  ..++|.-.
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            99999999887654210         0        01 2344455444444322                  12457778


Q ss_pred             EccCCcEEEEEee-cCCC-------ceEEEEEec-CCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          182 KTEDGVAWTFLTR-NSDE-------KIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       182 d~~~~~~~~~~~~-~~~~-------~v~~~~~~p-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      |.++|+....++. |++.       ...-+.+.. +|+.  .-.++.+..+|.++++|.++|+.+..
T Consensus       420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~--~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTT--VPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             eCCCCceEEEecccCCccccccccCCceEEeeecCCCcE--eeEEEEECCCCEEEEEECCCCCEEee
Confidence            8889998887765 3221       011122222 5532  11268889999999999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=96.93  E-value=0.26  Score=43.66  Aligned_cols=118  Identities=16%  Similarity=0.201  Sum_probs=73.9

Q ss_pred             CceEEEECC-CCCeEEEEecCCcEEEEEEeCCccc----cceeeeeCCCC----CCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868           65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATD----INLLAKKMPPL----QDAGPQKCLSFSVDGSRFAAGGVDGH  135 (261)
Q Consensus        65 ~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~----~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~  135 (261)
                      +...++|+| +.+.||+....|...||++......    ..........+    .....-..+.|.++-+.|+++ ....
T Consensus       147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~-~r~~  225 (765)
T PF10214_consen  147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC-NRSK  225 (765)
T ss_pred             ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE-cCCc
Confidence            577999999 5568999999999999999322111    11110001111    112344578898888888888 4566


Q ss_pred             EEEEEccCceEEeec--cccCCceeEEEEcCC--CCEEEEecCCCcEEEEEccC
Q 024868          136 LRIMHWPSLRIILDE--PKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTED  185 (261)
Q Consensus       136 i~~~d~~~~~~~~~~--~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~  185 (261)
                      +.++|+++......+  ......|..+.-+|+  +..++..  ...|...++..
T Consensus       226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            899999877653212  222347889988886  3333333  36677777765

These proteins are found in fungi.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.91  E-value=0.22  Score=42.41  Aligned_cols=193  Identities=18%  Similarity=0.191  Sum_probs=97.1

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-C-----cEEEEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-G-----GCKLFEV   92 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~i~~~   92 (261)
                      ..++++||..+.  ....-.+..||+.+..+..    ...++. ...-.+++.. ++...++|+.+ |     ++..||.
T Consensus       285 ~~l~~vGG~~~~--~~~~~~ve~yd~~~~~w~~----~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  285 GKLVAVGGYNRQ--GQSLRSVECYDPKTNEWSS----LAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CeEEEECCCCCC--CcccceeEEecCCcCcEee----cCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence            567778877651  1122256678888875521    111221 1222334433 45677888888 3     4566666


Q ss_pred             eCCccccceeeeeCCCCCCCCCeEEEEE-eeCCcEEEEeccCCe-----EEEEEccCceEEeeccc-cCCceeEEEE-cC
Q 024868           93 YGGATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDGH-----LRIMHWPSLRIILDEPK-AHKSVLDMDF-SL  164 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~-~~~~v~~~~~-s~  164 (261)
                      ...+-  ..    ...+... + ..... .-+|...++|+.||.     +..||..+.+-  .... .......... .-
T Consensus       357 ~~~~W--~~----~a~M~~~-R-~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W--~~va~m~~~r~~~gv~~~  426 (571)
T KOG4441|consen  357 RTNQW--TP----VAPMNTK-R-SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW--TPVAPMLTRRSGHGVAVL  426 (571)
T ss_pred             CCCce--ec----cCCccCc-c-ccceeEEECCEEEEEeccccccccccEEEecCCCCcc--cccCCCCcceeeeEEEEE
Confidence            65541  11    1111111 1 11122 237888899998864     77777665542  1111 1112222222 22


Q ss_pred             CCCEEEEecCCC------cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc-----EEEEEECCC
Q 024868          165 DSEFLATTSTDG------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----LLAVYDIST  233 (261)
Q Consensus       165 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~-----~i~~~d~~~  233 (261)
                      +|++.++|+.++      ++..||..+++....-.......-..++. -++..     .+.||.|+     ++..||.++
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~i-----YvvGG~~~~~~~~~VE~ydp~~  500 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKI-----YVVGGFDGTSALSSVERYDPET  500 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEE-----EEECCccCCCccceEEEEcCCC
Confidence            677778887654      57788888766433222211111122322 23443     25555554     477888876


Q ss_pred             Ce
Q 024868          234 WN  235 (261)
Q Consensus       234 ~~  235 (261)
                      .+
T Consensus       501 ~~  502 (571)
T KOG4441|consen  501 NQ  502 (571)
T ss_pred             Cc
Confidence            54

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.88  E-value=0.13  Score=43.78  Aligned_cols=113  Identities=13%  Similarity=0.175  Sum_probs=73.4

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEc
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHW  141 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~  141 (261)
                      ..+.-+.-+.-++..++-+...++.|||...+..      .....+...+.|.++.|..  +++.+++.+-.+.|.+|--
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l------E~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL------EYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEE------EEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            3455565666555444544456899999987763      1223345578899999964  8888888888999988853


Q ss_pred             cC-----c----eEEe--eccccC-CceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868          142 PS-----L----RIIL--DEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (261)
Q Consensus       142 ~~-----~----~~~~--~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~  184 (261)
                      ..     .    ..+.  .+..+. .+|.+..|.++|.+++.+  ++++.|+|-.
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence            21     1    1111  112223 368899999999877655  3678888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.85  E-value=0.23  Score=41.86  Aligned_cols=156  Identities=10%  Similarity=0.070  Sum_probs=90.5

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE-EEEeeCCcEEEEec------cCCeEEEEEccCceEE
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGG------VDGHLRIMHWPSLRII  147 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~------~d~~i~~~d~~~~~~~  147 (261)
                      +..++.++.++.+.-+|..+++...+....   .......+.+ ... -++. ++++.      .+|.|.-+|.++++.+
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~---~~~~~~~~tssP~v-~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNG---DYKAGYTITAAPLV-VKGK-VITGISGGEFGVRGYVTAYDAKTGKLV  194 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccc---cccccccccCCcEE-ECCE-EEEeecccccCCCcEEEEEECCCCcee
Confidence            346777788999999999888764432111   0000001111 111 1444 44432      2688999999999887


Q ss_pred             eeccccCC-------------------------------ce-eEEEEcCCCCEEEEecCC-----C-----------cEE
Q 024868          148 LDEPKAHK-------------------------------SV-LDMDFSLDSEFLATTSTD-----G-----------SAR  179 (261)
Q Consensus       148 ~~~~~~~~-------------------------------~v-~~~~~s~~~~~l~~~~~d-----~-----------~i~  179 (261)
                      ........                               .+ ..+++.|.-.+++.+..+     +           +|.
T Consensus       195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v  274 (527)
T TIGR03075       195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIV  274 (527)
T ss_pred             EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence            65432211                               11 134566655666655422     1           577


Q ss_pred             EEEccCCcEEEEEeecCCC--------ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          180 IWKTEDGVAWTFLTRNSDE--------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~--------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                      -.|+++|+....++..+..        ...-+....+|+.  .-+++.+..+|.+++.|.++|+.+
T Consensus       275 Ald~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~--~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       275 ARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKP--RKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcE--EEEEEEeCCCceEEEEECCCCcee
Confidence            7899999988877653221        1111222246662  112678999999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.79  E-value=0.061  Score=46.71  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=53.2

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCcc--------ccce------eeeeCCCCCCCCCeEEEEEeeC---CcEE
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------DINL------LAKKMPPLQDAGPQKCLSFSVD---GSRF  127 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--------~~~~------~~~~~~~~~~~~~v~~~~~s~~---~~~l  127 (261)
                      .|..+.++|+|+.++..+..| |.|..+...-.        ....      +............|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            588999999999999888776 77766643100        0000      0111111122457899999995   4788


Q ss_pred             EEeccCCeEEEEEccCc
Q 024868          128 AAGGVDGHLRIMHWPSL  144 (261)
Q Consensus       128 ~~~~~d~~i~~~d~~~~  144 (261)
                      ++-..|+++++||+...
T Consensus       165 ~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEecCCEEEEEecCCC
Confidence            88889999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.79  E-value=0.14  Score=38.60  Aligned_cols=138  Identities=20%  Similarity=0.189  Sum_probs=80.9

Q ss_pred             CceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE-cc
Q 024868           65 DPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH-WP  142 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d-~~  142 (261)
                      .+.+.+++++++.++... .++.-.+|-...+.....        ......+....|++++...++...+...+++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~--------~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP--------VLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee--------eccCCccccccccCCCCEEEEEcCCCceEEEEecC
Confidence            688999999999887665 222233443333332111        11223677789999987777766566566653 22


Q ss_pred             CceEE--e-eccccCCceeEEEEcCCCCEEEEec---CCCcEEEEEcc---CC------cEEEEEeecCCCceEEEEEec
Q 024868          143 SLRII--L-DEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTE---DG------VAWTFLTRNSDEKIELCRFSK  207 (261)
Q Consensus       143 ~~~~~--~-~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~iwd~~---~~------~~~~~~~~~~~~~v~~~~~~p  207 (261)
                      ++...  . ........|..+.+||||..++...   .++.|.+=-+.   .+      .+..... .....+..+.|.+
T Consensus        97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~  175 (253)
T PF10647_consen   97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSD  175 (253)
T ss_pred             CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecC
Confidence            33221  1 1111112799999999999887655   34667766543   23      1111111 1123588999999


Q ss_pred             CCCc
Q 024868          208 DGTK  211 (261)
Q Consensus       208 ~~~~  211 (261)
                      ++..
T Consensus       176 ~~~L  179 (253)
T PF10647_consen  176 DSTL  179 (253)
T ss_pred             CCEE
Confidence            9986

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.70  E-value=0.22  Score=39.39  Aligned_cols=152  Identities=16%  Similarity=0.172  Sum_probs=84.9

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~  142 (261)
                      .+.+..+.+.|++.+++++ ..|.+..- .+.+......     ........++.+.+.++++.++++ ..|.+.+=..+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~-----~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTP-----HQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEE-----eeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence            4568889999988766554 56644432 1222111111     111224578899999999887776 56766532233


Q ss_pred             CceEEeecccc----CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee--cCCCceEEEEEecCCCcceEEE
Q 024868          143 SLRIILDEPKA----HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPFLFC  216 (261)
Q Consensus       143 ~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~~~~~  216 (261)
                      .+..-......    ...+..+.+.|+++.++++ .+|.+. .....|+.-.....  ......+.+.|..+++.     
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-----  316 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-----  316 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCce-----
Confidence            33321111111    1357889999988766655 556544 34444443333321  11224777888777764     


Q ss_pred             EEeeCCCcEEEEEE
Q 024868          217 TVQRGDKALLAVYD  230 (261)
Q Consensus       217 ~~~~~~d~~i~~~d  230 (261)
                       ...+..|.|-.|+
T Consensus       317 -~~~G~~G~il~~~  329 (334)
T PRK13684        317 -FVLGQRGVLLRYV  329 (334)
T ss_pred             -EEECCCceEEEec
Confidence             5567778877665

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.67  E-value=0.089  Score=42.92  Aligned_cols=134  Identities=10%  Similarity=0.112  Sum_probs=76.2

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC--------eEEEEecCCcEEEEEEeCCccccceeeeeCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--------DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL  109 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  109 (261)
                      +++..|.+.+++      ...+.-|.+.  -+.|.|+.+        .|+ |-.+..|.-.|.+-..  .++...+....
T Consensus       491 kLykmDIErGkv------veeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g--NKi~v~esKdY  559 (776)
T COG5167         491 KLYKMDIERGKV------VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG--NKIKVVESKDY  559 (776)
T ss_pred             cceeeeccccee------eeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccC--Cceeeeeehhc
Confidence            778888877775      4455555443  567777532        233 3334334433433222  12111122222


Q ss_pred             CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868          110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (261)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~  184 (261)
                      .......+..-. ..-++++++..|.|++||--.......++.....|..+..+.+|+++++.+. ..+.+-|++
T Consensus       560 ~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         560 KTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            222222332222 3458999999999999994332232334455568999999999998887764 567777764

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.61  E-value=0.097  Score=42.07  Aligned_cols=131  Identities=12%  Similarity=0.214  Sum_probs=80.2

Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee----
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----  149 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~----  149 (261)
                      |.+..+.+...|.+.-|...........    .......++|.++.||+|.+.+|+--.+.+|.+++....+....    
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpi----Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~  107 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPI----SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE  107 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCc----eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH
Confidence            4444444455666888877665431111    11223467999999999999999999999999998743332211    


Q ss_pred             ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCc
Q 024868          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       150 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      .......|....|+.+ .-+|..+..| +-+|-+...+ .++..+.+. ..|.-..|.++-+.
T Consensus       108 ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~-~nvnWy~yc~et~v  167 (657)
T KOG2377|consen  108 CKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHN-LNVNWYMYCPETAV  167 (657)
T ss_pred             hccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcc-cCccEEEEccccce
Confidence            1122235899999865 5566555444 6666654332 233333333 34777888888775

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.56  E-value=0.24  Score=38.29  Aligned_cols=140  Identities=11%  Similarity=0.076  Sum_probs=68.4

Q ss_pred             CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcEEE
Q 024868          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWT  190 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~  190 (261)
                      .+.+..+.-++||++++++.......-||--...-..........|..|.|+|++.+.+.+ ..|.++.=+.. ..+.-.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            3678888889999999998655555667643221111222234579999999998876655 77888877622 122111


Q ss_pred             E--Eee-cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee---eccCcCeeEEEEeeCCCEE
Q 024868          191 F--LTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       191 ~--~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~dg~~l  259 (261)
                      .  ... .....+..++|.++++.     .+.+ ..|.+ +.....|+.-+..   ......+..+.|.++.+-+
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~-----wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf  290 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEI-----WAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF  290 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-E-----EEEE-STT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred             cccCCcccCceeeEEEEecCCCCE-----EEEe-CCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence            1  111 11223788999998775     2444 44433 3444445433222   2234567788887665543

>PHA02713 hypothetical protein; Provisional

Probab=96.56  E-value=0.4  Score=40.81  Aligned_cols=123  Identities=14%  Similarity=0.139  Sum_probs=58.5

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC------CcEEEEEEeCCccccceeeeeCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQD  111 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~  111 (261)
                      .++.||+.+..+...+    .++..... .+++. -++..++.|+.+      ..+..||..+..-  .    ....+..
T Consensus       273 ~v~~yd~~~~~W~~l~----~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~----~~~~m~~  340 (557)
T PHA02713        273 CILVYNINTMEYSVIS----TIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--V----ELPPMIK  340 (557)
T ss_pred             CEEEEeCCCCeEEECC----CCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--e----eCCCCcc
Confidence            4678999887752211    11111111 12222 256666777643      2466677665531  1    1222221


Q ss_pred             CCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccCceEEe--eccccCCceeEEEEcCCCCEEEEecCC
Q 024868          112 AGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTD  175 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d  175 (261)
                      . ........-+|+..+.|+.++     .+..||..+.+-..  .+.........+  .-+|++.+.|+.+
T Consensus       341 ~-R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~  408 (557)
T PHA02713        341 N-RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRT  408 (557)
T ss_pred             h-hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCC
Confidence            1 111122234688888888654     47889987654221  111111111122  2267777777754

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.55  E-value=0.00018  Score=57.18  Aligned_cols=140  Identities=12%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEE
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMH  140 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d  140 (261)
                      +-.......|.|.+..++.++.+..+..||-.....         ......+....++|..++..++. +-..+.+++||
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~---------le~n~tg~aldm~wDkegdvlavlAek~~piylwd  103 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI---------LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWD  103 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhhccee---------cccCCchhHhhhhhccccchhhhhhhcCCCeeech
Confidence            334455677888887788888888888898765442         22223455667889888766544 44778899999


Q ss_pred             ccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      +.+......-.+....-.-+.|++....++.+...+.+.|++..+.+.+...-.|.. .+.+++|.+.+..
T Consensus       104 ~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R-Rgtq~av~lEd~v  173 (615)
T KOG2247|consen  104 VNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR-RGTQIAVTLEDYV  173 (615)
T ss_pred             hhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc-ceeEEEeccccee
Confidence            976554222222222222377999888899998889999999887766555443444 5888889888764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.55  E-value=0.018  Score=29.74  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=26.1

Q ss_pred             CceeEEEEcCCC---CEEEEecCCCcEEEEEccC
Q 024868          155 KSVLDMDFSLDS---EFLATTSTDGSARIWKTED  185 (261)
Q Consensus       155 ~~v~~~~~s~~~---~~l~~~~~d~~i~iwd~~~  185 (261)
                      +.++++.|||++   .+|+.+-..+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368999999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.47  E-value=0.24  Score=37.18  Aligned_cols=178  Identities=10%  Similarity=0.046  Sum_probs=105.5

Q ss_pred             ceEEEECCCCCeEEEEecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868           66 PMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        66 v~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~  143 (261)
                      ...+.|..+|.++-+.+..|  .|+.+|+.+++.....      .++..---..++.. +++.....-.++...+||..+
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~------~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~t  119 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV------PLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNT  119 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE------E-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTT
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE------ECCccccceeEEEE-CCEEEEEEecCCeEEEEcccc
Confidence            45788877887777777766  6888888887642211      11111122334443 233334444889999999988


Q ss_pred             ceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-C---ceEEEEEecCCCcceEEEEEe
Q 024868          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-E---KIELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       144 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~---~v~~~~~~p~~~~~~~~~~~~  219 (261)
                      .+.+..+. ..+.=+.++  .|++.|+.+.....++++|..+.+....+..... .   .++.+.|- +|..     .+-
T Consensus       120 l~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I-----yAN  190 (264)
T PF05096_consen  120 LKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI-----YAN  190 (264)
T ss_dssp             TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE-----EEE
T ss_pred             ceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE-----EEE
Confidence            87765443 233445565  5677777776678899999988887776654321 1   35667775 5553     233


Q ss_pred             eCCCcEEEEEECCCCeEEeeeecc---------------CcCeeEEEEeeCCCEE
Q 024868          220 RGDKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYL  259 (261)
Q Consensus       220 ~~~d~~i~~~d~~~~~~~~~~~~~---------------~~~v~~~~~s~dg~~l  259 (261)
                      .=....|...|..+|+.+..+...               ..-.+.+++.|....|
T Consensus       191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l  245 (264)
T PF05096_consen  191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL  245 (264)
T ss_dssp             ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred             eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence            344557889999999876544311               1346889999876654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK10115 protease 2; Provisional

Probab=96.42  E-value=0.58  Score=40.97  Aligned_cols=110  Identities=7%  Similarity=0.010  Sum_probs=65.2

Q ss_pred             CceEEEECCCCCeEEEEecC-----CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC------
Q 024868           65 DPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------  133 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------  133 (261)
                      .+..+.++|||++|+.+...     -.|++.|+.++....       ..+... . ..++|++|++.|+....+      
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-------~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~  198 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-------ELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLP  198 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-------ccccCc-c-eEEEEeeCCCEEEEEEecCCCCCC
Confidence            46678899999998876432     357788887664211       111111 1 459999999877766432      


Q ss_pred             CeEEEEEccCc--eEEeeccccCCcee-EEEEcCCCCEEEEecC---CCcEEEEEc
Q 024868          134 GHLRIMHWPSL--RIILDEPKAHKSVL-DMDFSLDSEFLATTST---DGSARIWKT  183 (261)
Q Consensus       134 ~~i~~~d~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---d~~i~iwd~  183 (261)
                      ..|+.+++.++  +....+........ ....+.++++++..+.   ++.+.+++.
T Consensus       199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            35788888877  22222222222333 3333448887654332   457888885

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.34  E-value=0.37  Score=37.95  Aligned_cols=148  Identities=16%  Similarity=0.130  Sum_probs=84.7

Q ss_pred             CCCeEEEEEeeCCcEEEEeccCCe------EEEEEccC--c--eEE-----eeccccCC--------ceeEEEEcCCCCE
Q 024868          112 AGPQKCLSFSVDGSRFAAGGVDGH------LRIMHWPS--L--RII-----LDEPKAHK--------SVLDMDFSLDSEF  168 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d~~------i~~~d~~~--~--~~~-----~~~~~~~~--------~v~~~~~s~~~~~  168 (261)
                      -+.+..+.+.|++..+++.+.+|.      ++.+++..  +  ..+     ..+....+        ...++++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788899864444555556666      55555443  0  000     01111111        2457888788888


Q ss_pred             EEEecCC------CcEEEEEccCCcEEEEEee--------------cCCCceEEEEEecCCCcceEEEEEeeCCC-----
Q 024868          169 LATTSTD------GSARIWKTEDGVAWTFLTR--------------NSDEKIELCRFSKDGTKPFLFCTVQRGDK-----  223 (261)
Q Consensus       169 l~~~~~d------~~i~iwd~~~~~~~~~~~~--------------~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----  223 (261)
                      +++.-.+      ..|+.++.. |+.+..+..              ..+....+++++|+|+.+|.+.-..-..|     
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            8887777      788888876 665544421              12334789999999996443211111112     


Q ss_pred             ------cEEEEEECCC-CeEEe--eeec-------cCcCeeEEEEeeCCCEEe
Q 024868          224 ------ALLAVYDIST-WNKIG--HKRL-------LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       224 ------~~i~~~d~~~-~~~~~--~~~~-------~~~~v~~~~~s~dg~~la  260 (261)
                            -.|..||..+ ++...  .+..       ....++.+.+-+|+++|+
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence                  2345566554 22221  1222       346789999999999876

>PHA02790 Kelch-like protein; Provisional

Probab=96.33  E-value=0.51  Score=39.40  Aligned_cols=192  Identities=8%  Similarity=0.001  Sum_probs=88.9

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC--CcEEEEEEeCCc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGA   96 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~~~~~~~   96 (261)
                      ..++++||.++.   ...-.++.||+.+..+...+    .+.........+.  -++...+.|+.+  ..+..||...+.
T Consensus       272 ~~lyviGG~~~~---~~~~~v~~Ydp~~~~W~~~~----~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~  342 (480)
T PHA02790        272 EVVYLIGGWMNN---EIHNNAIAVNYISNNWIPIP----PMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAA  342 (480)
T ss_pred             CEEEEEcCCCCC---CcCCeEEEEECCCCEEEECC----CCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCe
Confidence            446677765432   11225788999887653221    1111111122222  367777777754  346667654432


Q ss_pred             cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC---eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec
Q 024868           97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS  173 (261)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  173 (261)
                      -  .    ....+.... .......-+|+..+.|+.++   .+..||..+.+-..........-......-++++.+.| 
T Consensus       343 W--~----~~~~l~~~r-~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G-  414 (480)
T PHA02790        343 W--V----NMPSLLKPR-CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG-  414 (480)
T ss_pred             E--E----ECCCCCCCC-cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC-
Confidence            1  1    122222111 11122234788888887543   46778876554321111111111111223356666666 


Q ss_pred             CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCCCe
Q 024868          174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWN  235 (261)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~  235 (261)
                        |.+.+||.++++-...-.......-.+++ .-+|+. |    +.||.+     ..+..||..+++
T Consensus       415 --G~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~I-Y----viGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        415 --RNAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKL-L----LIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             --CceEEecCCCCcEeEcCCCCCCccccEEE-EECCEE-E----EECCcCCCcccceEEEEECCCCe
Confidence              35778998776543322111111011222 235554 2    444432     357788877654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.32  E-value=0.38  Score=37.88  Aligned_cols=147  Identities=18%  Similarity=0.204  Sum_probs=82.5

Q ss_pred             CCceEEEECCCCCeEEEEecCCc------EEEEEEeCCcc-ccceeeeeCCCCCC-C--------CCeEEEEEeeCCcEE
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGG------CKLFEVYGGAT-DINLLAKKMPPLQD-A--------GPQKCLSFSVDGSRF  127 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~------i~i~~~~~~~~-~~~~~~~~~~~~~~-~--------~~v~~~~~s~~~~~l  127 (261)
                      +.+..+.+.+++..+++.+++|.      ++.+++..... ...........+.. .        -...++++.++|.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            56788999976666766777777      66666654111 00000000001111 1        134578887788877


Q ss_pred             EEeccC------CeEEEEEccCceEEeec---------------cccCCceeEEEEcCCCCEEEEecC-----CC--c--
Q 024868          128 AAGGVD------GHLRIMHWPSLRIILDE---------------PKAHKSVLDMDFSLDSEFLATTST-----DG--S--  177 (261)
Q Consensus       128 ~~~~~d------~~i~~~d~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~-----d~--~--  177 (261)
                      ++.-.+      ..|+.++.. +.....+               ...+....+++++|+|+.|+++..     |+  .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            776555      678777754 4432221               112346889999999996655433     22  1  


Q ss_pred             -----EEE--EEccC-CcEEEEE--eec------CCCceEEEEEecCCCc
Q 024868          178 -----ARI--WKTED-GVAWTFL--TRN------SDEKIELCRFSKDGTK  211 (261)
Q Consensus       178 -----i~i--wd~~~-~~~~~~~--~~~------~~~~v~~~~~~p~~~~  211 (261)
                           +++  ||..+ ++....+  ...      ....+..+.+.++++.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l  228 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL  228 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence                 444  45444 3233322  211      2345889999999996

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.26  E-value=0.76  Score=40.76  Aligned_cols=142  Identities=11%  Similarity=0.233  Sum_probs=80.7

Q ss_pred             CCCeEEEEEeeCCcEEEEecc-----------C---CeEEEEEccCceEEeecccc-CC---ceeEEEEcCC-CCEEEEe
Q 024868          112 AGPQKCLSFSVDGSRFAAGGV-----------D---GHLRIMHWPSLRIILDEPKA-HK---SVLDMDFSLD-SEFLATT  172 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~-----------d---~~i~~~d~~~~~~~~~~~~~-~~---~v~~~~~s~~-~~~l~~~  172 (261)
                      ......+++.+....+++.+.           .   ..++++|-++-+......-. ..   .+.++.|..| +.+++.|
T Consensus       714 ~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVG  793 (1096)
T KOG1897|consen  714 GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVG  793 (1096)
T ss_pred             CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEE
Confidence            445566677664444444331           1   13667776665544322211 12   3555568877 6677776


Q ss_pred             cC----------CCcEEEEEccCCcEEEEEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          173 ST----------DGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       173 ~~----------d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      +.          .|.|.+|.+..++.++....+ -.+.+.++.- -+|++     +  ++-+..|++|+..+.+.++...
T Consensus       794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkl-----l--A~In~~vrLye~t~~~eLr~e~  865 (1096)
T KOG1897|consen  794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKL-----L--AGINQSVRLYEWTTERELRIEC  865 (1096)
T ss_pred             EEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeE-----E--EecCcEEEEEEccccceehhhh
Confidence            53          478888888774444333222 1223444432 35664     2  3345689999998886665555


Q ss_pred             ccCcCeeEEEEeeCCCEEeC
Q 024868          242 LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       242 ~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+..++..+...-.|..+|+
T Consensus       866 ~~~~~~~aL~l~v~gdeI~V  885 (1096)
T KOG1897|consen  866 NISNPIIALDLQVKGDEIAV  885 (1096)
T ss_pred             cccCCeEEEEEEecCcEEEE
Confidence            66667777777776666653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.25  E-value=0.022  Score=29.43  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=25.7

Q ss_pred             CCeEEEEEeeCC---cEEEEeccCCeEEEEEccC
Q 024868          113 GPQKCLSFSVDG---SRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus       113 ~~v~~~~~s~~~---~~l~~~~~d~~i~~~d~~~  143 (261)
                      +.+++++|||+.   .+|+.+-..+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999854   5888887889999999985

It contains a characteristic DLL sequence motif.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=96.16  E-value=0.11  Score=41.85  Aligned_cols=162  Identities=12%  Similarity=0.048  Sum_probs=87.7

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE-EEEEeeCCcEEEEeccCCeEEEE-Ecc
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIM-HWP  142 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~~~-d~~  142 (261)
                      ++..+-..|||+.+..-+. .++.++++.+.....+.+...... .....|. .+..-..|.-+++++.||-|.-| |.+
T Consensus       222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg-~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr  299 (733)
T COG4590         222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG-DSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR  299 (733)
T ss_pred             chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC-chHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence            3666778899998877654 668999987765322211000000 0001111 11122245567778889988777 444


Q ss_pred             CceEE-----eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE
Q 024868          143 SLRII-----LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (261)
Q Consensus       143 ~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~  217 (261)
                      .+...     +.+.-...++..+.-..+.+-+++-+.+|.+.++.....+.+-.-.. .. .+.-+++||.+.+      
T Consensus       300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~-~~~~~~~Sp~~~~------  371 (733)
T COG4590         300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQ-APQLVAMSPNQAY------  371 (733)
T ss_pred             cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hc-CcceeeeCcccch------
Confidence            33221     11111111233332222344577777788888877554443322221 22 3667899999998      


Q ss_pred             EeeCCCcEEEEEECCCCeE
Q 024868          218 VQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~~~  236 (261)
                      ....+.|.++++.+++..+
T Consensus       372 Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         372 LLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             heeecCCceEEEEecCCCC
Confidence            3345567899999876543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.14  E-value=0.22  Score=40.74  Aligned_cols=151  Identities=12%  Similarity=0.100  Sum_probs=77.9

Q ss_pred             ceEEEEC-CCCCeEE-EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-------EEEEeccCCeE
Q 024868           66 PMTIAVN-PSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-------RFAAGGVDGHL  136 (261)
Q Consensus        66 v~~~~~~-~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~d~~i  136 (261)
                      +..+-.+ .+...|. .++....++-.|++.++.        .....-+..+ -+.|.|+.+       .-++|-.+..|
T Consensus       469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkv--------veeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~sv  539 (776)
T COG5167         469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKV--------VEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSV  539 (776)
T ss_pred             hhhceeecCCcceEEecCCCcccceeeeccccee--------eeEeecCCcc-eeecCCchhHHhcCccceEEeecccce
Confidence            3434443 3444443 344445677777776654        1111112233 456666432       12334455556


Q ss_pred             EEEEccCceEEeeccccCCceeEEEEc----CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868          137 RIMHWPSLRIILDEPKAHKSVLDMDFS----LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      .-.|.+-................-.||    ...-++|.++..|-|++||-- |...++.....+..|-.+..+.+|+++
T Consensus       540 FrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~i  618 (776)
T COG5167         540 FRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHI  618 (776)
T ss_pred             EEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEE
Confidence            556655322111112222222222232    234589999999999999954 333333333344468889999999983


Q ss_pred             eEEEEEeeCCCcEEEEEECC
Q 024868          213 FLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~  232 (261)
                           ++.+ ...+.+-|++
T Consensus       619 -----laTC-k~yllL~d~~  632 (776)
T COG5167         619 -----LATC-KNYLLLTDVP  632 (776)
T ss_pred             -----EEee-cceEEEEecc
Confidence                 2222 2356666654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.11  E-value=0.21  Score=39.43  Aligned_cols=108  Identities=12%  Similarity=0.171  Sum_probs=55.7

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC----CcEEEEeccC-------
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGGVD-------  133 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d-------  133 (261)
                      ....++|.|||+.+++ ...|.|++++ ..+......................++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4678999999876664 6699999999 3333211111111112233567899999994    4333333321       


Q ss_pred             -CeEEEEEccCc-------eEEeec-cc---cCCceeEEEEcCCCCEEEEecC
Q 024868          134 -GHLRIMHWPSL-------RIILDE-PK---AHKSVLDMDFSLDSEFLATTST  174 (261)
Q Consensus       134 -~~i~~~d~~~~-------~~~~~~-~~---~~~~v~~~~~s~~~~~l~~~~~  174 (261)
                       ..|.-|.....       +.+... ..   ....-..+.|.|||.+.++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             13443443322       111111 11   1124567999999977666554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK13684 Ycf48-like protein; Provisional

Probab=96.05  E-value=0.55  Score=37.15  Aligned_cols=139  Identities=15%  Similarity=0.131  Sum_probs=76.9

Q ss_pred             CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc-eEEeecc-ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE
Q 024868          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~  189 (261)
                      ...+..+.+.|++.+++++ ..|.+..- .+.+ +.-.... .....+.++.+.|+++.++++ ..|.+.+=..+.|+.-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            4568889999998777666 56655432 1222 2211122 223468999999999877765 4565543233444332


Q ss_pred             EEEeec---CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee---eccCcCeeEEEEeeCCCEEe
Q 024868          190 TFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       190 ~~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~dg~~la  260 (261)
                      .....+   ....+.++.+.|+++.      ...+.+|.+.. ....++.-...   .........+.|..+++.++
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~------~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEI------WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV  318 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCE------EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence            222211   1224778889998774      44556675543 33434332222   12223567777777766655

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.05  E-value=0.43  Score=35.91  Aligned_cols=118  Identities=14%  Similarity=0.163  Sum_probs=76.3

Q ss_pred             CeEEEEEeeCCcEEEEeccCC--eEEEEEccCceEEeeccccCC-ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE
Q 024868          114 PQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~  190 (261)
                      -...+.|..+|.++-+.+.-|  .|+.+|+.+++......-... --..++... ++.....=.++...+||..+.+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence            346788888898888887666  699999999886544332222 234455543 3334444468999999999999998


Q ss_pred             EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       191 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      ++.-...  =+.++  .||+.     ++.+.....|+++|..+.+....+.
T Consensus       125 ~~~y~~E--GWGLt--~dg~~-----Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  125 TFPYPGE--GWGLT--SDGKR-----LIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             EEE-SSS----EEE--ECSSC-----EEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             EEecCCc--ceEEE--cCCCE-----EEEECCccceEEECCcccceEEEEE
Confidence            8875543  46666  56776     3444555689999998877655444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.01  E-value=0.65  Score=37.65  Aligned_cols=106  Identities=6%  Similarity=0.019  Sum_probs=69.5

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~  141 (261)
                      ..++|.++.|++|.+.||+--.+.+|.+++....+......   .........|.+..|+.. .-+|.....| +.+|..
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~---~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT---QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQV  139 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH---HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence            35689999999999999999999999999985544311111   111112345888999865 5666664555 677766


Q ss_pred             cCceE-EeeccccCCceeEEEEcCCCCEEEEe
Q 024868          142 PSLRI-ILDEPKAHKSVLDMDFSLDSEFLATT  172 (261)
Q Consensus       142 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~  172 (261)
                      ...+. ++....+.-.|.-..|.++.+.++.+
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            54443 23334444568888888887755433

>PHA03098 kelch-like protein; Provisional

Probab=95.99  E-value=0.55  Score=39.80  Aligned_cols=151  Identities=11%  Similarity=0.083  Sum_probs=72.0

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC------CcEEEEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEV   92 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~~~   92 (261)
                      +.+.+.||.++..   ..-.++.||+.+..+...+.    ++...... +++ .-+++.++.|+.+      ..+..||.
T Consensus       343 ~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~----lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~  413 (534)
T PHA03098        343 NRIYVIGGIYNSI---SLNTVESWKPGESKWREEPP----LIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSL  413 (534)
T ss_pred             CEEEEEeCCCCCE---ecceEEEEcCCCCceeeCCC----cCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeC
Confidence            4566677655311   11257788988877633211    11111111 122 2256666776632      35778887


Q ss_pred             eCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--------CeEEEEEccCceEEee--ccccCCceeEEEE
Q 024868           93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWPSLRIILD--EPKAHKSVLDMDF  162 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~  162 (261)
                      .+..-  ..    ....+.... ...+...+++.++.|+.+        ..+..||..+.+-...  ..........+. 
T Consensus       414 ~t~~W--~~----~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-  485 (534)
T PHA03098        414 NTNKW--SK----GSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-  485 (534)
T ss_pred             CCCee--ee----cCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-
Confidence            66542  11    111111111 112233467777777643        2378888876543211  111111111222 


Q ss_pred             cCCCCEEEEecCC-----CcEEEEEccCCc
Q 024868          163 SLDSEFLATTSTD-----GSARIWKTEDGV  187 (261)
Q Consensus       163 s~~~~~l~~~~~d-----~~i~iwd~~~~~  187 (261)
                       -+++.++.|+.+     +.+.+||..+.+
T Consensus       486 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        486 -FNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             -ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence             267777777654     357778877654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.95  E-value=0.69  Score=37.46  Aligned_cols=146  Identities=18%  Similarity=0.177  Sum_probs=80.9

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEE-EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc
Q 024868           66 PMTIAVNPSGDDFVCSTTNGGCKL-FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (261)
Q Consensus        66 v~~~~~~~~~~~l~~~~~dg~i~i-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  144 (261)
                      ...+..++++..++.+ ..|.+.. ||-....  ..     .........+..+.|.+++..++++ ..|.+.. ....+
T Consensus       241 f~~v~~~~dG~~~~vg-~~G~~~~s~d~G~~~--W~-----~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G  310 (398)
T PLN00033        241 FSTVNRSPDGDYVAVS-SRGNFYLTWEPGQPY--WQ-----PHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTG  310 (398)
T ss_pred             eeeEEEcCCCCEEEEE-CCccEEEecCCCCcc--eE-----EecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCC
Confidence            3445667777766665 4443332 3221110  00     1112234567889999999888777 5666543 33333


Q ss_pred             e-----EEeeccc--cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe--ecCCCceEEEEEecCCCcceEE
Q 024868          145 R-----IILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       145 ~-----~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      +     .......  ....+.++.|.+++..+++| .+|.+.... ..|+.-....  .......+.+.|.++++.    
T Consensus       311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g----  384 (398)
T PLN00033        311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKG----  384 (398)
T ss_pred             CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCce----
Confidence            2     1111111  11258899999888876666 457555543 4454433322  112335789999887775    


Q ss_pred             EEEeeCCCcEEEEE
Q 024868          216 CTVQRGDKALLAVY  229 (261)
Q Consensus       216 ~~~~~~~d~~i~~~  229 (261)
                        ...+.+|.|.-|
T Consensus       385 --~~~G~~G~il~~  396 (398)
T PLN00033        385 --FVLGNDGVLLRY  396 (398)
T ss_pred             --EEEeCCcEEEEe
Confidence              566777876554

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.77  E-value=0.32  Score=32.29  Aligned_cols=121  Identities=10%  Similarity=-0.005  Sum_probs=70.9

Q ss_pred             EEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-----CCcEEEEeccCCeEEEEEccC
Q 024868           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        69 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~~~d~~~  143 (261)
                      -.|......|++++..|+|.|++.................+.-...|++++-.+     +...|+.| ....+..||+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence            345555567888888888999987654321111112233333456677776544     23466666 566799999987


Q ss_pred             ceEEeeccccCCceeEEEEcC---CCCEEEEecCCCcEEEEEccCCcEEEE
Q 024868          144 LRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVAWTF  191 (261)
Q Consensus       144 ~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~iwd~~~~~~~~~  191 (261)
                      ...+.. ..-...+.++.+-.   ...-++..+.+..|+-||....+...+
T Consensus        83 N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   83 NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             Cchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            766433 33345666666632   223355555567888888665444433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.68  E-value=1.4  Score=38.98  Aligned_cols=118  Identities=12%  Similarity=0.066  Sum_probs=68.1

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEe----------------eCCcEEEEeccCCeEE
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFS----------------VDGSRFAAGGVDGHLR  137 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s----------------~~~~~l~~~~~d~~i~  137 (261)
                      +..|+.++.++.|+-.|..+++...+......... .....++.+.+-                ..+..|+.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            45666777778888888887775443321111000 000112223321                1234777888999999


Q ss_pred             EEEccCceEEeeccccCCce-------------eEEEEcC--CCCEEEEecC----------CCcEEEEEccCCcEEEEE
Q 024868          138 IMHWPSLRIILDEPKAHKSV-------------LDMDFSL--DSEFLATTST----------DGSARIWKTEDGVAWTFL  192 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~v-------------~~~~~s~--~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~  192 (261)
                      -.|.++++....+.. ++.+             ..+.-+|  .+..++.++.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998765422 1111             1122223  2334555532          578999999999998877


Q ss_pred             e
Q 024868          193 T  193 (261)
Q Consensus       193 ~  193 (261)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            5

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.65  E-value=0.28  Score=36.12  Aligned_cols=70  Identities=14%  Similarity=0.179  Sum_probs=51.5

Q ss_pred             EeeCCcEEEEeccCCeEEEEEccCceEEeec------c--------ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC
Q 024868          120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDE------P--------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (261)
Q Consensus       120 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~  185 (261)
                      +..+++++++.+.+|.+++||+.+++.....      .        .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4567889999999999999999988764332      1        1334688888898888777765 57889998765


Q ss_pred             CcEEE
Q 024868          186 GVAWT  190 (261)
Q Consensus       186 ~~~~~  190 (261)
                      +.-+.
T Consensus        97 ~~W~~  101 (219)
T PF07569_consen   97 GCWIR  101 (219)
T ss_pred             ceeEE
Confidence            54433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.58  E-value=0.9  Score=39.82  Aligned_cols=73  Identities=15%  Similarity=0.180  Sum_probs=50.6

Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccC----------ceE--Eee-c------c--ccCCceeEEEEcCC---CCE
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS----------LRI--ILD-E------P--KAHKSVLDMDFSLD---SEF  168 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~----------~~~--~~~-~------~--~~~~~v~~~~~s~~---~~~  168 (261)
                      -.|..+.+||+|++++..+..| |.|..+..          ++.  ..+ .      .  .....|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4688899999999999988766 44444432          111  101 0      1  12236889999996   578


Q ss_pred             EEEecCCCcEEEEEccCC
Q 024868          169 LATTSTDGSARIWKTEDG  186 (261)
Q Consensus       169 l~~~~~d~~i~iwd~~~~  186 (261)
                      |+.-+.|+.+++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            888889999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.52  E-value=0.33  Score=39.32  Aligned_cols=83  Identities=10%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCc-eeEEEEc-CC----------------CCE-EEEec
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFS-LD----------------SEF-LATTS  173 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s-~~----------------~~~-l~~~~  173 (261)
                      ..+.++..+|++++.++...-|.|.++|+.++..++-.++-.+. +.-+... +.                ..+ ++-+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            45788999999999999888899999999887765444333221 1111111 10                112 33455


Q ss_pred             CCCcEEEEEccCCcEEEEEeec
Q 024868          174 TDGSARIWKTEDGVAWTFLTRN  195 (261)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~~~~  195 (261)
                      .-|.|.||++++|..+..+...
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEeC
Confidence            6789999999999888777644

>PHA02790 Kelch-like protein; Provisional

Probab=95.44  E-value=1.3  Score=37.03  Aligned_cols=144  Identities=10%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC---cEEEEEEeCCc
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG---GCKLFEVYGGA   96 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~~~~~~~   96 (261)
                      .+.++||.++..      .+..||+....+...+    .++........+.  -+|+..+.|+.++   .+..||..+..
T Consensus       320 ~iYviGG~~~~~------sve~ydp~~n~W~~~~----~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~  387 (480)
T PHA02790        320 KLYVVGGLPNPT------SVERWFHGDAAWVNMP----SLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ  387 (480)
T ss_pred             EEEEECCcCCCC------ceEEEECCCCeEEECC----CCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE
Confidence            455666643321      4677888776652211    1221111122222  2677777777553   45667765543


Q ss_pred             cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe--eccccCCceeEEEEcCCCCEEEEecC
Q 024868           97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTST  174 (261)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~  174 (261)
                      -  ..    ...+..... ...+..-+++..+.|+   .+..||..+.+-..  .+....... +++ --+|+..+.|+.
T Consensus       388 W--~~----~~~m~~~r~-~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~  455 (480)
T PHA02790        388 W--QF----GPSTYYPHY-KSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGF  455 (480)
T ss_pred             E--Ee----CCCCCCccc-cceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCc
Confidence            2  11    111111111 1122234677667664   46778876654321  111111112 222 226777777775


Q ss_pred             C-----CcEEEEEccCCc
Q 024868          175 D-----GSARIWKTEDGV  187 (261)
Q Consensus       175 d-----~~i~iwd~~~~~  187 (261)
                      +     ..+..||..+++
T Consensus       456 ~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        456 YRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCCcccceEEEEECCCCe
Confidence            4     235555555443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.38  E-value=0.11  Score=38.24  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=49.4

Q ss_pred             ECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC--------CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868           71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL--------QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (261)
Q Consensus        71 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~  142 (261)
                      +..++++|++.+.+|.+++||+...+....... ....+        .....|..+.++.+|.-+++- .+|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S-i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS-IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc-HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence            345788899999999999999998775332210 00111        234678888888888877766 46778888864


Q ss_pred             Cc
Q 024868          143 SL  144 (261)
Q Consensus       143 ~~  144 (261)
                      -+
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            33

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.35  E-value=1.1  Score=35.77  Aligned_cols=196  Identities=14%  Similarity=0.180  Sum_probs=106.0

Q ss_pred             CcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC----CCCCe--EEEEec-C---Cc
Q 024868           17 ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN----PSGDD--FVCSTT-N---GG   86 (261)
Q Consensus        17 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~~-d---g~   86 (261)
                      ....+++....++        -++.||.+...+      . .+.  .+.+..+..-    -+|+.  |+.++. +   .+
T Consensus        66 p~kSlIigTdK~~--------GL~VYdL~Gk~l------q-~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~  128 (381)
T PF02333_consen   66 PAKSLIIGTDKKG--------GLYVYDLDGKEL------Q-SLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNS  128 (381)
T ss_dssp             GGG-EEEEEETTT--------EEEEEETTS-EE------E-EE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-E
T ss_pred             cccceEEEEeCCC--------CEEEEcCCCcEE------E-eec--CCCcceeeeecceecCCceEEEEEEecCcCCCCe
Confidence            3456777666666        688899988775      1 222  2333333331    13443  444443 2   46


Q ss_pred             EEEEEEeCCccccceeeeeCCC-CCCCCCeEEEEEe--e-CCc-EEEEeccCCeEEEEEcc---Cc----eEEeeccccC
Q 024868           87 CKLFEVYGGATDINLLAKKMPP-LQDAGPQKCLSFS--V-DGS-RFAAGGVDGHLRIMHWP---SL----RIILDEPKAH  154 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s--~-~~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~  154 (261)
                      |++|.+.........+...... ......++.+++-  | +|. +++....+|.+..|.+.   ++    +.+++ +...
T Consensus       129 l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~-f~~~  207 (381)
T PF02333_consen  129 LRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVRE-FKVG  207 (381)
T ss_dssp             EEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEE-EE-S
T ss_pred             EEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEE-ecCC
Confidence            9999997533211111110001 1122456777764  3 455 45556688988888764   22    22333 3344


Q ss_pred             CceeEEEEcCCCCEEEEecCCCcEEEEEccC-----CcEEEEEee-cCCCceEEEEEec--CCCcceEEEEEeeCCCcEE
Q 024868          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTR-NSDEKIELCRFSK--DGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~-~~~~~v~~~~~~p--~~~~~~~~~~~~~~~d~~i  226 (261)
                      +.+..+........|+.+-.+.-|.-|+.+.     ++.+..... +....+..++.-.  +++- ||  +++...+++.
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~g-YL--ivSsQG~~sf  284 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKG-YL--IVSSQGDNSF  284 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-E-EE--EEEEGGGTEE
T ss_pred             CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCe-EE--EEEcCCCCeE
Confidence            5788999988888999998888888888762     222222221 1223477777753  4554 33  5777788899


Q ss_pred             EEEECCC
Q 024868          227 AVYDIST  233 (261)
Q Consensus       227 ~~~d~~~  233 (261)
                      .+||.+.
T Consensus       285 ~Vy~r~~  291 (381)
T PF02333_consen  285 AVYDREG  291 (381)
T ss_dssp             EEEESST
T ss_pred             EEEecCC
Confidence            9999875

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.19  E-value=1.2  Score=35.19  Aligned_cols=234  Identities=16%  Similarity=0.162  Sum_probs=108.7

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEE--eeecCCCCCceEEEECCC----CCeEEE
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT--YVFDESEGDPMTIAVNPS----GDDFVC   80 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~----~~~l~~   80 (261)
                      ...++|.|+   ..++++ ...|        +|+.++.+...  ......  ............++++|+    +...++
T Consensus         4 P~~~a~~pd---G~l~v~-e~~G--------~i~~~~~~g~~--~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~   69 (331)
T PF07995_consen    4 PRSMAFLPD---GRLLVA-ERSG--------RIWVVDKDGSL--KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVY   69 (331)
T ss_dssp             EEEEEEETT---SCEEEE-ETTT--------EEEEEETTTEE--CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEE
T ss_pred             ceEEEEeCC---CcEEEE-eCCc--------eEEEEeCCCcC--cceecccccccccccCCcccceeccccCCCCEEEEE
Confidence            357899986   445554 4477        89988843332  111111  122334457899999994    333333


Q ss_pred             EecC--------CcEEEEEEeCCcc----ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-------------e
Q 024868           81 STTN--------GGCKLFEVYGGAT----DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-------------H  135 (261)
Q Consensus        81 ~~~d--------g~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-------------~  135 (261)
                      .+..        ..|.-|.......    ...++............-..|.|.|||.+.++.+..+             .
T Consensus        70 ~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~  149 (331)
T PF07995_consen   70 YTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGK  149 (331)
T ss_dssp             EEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTE
T ss_pred             EEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccce
Confidence            3321        2455566655411    1111111111011233456799999998777655332             2


Q ss_pred             EEEEEccCceEEe-------------eccccCCceeEEEEcCC-CCEEEEe-cCCCcEEEEEccCCc-------------
Q 024868          136 LRIMHWPSLRIIL-------------DEPKAHKSVLDMDFSLD-SEFLATT-STDGSARIWKTEDGV-------------  187 (261)
Q Consensus       136 i~~~d~~~~~~~~-------------~~~~~~~~v~~~~~s~~-~~~l~~~-~~d~~i~iwd~~~~~-------------  187 (261)
                      |.-.+. .++...             .+-........++|+|. |+++++- +.+..=.|--+..|.             
T Consensus       150 ilri~~-dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~  228 (331)
T PF07995_consen  150 ILRIDP-DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKY  228 (331)
T ss_dssp             EEEEET-TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCST
T ss_pred             EEEecc-cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCC
Confidence            322332 121100             00011123568999998 7765542 223222222222111             


Q ss_pred             ----------------EEEEEeecCCCceEEEEEecCCCcc-----eEEEEEeeCCCcEEEEEECCCCeEEeee----ec
Q 024868          188 ----------------AWTFLTRNSDEKIELCRFSKDGTKP-----FLFCTVQRGDKALLAVYDISTWNKIGHK----RL  242 (261)
Q Consensus       188 ----------------~~~~~~~~~~~~v~~~~~~p~~~~~-----~~~~~~~~~~d~~i~~~d~~~~~~~~~~----~~  242 (261)
                                      +...+. ++. .+..+.|....++.     +   ++..-..+.|...++..+..+...    ..
T Consensus       229 ~~~~~~~~~~~~~~~~P~~~~~-~~~-ap~G~~~y~g~~fp~~~g~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  303 (331)
T PF07995_consen  229 SGPPIGDAPSCPGFVPPVFAYP-PHS-APTGIIFYRGSAFPEYRGDL---FVADYGGGRIWRLDLDEDGSVTEEEEFLGG  303 (331)
T ss_dssp             TSS-ECTGSS-TTS---SEEET-TT---EEEEEEE-SSSSGGGTTEE---EEEETTTTEEEEEEEETTEEEEEEEEECTT
T ss_pred             CCCccccccCCCCcCccceeec-Ccc-ccCceEEECCccCccccCcE---EEecCCCCEEEEEeeecCCCccceEEcccc
Confidence                            122222 122 36667776543320     1   344444667888887655433211    12


Q ss_pred             cCcCeeEEEEeeCCCEEe
Q 024868          243 LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la  260 (261)
                      ....+.++++.|||.+.+
T Consensus       304 ~~~r~~~v~~~pDG~Lyv  321 (331)
T PF07995_consen  304 FGGRPRDVAQGPDGALYV  321 (331)
T ss_dssp             SSS-EEEEEEETTSEEEE
T ss_pred             CCCCceEEEEcCCCeEEE
Confidence            334789999999998765

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.19  E-value=0.15  Score=26.02  Aligned_cols=42  Identities=24%  Similarity=0.247  Sum_probs=28.5

Q ss_pred             cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (261)
Q Consensus       207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  253 (261)
                      |+++++|    ++...+++|.++|..+++.+..+.. ......+.|+
T Consensus         1 pd~~~ly----v~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLY----VTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS   42 (42)
T ss_pred             CCCCEEE----EEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence            5677642    4455678999999999888776665 3444556553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.15  E-value=1.5  Score=36.10  Aligned_cols=114  Identities=11%  Similarity=0.052  Sum_probs=60.1

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC------cEEEEec----
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG------SRFAAGG----  131 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~----  131 (261)
                      .-.....++|.|||+.|++--..|.|++++-.+..................+....++++|+-      .+|....    
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            345688999999998776644369999987554332111000001011135677899999874      2343331    


Q ss_pred             ------cCCeEEEEEccCc-------eEEee-cccc-CCceeEEEEcCCCCEEEEecCC
Q 024868          132 ------VDGHLRIMHWPSL-------RIILD-EPKA-HKSVLDMDFSLDSEFLATTSTD  175 (261)
Q Consensus       132 ------~d~~i~~~d~~~~-------~~~~~-~~~~-~~~v~~~~~s~~~~~l~~~~~d  175 (261)
                            ....|.-|.+...       +.+.. .... ...-..|.|.|||.++++.++.
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                  1223444544311       11211 1111 0124568899999877765543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.11  E-value=2  Score=37.32  Aligned_cols=155  Identities=8%  Similarity=0.028  Sum_probs=86.7

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccc------eee-eeCCC--------CCCCCCeEEEEEee--CCcEEEEeccCCeEE
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDIN------LLA-KKMPP--------LQDAGPQKCLSFSV--DGSRFAAGGVDGHLR  137 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~------~~~-~~~~~--------~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~  137 (261)
                      .++++++ ..+.|.||+...-.....      ... .....        ......|+.|...-  +...|+.+..||.|.
T Consensus        49 ~n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIA-YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEE-ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            5666665 477799999865433111      000 00000        00123455555544  335678888999999


Q ss_pred             EEEccC-------c----eE---E-----eeccccCCceeEEEEc--CCCCEEEEecCCCcEEEEEccCC--cEEEEEee
Q 024868          138 IMHWPS-------L----RI---I-----LDEPKAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTEDG--VAWTFLTR  194 (261)
Q Consensus       138 ~~d~~~-------~----~~---~-----~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~  194 (261)
                      +|.+++       .    +.   .     .-.......+++++++  ...++||+++....|.||-....  +....-..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            997631       1    00   0     0011122367899998  77888888888788888765432  11111011


Q ss_pred             cCCCceEEEEEecCCC--cceEEEEEeeCCCcEEEEEEC
Q 024868          195 NSDEKIELCRFSKDGT--KPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       195 ~~~~~v~~~~~~p~~~--~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      .....|.+++|-++..  .-+ ..++.++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~-v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGH-VKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccc-eEEEEEeccCcEEEEEE
Confidence            1233488999987652  101 11567778888888887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.88  E-value=1.2  Score=33.37  Aligned_cols=148  Identities=11%  Similarity=0.077  Sum_probs=79.7

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---CcEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  114 (261)
                      .-..||+.+.++..      .......-+.+=.+-+||+.|.+|+..   ..+++++-........ .......+.....
T Consensus        47 ~s~~yD~~tn~~rp------l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~-w~e~~~~m~~~RW  119 (243)
T PF07250_consen   47 HSVEYDPNTNTFRP------LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCD-WTESPNDMQSGRW  119 (243)
T ss_pred             EEEEEecCCCcEEe------ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCC-ceECcccccCCCc
Confidence            55678887776411      111122233444577899999888752   3577777644111000 1111111333333


Q ss_pred             eEEEEEeeCCcEEEEeccCC-eEEEEEccC--ceEE-eecccc-----C-CceeEEEEcCCCCEEEEecCCCcEEEEEcc
Q 024868          115 QKCLSFSVDGSRFAAGGVDG-HLRIMHWPS--LRII-LDEPKA-----H-KSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (261)
Q Consensus       115 v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~--~~~~-~~~~~~-----~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~  184 (261)
                      --...--|||+.|+.|+... +..+|.-..  .... ..+...     . .--..+-..|+|++++.+..+  -.|||..
T Consensus       120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~  197 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYK  197 (243)
T ss_pred             cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCC
Confidence            44455567999999988664 344554321  1111 111110     1 112356668999999998764  4677988


Q ss_pred             CCcEEEEEee
Q 024868          185 DGVAWTFLTR  194 (261)
Q Consensus       185 ~~~~~~~~~~  194 (261)
                      +.+.++.+..
T Consensus       198 ~n~v~~~lP~  207 (243)
T PF07250_consen  198 TNTVVRTLPD  207 (243)
T ss_pred             CCeEEeeCCC
Confidence            8877666653

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.87  E-value=0.22  Score=25.41  Aligned_cols=40  Identities=10%  Similarity=-0.050  Sum_probs=28.5

Q ss_pred             CCCCEEEEec-CCCcEEEEEccCCcEEEEEeecCCCceEEEEE
Q 024868          164 LDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (261)
Q Consensus       164 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  205 (261)
                      |++++|+++. .+++|.++|..+++.+..+....  ....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~--~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG--YPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC--CCceEEe
Confidence            5777666655 57899999999998888777532  2455555

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.62  E-value=3.2  Score=37.11  Aligned_cols=166  Identities=11%  Similarity=0.066  Sum_probs=94.9

Q ss_pred             CCCCCceEEEEC---C----CCCeEEEEecCCcEEEEEEe------CCccc-cceeeeeCCCCC----CCCCeEEEEEee
Q 024868           61 ESEGDPMTIAVN---P----SGDDFVCSTTNGGCKLFEVY------GGATD-INLLAKKMPPLQ----DAGPQKCLSFSV  122 (261)
Q Consensus        61 ~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~i~~~~------~~~~~-~~~~~~~~~~~~----~~~~v~~~~~s~  122 (261)
                      ....+|..|+|.   .    ..++|++ -....+.|+...      ..... ..+.......+.    +..+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456789999998   2    2235555 455568888722      11110 111111111111    345778999999


Q ss_pred             -CCcEEEEeccCCeEEEEEccCce----EEeecc-cc----------CCceeEEEEcCCCCEEEEecCCCcEEEEEccCC
Q 024868          123 -DGSRFAAGGVDGHLRIMHWPSLR----IILDEP-KA----------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG  186 (261)
Q Consensus       123 -~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~-~~----------~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~  186 (261)
                       +.+.||+....|.-.+|++....    ...... ..          ...-..+.|.++-+.|+.++. ..+.++|+++.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             56789999999999999992111    001110 11          122347889888777777764 66899999877


Q ss_pred             cEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          187 VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       187 ~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      .... .........+..+.-+|+.... ++ +.+.   ..|...|+..
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~-~F-iLTs---~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSH-VF-ILTS---KEIIWLDVKS  277 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccce-EE-EEec---CeEEEEEccC
Confidence            6533 2333334468888888874431 11 2222   3466666554

These proteins are found in fungi.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.46  E-value=0.9  Score=37.53  Aligned_cols=76  Identities=14%  Similarity=0.110  Sum_probs=50.4

Q ss_pred             CeEEEEEeeCCcEEEEeccCCeEEEEEc---------cCceEE--eec-------ccc--CCceeEEEEcCCC---CEEE
Q 024868          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHW---------PSLRII--LDE-------PKA--HKSVLDMDFSLDS---EFLA  170 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~---------~~~~~~--~~~-------~~~--~~~v~~~~~s~~~---~~l~  170 (261)
                      .|..+..++.|..++..+.+|-+.++-.         +.++..  .+.       +..  +-.+...+|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4677888999999999989996655531         223211  111       111  1146788999975   5677


Q ss_pred             EecCCCcEEEEEccCCcEE
Q 024868          171 TTSTDGSARIWKTEDGVAW  189 (261)
Q Consensus       171 ~~~~d~~i~iwd~~~~~~~  189 (261)
                      .-+.|+.+++||+.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            7778999999999765443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.44  E-value=2.2  Score=35.19  Aligned_cols=54  Identities=13%  Similarity=0.224  Sum_probs=36.6

Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--Eeecc-----ccCCceeEEEEcCCC
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEP-----KAHKSVLDMDFSLDS  166 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~-----~~~~~v~~~~~s~~~  166 (261)
                      .....|+|.|||++|++--..|.|++++..++..  +..+.     ...+....|+++|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3457899999998887764469999987654432  11111     124568999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.44  E-value=1.7  Score=37.51  Aligned_cols=86  Identities=14%  Similarity=0.150  Sum_probs=49.5

Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee--c--cccCCceeEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--E--PKAHKSVLDM  160 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~--~~~~~~v~~~  160 (261)
                      -.|+||++.+...        ....-.++.+-.+.|+.+..+|+. ..+|++++|++... .+..  .  ......|..+
T Consensus        64 ~~I~If~~sG~lL--------~~~~w~~~~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec  133 (829)
T KOG2280|consen   64 PYIRIFNISGQLL--------GRILWKHGELIGMGWSDDEELICV-QKDGTVHVYGLLGE-FIESNSVGFESQMSDIVEC  133 (829)
T ss_pred             eeEEEEeccccch--------HHHHhcCCCeeeecccCCceEEEE-eccceEEEeecchh-hhcccccccccccCceeEE
Confidence            4578888866543        111222447888999987766555 49999999997532 2222  1  1112246666


Q ss_pred             EEcCCCCEEEEecCCCcEEEEE
Q 024868          161 DFSLDSEFLATTSTDGSARIWK  182 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd  182 (261)
                      .+..+|-.+.+.  +|++.+-.
T Consensus       134 ~~f~~GVavlt~--~g~v~~i~  153 (829)
T KOG2280|consen  134 RFFHNGVAVLTV--SGQVILIN  153 (829)
T ss_pred             EEecCceEEEec--CCcEEEEc
Confidence            666566444443  45554443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.27  E-value=0.9  Score=32.08  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=24.8

Q ss_pred             ceeEEEEcCCC------CEEEEecCCCcEEEEEccC
Q 024868          156 SVLDMDFSLDS------EFLATTSTDGSARIWKTED  185 (261)
Q Consensus       156 ~v~~~~~s~~~------~~l~~~~~d~~i~iwd~~~  185 (261)
                      .+..++|||.|      -+|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78999999954      2788888999999998663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.25  E-value=0.0055  Score=49.15  Aligned_cols=136  Identities=15%  Similarity=0.244  Sum_probs=91.4

Q ss_pred             EEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEE-EecCCCcEEEEEccCCcEEEEEee
Q 024868          116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTR  194 (261)
Q Consensus       116 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~  194 (261)
                      ....|-|.+.-++.++.+..+..||- .++... .....+....++|.-++..++ .+-..+.+.+||+.+... .++..
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~l-e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~  114 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVIL-ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLES  114 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhh-hcceec-ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhc
Confidence            44678887777888888999999984 344322 223344567788888777554 455678999999975432 22221


Q ss_pred             cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                      .....-.-+.|++....     ++.+...+.+.+|+..+.+.+.....|...+.+++|.+.+..+
T Consensus       115 gg~~s~sll~wsKg~~e-----l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPE-----LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             cCcchHHHHhhccCCcc-----ccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence            11111222678888887     5667788999999998766654444477788899998877654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.04  E-value=0.68  Score=40.08  Aligned_cols=118  Identities=13%  Similarity=0.109  Sum_probs=72.1

Q ss_pred             ceEEEECC--CCCeEEEEecCCcEEEEEEeCCcccc------------ceeeeeCCCCCCCCCeEEEEEe--eCCcEEEE
Q 024868           66 PMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDI------------NLLAKKMPPLQDAGPQKCLSFS--VDGSRFAA  129 (261)
Q Consensus        66 v~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~  129 (261)
                      |+.+....  ....|+.+.+||.|.+|..+.-....            .......-.+.-...+.++++.  ...++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            44454433  44578888999999999874311000            0000001111224577889998  77889999


Q ss_pred             eccCCeEEEEEccCceEE-eec--cccCCceeEEEEcCCC---C---EEEEecCCCcEEEEEc
Q 024868          130 GGVDGHLRIMHWPSLRII-LDE--PKAHKSVLDMDFSLDS---E---FLATTSTDGSARIWKT  183 (261)
Q Consensus       130 ~~~d~~i~~~d~~~~~~~-~~~--~~~~~~v~~~~~s~~~---~---~l~~~~~d~~i~iwd~  183 (261)
                      ++....|.||-....+.. ...  ..+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            988888887765442111 111  1233468899997643   2   7788888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.77  E-value=0.56  Score=39.90  Aligned_cols=70  Identities=23%  Similarity=0.267  Sum_probs=44.1

Q ss_pred             CCcEEEEeccCCeEEEEEccC----ceEEee--------------ccc--------cCCceeEEEEcC----CCCEEEEe
Q 024868          123 DGSRFAAGGVDGHLRIMHWPS----LRIILD--------------EPK--------AHKSVLDMDFSL----DSEFLATT  172 (261)
Q Consensus       123 ~~~~l~~~~~d~~i~~~d~~~----~~~~~~--------------~~~--------~~~~v~~~~~s~----~~~~l~~~  172 (261)
                      +...++.+..||.+.......    +.....              +..        .......+++++    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            666778888899888777654    111100              000        012355566666    67899999


Q ss_pred             cCCCcEEEEEccCCcEEEEE
Q 024868          173 STDGSARIWKTEDGVAWTFL  192 (261)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~  192 (261)
                      +.|+.+|+||+.+++++.+.
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999997665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.59  E-value=2.4  Score=35.19  Aligned_cols=82  Identities=13%  Similarity=0.202  Sum_probs=50.3

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEe----------CCccccc----eeeeeCCCCCCCCCeEEEEEeeCC---cEE
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVY----------GGATDIN----LLAKKMPPLQDAGPQKCLSFSVDG---SRF  127 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~----------~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~---~~l  127 (261)
                      .|..+..++.|..++-.+.+| +.+..+.          +++....    .+..........-.+...+|+|+.   ..+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~G-i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKG-LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCceEEEecCCe-eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            377888899999999888899 4454441          1211000    001111111122356778999975   566


Q ss_pred             EEeccCCeEEEEEccCceEE
Q 024868          128 AAGGVDGHLRIMHWPSLRII  147 (261)
Q Consensus       128 ~~~~~d~~i~~~d~~~~~~~  147 (261)
                      ..-..|..+++||+.....+
T Consensus       184 ~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEecCcEEEEEecCCcchh
Confidence            66678999999998765544

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=93.46  E-value=2.8  Score=32.26  Aligned_cols=117  Identities=14%  Similarity=0.149  Sum_probs=65.5

Q ss_pred             eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec------CCCcEEEEEccCCcEEEEEeec----CCCceEEEE
Q 024868          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS------TDGSARIWKTEDGVAWTFLTRN----SDEKIELCR  204 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~  204 (261)
                      .|.+||..+.+-..--..-.+.|..+.|..+.++++.|.      ....+..||+.+.... .+...    -.+++..+.
T Consensus        17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEE
Confidence            488999776553222222345799999987777777664      2456888998766532 23221    234677777


Q ss_pred             Eec-CCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eeccCcCeeEEEEe
Q 024868          205 FSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSIS  253 (261)
Q Consensus       205 ~~p-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s  253 (261)
                      +.. |+..+++.--. ...+..|..||=.++..+.. .......|..+.+-
T Consensus        96 ~~~~d~~~~~~aG~~-~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~  145 (281)
T PF12768_consen   96 FISNDGSNFWVAGRS-ANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL  145 (281)
T ss_pred             eeccCCceEEEecee-cCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence            643 33332221111 33345688888776665543 22223455555443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.03  E-value=5.7  Score=34.62  Aligned_cols=55  Identities=13%  Similarity=0.155  Sum_probs=39.4

Q ss_pred             CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCC
Q 024868          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (261)
Q Consensus       155 ~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~  209 (261)
                      +.+..+..||+.++|+-=...|.|.+-+.+..++...+......+.-.++|.-+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            4577888999999999888889999888877776666653333334466676554

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.01  E-value=4  Score=32.85  Aligned_cols=152  Identities=13%  Similarity=0.059  Sum_probs=81.6

Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      +++ +..+..+|.+.-.|..++.......     .......+..-.+..+|+ |++++.++.++.+|.++++.+......
T Consensus        68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~-----~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~  140 (370)
T COG1520          68 DGT-VYVGTRDGNIFALNPDTGLVKWSYP-----LLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVG  140 (370)
T ss_pred             CCe-EEEecCCCcEEEEeCCCCcEEeccc-----CcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecC
Confidence            444 4445677877777777776322110     000011222233333676 667778888999998888887766544


Q ss_pred             C-CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC--CCceEEEEEecCCCcceEEEEEeeCC--CcEEEE
Q 024868          154 H-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGD--KALLAV  228 (261)
Q Consensus       154 ~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~~~~~~~~~~~--d~~i~~  228 (261)
                      . -.+.....-.++ .++..+.++.+.-.|..+|+.........  ...+...-...++..      ..+..  ++.+.-
T Consensus       141 ~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~v------y~~~~~~~~~~~a  213 (370)
T COG1520         141 GSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTV------YVGSDGYDGILYA  213 (370)
T ss_pred             CCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceE------EEecCCCcceEEE
Confidence            4 111111222233 34444477889999988888876654322  111111111223332      33333  556777


Q ss_pred             EECCCCeEEee
Q 024868          229 YDISTWNKIGH  239 (261)
Q Consensus       229 ~d~~~~~~~~~  239 (261)
                      .|+.+|+....
T Consensus       214 ~~~~~G~~~w~  224 (370)
T COG1520         214 LNAEDGTLKWS  224 (370)
T ss_pred             EEccCCcEeee
Confidence            78877776543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.99  E-value=3.1  Score=31.59  Aligned_cols=177  Identities=15%  Similarity=0.071  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC  117 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~  117 (261)
                      .+-..|+.+++.      ...--+.......+..-|||...++-+.. -|.-.|-++.+.  +.+  .............
T Consensus        84 aiGhLdP~tGev------~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev--t~f--~lp~~~a~~nlet  152 (353)
T COG4257          84 AIGHLDPATGEV------ETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV--TRF--PLPLEHADANLET  152 (353)
T ss_pred             cceecCCCCCce------EEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce--EEe--ecccccCCCcccc
Confidence            555677777664      22222334456788888998876653222 244444433332  111  1111122356677


Q ss_pred             EEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC
Q 024868          118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS  196 (261)
Q Consensus       118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  196 (261)
                      ..|.++|++-+++. .|.---.|-.++.. ..+.... ...+.|+..|||..-++.-.++.|-..|..++... .+....
T Consensus       153 ~vfD~~G~lWFt~q-~G~yGrLdPa~~~i-~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~ae-v~p~P~  229 (353)
T COG4257         153 AVFDPWGNLWFTGQ-IGAYGRLDPARNVI-SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAE-VVPQPN  229 (353)
T ss_pred             eeeCCCccEEEeec-cccceecCcccCce-eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcc-eecCCC
Confidence            88999999888874 22211122221111 1122222 24678999999998888777888888887776332 222111


Q ss_pred             --CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          197 --DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       197 --~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                        ....+.+--+|.|+.     -++....+.+..||-..
T Consensus       230 ~~~~gsRriwsdpig~~-----wittwg~g~l~rfdPs~  263 (353)
T COG4257         230 ALKAGSRRIWSDPIGRA-----WITTWGTGSLHRFDPSV  263 (353)
T ss_pred             cccccccccccCccCcE-----EEeccCCceeeEeCccc
Confidence              112445545666664     34555566777777543

>PLN02153 epithiospecifier protein

Probab=92.88  E-value=3.9  Score=32.45  Aligned_cols=163  Identities=10%  Similarity=0.087  Sum_probs=72.0

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-CCceEEEECCCCCeEEEEecC-----CcEEEEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTN-----GGCKLFEV   92 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~   92 (261)
                      ..+++.||.+.... ...-.++.||+.+..+...+... ..+... .....+.+  +++.++.|+.+     ..+.+||.
T Consensus        33 ~~iyv~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~~-~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  108 (341)
T PLN02153         33 DKLYSFGGELKPNE-HIDKDLYVFDFNTHTWSIAPANG-DVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT  108 (341)
T ss_pred             CEEEEECCccCCCC-ceeCcEEEEECCCCEEEEcCccC-CCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence            45666776542110 00115888998887763211100 000000 01122222  45666777653     34677777


Q ss_pred             eCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-----------CeEEEEEccCceEEeecccc----CC-c
Q 024868           93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----------GHLRIMHWPSLRIILDEPKA----HK-S  156 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~~~d~~~~~~~~~~~~~----~~-~  156 (261)
                      .+..-  ..+................+..-+++.++.|+.+           ..+.+||..+.+=.. +...    .. .
T Consensus       109 ~t~~W--~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~  185 (341)
T PLN02153        109 VKNEW--TFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRG  185 (341)
T ss_pred             CCCEE--EEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCC
Confidence            65432  1111000000001111222223466777777743           247788877654321 1111    11 1


Q ss_pred             eeEEEEcCCCCEEEEecCC-------------CcEEEEEccCCcEE
Q 024868          157 VLDMDFSLDSEFLATTSTD-------------GSARIWKTEDGVAW  189 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d-------------~~i~iwd~~~~~~~  189 (261)
                      -.+++. -++++++.++.+             ..+.+||..+.+-.
T Consensus       186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence            112222 256665555421             45888998876544

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.60  E-value=0.58  Score=23.45  Aligned_cols=29  Identities=24%  Similarity=0.288  Sum_probs=19.2

Q ss_pred             cCCceeEEEEcCCCCEEEEecC-C--CcEEEE
Q 024868          153 AHKSVLDMDFSLDSEFLATTST-D--GSARIW  181 (261)
Q Consensus       153 ~~~~v~~~~~s~~~~~l~~~~~-d--~~i~iw  181 (261)
                      ....-....|||||+.|+.++. +  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445778999999998876653 4  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.51  E-value=0.34  Score=42.52  Aligned_cols=75  Identities=16%  Similarity=0.345  Sum_probs=46.3

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEE-----------ECCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA-----------VNPS   74 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~   74 (261)
                      ++.-+.|.|---...++.++..++.      +.+..||.....         .+.+|...+..++           .+||
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~------i~lL~~~ra~~~---------l~rsHs~~~~d~a~~~~g~~~l~~lSpD  246 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGE------IRLLNINRALRS---------LFRSHSQRVTDMAFFAEGVLKLASLSPD  246 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCc------eeEeeechHHHH---------HHHhcCCCcccHHHHhhchhhheeeCCC
Confidence            3455667664323445556655552      266666654333         2445655544433           5899


Q ss_pred             CCeEEEEecCCcEEEEEEeCC
Q 024868           75 GDDFVCSTTNGGCKLFEVYGG   95 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~   95 (261)
                      |..++....||.++.|.+.-.
T Consensus       247 Gtv~a~a~~dG~v~f~Qiyi~  267 (1283)
T KOG1916|consen  247 GTVFAWAISDGSVGFYQIYIT  267 (1283)
T ss_pred             CcEEEEeecCCccceeeeeee
Confidence            999999999999988887643

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.30  E-value=4.6  Score=31.79  Aligned_cols=66  Identities=11%  Similarity=0.074  Sum_probs=34.5

Q ss_pred             CCCeEEEEecC-----CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC----eEEEEEccCc
Q 024868           74 SGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSL  144 (261)
Q Consensus        74 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~  144 (261)
                      +++..+.|+..     ..+..||..+.+-  ..    ...+....+........++++.+.|+.++    .+..||..+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W--~~----~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEW--FE----LPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCe--eE----CCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            45666666542     3577777765442  11    11111111222233345678888887653    3567887765


Q ss_pred             e
Q 024868          145 R  145 (261)
Q Consensus       145 ~  145 (261)
                      +
T Consensus       197 ~  197 (323)
T TIGR03548       197 Q  197 (323)
T ss_pred             e
Confidence            4

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK13615 lipoprotein LpqB; Provisional

Probab=92.12  E-value=6.9  Score=33.41  Aligned_cols=139  Identities=11%  Similarity=0.112  Sum_probs=80.8

Q ss_pred             EEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcEEEE-Ee
Q 024868          116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTF-LT  193 (261)
Q Consensus       116 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~-~~  193 (261)
                      .+++.++++..++....++.+.++.... .. .... ....+...+|.++| .+-+.-.+...++.... +|+.... ..
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~-~~-~~~~-~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~  412 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGDR-DA-VLLD-TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS  412 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCCC-cc-eeec-cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence            6789999999988887777777775541 21 1121 12346778888887 55554443344544443 2443221 12


Q ss_pred             ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC--CC--eEE--e--eeeccCcCeeEEEEeeCCCEEe
Q 024868          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TW--NKI--G--HKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~--~~--~~~--~--~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ...+..|..+..|+||....+  ++.....++|++--+.  .+  ..+  .  .+......+.++.|..+++.++
T Consensus       413 ~~~~~~I~~lrvSrDG~R~Av--i~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laV  485 (557)
T PRK13615        413 WTATGRVVSLEVARDGARVLV--QLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVAT  485 (557)
T ss_pred             ccCCCeeEEEEeCCCccEEEE--EEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEE
Confidence            223446999999999998432  3334445667664332  22  112  1  1111224788999999988654

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=91.79  E-value=2  Score=38.24  Aligned_cols=79  Identities=20%  Similarity=0.187  Sum_probs=50.7

Q ss_pred             CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEE-ecCCC-----cEEEEEccCC-cEEEEEeecCCCceEEEEE
Q 024868          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDG-----SARIWKTEDG-VAWTFLTRNSDEKIELCRF  205 (261)
Q Consensus       133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~-----~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~  205 (261)
                      .+.|.+-|...............++.+.+|||||+.|+. .+..+     .|++-|+.+. .-+-.+... ...|..-..
T Consensus       328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve-~aaiprwrv  406 (912)
T TIGR02171       328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE-NAAIPRWRV  406 (912)
T ss_pred             CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc-cccccceEe
Confidence            357888887654443321555678999999999999987 44443     4888888753 222333322 334666666


Q ss_pred             ecCCCcc
Q 024868          206 SKDGTKP  212 (261)
Q Consensus       206 ~p~~~~~  212 (261)
                      .++|...
T Consensus       407 ~e~gdt~  413 (912)
T TIGR02171       407 LENGDTV  413 (912)
T ss_pred             cCCCCeE
Confidence            7777763

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.45  E-value=2.1  Score=36.50  Aligned_cols=76  Identities=20%  Similarity=0.174  Sum_probs=43.4

Q ss_pred             CCCCeEEEEecCCcEEEEEEeCCc---cccc-----------eeeeeCCC-----CCCCCCeEEEEEee----CCcEEEE
Q 024868           73 PSGDDFVCSTTNGGCKLFEVYGGA---TDIN-----------LLAKKMPP-----LQDAGPQKCLSFSV----DGSRFAA  129 (261)
Q Consensus        73 ~~~~~l~~~~~dg~i~i~~~~~~~---~~~~-----------~~~~~~~~-----~~~~~~v~~~~~s~----~~~~l~~  129 (261)
                      ++...++.+..||.+.........   ....           .+......     .........+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            466778888899988888876511   1000           00000000     01123456666666    6778889


Q ss_pred             eccCCeEEEEEccCceEEe
Q 024868          130 GGVDGHLRIMHWPSLRIIL  148 (261)
Q Consensus       130 ~~~d~~i~~~d~~~~~~~~  148 (261)
                      .+.|+++++||+.+++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             EETTSEEEEEETTTTCEEE
T ss_pred             EeCCCeEEEEECCCCeEEE
Confidence            9999999999999988844

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.28  E-value=5.5  Score=30.66  Aligned_cols=118  Identities=14%  Similarity=0.121  Sum_probs=63.6

Q ss_pred             ceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe------cCCcEEEEEEeCCccccceeeeeCCCC
Q 024868           36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPL  109 (261)
Q Consensus        36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~~~  109 (261)
                      +--+..||..+.++      ...-.+-.+.|+++.|..+.+.++.|.      ....+..||..+..-  ....... .-
T Consensus        15 C~~lC~yd~~~~qW------~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~-s~   85 (281)
T PF12768_consen   15 CPGLCLYDTDNSQW------SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGS-SN   85 (281)
T ss_pred             CCEEEEEECCCCEe------ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcc-cc
Confidence            44688889888887      223333457899999987666666664      245678888877642  1110000 00


Q ss_pred             CCCCCeEEEEEee-CCc-EEEEec-c--CCeEEEEEccCceEEee-ccccCCceeEEEE
Q 024868          110 QDAGPQKCLSFSV-DGS-RFAAGG-V--DGHLRIMHWPSLRIILD-EPKAHKSVLDMDF  162 (261)
Q Consensus       110 ~~~~~v~~~~~s~-~~~-~l~~~~-~--d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~  162 (261)
                      .-.+++..+.+.. |+. ..+.|. .  +..|..||-.+-..+.. .......|..+.+
T Consensus        86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            1136777777754 444 333433 2  33466676443333322 1222234555544

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=91.26  E-value=6.4  Score=31.38  Aligned_cols=48  Identities=23%  Similarity=0.178  Sum_probs=33.5

Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +++++..+..+|.+.-||..+.... .+...-...+.++.|||+.++++
T Consensus       188 ~~~a~l~g~~~GRl~~YD~~tK~~~-VLld~L~F~NGlaLS~d~sfvl~  235 (376)
T KOG1520|consen  188 FVFAALEGDPTGRLFRYDPSTKVTK-VLLDGLYFPNGLALSPDGSFVLV  235 (376)
T ss_pred             eEEeeecCCCccceEEecCcccchh-hhhhcccccccccCCCCCCEEEE
Confidence            4555677778899999998775532 22222245578999999998763

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=91.07  E-value=6.7  Score=31.21  Aligned_cols=13  Identities=31%  Similarity=0.764  Sum_probs=10.4

Q ss_pred             EEEEEcCCCCcee
Q 024868           38 EIFSFDPKTTSVY   50 (261)
Q Consensus        38 ~i~~~~~~~~~~~   50 (261)
                      .++.||+.+..+.
T Consensus        86 ~v~~Yd~~~~~W~   98 (346)
T TIGR03547        86 DVYRYDPKKNSWQ   98 (346)
T ss_pred             cEEEEECCCCEEe
Confidence            5888999888763

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=90.89  E-value=10  Score=33.06  Aligned_cols=143  Identities=21%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             CCCCeEEEEEeeCCcEEEEeccCC----eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC------CCc---
Q 024868          111 DAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST------DGS---  177 (261)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~---  177 (261)
                      ....+..+.|+|+|+.++..+.++    .+++.+.. +    ........+....|+|+++.++....      ++.   
T Consensus        58 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  132 (620)
T COG1506          58 FGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHL  132 (620)
T ss_pred             cCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCceee
Confidence            345677889999999998876333    24444433 2    22233346788889999887776211      222   


Q ss_pred             ----EEEEEccCC-cEEE--EEe--------ecCCCceEEEEEecCCCcceEEEEEeeCCCc---EEEEEECCCCeEEee
Q 024868          178 ----ARIWKTEDG-VAWT--FLT--------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKA---LLAVYDISTWNKIGH  239 (261)
Q Consensus       178 ----i~iwd~~~~-~~~~--~~~--------~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~---~i~~~d~~~~~~~~~  239 (261)
                          +.+|....+ +...  .+.        ......+....++++++..+.. ......+.   ...++...++... .
T Consensus       133 ~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~  210 (620)
T COG1506         133 FVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASI-RLDDDADPWVTNLYVLIEGNGELE-S  210 (620)
T ss_pred             eecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEe-eeccccCCceEeeEEEecCCCceE-E
Confidence                334433333 1111  111        1112235555555555652211 11111122   2333333344443 4


Q ss_pred             eeccCcCeeEEEEeeCCCEEe
Q 024868          240 KRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .......+..+.|.++|+.++
T Consensus       211 ~~~~~~~~~~~~~~~~gk~~~  231 (620)
T COG1506         211 LTPGEGSISKLAFDADGKSIA  231 (620)
T ss_pred             EcCCCceeeeeeeCCCCCeeE
Confidence            455556688899999998654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.85  E-value=8.3  Score=35.88  Aligned_cols=73  Identities=18%  Similarity=0.377  Sum_probs=49.0

Q ss_pred             CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc-----e---E--------------Eeecc-ccCCceeEEEEcCCCCE
Q 024868          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-----R---I--------------ILDEP-KAHKSVLDMDFSLDSEF  168 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-----~---~--------------~~~~~-~~~~~v~~~~~s~~~~~  168 (261)
                      ...|.++....+|+.+++| .||.++-.-....     +   .              +.+++ .+.++|..+.....-+.
T Consensus       178 g~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I  256 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI  256 (1311)
T ss_pred             CceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence            3567888877788877777 6664432211110     0   0              11222 33458999999888889


Q ss_pred             EEEecCCCcEEEEEccC
Q 024868          169 LATTSTDGSARIWKTED  185 (261)
Q Consensus       169 l~~~~~d~~i~iwd~~~  185 (261)
                      +++-+..+.|++||+..
T Consensus       257 lY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  257 LYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeccCceEEEEEccC
Confidence            99999999999999975

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.75  E-value=1.2  Score=22.21  Aligned_cols=29  Identities=28%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             CCCCceEEEECCCCCeEEEEec-C--CcEEEE
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTT-N--GGCKLF   90 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~-d--g~i~i~   90 (261)
                      ....-....|+|||+.|+..+. +  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3456778999999999886654 3  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.51  E-value=6.8  Score=30.34  Aligned_cols=172  Identities=13%  Similarity=0.193  Sum_probs=87.6

Q ss_pred             CCceEEEEEcCCCCceecCCeEEeeecCC----CCCceEEEECCCC----CeEE-EEe-cCCcEEEEEEeCCccccceee
Q 024868           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDES----EGDPMTIAVNPSG----DDFV-CST-TNGGCKLFEVYGGATDINLLA  103 (261)
Q Consensus        34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~----~~l~-~~~-~dg~i~i~~~~~~~~~~~~~~  103 (261)
                      ...-++..||..+.++    .....++.+    ......+.+....    +.+| .+. ..+-|.++|+.+++... .+.
T Consensus        31 ~~~pKLv~~Dl~t~~l----i~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~R-v~~  105 (287)
T PF03022_consen   31 VCPPKLVAFDLKTNQL----IRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWR-VLH  105 (287)
T ss_dssp             TS--EEEEEETTTTCE----EEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEE-EET
T ss_pred             CCCcEEEEEECCCCcE----EEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEE-Eec
Confidence            3445899999988876    223334332    3456677775521    1333 322 23579999998876421 111


Q ss_pred             eeCC-------------CCCCCCCeEEEEEee---CCcEEEEeccCCeEEEEEccC-----ceEE--------eeccccC
Q 024868          104 KKMP-------------PLQDAGPQKCLSFSV---DGSRFAAGGVDGHLRIMHWPS-----LRII--------LDEPKAH  154 (261)
Q Consensus       104 ~~~~-------------~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~~~d~~~-----~~~~--------~~~~~~~  154 (261)
                      ....             .+.....+..++.+|   +++.|....-.+ -++|.+.+     ....        ....+..
T Consensus       106 ~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k  184 (287)
T PF03022_consen  106 NSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDK  184 (287)
T ss_dssp             CGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-
T ss_pred             CCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceecccc
Confidence            1111             111123467777766   666776664333 12333321     1100        0111121


Q ss_pred             -CceeEEEEcCCCCEEEEecCCCcEEEEEccCC---cEEEEEe-ecC-CCceEEEEEec--CCCc
Q 024868          155 -KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLT-RNS-DEKIELCRFSK--DGTK  211 (261)
Q Consensus       155 -~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~-~~~-~~~v~~~~~~p--~~~~  211 (261)
                       .....++.+++|.++++--..+.|..|+..+.   +....+. ... -..+.++.+.+  +|..
T Consensus       185 ~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L  249 (287)
T PF03022_consen  185 GSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYL  249 (287)
T ss_dssp             --SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-E
T ss_pred             CCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceE
Confidence             35677889999999999888999999998751   1222222 222 23577888888  6654

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PLN02193 nitrile-specifier protein

Probab=89.92  E-value=11  Score=31.67  Aligned_cols=163  Identities=10%  Similarity=0.067  Sum_probs=72.7

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEEEEe
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVY   93 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~   93 (261)
                      ..+++.|+...... ...-.++.||+.+..+...+.. ...+. ..........-+++.++.|+.+     ..+..||+.
T Consensus       176 ~~iyv~GG~~~~~~-~~~~~v~~yD~~~~~W~~~~~~-g~~P~-~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~  252 (470)
T PLN02193        176 NKIYSFGGEFTPNQ-PIDKHLYVFDLETRTWSISPAT-GDVPH-LSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT  252 (470)
T ss_pred             CEEEEECCcCCCCC-CeeCcEEEEECCCCEEEeCCCC-CCCCC-CcccceEEEEECCEEEEECCCCCCCCCccEEEEECC
Confidence            34566666432110 0112588999988776321100 00110 0011111112245566666654     357777776


Q ss_pred             CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccCceEEeeccc--c-C-CceeEEEEcC
Q 024868           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIILDEPK--A-H-KSVLDMDFSL  164 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~--~-~-~~v~~~~~s~  164 (261)
                      +..-  ..+.. ....+. .+.......-++++++.|+.++     .+..||+.+.+-......  . . ..-..++. -
T Consensus       253 t~~W--~~l~~-~~~~P~-~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~  327 (470)
T PLN02193        253 TNEW--KLLTP-VEEGPT-PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-V  327 (470)
T ss_pred             CCEE--EEcCc-CCCCCC-CccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-E
Confidence            5432  11111 000011 1111112223567777777543     467788776543211100  0 0 01112222 2


Q ss_pred             CCCEEEEecCC----CcEEEEEccCCcEE
Q 024868          165 DSEFLATTSTD----GSARIWKTEDGVAW  189 (261)
Q Consensus       165 ~~~~l~~~~~d----~~i~iwd~~~~~~~  189 (261)
                      ++++++.++.+    ..+.+||+.+.+..
T Consensus       328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~  356 (470)
T PLN02193        328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWT  356 (470)
T ss_pred             CCcEEEEECCCCCccCceEEEECCCCEEE
Confidence            56777777655    45899999877653

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=89.70  E-value=14  Score=32.77  Aligned_cols=91  Identities=16%  Similarity=0.120  Sum_probs=49.4

Q ss_pred             eEEEEcCCCCEEEEecCCC-----cEEEEEcc---CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868          158 LDMDFSLDSEFLATTSTDG-----SARIWKTE---DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d~-----~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~  229 (261)
                      ..++|-|.|..+++-..||     .|.++.-+   -|+.-...  ..+..+...+|+-....      ......+.+++|
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~--~~dEk~~~~~wn~~s~v------lav~~~n~~~lw  321 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV--GCDEKAFLENWNLLSTV------LAVAEGNLLKLW  321 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC--CchhhhhhhhhhHHHHH------HHHhhcceEEEE
Confidence            4589999999999876554     24444422   12221111  12223566777766554      334455679999


Q ss_pred             ECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868          230 DISTWNKIGHKRLLRKPASVLSISLDG  256 (261)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~dg  256 (261)
                      -..+..-.......-..+.-+.|+|..
T Consensus       322 ttkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         322 TTKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EccceEEEEEEeecCCCcceeeecccc
Confidence            877644321122222345556677643

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.64  E-value=4.9  Score=28.37  Aligned_cols=35  Identities=14%  Similarity=0.150  Sum_probs=23.1

Q ss_pred             ceEEEEEecCCCcce-EEEEEeeCCCcEEEEEECCC
Q 024868          199 KIELCRFSKDGTKPF-LFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       199 ~v~~~~~~p~~~~~~-~~~~~~~~~d~~i~~~d~~~  233 (261)
                      .+..++|||.|--.. --.++.-..++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            588999999652100 01145667788999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.62  E-value=8.2  Score=29.95  Aligned_cols=182  Identities=15%  Similarity=0.100  Sum_probs=95.6

Q ss_pred             CCceEEEECCCCC------------eEEEEecCCcEEEEEEeCCccc--cceeeeeCCCCCCCCCeEEEEEeeC--CcEE
Q 024868           64 GDPMTIAVNPSGD------------DFVCSTTNGGCKLFEVYGGATD--INLLAKKMPPLQDAGPQKCLSFSVD--GSRF  127 (261)
Q Consensus        64 ~~v~~~~~~~~~~------------~l~~~~~dg~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l  127 (261)
                      ...+.+.|+....            .++.+++||+|.-|.-.-....  ...+  .........-...+++.+.  +.+|
T Consensus        77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~--~~d~s~~gavYkGLAi~~~~~~~~L  154 (336)
T TIGR03118        77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEI--VVDASQQGNVYKGLAVGPTGGGDYL  154 (336)
T ss_pred             CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEE--EEccCCCcceeeeeEEeecCCCceE
Confidence            3577777764332            2566788999999985333210  0000  0000011122356666653  4566


Q ss_pred             EEec-cCCeEEEEEccCceEEe--ec-----cccCCc--eeE------EE---EcCCCCEEEEecCCCcEEEEEccCCcE
Q 024868          128 AAGG-VDGHLRIMHWPSLRIIL--DE-----PKAHKS--VLD------MD---FSLDSEFLATTSTDGSARIWKTEDGVA  188 (261)
Q Consensus       128 ~~~~-~d~~i~~~d~~~~~~~~--~~-----~~~~~~--v~~------~~---~s~~~~~l~~~~~d~~i~iwd~~~~~~  188 (261)
                      ..+. ..++|.++|-.=.+...  .+     .....+  |..      +.   -.++++.=+.+..-|.|-+||+. |+.
T Consensus       155 YaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l  233 (336)
T TIGR03118       155 YAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQL  233 (336)
T ss_pred             EEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcE
Confidence            6554 67889999843221110  00     000001  111      11   11222222223334689999974 787


Q ss_pred             EEEEeec--CCCceEEEEEec------CCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC------cCeeEEEEee
Q 024868          189 WTFLTRN--SDEKIELCRFSK------DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------KPASVLSISL  254 (261)
Q Consensus       189 ~~~~~~~--~~~~v~~~~~~p------~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~v~~~~~s~  254 (261)
                      ++++...  .+ ..+.++..|      .|..     ++..-.||+|..||..+++.+..+....      ..++.++|-.
T Consensus       234 ~~r~as~g~LN-aPWG~a~APa~FG~~sg~l-----LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       234 LRRVASSGRLN-APWGLAIAPESFGSLSGAL-----LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             EEEeccCCccc-CCceeeeChhhhCCCCCCe-----EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            7777432  12 356677655      3454     4666679999999999888776555432      3456677654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.60  E-value=10  Score=31.09  Aligned_cols=147  Identities=14%  Similarity=0.114  Sum_probs=80.8

Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-----CCcEEEEeccCCeEEEEEccCc--e-
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWPSL--R-  145 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~~~d~~~~--~-  145 (261)
                      +...+++|+..|.++||+..........+   .-...-..+|..+..-+     +...||+- .-+.+.+|.+...  . 
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~l---llE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDL---LLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccE---EEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCc
Confidence            34689999999999999986544211100   11111245777776543     22345553 6677888877321  1 


Q ss_pred             ------EEeeccccC--CceeEEEEcC----C-CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868          146 ------IILDEPKAH--KSVLDMDFSL----D-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       146 ------~~~~~~~~~--~~v~~~~~s~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                            .+.....|+  .....++.-|    . -.+++.-+.||.+.+|+-+.---...+..  ---...+.+.|.-.. 
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~tDs-  188 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRTDS-  188 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecCCE-
Confidence                  122223333  2344455433    2 35788899999999999654332223322  112345667776665 


Q ss_pred             eEEEEEeeCCCcEEEEEEC
Q 024868          213 FLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~  231 (261)
                          +++++.+..+.-|..
T Consensus       189 ----fvt~sss~~l~~Yky  203 (418)
T PF14727_consen  189 ----FVTASSSWTLECYKY  203 (418)
T ss_pred             ----EEEecCceeEEEecH
Confidence                355555555666553

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.49  E-value=4.7  Score=26.98  Aligned_cols=115  Identities=12%  Similarity=0.063  Sum_probs=66.9

Q ss_pred             EEeeCCcEEEEeccCCeEEEEEccCceE-------EeeccccCCceeEEEEcC-----CCCEEEEecCCCcEEEEEccCC
Q 024868          119 SFSVDGSRFAAGGVDGHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-----DSEFLATTSTDGSARIWKTEDG  186 (261)
Q Consensus       119 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~iwd~~~~  186 (261)
                      +|......|++++.-|+|.+++......       ...+..-...|++++-.+     +...|+.|+ ...+..||+.+.
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence            4544455677787888899987653321       113334445677765433     234566665 567999999876


Q ss_pred             cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868          187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (261)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  238 (261)
                      .-+..-..+ + .++++.+-.-+...--  ++..+.+..|.-||.+..+...
T Consensus        84 ~d~Fyke~~-D-Gvn~i~~g~~~~~~~~--l~ivGGncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   84 SDLFYKEVP-D-GVNAIVIGKLGDIPSP--LVIVGGNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             chhhhhhCc-c-ceeEEEEEecCCCCCc--EEEECceEEEEEeCCCCcEEEE
Confidence            654433322 2 3777776432221000  3455566789989987655543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.42  E-value=4  Score=33.41  Aligned_cols=113  Identities=12%  Similarity=0.086  Sum_probs=63.6

Q ss_pred             CCCCeEEEEecCCcEEEE-EEeCCccccceeeeeCCCCCC-CCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec
Q 024868           73 PSGDDFVCSTTNGGCKLF-EVYGGATDINLLAKKMPPLQD-AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (261)
Q Consensus        73 ~~~~~l~~~~~dg~i~i~-~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  150 (261)
                      ..|..+.+.+.||-+.-| |......+.-..   ...+.- ..++..+.-..+.+-+++-...|++.++.....+.. ..
T Consensus       278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h---~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~  353 (733)
T COG4590         278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNH---IRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LF  353 (733)
T ss_pred             hCceeEEEEcCCCceeeeeeeecCCCCccee---eeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-eh
Confidence            346667888899988877 555443211100   000000 122222222223345666677888877764433332 22


Q ss_pred             cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE
Q 024868          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (261)
Q Consensus       151 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~  190 (261)
                      ......+.-+++||.+.++++- +.|.++++.+++..+.-
T Consensus       354 ~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pei  392 (733)
T COG4590         354 ERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEI  392 (733)
T ss_pred             hhhhcCcceeeeCcccchheee-cCCceEEEEecCCCCCc
Confidence            2333467789999999988875 35779999888765543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.41  E-value=6.7  Score=28.66  Aligned_cols=50  Identities=12%  Similarity=0.142  Sum_probs=34.2

Q ss_pred             cEEEEeccCCeEEEEEccCce-EEeeccccCCceeEEEEcCCCCEEEEecC
Q 024868          125 SRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTST  174 (261)
Q Consensus       125 ~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  174 (261)
                      ..|+.+.....|.+|++.+.+ ........-+.|..+.++..|++|++--.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEe
Confidence            344444567789999998322 22223333478999999999999998644

>smart00564 PQQ beta-propeller repeat

Probab=89.28  E-value=1.3  Score=21.00  Aligned_cols=25  Identities=20%  Similarity=0.124  Sum_probs=20.4

Q ss_pred             EEEEecCCCcEEEEEccCCcEEEEE
Q 024868          168 FLATTSTDGSARIWKTEDGVAWTFL  192 (261)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~~~~~~~  192 (261)
                      .++.++.++.+..+|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888999999999999876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.04  E-value=1.4  Score=27.22  Aligned_cols=43  Identities=19%  Similarity=0.098  Sum_probs=28.6

Q ss_pred             EeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ..+..+|.+.-||..+++....+... ...+.+++++|+++|++
T Consensus        31 le~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv   73 (89)
T PF03088_consen   31 LEGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLV   73 (89)
T ss_dssp             HHT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEE
T ss_pred             ecCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEE
Confidence            34566789999999998764333333 45689999999998763

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02193 nitrile-specifier protein

Probab=88.71  E-value=13  Score=31.13  Aligned_cols=159  Identities=13%  Similarity=0.031  Sum_probs=73.5

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-----cEEEEEEeC
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYG   94 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~   94 (261)
                      .+.+.||.++.   ...-.++.||+.+..+....... ..+ ....-.++.. -+++.++.|+.++     .+..||+.+
T Consensus       230 ~lYvfGG~~~~---~~~ndv~~yD~~t~~W~~l~~~~-~~P-~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t  303 (470)
T PLN02193        230 TLYVFGGRDAS---RQYNGFYSFDTTTNEWKLLTPVE-EGP-TPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVD  303 (470)
T ss_pred             EEEEECCCCCC---CCCccEEEEECCCCEEEEcCcCC-CCC-CCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCC
Confidence            45666665432   11225888999887763211000 000 1111112222 2455666666543     356677665


Q ss_pred             CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC----CeEEEEEccCceEEeeccc---cCC-ceeEEEEcCCC
Q 024868           95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEPK---AHK-SVLDMDFSLDS  166 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~---~~~-~v~~~~~s~~~  166 (261)
                      ..-  ............... ..+ ..-+++.++.++.+    ..+.+||+.+.+-......   ... ...++ ..-++
T Consensus       304 ~~W--~~~~~~~~~~~~R~~-~~~-~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~  378 (470)
T PLN02193        304 KKW--FHCSTPGDSFSIRGG-AGL-EVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGK  378 (470)
T ss_pred             CEE--EeCCCCCCCCCCCCC-cEE-EEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECC
Confidence            432  111000000001111 111 22367777777654    4588999877653221111   111 11222 22356


Q ss_pred             CEEEEecCC--------------CcEEEEEccCCcEE
Q 024868          167 EFLATTSTD--------------GSARIWKTEDGVAW  189 (261)
Q Consensus       167 ~~l~~~~~d--------------~~i~iwd~~~~~~~  189 (261)
                      ++++.|+.+              +.+.+||+.+.+-.
T Consensus       379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             EEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence            777777753              24788888876543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.06  E-value=11  Score=29.22  Aligned_cols=197  Identities=11%  Similarity=-0.033  Sum_probs=0.0

Q ss_pred             CeEEeeecCCC-CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec
Q 024868           53 PLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (261)
Q Consensus        53 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (261)
                      +.....+-+|- ..+..+....+-.++..|-.---+-+|+.........     .......+-+..+.++  +++...+.
T Consensus        31 ~~v~~~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l-----~~~i~~~~l~~Dv~vs--e~yvyvad  103 (370)
T COG5276          31 VHVGYAYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVL-----LSVINARDLFADVRVS--EEYVYVAD  103 (370)
T ss_pred             cccceEEeeeccCCcccccccccccccccCceEeeccccCcccccCcce-----EEEEehhhhhheeEec--ccEEEEEc


Q ss_pred             cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       132 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      .+.-+++.|+.+.......-.-.-.-..-.|.-.|++.+.+..|.-..+.|+.+.+.....-......--.-...-.|++
T Consensus       104 ~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~  183 (370)
T COG5276         104 WSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNY  183 (370)
T ss_pred             CCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCe


Q ss_pred             ceEEEEEeeCCCcEEEEEECCCCe--EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          212 PFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                           ...+..|+-+.+-|+....  .+......+..+.++..+++--++++
T Consensus       184 -----AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv  230 (370)
T COG5276         184 -----AYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV  230 (370)
T ss_pred             -----EEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE

>PRK13613 lipoprotein LpqB; Provisional

Probab=87.98  E-value=17  Score=31.53  Aligned_cols=142  Identities=16%  Similarity=0.120  Sum_probs=0.0

Q ss_pred             CeEEEEEeeCCcEEEEeccCC-eEEEEEccCceE----EeeccccCCceeEEEEcCCCCEEEEecC----CCcEEEEEcc
Q 024868          114 PQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST----DGSARIWKTE  184 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i~iwd~~  184 (261)
                      .+.+++.++++..++....++ .+++..+..+..    ......... +...+|.++| .+-+...    ...+++..- 
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~-Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-  440 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGR-LTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-  440 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCc-ccCCcCcCCC-CEEEecCCCCCceEEEEEcC-


Q ss_pred             CCcEEEEEeecCCC-ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE-------EeeeeccCcCeeEEEEeeCC
Q 024868          185 DGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-------IGHKRLLRKPASVLSISLDG  256 (261)
Q Consensus       185 ~~~~~~~~~~~~~~-~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~v~~~~~s~dg  256 (261)
                      +++....-..-..+ .|..+..|+||....+  ++.....++|++--+.....       ...+...-..+.+++|..++
T Consensus       441 ~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAv--v~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~  518 (599)
T PRK13613        441 DGEPVEVRTPELDGHRVVAVRVARDGVRVAL--IVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDS  518 (599)
T ss_pred             CCcEEEeeccccCCCEeEEEEECCCccEEEE--EEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCC


Q ss_pred             CEEe
Q 024868          257 KYLA  260 (261)
Q Consensus       257 ~~la  260 (261)
                      ..++
T Consensus       519 sL~V  522 (599)
T PRK13613        519 QLVV  522 (599)
T ss_pred             EEEE

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=87.84  E-value=3.3  Score=37.01  Aligned_cols=84  Identities=13%  Similarity=0.205  Sum_probs=50.7

Q ss_pred             eEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCC-----eEEEEEccCce-EEe
Q 024868           77 DFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG-----HLRIMHWPSLR-IIL  148 (261)
Q Consensus        77 ~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~-----~i~~~d~~~~~-~~~  148 (261)
                      +||.-.. .+.|.+-|.......       ...+....++.+.+|||||+.|+. .+.++     .|++-++.+.. ...
T Consensus       320 kiAfv~~~~~~L~~~D~dG~n~~-------~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~v  392 (912)
T TIGR02171       320 KLAFRNDVTGNLAYIDYTKGASR-------AVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLV  392 (912)
T ss_pred             eEEEEEcCCCeEEEEecCCCCce-------EEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCce
Confidence            3444332 357888888765531       111345678899999999999998 44333     48888887543 223


Q ss_pred             eccccCCceeEEEEcCCCC
Q 024868          149 DEPKAHKSVLDMDFSLDSE  167 (261)
Q Consensus       149 ~~~~~~~~v~~~~~s~~~~  167 (261)
                      ++......|..-...++|.
T Consensus       393 kl~ve~aaiprwrv~e~gd  411 (912)
T TIGR02171       393 KLPVENAAIPRWRVLENGD  411 (912)
T ss_pred             EeecccccccceEecCCCC
Confidence            3333344565555566555

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=87.79  E-value=9.1  Score=32.54  Aligned_cols=57  Identities=23%  Similarity=0.348  Sum_probs=34.3

Q ss_pred             eeEEEEcCCCCEEEEecCCCcE----------EEE-------------EccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868          157 VLDMDFSLDSEFLATTSTDGSA----------RIW-------------KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i----------~iw-------------d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  213 (261)
                      .-.|.|+|+|++++.-..++.-          .+|             +..+++..+.+....+..++.++|+||++.+|
T Consensus       438 PDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlF  517 (524)
T PF05787_consen  438 PDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLF  517 (524)
T ss_pred             CCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECCCCCEEE
Confidence            4568899999876653322211          112             22234444444455566799999999999843

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.29  E-value=10  Score=33.38  Aligned_cols=68  Identities=21%  Similarity=0.356  Sum_probs=43.5

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d  140 (261)
                      ...++++.-+|.|+.++.+..||.+++|+........ +       -....+-..+.|...|  ++++..|+.+.-|.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i-------~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-I-------CEEAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-h-------hhhcCCccceeeeccc--eEEEeccchhheee
Confidence            3456778888999999999999999999997654311 1       1111223345555444  45555666666665

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=87.13  E-value=12  Score=28.71  Aligned_cols=171  Identities=17%  Similarity=0.124  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---------CcEEEEEEeCCccccceeeeeCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---------GGCKLFEVYGGATDINLLAKKMPP  108 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~~~~~~~~~  108 (261)
                      -|..+|+++..+..-++   ..+..........|.+.|+..+++...         +.+++|+...              
T Consensus       125 aI~R~dpkt~evt~f~l---p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--------------  187 (353)
T COG4257         125 AIGRLDPKTLEVTRFPL---PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--------------  187 (353)
T ss_pred             eeEEecCcccceEEeec---ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--------------
Confidence            45556665554321111   122234567788999999988876421         3344444432              


Q ss_pred             CCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe-ecccc-CCceeEEEEcCCCCEEEEecCCCcEEEEEccCC
Q 024868          109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-DEPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG  186 (261)
Q Consensus       109 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~  186 (261)
                         ....+.++..|||..-++.-.+..|-..|..++.... ..... +..-+.+.-+|.|+.-++....+.+.-||-.+.
T Consensus       188 ---G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~  264 (353)
T COG4257         188 ---GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             ---CCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence               2234678889999887776677777777766653211 11111 234566666788888888777788888887654


Q ss_pred             cEEEEEee-cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          187 VAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       187 ~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      .-+ ++.. .......++.....++.     -++--..|.|.-+|-++.
T Consensus       265 sW~-eypLPgs~arpys~rVD~~grV-----W~sea~agai~rfdpeta  307 (353)
T COG4257         265 SWI-EYPLPGSKARPYSMRVDRHGRV-----WLSEADAGAIGRFDPETA  307 (353)
T ss_pred             cce-eeeCCCCCCCcceeeeccCCcE-----EeeccccCceeecCcccc
Confidence            422 2221 11223455555555553     122233345666665543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.03  E-value=16  Score=30.09  Aligned_cols=154  Identities=10%  Similarity=0.077  Sum_probs=86.6

Q ss_pred             CCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-----CCCeEEEEecCCcEEEE
Q 024868           16 PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-----SGDDFVCSTTNGGCKLF   90 (261)
Q Consensus        16 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~   90 (261)
                      +.+...|++|+..|        .+..|+|.........  ...-..-..+|..++.-+     +...||+ -.-..+.+|
T Consensus        34 ~~~~d~IivGS~~G--------~LrIy~P~~~~~~~~~--lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY  102 (418)
T PF14727_consen   34 PSGSDKIIVGSYSG--------ILRIYDPSGNEFQPED--LLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVY  102 (418)
T ss_pred             CCCccEEEEecccc--------EEEEEccCCCCCCCcc--EEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEE
Confidence            34567899999999        8999999665542221  111222346788777642     3334555 456679999


Q ss_pred             EEeCCccc------cceeeeeCCCCCCCCCeEEEEEee----C-CcEEEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868           91 EVYGGATD------INLLAKKMPPLQDAGPQKCLSFSV----D-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (261)
Q Consensus        91 ~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~----~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  159 (261)
                      .+......      .++.......+  ......+..-|    . -.+|.+-+.||.+.+|+-+.-.-...+. ..--...
T Consensus       103 ~v~~~~g~~~~g~~~~L~~~yeh~l--~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~~llPgP  179 (418)
T PF14727_consen  103 SVSLVDGTVEHGNQYQLELIYEHSL--QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-DFLLPGP  179 (418)
T ss_pred             EEEecCCCcccCcEEEEEEEEEEec--ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-CCCCCcC
Confidence            88433221      11111111111  22334455544    2 2477888899999999865443222222 2222344


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEc
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKT  183 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~  183 (261)
                      +.+.|.-..+++++.+..+.-|..
T Consensus       180 l~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  180 LCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             eEEeecCCEEEEecCceeEEEecH
Confidence            677777777777776666666654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.70  E-value=10  Score=27.74  Aligned_cols=42  Identities=10%  Similarity=0.113  Sum_probs=29.3

Q ss_pred             EEEEecCCCcEEEEEccC--CcEEEEEeecCCCceEEEEEecCCCc
Q 024868          168 FLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      .|..+...+.|.+|++.+  .+...++..  -+.|..+.++..|.+
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDY   73 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDY   73 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccce
Confidence            343335567899999983  344555553  346999999999998

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.37  E-value=17  Score=29.76  Aligned_cols=134  Identities=11%  Similarity=0.057  Sum_probs=76.2

Q ss_pred             eEEEEEeeCCcEEEEeccCCeEE-EEEccCceEE--eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE---
Q 024868          115 QKCLSFSVDGSRFAAGGVDGHLR-IMHWPSLRII--LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---  188 (261)
Q Consensus       115 v~~~~~s~~~~~l~~~~~d~~i~-~~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~---  188 (261)
                      ...+..++|+.+++++ ..|.+. -||  .+...  .........+..+.|.+++..++++ .+|.+. +....++.   
T Consensus       241 f~~v~~~~dG~~~~vg-~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSPDGDYVAVS-SRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcCCCCEEEEE-CCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence            4456677888888877 445433 344  33321  1122233468999999999988776 445433 34444431   


Q ss_pred             --EEEEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee---eccCcCeeEEEEeeCCCEEe
Q 024868          189 --WTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       189 --~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~dg~~la  260 (261)
                        ....... ....+.++.|.+++..      ...+..|.+..-. ..|+.-...   .......+.+.|.++++..+
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~~------~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~  386 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKEA------WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFV  386 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCcE------EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEE
Confidence              2222211 1224888999988874      5666777665553 344432221   22345778999888776554

>PRK13614 lipoprotein LpqB; Provisional

Probab=86.07  E-value=21  Score=30.71  Aligned_cols=143  Identities=10%  Similarity=0.000  Sum_probs=0.0

Q ss_pred             CeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCC--cEEEEEccCCcE---
Q 024868          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVA---  188 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~---  188 (261)
                      .+.+++.++++..++....++ -.+|-...++.......... +...+|.++| .+-+...+.  .|....-.....   
T Consensus       344 ~~~s~avS~~g~~~A~~~~~~-~~l~~~~~g~~~~~~~~g~~-Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~  420 (573)
T PRK13614        344 GPASPAESPVSQTVAFLNGSR-TTLYTVSPGQPARALTSGST-LTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQ  420 (573)
T ss_pred             cccceeecCCCceEEEecCCC-cEEEEecCCCcceeeecCCC-ccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccc


Q ss_pred             ----EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC---CCeEEeeeeccC----cCeeEEEEeeCCC
Q 024868          189 ----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TWNKIGHKRLLR----KPASVLSISLDGK  257 (261)
Q Consensus       189 ----~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~---~~~~~~~~~~~~----~~v~~~~~s~dg~  257 (261)
                          ........+..|..+..|+||-.  +.+++......+|++--+.   .|++........    ..+.+++|..++.
T Consensus       421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R--~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~s  498 (573)
T PRK13614        421 APTVTLTADWLAGRTVKELRVSREGVR--ALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDST  498 (573)
T ss_pred             ccceeecccccCCCeeEEEEECCCccE--EEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCE


Q ss_pred             EEeC
Q 024868          258 YLAM  261 (261)
Q Consensus       258 ~la~  261 (261)
                      .++.
T Consensus       499 l~V~  502 (573)
T PRK13614        499 VVVT  502 (573)
T ss_pred             EEEE

>PLN02153 epithiospecifier protein

Probab=85.95  E-value=16  Score=29.08  Aligned_cols=28  Identities=14%  Similarity=0.358  Sum_probs=16.8

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCce
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSV   49 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   49 (261)
                      ..+++.||.++..   ..-.++.||+.+..+
T Consensus        86 ~~iyv~GG~~~~~---~~~~v~~yd~~t~~W  113 (341)
T PLN02153         86 TKLYIFGGRDEKR---EFSDFYSYDTVKNEW  113 (341)
T ss_pred             CEEEEECCCCCCC---ccCcEEEEECCCCEE
Confidence            3466677654321   122578889888766

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=85.70  E-value=6.4  Score=24.31  Aligned_cols=38  Identities=11%  Similarity=-0.062  Sum_probs=25.1

Q ss_pred             cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868          173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      ..+|.+.-||..+++....+.+- . -.+.+++++|++.+
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L-~-fpNGVals~d~~~v   71 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGL-Y-FPNGVALSPDESFV   71 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEE-S-SEEEEEE-TTSSEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCC-C-ccCeEEEcCCCCEE
Confidence            34678889999888764444432 3 37899999999973

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=85.54  E-value=17  Score=29.22  Aligned_cols=192  Identities=15%  Similarity=0.006  Sum_probs=90.4

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC  117 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~  117 (261)
                      +++.+|+++.......    .+......+..-.+..+|+ ++.++.++.++.+|..++..........     . ..+..
T Consensus        79 ~i~A~d~~~g~~~W~~----~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-----~-~~~~~  147 (370)
T COG1520          79 NIFALNPDTGLVKWSY----PLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-----S-PYYAS  147 (370)
T ss_pred             cEEEEeCCCCcEEecc----cCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-----C-eEEec
Confidence            7888888877631110    0110011122222222666 6677788888888886665433221111     0 01111


Q ss_pred             EEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC---CceeEEEEcCCCCEEEEecC--CCcEEEEEccCCcEEEEE
Q 024868          118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFL  192 (261)
Q Consensus       118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~  192 (261)
                      ...-.++ .+...+.++.+.-.+..+++.........   ..+..-....++ .++.+..  ++.+.-.|..+|+.....
T Consensus       148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeee
Confidence            1222233 33333367888888888787765533221   111111112233 3444444  566777788788776664


Q ss_pred             eecCCCceE---EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          193 TRNSDEKIE---LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       193 ~~~~~~~v~---~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      .......-.   .......+....--.+..++.++.+...|..+++.+-.+..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         226 KVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            322111000   01011111110000023455667788888888887765554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.36  E-value=21  Score=30.02  Aligned_cols=116  Identities=12%  Similarity=0.007  Sum_probs=61.1

Q ss_pred             EEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC---ceeEEEEcCCCCEEEEecC-------------CCcEEEE
Q 024868          118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK---SVLDMDFSLDSEFLATTST-------------DGSARIW  181 (261)
Q Consensus       118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~-------------d~~i~iw  181 (261)
                      +...++|.+++...  ..+..+|+. |+.+....-..+   .=..+..-|+|++|+.+..             ...|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            55667888776654  778888864 554333222121   1356778899998887761             1246666


Q ss_pred             EccCCcEEEEEee--cC----C--------------------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          182 KTEDGVAWTFLTR--NS----D--------------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       182 d~~~~~~~~~~~~--~~----~--------------------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      | .+|+.+..+..  +.    .                    ..+.++.+.+....+    ++++.....|...|.++++
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~i----ivSsR~~s~V~~Id~~t~~  304 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSI----IVSSRHQSAVIKIDYRTGK  304 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEE----EEEETTT-EEEEEE-TTS-
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeE----EEEcCcceEEEEEECCCCc
Confidence            7 67776665431  00    0                    137889999944442    5666666689999988887


Q ss_pred             EEeeee
Q 024868          236 KIGHKR  241 (261)
Q Consensus       236 ~~~~~~  241 (261)
                      ....+.
T Consensus       305 i~Wilg  310 (477)
T PF05935_consen  305 IKWILG  310 (477)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            664443

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-06

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 25/181 (13%)
Query: 34  PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
           P+++++   +P+T+ VY    +     + EGD                    G    E  
Sbjct: 568 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 605
Query: 94  GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
              T  NL    + P  DA    C  FS DG R A+ G D  L++    +   +LD    
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 663
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
              VL   FS D  ++AT S D   +IW +  G        +S E++  C F+       
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 722
Query: 214 L 214
           L
Sbjct: 723 L 723

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 25/181 (13%)
Query: 34  PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
           P+++++   +P+T+ VY    +     + EGD                    G    E  
Sbjct: 561 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 598
Query: 94  GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
              T  NL    + P  DA    C  FS DG R A+ G D  L++    +   +LD    
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 656
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
              VL   FS D  ++AT S D   +IW +  G        +S E++  C F+       
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 715
Query: 214 L 214
           L
Sbjct: 716 L 716

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.69
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.68
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.65
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.6
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.58
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.55
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.49
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.48
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.46
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.45
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.44
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.4
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.39
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.38
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.33
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.31
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.31
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.3
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.26
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.21
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.18
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.15
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.15
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.13
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.13
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.09
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.04
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.02
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.01
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.98
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.97
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.97
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.97
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.96
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.94
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.92
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.91
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.89
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.88
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.87
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.87
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.86
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.81
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.81
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.8
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.78
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.78
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.75
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.75
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.74
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.73
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.72
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.72
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.67
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.65
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.63
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.63
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.57
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.51
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.45
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.4
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.4
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.39
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.38
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.36
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.35
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.28
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.27
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.27
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.26
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.25
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.21
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.19
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.19
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.12
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.06
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.98
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.92
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.91
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.91
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.86
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.85
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.76
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.73
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.71
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.66
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.64
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.63
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.63
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.61
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.52
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.51
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.49
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.47
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.47
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.44
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.44
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.39
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.36
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.31
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.28
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.18
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.04
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.02
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.01
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.89
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.81
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.72
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.5
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.49
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.33
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.23
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.1
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.0
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.98
3ott_A	758	Two-component system sensor histidine kinase; beta	95.95
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.21
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.67
3ott_A	758	Two-component system sensor histidine kinase; beta	93.96
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.46
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.08
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	91.85
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.95
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	89.64
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	87.6
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.38

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=256.23  Aligned_cols=228  Identities=18%  Similarity=0.204  Sum_probs=203.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.+++|+++   ..++++|+.|+        .|..||..+...      ...+..|...+.+++|+|++++|++++.
T Consensus        80 ~~~v~~~~~~~~---~~~l~s~s~D~--------~i~lWd~~~~~~------~~~~~~~~~~~~~~~~spdg~~l~~g~~  142 (321)
T 3ow8_A           80 QLGVVSVDISHT---LPIAASSSLDA--------HIRLWDLENGKQ------IKSIDAGPVDAWTLAFSPDSQYLATGTH  142 (321)
T ss_dssp             SSCEEEEEECSS---SSEEEEEETTS--------EEEEEETTTTEE------EEEEECCTTCCCCEEECTTSSEEEEECT
T ss_pred             CCCEEEEEECCC---CCEEEEEeCCC--------cEEEEECCCCCE------EEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence            467999999885   56899999999        999999887764      4567788889999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      ++.+++|++.++.....       ...+...+.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+
T Consensus       143 dg~v~i~~~~~~~~~~~-------~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s  215 (321)
T 3ow8_A          143 VGKVNIFGVESGKKEYS-------LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS  215 (321)
T ss_dssp             TSEEEEEETTTCSEEEE-------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC
T ss_pred             CCcEEEEEcCCCceeEE-------ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEc
Confidence            99999999987764221       12245679999999999999999999999999999999888888888899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  243 (261)
                      |++++|++++.|+.|++||+++++....+..|.. .|.+++|+|++++     +++++.|++|++||+++++.+..+..|
T Consensus       216 pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~-----l~s~s~D~~v~iwd~~~~~~~~~~~~h  289 (321)
T 3ow8_A          216 PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS-WVLNVAFCPDDTH-----FVSSSSDKSVKVWDVGTRTCVHTFFDH  289 (321)
T ss_dssp             TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC-ceEEEEECCCCCE-----EEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence            9999999999999999999999999988887765 6999999999998     689999999999999999999888899


Q ss_pred             CcCeeEEEEeeCCCEEeC
Q 024868          244 RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       244 ~~~v~~~~~s~dg~~la~  261 (261)
                      ...|.+++|+|+|++|++
T Consensus       290 ~~~v~~v~~s~~g~~l~s  307 (321)
T 3ow8_A          290 QDQVWGVKYNGNGSKIVS  307 (321)
T ss_dssp             SSCEEEEEECTTSSEEEE
T ss_pred             CCcEEEEEECCCCCEEEE
Confidence            999999999999998874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.2e-40  Score=255.86  Aligned_cols=234  Identities=17%  Similarity=0.194  Sum_probs=197.8

Q ss_pred             CCceeeEEEEEeeC-CcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            3 GGGTVTCGSWIKRP-ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      ...+|++++|+|+. ....++++|+.|+        .+..|+......    .....+.+|...|.+++|+|++..++++
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~--------~v~vW~~~~~~~----~~~~~l~gh~~~v~~~~~~~~~~~l~s~   98 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGSLDD--------LVKVWKWRDERL----DLQWSLEGHQLGVVSVDISHTLPIAASS   98 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEETTS--------CEEEEEEETTEE----EEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEcCCC--------CEEEEECCCCCe----eeeeeeccCCCCEEEEEECCCCCEEEEE
Confidence            36899999998863 2356899999999        555555444332    2245688999999999999999999999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      +.|++|++||+.+++....+       ..+...+.+++|+|++++|++++.|+.+++|++++++....+..+...+.+++
T Consensus        99 s~D~~i~lWd~~~~~~~~~~-------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSI-------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA  171 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEE-------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred             eCCCcEEEEECCCCCEEEEE-------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence            99999999999887642211       12346788899999999999999999999999999988777777777899999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      |+|++++|++++.|+.|++||+++++.+..+..|.. +|.+++|+|++++     +++++.|+.|++||+++++.+..+.
T Consensus       172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~-----l~s~s~dg~i~iwd~~~~~~~~~~~  245 (321)
T 3ow8_A          172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQL-----LVTASDDGYIKIYDVQHANLAGTLS  245 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCE-----EEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCE-----EEEEcCCCeEEEEECCCcceeEEEc
Confidence            999999999999999999999999999999887755 6999999999998     7899999999999999999888888


Q ss_pred             ccCcCeeEEEEeeCCCEEeC
Q 024868          242 LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       242 ~~~~~v~~~~~s~dg~~la~  261 (261)
                      .|...|.+++|+|+|++|++
T Consensus       246 ~h~~~v~~~~~sp~~~~l~s  265 (321)
T 3ow8_A          246 GHASWVLNVAFCPDDTHFVS  265 (321)
T ss_dssp             CCSSCEEEEEECTTSSEEEE
T ss_pred             CCCCceEEEEECCCCCEEEE
Confidence            99999999999999999874

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.9e-40  Score=256.77  Aligned_cols=229  Identities=13%  Similarity=0.070  Sum_probs=187.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|++++|+|+    ..+++|+.++        .|..||..+++.  .......+.+|.+.|.+++|+|++++|++++.
T Consensus        82 ~~~v~~~~~s~d----~~l~~~s~dg--------~v~lWd~~~~~~--~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~  147 (344)
T 4gqb_B           82 EAGVADLTWVGE----RGILVASDSG--------AVELWELDENET--LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK  147 (344)
T ss_dssp             SSCEEEEEEETT----TEEEEEETTS--------EEEEEEECTTSS--CEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEEeCC----CeEEEEECCC--------EEEEEeccCCCc--eeEeeccccCCCCCEEEEEECCCCCEEEEEeC
Confidence            357999999985    3678888999        788888776543  11223456789999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEeeccc--cCCceeEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVLDM  160 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~v~~~  160 (261)
                      |++|++||+.+++...       ....|...|.+++|+|++. +|++++.|++|++||+++++....+..  +...+.++
T Consensus       148 d~~i~iwd~~~~~~~~-------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  220 (344)
T 4gqb_B          148 DICIKVWDLAQQVVLS-------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSL  220 (344)
T ss_dssp             TSCEEEEETTTTEEEE-------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEE
T ss_pred             CCeEEEEECCCCcEEE-------EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceee
Confidence            9999999998876421       1224678999999999874 788999999999999999887665543  33468999


Q ss_pred             EEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          161 DFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       161 ~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      +|+|+ +++|++++.|+.|++||+++++++..+..|.. .|++++|+|++..+    +++++.|++|++||+++++.+ .
T Consensus       221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~fsp~g~~~----lasgs~D~~i~vwd~~~~~~~-~  294 (344)
T 4gqb_B          221 AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ-CVTGLVFSPHSVPF----LASLSEDCSLAVLDSSLSELF-R  294 (344)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS-CEEEEEECSSSSCC----EEEEETTSCEEEECTTCCEEE-E
T ss_pred             eecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC-CEEEEEEccCCCeE----EEEEeCCCeEEEEECCCCcEE-E
Confidence            99994 67889999999999999999999999988766 69999999998642    688999999999999998866 4


Q ss_pred             eeccCcCeeEEEEeeCCCEE
Q 024868          240 KRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~dg~~l  259 (261)
                      +..|...|.+++|+|+++.|
T Consensus       295 ~~~H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          295 SQAHRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             ECCCSSCEEEEEECSSSTTE
T ss_pred             EcCCCCCEEEEEEeCCCCeE
Confidence            67899999999999998754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.5e-40  Score=251.45  Aligned_cols=229  Identities=10%  Similarity=0.079  Sum_probs=198.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|++++|+|+   ..++++|+.++        .+..||..+...      ...+..|...|.+++|+|++++|++++.
T Consensus        13 ~~~V~~~~fsp~---~~~l~s~~~dg--------~v~lWd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~s~   75 (304)
T 2ynn_A           13 SDRVKGIDFHPT---EPWVLTTLYSG--------RVELWNYETQVE------VRSIQVTETPVRAGKFIARKNWIIVGSD   75 (304)
T ss_dssp             CSCEEEEEECSS---SSEEEEEETTS--------EEEEEETTTTEE------EEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEECCC---CCEEEEEcCCC--------cEEEEECCCCce------eEEeeccCCcEEEEEEeCCCCEEEEECC
Confidence            578999999996   56899999999        899999887664      5567889999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-EeeccccCCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~  162 (261)
                      |++|++||+.+++....       ...|...|.+++|+|++++|++++.|++|++||++++.. ...+..|...|.+++|
T Consensus        76 d~~i~vwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~  148 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVD-------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (304)
T ss_dssp             TSEEEEEETTTCCEEEE-------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred             CCEEEEEECCCCcEEEE-------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence            99999999988764221       224668899999999999999999999999999988743 3455667778999999


Q ss_pred             cC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec--CCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       163 s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      +| ++.+|++++.|+.|++||++++++...+..++...+..+.|+|  ++++     +++++.|++|++||+++++.+..
T Consensus       149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~s~s~D~~i~iWd~~~~~~~~~  223 (304)
T 2ynn_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVAT  223 (304)
T ss_dssp             CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE-----EEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE-----EEEEcCCCeEEEEeCCCCcccee
Confidence            99 6789999999999999999988877777666555699999987  5566     68999999999999999999999


Q ss_pred             eeccCcCeeEEEEeeCCCEEeC
Q 024868          240 KRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +..|...|.+++|+|++++|++
T Consensus       224 ~~~h~~~v~~~~~~p~~~~l~s  245 (304)
T 2ynn_A          224 LEGHMSNVSFAVFHPTLPIIIS  245 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEE
T ss_pred             eCCCCCCEEEEEECCCCCEEEE
Confidence            9999999999999999998874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.5e-40  Score=261.62  Aligned_cols=228  Identities=13%  Similarity=0.116  Sum_probs=202.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .++|+|++|+|+   ..++++|+.|+        .|..||..++..      ...+.+|.+.|.+++|+|++++|++|+.
T Consensus       108 ~~~V~~~~~~p~---~~~l~s~s~Dg--------~i~vwd~~~~~~------~~~l~~h~~~V~~v~~~~~~~~l~sgs~  170 (410)
T 1vyh_C          108 RSPVTRVIFHPV---FSVMVSASEDA--------TIKVWDYETGDF------ERTLKGHTDSVQDISFDHSGKLLASCSA  170 (410)
T ss_dssp             SSCEEEEEECSS---SSEEEEEESSS--------CEEEEETTTCCC------CEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEEcCC---CCEEEEEeCCC--------eEEEEECCCCcE------EEEEeccCCcEEEEEEcCCCCEEEEEeC
Confidence            578999999996   56899999999        888888877665      4568899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |++|++||+.+....       .....|...|.+++|+|++++|++++.|++|++||++++..+..+..|...|.++.|+
T Consensus       171 D~~i~iwd~~~~~~~-------~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  243 (410)
T 1vyh_C          171 DMTIKLWDFQGFECI-------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN  243 (410)
T ss_dssp             TSCCCEEETTSSCEE-------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             CCeEEEEeCCCCcee-------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC
Confidence            999999999876541       1223456789999999999999999999999999999999888888888899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecC--------------------CCcceEEEEEeeCCC
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD--------------------GTKPFLFCTVQRGDK  223 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~--------------------~~~~~~~~~~~~~~d  223 (261)
                      |++++|++++.|+.|++||+.++++...+..|.. .|.+++|+|+                    |.+     +++++.|
T Consensus       244 ~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----l~sgs~D  317 (410)
T 1vyh_C          244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPF-----LLSGSRD  317 (410)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCE-----EEEEETT
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCE-----EEEEeCC
Confidence            9999999999999999999999999988887765 6999999997                    444     6889999


Q ss_pred             cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +.|++||+++++.+..+..|...|.+++|+|+|++|++
T Consensus       318 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  355 (410)
T 1vyh_C          318 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS  355 (410)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             CeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEE
Confidence            99999999999999888999999999999999998873

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-39  Score=258.55  Aligned_cols=228  Identities=15%  Similarity=0.178  Sum_probs=202.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|++++|+|+   ..++++|+.|+        .|..||..+...      ...+.+|...|.+++|+|++++|++++.
T Consensus       150 ~~~V~~v~~~~~---~~~l~sgs~D~--------~i~iwd~~~~~~------~~~~~~h~~~V~~v~~~p~~~~l~s~s~  212 (410)
T 1vyh_C          150 TDSVQDISFDHS---GKLLASCSADM--------TIKLWDFQGFEC------IRTMHGHDHNVSSVSIMPNGDHIVSASR  212 (410)
T ss_dssp             SSCEEEEEECTT---SSEEEEEETTS--------CCCEEETTSSCE------EECCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCcEEEEEEcCC---CCEEEEEeCCC--------eEEEEeCCCCce------eEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence            578999999985   56899999999        777788776654      5578899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |++|++||+.++.....       ...|...|.++.|+|++++|++++.|+.|++||+.+++....+..|...|.+++|+
T Consensus       213 D~~i~~wd~~~~~~~~~-------~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~  285 (410)
T 1vyh_C          213 DKTIKMWEVQTGYCVKT-------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA  285 (410)
T ss_dssp             TSEEEEEETTTCCEEEE-------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             CCeEEEEECCCCcEEEE-------EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEc
Confidence            99999999988764221       12356789999999999999999999999999999998887888888899999999


Q ss_pred             CC--------------------CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC
Q 024868          164 LD--------------------SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (261)
Q Consensus       164 ~~--------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d  223 (261)
                      |+                    +.+|++++.|+.|++||+++++++..+..|.. .|++++|+|+|++     +++++.|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~-----l~s~s~D  359 (410)
T 1vyh_C          286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKF-----ILSCADD  359 (410)
T ss_dssp             CSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSC-----EEEEETT
T ss_pred             CcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCE-----EEEEeCC
Confidence            96                    67899999999999999999999999987765 6999999999998     6899999


Q ss_pred             cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +.|++||+++++.+..+..|...|.+++|+|++++||+
T Consensus       360 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  397 (410)
T 1vyh_C          360 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT  397 (410)
T ss_dssp             TEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             CeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEE
Confidence            99999999999988888999999999999999998874

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.9e-38  Score=244.24  Aligned_cols=225  Identities=17%  Similarity=0.228  Sum_probs=194.6

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.+++|+|+   .+++++|+.++        .|..||..++..      ...+.+|.+.|.+++|+|++++|++++.
T Consensus        55 ~~~v~~~~~~~~---~~~l~s~s~d~--------~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~sgs~  117 (304)
T 2ynn_A           55 ETPVRAGKFIAR---KNWIIVGSDDF--------RIRVFNYNTGEK------VVDFEAHPDYIRSIAVHPTKPYVLSGSD  117 (304)
T ss_dssp             SSCEEEEEEEGG---GTEEEEEETTS--------EEEEEETTTCCE------EEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCcEEEEEEeCC---CCEEEEECCCC--------EEEEEECCCCcE------EEEEeCCCCcEEEEEEcCCCCEEEEECC
Confidence            578999999996   67899999999        899999887765      5678899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeecccc-CCceeEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMD  161 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~  161 (261)
                      |++|++||+.++.....      ....|...|.+++|+| ++.+|++++.|++|++||+++.........+ ...+..+.
T Consensus       118 D~~v~lWd~~~~~~~~~------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~  191 (304)
T 2ynn_A          118 DLTVKLWNWENNWALEQ------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD  191 (304)
T ss_dssp             TSCEEEEEGGGTTEEEE------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEE
T ss_pred             CCeEEEEECCCCcchhh------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEE
Confidence            99999999987643111      1224567899999999 6789999999999999999877654444433 35789999


Q ss_pred             EcC--CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          162 FSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       162 ~s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      |+|  ++++|++++.|+.|++||+++++++..+..|.. .|.+++|+|++++     +++++.||+|++||+++++.+..
T Consensus       192 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~-----l~s~s~Dg~i~iWd~~~~~~~~~  265 (304)
T 2ynn_A          192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPI-----IISGSEDGTLKIWNSSTYKVEKT  265 (304)
T ss_dssp             ECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSE-----EEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC-CEEEEEECCCCCE-----EEEEcCCCeEEEEECCCCceeee
Confidence            987  778999999999999999999999999988766 5999999999997     78999999999999999999988


Q ss_pred             eeccCcCeeEEEEeeCCC
Q 024868          240 KRLLRKPASVLSISLDGK  257 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~dg~  257 (261)
                      +..+...+.+++|+|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~  283 (304)
T 2ynn_A          266 LNVGLERSWCIATHPTGR  283 (304)
T ss_dssp             ECCSSSSEEEEEECTTCG
T ss_pred             ccCCCccEEEEEECCCCC
Confidence            888889999999999885

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.1e-38  Score=245.97  Aligned_cols=231  Identities=16%  Similarity=0.231  Sum_probs=197.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .++|++++|+|+   ..++++|+.|+        .+..||..+...      ...+..|...|.+++|+|++++|++++.
T Consensus        55 ~~~v~~~~~s~d---~~~l~s~s~Dg--------~v~iWd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~s~~~  117 (340)
T 1got_B           55 LAKIYAMHWGTD---SRLLLSASQDG--------KLIIWDSYTTNK------VHAIPLRSSWVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             SSCEEEEEECTT---SSEEEEEETTT--------EEEEEETTTCCE------EEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CCceEEEEECCC---CCEEEEEeCCC--------cEEEEECCCCCc------ceEeecCCccEEEEEECCCCCEEEEEeC
Confidence            579999999985   56899999999        899999877654      5567889999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |+.+++|++.+........   .....|.+.+.++.|++++. +++++.|+.|++||+++++.+..+..|...|.+++|+
T Consensus       118 d~~v~iw~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  193 (340)
T 1got_B          118 DNICSIYNLKTREGNVRVS---RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             TCEEEEEETTTCSBSCEEE---EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCeEEEEECccCCCcceeE---EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence            9999999997754322211   11234568899999999876 7888899999999999999888888888899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  243 (261)
                      |+++++++++.|+.|++||+++++++..+..|.. .|.+++|+|++++     +++++.|++|++||+++++.+..+...
T Consensus       194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~-----l~s~s~d~~v~iwd~~~~~~~~~~~~~  267 (340)
T 1got_B          194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNA-----FATGSDDATCRLFDLRADQELMTYSHD  267 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCE-----EEEEcCCCcEEEEECCCCcEEEEEccC
Confidence            9999999999999999999999999999887765 6999999999998     689999999999999998877555422


Q ss_pred             --CcCeeEEEEeeCCCEEeC
Q 024868          244 --RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       244 --~~~v~~~~~s~dg~~la~  261 (261)
                        ...+.+++|+|+|++|++
T Consensus       268 ~~~~~v~~~~~s~~g~~l~~  287 (340)
T 1got_B          268 NIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             TCCSCEEEEEECTTSSEEEE
T ss_pred             CcccceEEEEECCCCCEEEE
Confidence              247999999999999874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.6e-38  Score=246.34  Aligned_cols=232  Identities=17%  Similarity=0.149  Sum_probs=198.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.+++|+|+   ..++++|+.++        .+..|+..+...  .......+.+|.+.|.++.|++++. +++++.
T Consensus        97 ~~~v~~~~~s~~---~~~l~s~~~d~--------~v~iw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~  162 (340)
T 1got_B           97 SSWVMTCAYAPS---GNYVACGGLDN--------ICSIYNLKTREG--NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG  162 (340)
T ss_dssp             SSCEEEEEECTT---SSEEEEEETTC--------EEEEEETTTCSB--SCEEEEEEECCSSCEEEEEEEETTE-EEEEET
T ss_pred             CccEEEEEECCC---CCEEEEEeCCC--------eEEEEECccCCC--cceeEEEecCCCccEEEEEECCCCc-EEEEEC
Confidence            467999999995   56899999999        888888765431  1223456789999999999998875 888999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |++|++||+.++....       ....|...|.+++|+|+++++++++.|+.|++||+++++....+..|...|.+++|+
T Consensus       163 d~~i~~wd~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~  235 (340)
T 1got_B          163 DTTCALWDIETGQQTT-------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF  235 (340)
T ss_dssp             TSCEEEEETTTTEEEE-------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred             CCcEEEEECCCCcEEE-------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc
Confidence            9999999998876421       112356789999999999999999999999999999998888888888899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      |++++|++++.|+.|++||+++++.+..+..+. ...+.+++|+|+|++     +++++.|+.|++||+.+++.+..+..
T Consensus       236 p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~g~~d~~i~vwd~~~~~~~~~~~~  310 (340)
T 1got_B          236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-----LLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE-----EEEECCCCeEEEEEcccCcEeeEeec
Confidence            999999999999999999999998877765322 235999999999998     68999999999999999999888999


Q ss_pred             cCcCeeEEEEeeCCCEEeC
Q 024868          243 LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la~  261 (261)
                      |...|.+++|+|||++||+
T Consensus       311 h~~~v~~~~~s~dg~~l~s  329 (340)
T 1got_B          311 HDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             CSSCEEEEEECTTSSCEEE
T ss_pred             CCCcEEEEEEcCCCCEEEE
Confidence            9999999999999999874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.2e-37  Score=239.06  Aligned_cols=234  Identities=14%  Similarity=0.203  Sum_probs=197.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|++++|+|+   ..++++|+.++        .+..|+..+...      ...+.+|...|.+++|+|++++|++++.
T Consensus        23 ~~~v~~~~~s~~---~~~l~s~~~dg--------~i~iw~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~~   85 (312)
T 4ery_A           23 TKAVSSVKFSPN---GEWLASSSADK--------LIKIWGAYDGKF------EKTISGHKLGISDVAWSSDSNLLVSASD   85 (312)
T ss_dssp             SSCEEEEEECTT---SSEEEEEETTS--------CEEEEETTTCCE------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEECCC---CCEEEEeeCCC--------eEEEEeCCCccc------chhhccCCCceEEEEEcCCCCEEEEECC
Confidence            578999999995   56899999999        788888876654      5567899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |+.|++||+.+++....       ...|...|.+++|+|++++|++++.|+.|++||+++++....+..|..+|.+++|+
T Consensus        86 d~~i~vwd~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  158 (312)
T 4ery_A           86 DKTLKIWDVSSGKCLKT-------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN  158 (312)
T ss_dssp             TSEEEEEETTTCCEEEE-------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEEECCCCcEEEE-------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence            99999999987764221       12356789999999999999999999999999999998888888888899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE----------------------------
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF----------------------------  215 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~----------------------------  215 (261)
                      |++++|++++.|+.|++||+++++.+..+......++..++|+|++++++..                            
T Consensus       159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  238 (312)
T 4ery_A          159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY  238 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE
Confidence            9999999999999999999999998887765555568888999887752111                            


Q ss_pred             ------------EEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          216 ------------CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       216 ------------~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                                  .+++++.||.|++||+++++.+..+..|...|.+++|+|++++|++
T Consensus       239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  296 (312)
T 4ery_A          239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS  296 (312)
T ss_dssp             CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence                        1355677888888888888877777888889999999999998873

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.9e-38  Score=245.60  Aligned_cols=235  Identities=14%  Similarity=0.136  Sum_probs=196.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ...|.+++|+|+   ..++++|+.++        .+..|+...............+..|.+.|.+++|+|+++.|++++.
T Consensus       106 ~~~v~~~~~sp~---g~~lasg~~d~--------~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~  174 (354)
T 2pbi_B          106 CTWVMACAYAPS---GCAIACGGLDN--------KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG  174 (354)
T ss_dssp             SSCCCEEEECTT---SSEEEEESTTS--------EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCEEEEEECCC---CCEEEEeeCCC--------CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence            456889999996   66899999998        6777765432211111223456789999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      |++|++||+.+++....       ...|...|.+++|+|  ++++|++++.|+.|++||+++++.+..+..|...|.+++
T Consensus       175 D~~v~lwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~  247 (354)
T 2pbi_B          175 DGTCALWDVESGQLLQS-------FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR  247 (354)
T ss_dssp             TSEEEEEETTTCCEEEE-------EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CCcEEEEeCCCCeEEEE-------EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEE
Confidence            99999999988764211       123567899999988  578999999999999999999998888888888999999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      |+|++++|++++.|+.|++||+++++.+..+..+. ...+.+++|+|+|++     +++++.|+.|++||+.+++.+..+
T Consensus       248 ~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-----l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          248 YYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL-----LFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE-----EEEEECCCcEEEEECCCCceEEEE
Confidence            99999999999999999999999988777665432 235889999999998     688999999999999999988888


Q ss_pred             eccCcCeeEEEEeeCCCEEeC
Q 024868          241 RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       241 ~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ..|...|.+++|+|||++||+
T Consensus       323 ~~h~~~v~~l~~spdg~~l~s  343 (354)
T 2pbi_B          323 FGHENRVSTLRVSPDGTAFCS  343 (354)
T ss_dssp             CCCSSCEEEEEECTTSSCEEE
T ss_pred             ECCCCcEEEEEECCCCCEEEE
Confidence            899999999999999999874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-37  Score=241.34  Aligned_cols=233  Identities=12%  Similarity=0.120  Sum_probs=195.0

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|++++|+|+  ..+++++|+.|+        .+..|+...... ........+.+|...|.+++|+|++++|++++
T Consensus        16 H~~~V~~l~~~~~--~~~~l~s~s~D~--------~v~~W~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A           16 HNGWVTSLATSAG--QPNLLLSASRDK--------TLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             CSSCEEEEEECSS--CTTEEEEEETTS--------EEEEEEEEEETT-EEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccceEEEEEccCC--CccEEEEecCCc--------cEEEecCCCCCc-cccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            3689999999985  257899999999        777777643211 01123456889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .|++|++||+.+++...       ....|...|.+++|+|++++|++++.|++|++||++. +.+..+..|...+.++.|
T Consensus        85 ~D~~v~~wd~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~  156 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQ-------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV  156 (319)
T ss_dssp             TTSEEEEEETTTTEEEE-------EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEEECCCCCeeE-------EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEE
Confidence            99999999998876422       1234678899999999999999999999999999864 455677778889999999


Q ss_pred             cCC------CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          163 SLD------SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       163 s~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      +|.      +..+++++.|+.|++||+++++....+..|.. .|.+++|+|+|++     +++++.|+.|++||+++++.
T Consensus       157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~-----l~s~~~dg~i~iwd~~~~~~  230 (319)
T 3frx_A          157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTL-----IASAGKDGEIMLWNLAAKKA  230 (319)
T ss_dssp             CCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSE-----EEEEETTCEEEEEETTTTEE
T ss_pred             ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCcE
Confidence            985      44899999999999999999998888887765 6999999999998     78999999999999999998


Q ss_pred             EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          237 IGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +..+.. ...+.+++|+|++.+|++
T Consensus       231 ~~~~~~-~~~v~~~~~sp~~~~la~  254 (319)
T 3frx_A          231 MYTLSA-QDEVFSLAFSPNRYWLAA  254 (319)
T ss_dssp             EEEEEC-CSCEEEEEECSSSSEEEE
T ss_pred             EEEecC-CCcEEEEEEcCCCCEEEE
Confidence            876664 468999999999998873

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-37  Score=245.05  Aligned_cols=225  Identities=15%  Similarity=0.211  Sum_probs=190.9

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      .|.+++|+|+   ..++++|+.++        .|..||..+...      ...+.+|...|.+++|+|++++|++++.|+
T Consensus       125 ~v~~v~~s~d---g~~l~s~~~d~--------~i~iwd~~~~~~------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~  187 (393)
T 1erj_A          125 YIRSVCFSPD---GKFLATGAEDR--------LIRIWDIENRKI------VMILQGHEQDIYSLDYFPSGDKLVSGSGDR  187 (393)
T ss_dssp             BEEEEEECTT---SSEEEEEETTS--------CEEEEETTTTEE------EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEECCC---CCEEEEEcCCC--------eEEEEECCCCcE------EEEEccCCCCEEEEEEcCCCCEEEEecCCC
Confidence            4899999985   56899999999        888889877664      567889999999999999999999999999


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeec-------cccCCce
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE-------PKAHKSV  157 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------~~~~~~v  157 (261)
                      +|++||+.+++..        ..+.+...+.+++|+| ++++|++++.|+.|++||+++++.+..+       ..|...|
T Consensus       188 ~v~iwd~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v  259 (393)
T 1erj_A          188 TVRIWDLRTGQCS--------LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV  259 (393)
T ss_dssp             EEEEEETTTTEEE--------EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred             cEEEEECCCCeeE--------EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence            9999999887642        2223456799999999 8999999999999999999988765544       3566789


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEEccCC------------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868          158 LDMDFSLDSEFLATTSTDGSARIWKTEDG------------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~  225 (261)
                      .+++|+|++++|++++.|+.|++||+++.            .+...+..|.. .|.+++|+|++++     +++++.|+.
T Consensus       260 ~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~-----l~sgs~D~~  333 (393)
T 1erj_A          260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEY-----ILSGSKDRG  333 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS-CEEEEEECGGGCE-----EEEEETTSE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCE-----EEEEeCCCe
Confidence            99999999999999999999999999753            34455666655 6999999999998     689999999


Q ss_pred             EEEEECCCCeEEeeeeccCcCeeEEEEee------CCCEEeC
Q 024868          226 LAVYDISTWNKIGHKRLLRKPASVLSISL------DGKYLAM  261 (261)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~------dg~~la~  261 (261)
                      |++||+++++.+..+..|...|.+++|++      ++++||+
T Consensus       334 v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s  375 (393)
T 1erj_A          334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT  375 (393)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence            99999999999888899999999999986      6777763

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.2e-37  Score=240.15  Aligned_cols=235  Identities=18%  Similarity=0.237  Sum_probs=196.9

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|+|++|+|+   ..++++|+.|+        .+..||..+...      ...+..|...|.+++|+|+++.|++++
T Consensus        63 H~~~V~~~~~s~d---~~~l~s~s~Dg--------~v~vWd~~~~~~------~~~~~~~~~~v~~~~~sp~g~~lasg~  125 (354)
T 2pbi_B           63 HGNKVLCMDWCKD---KRRIVSSSQDG--------KVIVWDSFTTNK------EHAVTMPCTWVMACAYAPSGCAIACGG  125 (354)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEETTS--------EEEEEETTTCCE------EEEEECSSSCCCEEEECTTSSEEEEES
T ss_pred             CCCeEEEEEECCC---CCEEEEEeCCC--------eEEEEECCCCCc------ceEEecCCCCEEEEEECCCCCEEEEee
Confidence            3578999999985   56899999999        899999876654      456777888999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .|+.+++|++......... ........|...|.+++|+|+++.|++++.|++|++||+++++.+..+..|...|.+++|
T Consensus       126 ~d~~i~v~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~  204 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMA-AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDL  204 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSG-GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCCEEEEEEecccccccc-ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE
Confidence            9999999998654321100 000111235688999999999999999999999999999999988888888889999999


Q ss_pred             cC--CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          163 SL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       163 s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      +|  ++++|++++.|+.|++||+++++++..+..|.. .|.+++|+|++++     +++++.|++|++||+++++.+..+
T Consensus       205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~-----l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDA-----FASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCcEEEEE
Confidence            87  578999999999999999999999998887765 6999999999998     689999999999999998876555


Q ss_pred             ecc--CcCeeEEEEeeCCCEEeC
Q 024868          241 RLL--RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       241 ~~~--~~~v~~~~~s~dg~~la~  261 (261)
                      ..+  ...+.+++|+|+|++|++
T Consensus       279 ~~~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          279 SKESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEE
T ss_pred             cCCCcccceeEEEEeCCCCEEEE
Confidence            433  246889999999999874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1e-37  Score=245.24  Aligned_cols=231  Identities=12%  Similarity=0.091  Sum_probs=182.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ...|++++|+|+   . .+++++.++        .|..||..+++...  .......+|.+.|.+++|+|++++|++++.
T Consensus        94 ~~~V~~~~~s~d---~-~~l~~s~dg--------~v~lWd~~~~~~~~--~~~~~~~~h~~~V~~v~~spdg~~l~sgs~  159 (357)
T 4g56_B           94 EAGVTDVAWVSE---K-GILVASDSG--------AVELWEILEKESLL--VNKFAKYEHDDIVKTLSVFSDGTQAVSGGK  159 (357)
T ss_dssp             SSCEEEEEEETT---T-EEEEEETTS--------CEEEC--------C--CCCEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCEEEEEEcCC---C-CEEEEECCC--------EEEEeeccccceeE--EEeeccCCCCCCEEEEEECCCCCEEEEEeC
Confidence            456999999985   3 355566778        67778876654311  122345689999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEeecc--ccCCceeEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEP--KAHKSVLDM  160 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~  160 (261)
                      |+.|++||+.++.....       ...|...|.+++|+|++. ++++++.|+.|++||+++++......  .+...+.++
T Consensus       160 dg~v~iwd~~~~~~~~~-------~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v  232 (357)
T 4g56_B          160 DFSVKVWDLSQKAVLKS-------YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSV  232 (357)
T ss_dssp             TSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEE
T ss_pred             CCeEEEEECCCCcEEEE-------EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccch
Confidence            99999999988764211       123568899999999875 78899999999999999887654433  344579999


Q ss_pred             EEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          161 DFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       161 ~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      +|+|+ +.+|++++.|+.|++||+++++++..+..+.. .|++++|+|+++.+    +++++.|++|++||+++++.+..
T Consensus       233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~----lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          233 TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ-NITGLAYSYHSSPF----LASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             EECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS-CEEEEEECSSSSCC----EEEEETTSCEEEECTTSCEEEEE
T ss_pred             hhhhcccceEEEeecccceeEEECCCCcEeEEEeccce-eEEEEEEcCCCCCE----EEEEeCCCEEEEEECCCCcEeEE
Confidence            99997 56888999999999999999999998887765 69999999998642    58899999999999999987754


Q ss_pred             eeccCcCeeEEEEee-CCCEEeC
Q 024868          240 KRLLRKPASVLSISL-DGKYLAM  261 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~-dg~~la~  261 (261)
                       ..|...|.+++|+| |+++||+
T Consensus       308 -~~H~~~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          308 -LSHRDFVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             -CCCSSCEEEEEECSSSTTEEEE
T ss_pred             -CCCCCCEEEEEEeCCCCCEEEE
Confidence             47889999999998 7888874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.1e-39  Score=253.86  Aligned_cols=232  Identities=11%  Similarity=0.110  Sum_probs=182.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .++|+|++|+|+   ..++++|+.++        .|..||..+...    .....+.+|...|.+++|+|++++|++++.
T Consensus        11 ~~~v~~~~~s~~---g~~l~~~~~d~--------~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~   75 (377)
T 3dwl_C           11 PKPSYEHAFNSQ---RTEFVTTTATN--------QVELYEQDGNGW----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQ   75 (377)
T ss_dssp             SSCCSCCEECSS---SSEEECCCSSS--------CBCEEEEETTEE----EECCCBCCCSSCEEEEEECTTTCCEEEEET
T ss_pred             CCcEEEEEECCC---CCEEEEecCCC--------EEEEEEccCCce----EEEEEEecCCceEEEEEEeCCCCEEEEEeC
Confidence            578999999995   56899998888        566666655421    124567889999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE---Eeeccc-cCCceeE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPK-AHKSVLD  159 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~-~~~~v~~  159 (261)
                      |+.|++||+.++.....    ......|...|.+++|+|++++|++++.|+.|++||+++++.   ...+.. |...|.+
T Consensus        76 d~~v~vwd~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~  151 (377)
T 3dwl_C           76 DRNAYVYEKRPDGTWKQ----TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS  151 (377)
T ss_dssp             TSSEEEC------CCCC----EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred             CCeEEEEEcCCCCceee----eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence            99999999988651111    122334678999999999999999999999999999988763   445555 6779999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEcc------------------CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTE------------------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                      ++|+|++++|++++.|+.|++||++                  .++++..+ .| ...|.+++|+|++++     +++++
T Consensus       152 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~sp~~~~-----l~~~~  224 (377)
T 3dwl_C          152 LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS-GGWVHAVGFSPSGNA-----LAYAG  224 (377)
T ss_dssp             EEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC-SSSEEEEEECTTSSC-----EEEEE
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC-CceEEEEEECCCCCE-----EEEEe
Confidence            9999999999999999999999985                  24455555 44 446999999999998     68899


Q ss_pred             CCcEEEEEECCCCeE----EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          222 DKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       222 ~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .|+.|++||+++++.    +..+..|...+.+++|+|||++|++
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  268 (377)
T 3dwl_C          225 HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA  268 (377)
T ss_dssp             TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEE
T ss_pred             CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEE
Confidence            999999999999876    6778888899999999999999873

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.6e-37  Score=241.63  Aligned_cols=240  Identities=15%  Similarity=0.153  Sum_probs=179.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCC-CCCCCCceEEEEEcCCCCceec-------------------------------
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSR-ASSSPSVLEIFSFDPKTTSVYT-------------------------------   51 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~~-------------------------------   51 (261)
                      ++||+|++|+|+   ..++++||++. ..|.+|.+++|.++........                               
T Consensus        14 g~PV~sv~fs~d---g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~   90 (365)
T 4h5i_A           14 GYPAYGAKFLNN---DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGC   90 (365)
T ss_dssp             SSCEEEEEEEET---TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEEC
T ss_pred             CCCEEEEEEeCC---CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEE
Confidence            679999999996   56778776543 4578888899887654321100                               


Q ss_pred             -------------CCeEEeee------------------cCCCCCceEEEECCCCCeEEEE--ecCCcEEEEEEeCCccc
Q 024868           52 -------------SPLVTYVF------------------DESEGDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATD   98 (261)
Q Consensus        52 -------------~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~~~~~~~~~   98 (261)
                                   .......+                  ..+...+.+++|+|||++++++  +.|++|++||+.+... 
T Consensus        91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-  169 (365)
T 4h5i_A           91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-  169 (365)
T ss_dssp             CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-
T ss_pred             CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-
Confidence                         00000000                  1122346789999999998754  4689999999988765 


Q ss_pred             cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-c-cccCCceeEEEEcCCCCEEEEecCCC
Q 024868           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-E-PKAHKSVLDMDFSLDSEFLATTSTDG  176 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~d~  176 (261)
                             ...+.+...|.+++|+|||+++++++.+ .+.+|+..+++.... . ..+...+.+++|+|+++++++++.|+
T Consensus       170 -------~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~  241 (365)
T 4h5i_A          170 -------KFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK  241 (365)
T ss_dssp             -------EEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred             -------EEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence                   2223456789999999999999999755 566777777665433 2 33445799999999999999998876


Q ss_pred             ----cEEEEEccCCcE----EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee-eccCcCe
Q 024868          177 ----SARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPA  247 (261)
Q Consensus       177 ----~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v  247 (261)
                          .+++||+.....    ...+..+.. +|++++|+|||++     +++++.|++|+|||+++++++..+ ..|...|
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~-----lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V  315 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGEL-----AVLASNDNSIALVKLKDLSMSKIFKQAHSFAI  315 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCE-----EEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred             cceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCc-----eEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence                588899887654    233444544 6999999999998     799999999999999999988764 6799999


Q ss_pred             eEEEEeeCCCEEeC
Q 024868          248 SVLSISLDGKYLAM  261 (261)
Q Consensus       248 ~~~~~s~dg~~la~  261 (261)
                      ++++|||||++||+
T Consensus       316 ~~v~fSpdg~~laS  329 (365)
T 4h5i_A          316 TEVTISPDSTYVAS  329 (365)
T ss_dssp             EEEEECTTSCEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            99999999999984

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.5e-37  Score=239.65  Aligned_cols=232  Identities=11%  Similarity=0.087  Sum_probs=184.2

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ++|++++|+|+   ..++++|+.|+        .|..||..+....   .......+|...|.+++|+|++++|++++.|
T Consensus        17 ~~v~~l~~sp~---g~~las~~~D~--------~i~iw~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A           17 SRCWFLAWNPA---GTLLASCGGDR--------RIRIWGTEGDSWI---CKSVLSEGHQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             SCEEEEEECTT---SSCEEEEETTS--------CEEEEEEETTEEE---EEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEEECCC---CCEEEEEcCCC--------eEEEEEcCCCcce---eeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence            48999999996   56899999999        6777776554421   1122346899999999999999999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce---EEeeccccCCceeEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKSVLDMD  161 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~v~~~~  161 (261)
                      +++++|++.......     ......|...|.+++|+|++++|++++.|++|++||++++.   .+..+..|...|.+++
T Consensus        83 ~~v~iw~~~~~~~~~-----~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (345)
T 3fm0_A           83 ATTCIWKKNQDDFEC-----VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV  157 (345)
T ss_dssp             SCEEEEEECCC-EEE-----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred             CcEEEEEccCCCeEE-----EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence            999999997654211     11123466899999999999999999999999999998653   3344556777899999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC-----
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-----  234 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~-----  234 (261)
                      |+|++++|++++.|+.|++||.++++.  ...+..|.. .|.+++|+|+|++     +++++.|++|++||....     
T Consensus       158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~sp~g~~-----l~s~s~D~~v~iW~~~~~~~~~~  231 (345)
T 3fm0_A          158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQR-----LASCSDDRTVRIWRQYLPGNEQG  231 (345)
T ss_dssp             ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSCEEEEEEECTTCTTC
T ss_pred             ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEEEEECCCCCE-----EEEEeCCCeEEEeccccCCCCcc
Confidence            999999999999999999999988753  456666655 6999999999998     789999999999996321     


Q ss_pred             ----------eEEeeeec-cCcCeeEEEEeeCCCEEeC
Q 024868          235 ----------NKIGHKRL-LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       235 ----------~~~~~~~~-~~~~v~~~~~s~dg~~la~  261 (261)
                                +.+..+.. |...|.+++|+|++..||+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s  269 (345)
T 3fm0_A          232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALAT  269 (345)
T ss_dssp             CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEE
T ss_pred             ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEE
Confidence                      22223333 6778999999999988763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-37  Score=246.02  Aligned_cols=236  Identities=16%  Similarity=0.228  Sum_probs=193.7

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|++++|+|+   ..++++|+.|+        .|..||..+...      ...+..|...|.+++|+|++++|++++
T Consensus        65 H~~~V~~~~~sp~---~~~l~s~s~D~--------~v~iWd~~~~~~------~~~~~~h~~~v~~~~~s~~g~~las~~  127 (380)
T 3iz6_a           65 HSGKVYSLDWTPE---KNWIVSASQDG--------RLIVWNALTSQK------THAIKLHCPWVMECAFAPNGQSVACGG  127 (380)
T ss_dssp             CSSCEEEEEECTT---SSCEEEEETTS--------EEEEEETTTTEE------EEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred             cccEEEEEEEcCC---CCEEEEEeCCC--------eEEEEECCCCcc------ceEEecCCCCEEEEEECCCCCEEEEee
Confidence            3679999999995   56899999999        999999877664      567888999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCceEEeec-----cccCCc
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE-----PKAHKS  156 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~  156 (261)
                      .|+.+++|++..................|.+.+.++.|+|+ +..|++++.|++|++||+.+++.+..+     ..|...
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred             CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence            99999999997643211111111222345678999999996 457999999999999999998876544     345668


Q ss_pred             eeEEEEcC-CCCEEEEecCCCcEEEEEcc-CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          157 VLDMDFSL-DSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       157 v~~~~~s~-~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      |.+++|+| ++++|++++.|+.|++||++ .++.+..+..|.. .|.+++|+|++++     +++++.|++|++||++++
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~-----l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQR-----FGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSE-----EEEECSSSCEEEEETTTT
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCe-----EEEEcCCCeEEEEECCCC
Confidence            99999987 88999999999999999998 4577777877765 6999999999998     799999999999999999


Q ss_pred             eEEeeeeccC-------cCeeEEEEeeCCCEEeC
Q 024868          235 NKIGHKRLLR-------KPASVLSISLDGKYLAM  261 (261)
Q Consensus       235 ~~~~~~~~~~-------~~v~~~~~s~dg~~la~  261 (261)
                      +.+..+..+.       ..+.+++|+|+|++|++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  315 (380)
T 3iz6_a          282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA  315 (380)
T ss_dssp             EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred             cEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence            8876655432       24889999999999873

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.3e-36  Score=234.06  Aligned_cols=225  Identities=14%  Similarity=0.150  Sum_probs=190.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.+++|+|+   ..++++|+.|+        .|..||..+++.      ...+.+|...|.+++|+|++++|++++.
T Consensus        65 ~~~v~~~~~s~d---g~~l~s~s~D~--------~v~~wd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~s~  127 (319)
T 3frx_A           65 SHIVQDCTLTAD---GAYALSASWDK--------TLRLWDVATGET------YQRFVGHKSDVMSVDIDKKASMIISGSR  127 (319)
T ss_dssp             SSCEEEEEECTT---SSEEEEEETTS--------EEEEEETTTTEE------EEEEECCSSCEEEEEECTTSCEEEEEET
T ss_pred             cccEEEEEECCC---CCEEEEEeCCC--------EEEEEECCCCCe------eEEEccCCCcEEEEEEcCCCCEEEEEeC
Confidence            568999999985   56899999999        999999988765      5678899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC------CcEEEEeccCCeEEEEEccCceEEeeccccCCce
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD------GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  157 (261)
                      |++|++||+.....        .....|...+.+++|+|.      +..+++++.|+.|++||+++.+....+..|...|
T Consensus       128 D~~i~vwd~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v  199 (319)
T 3frx_A          128 DKTIKVWTIKGQCL--------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI  199 (319)
T ss_dssp             TSCEEEEETTSCEE--------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCE
T ss_pred             CCeEEEEECCCCeE--------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcE
Confidence            99999999965432        222346678999999985      4489999999999999999988887888888899


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                      .+++|+|++++|++++.|+.|++||+.+++++..+..+  ..+.+++|+|++.+     ++++.. +.+++|++..+..+
T Consensus       200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~-----la~~~~-~~i~v~~~~~~~~~  271 (319)
T 3frx_A          200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYW-----LAAATA-TGIKVFSLDPQYLV  271 (319)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSE-----EEEEET-TEEEEEEETTEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCE-----EEEEcC-CCcEEEEeCcCeee
Confidence            99999999999999999999999999999998888754  35999999999987     455544 45999999887665


Q ss_pred             eeee--------ccCcCeeEEEEeeCCCEEeC
Q 024868          238 GHKR--------LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       238 ~~~~--------~~~~~v~~~~~s~dg~~la~  261 (261)
                      ..+.        .+...+.+++|+|||++|++
T Consensus       272 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  303 (319)
T 3frx_A          272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA  303 (319)
T ss_dssp             EEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred             eccCccccccccCcCcceeEEEECCCCCEEEE
Confidence            4443        23457889999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.3e-37  Score=234.29  Aligned_cols=233  Identities=12%  Similarity=0.095  Sum_probs=183.1

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~   80 (261)
                      ...+|++++|+|+   ..++++|+.|+        .|..||..+...    .....+.+|.+.|.+++|+|+  +++|++
T Consensus         8 h~~~V~~~~~s~~---g~~las~s~D~--------~v~iw~~~~~~~----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s   72 (297)
T 2pm7_B            8 HNEMIHDAVMDYY---GKRMATCSSDK--------TIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILAS   72 (297)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEETTS--------CEEEEEBCSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CcCceEEEEECCC---CCEEEEEeCCC--------EEEEEecCCCCc----EEEEEEccccCCeEEEEecCCCcCCEEEE
Confidence            3678999999985   56899999999        677777653211    113468899999999999864  899999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceE--EeeccccCCc
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKS  156 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~  156 (261)
                      ++.|++|++||+.++.....     .....|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..|...
T Consensus        73 ~s~D~~v~iWd~~~~~~~~~-----~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~  147 (297)
T 2pm7_B           73 CSYDGKVMIWKEENGRWSQI-----AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (297)
T ss_dssp             EETTTEEEEEEBSSSCBCCC-----EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred             EcCCCEEEEEEcCCCceEEE-----EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCc
Confidence            99999999999987642110     111235678999999997  88999999999999999987532  2344566778


Q ss_pred             eeEEEEcCC-------------CCEEEEecCCCcEEEEEccCCc----EEEEEeecCCCceEEEEEecCC---CcceEEE
Q 024868          157 VLDMDFSLD-------------SEFLATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDG---TKPFLFC  216 (261)
Q Consensus       157 v~~~~~s~~-------------~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~~---~~~~~~~  216 (261)
                      |.+++|+|+             +++|++++.|+.|++||+++++    ....+..|.. .|.+++|+|++   ++     
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~-----  221 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSY-----  221 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEE-----
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceE-----
Confidence            999999997             5799999999999999998876    5556666655 69999999996   44     


Q ss_pred             EEeeCCCcEEEEEECCCCe---EEeee--eccCcCeeEEEEeeCCCEEeC
Q 024868          217 TVQRGDKALLAVYDISTWN---KIGHK--RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       217 ~~~~~~d~~i~~~d~~~~~---~~~~~--~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +++++.|++|++||+++..   ....+  ..+...+.+++|+|+|++||+
T Consensus       222 las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las  271 (297)
T 2pm7_B          222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  271 (297)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred             EEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEE
Confidence            6899999999999998643   11122  356788999999999999874

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.9e-37  Score=238.99  Aligned_cols=242  Identities=10%  Similarity=0.074  Sum_probs=183.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ...|.+++|+|+   +.++++++ ++.....+ ..++.|+....... ... ......|...|.+++|+|++ .|++++.
T Consensus        30 ~~~v~~~~fs~d---G~~l~~~s-d~~~r~Wd-~~~~~~~~~~~~~~-~~~-~~~~~~~~~~v~~~~~s~d~-~l~~~s~  101 (344)
T 4gqb_B           30 ERQLEAARYRSD---GALLLGAS-SLSGRCWA-GSLWLFKDPCAAPN-EGF-CSAGVQTEAGVADLTWVGER-GILVASD  101 (344)
T ss_dssp             CSEEEEEEECTT---SCEEEEEE-CCSSSCCC-EEEEEESSGGGTTC-GGG-CSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred             cCCEEEEEECCC---CCEEEEEe-CCceEEee-ceeeeeccccccCC-cce-eeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence            357999999996   45676665 43222221 14455543221110 000 11222356789999999985 6889999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      ||+|++||+.+++......   .....|.+.|.+++|+|+|++|++++.|++|++||+++++.+..+..|...|.+++|+
T Consensus       102 dg~v~lWd~~~~~~~~~~~---~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~  178 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSK---FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS  178 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEE---EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEEeccCCCceeEee---ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence            9999999999876532211   1223567899999999999999999999999999999999988888888999999999


Q ss_pred             CCCC-EEEEecCCCcEEEEEccCCcEEEEEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          164 LDSE-FLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       164 ~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      |++. +|++++.|+.|++||++++++...+..+ +...+.+++|+|++..+    +++++.|+.|++||+++++.+..+.
T Consensus       179 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----l~sg~~dg~v~~wd~~~~~~~~~~~  254 (344)
T 4gqb_B          179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSLVDTKSTSCVLSSA  254 (344)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE----EEEEETTSEEEEEESCC--CCEEEE
T ss_pred             CCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc----eEEeccCCcEEEEECCCCcEEEEEc
Confidence            9885 7899999999999999999988877532 23358999999977652    5788999999999999999998899


Q ss_pred             ccCcCeeEEEEeeCC-CEEe
Q 024868          242 LLRKPASVLSISLDG-KYLA  260 (261)
Q Consensus       242 ~~~~~v~~~~~s~dg-~~la  260 (261)
                      .|...|.+++|+|+| ++||
T Consensus       255 ~h~~~v~~v~fsp~g~~~la  274 (344)
T 4gqb_B          255 VHSQCVTGLVFSPHSVPFLA  274 (344)
T ss_dssp             CCSSCEEEEEECSSSSCCEE
T ss_pred             CCCCCEEEEEEccCCCeEEE
Confidence            999999999999998 4665

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.9e-36  Score=253.73  Aligned_cols=236  Identities=15%  Similarity=0.242  Sum_probs=187.6

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.+++|+|+.  ...+++|+.|+        .+..||....++      ...+.+|...|.+++|+|++++|++++.
T Consensus       147 ~~~v~~v~f~p~~--~~~l~s~s~D~--------~v~lwd~~~~~~------~~~l~~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          147 ARAMNSVDFKPSR--PFRIISGSDDN--------TVAIFEGPPFKF------KSTFGEHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             SSCEEEEEECSSS--SCEEEEEETTS--------CEEEEETTTBEE------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCceEEEECCCC--CeEEEEEeCCC--------eEEEEECCCCeE------eeeeccccCceEEEEECCCCCEEEEEEC
Confidence            5689999999863  45799999999        788888766554      5578899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee--------------
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--------------  149 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--------------  149 (261)
                      |++|++||+.++.....+.........|.+.|.+++|+|++++|++++.|++|++||+++++....              
T Consensus       211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~  290 (611)
T 1nr0_A          211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI  290 (611)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred             CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence            999999999877642221111112225778999999999999999999999999999987654322              


Q ss_pred             -----------------------------ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee------
Q 024868          150 -----------------------------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR------  194 (261)
Q Consensus       150 -----------------------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------  194 (261)
                                                   ...|...|.+++|+|+|++|++++.|+.|++||+.+++....+..      
T Consensus       291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v  370 (611)
T 1nr0_A          291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI  370 (611)
T ss_dssp             EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred             EEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence                                         234666899999999999999999999999999987654332100      


Q ss_pred             ---------------------------------------------------------------------------cCCCc
Q 024868          195 ---------------------------------------------------------------------------NSDEK  199 (261)
Q Consensus       195 ---------------------------------------------------------------------------~~~~~  199 (261)
                                                                                                 .+...
T Consensus       371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~  450 (611)
T 1nr0_A          371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN  450 (611)
T ss_dssp             EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred             EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence                                                                                       00123


Q ss_pred             eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE--EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +.+++|+|||++     +++++.|++|++||+.+++.  +.. ..|...|.+++|+|||++||+
T Consensus       451 v~~va~spdg~~-----lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las  508 (611)
T 1nr0_A          451 SSCVALSNDKQF-----VAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVA  508 (611)
T ss_dssp             EEEEEECTTSCE-----EEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEE
T ss_pred             ceEEEEeCCCCE-----EEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEE
Confidence            678899999998     78999999999999987653  233 578899999999999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-36  Score=234.37  Aligned_cols=232  Identities=14%  Similarity=0.105  Sum_probs=175.3

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee-cC-CCCCceEEEECCCCCeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DE-SEGDPMTIAVNPSGDDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~   80 (261)
                      ..++|++++|+|+     ++++|+.|+        .|..||......    .....+ .. |...|.+++|+|++++|++
T Consensus        13 h~~~v~~~~~s~~-----~las~~~D~--------~i~lw~~~~~~~----~~~~~~~~~~h~~~v~~v~~sp~~~~las   75 (330)
T 2hes_X           13 YKEKIWSFDFSQG-----ILATGSTDR--------KIKLVSVKYDDF----TLIDVLDETAHKKAIRSVAWRPHTSLLAA   75 (330)
T ss_dssp             CSSCEEEEEEETT-----EEEEEESSS--------CEEEEECSSSCC----EEEEEECTTCCCSCEEEEEECTTSSEEEE
T ss_pred             CCCceeeeccCCC-----EEEEEcCCC--------EEEEEEecCCCe----EEEEEEecCCccCCEEEEEECCCCCEEEE
Confidence            3578999999873     899999999        777777765421    112233 34 9999999999999999999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc----eEEeeccccCCc
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILDEPKAHKS  156 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~  156 (261)
                      ++.|++|++|++..................|...|.+++|+|++++|++++.|++|++||++..    +.+..+..|...
T Consensus        76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence            9999999999986432100000001112346789999999999999999999999999999532    344556677789


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEEccCC--cEEEEEeecCCCceEEEEEecC--CCcceEEEEEeeCCCcEEEEEECC
Q 024868          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD--GTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~--~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      |.+++|+|++++|++++.|+.|++||..++  +++..+..|.. .|.+++|+|+  +..     +++++.|++|++||++
T Consensus       156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~-----l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFDKTEGVFR-----LCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCSSSSCE-----EEEEETTSCEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEEEEecCCCCeeE-----EEEEeCCCeEEEEEec
Confidence            999999999999999999999999999876  56777777765 6999999999  444     6889999999999987


Q ss_pred             CC--------eEEeeeec-cCcCeeEEEEeeCCC
Q 024868          233 TW--------NKIGHKRL-LRKPASVLSISLDGK  257 (261)
Q Consensus       233 ~~--------~~~~~~~~-~~~~v~~~~~s~dg~  257 (261)
                      ++        .....+.. |...|.+++|++++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~  263 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL  263 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSCEEEEEECTTSC
T ss_pred             CCCccccceeEEeeecccccccceEEEEEcCCCE
Confidence            54        23333333 778999999997764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.4e-36  Score=253.09  Aligned_cols=230  Identities=17%  Similarity=0.208  Sum_probs=190.5

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|++++|+|+   ..++|+|+.++        .|..||..+...    .....+.+|.+.|.+++|+|++++|++++
T Consensus        58 h~~~v~~~~~spd---g~~lasg~~d~--------~v~lWd~~~~~~----~~~~~~~~~~~~v~~v~fs~dg~~l~~~~  122 (611)
T 1nr0_A           58 HSHQTTVAKTSPS---GYYCASGDVHG--------NVRIWDTTQTTH----ILKTTIPVFSGPVKDISWDSESKRIAAVG  122 (611)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEETTS--------EEEEEESSSTTC----CEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             CCCceEEEEECCC---CcEEEEEeCCC--------CEEEeECCCCcc----eeeEeecccCCceEEEEECCCCCEEEEEE
Confidence            3578999999996   67999999999        888888754321    22456788999999999999999999887


Q ss_pred             cC----CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEeeccccCCce
Q 024868           83 TN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (261)
Q Consensus        83 ~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  157 (261)
                      .+    +.|++||.  +...       .....|...|.+++|+|++. .|++++.|++|++||..+++....+..|...|
T Consensus       123 ~~~~~~~~v~~wd~--~~~~-------~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V  193 (611)
T 1nr0_A          123 EGRERFGHVFLFDT--GTSN-------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV  193 (611)
T ss_dssp             CCSSCSEEEEETTT--CCBC-------BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred             CCCCceeEEEEeeC--CCCc-------ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCce
Confidence            65    46888874  3221       12234678999999999987 59999999999999999888877788888899


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee------cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      .+++|+|+|++|++++.|+.|++||+.+++++..+..      .+...|.+++|+|+|++     +++++.|++|++||+
T Consensus       194 ~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-----l~s~s~D~~v~lWd~  268 (611)
T 1nr0_A          194 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-----IASASADKTIKIWNV  268 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-----EEEEETTSEEEEEET
T ss_pred             EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE-----EEEEeCCCeEEEEeC
Confidence            9999999999999999999999999999999888742      23447999999999998     789999999999999


Q ss_pred             CCCeEEeee-------------------------------------------eccCcCeeEEEEeeCCCEEeC
Q 024868          232 STWNKIGHK-------------------------------------------RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       232 ~~~~~~~~~-------------------------------------------~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ++++.+..+                                           ..|...|.+++|+|||++|++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s  341 (611)
T 1nr0_A          269 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS  341 (611)
T ss_dssp             TTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEE
Confidence            987654332                                           356778999999999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.2e-36  Score=235.07  Aligned_cols=233  Identities=12%  Similarity=0.091  Sum_probs=184.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.+++|+|+   ..++++|+.|+        .+..|+......    .....+.+|...|.+++|+|++++|++++.
T Consensus        61 ~~~v~~~~~sp~---g~~l~s~s~D~--------~v~iw~~~~~~~----~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~  125 (345)
T 3fm0_A           61 QRTVRKVAWSPC---GNYLASASFDA--------TTCIWKKNQDDF----ECVTTLEGHENEVKSVAWAPSGNLLATCSR  125 (345)
T ss_dssp             SSCEEEEEECTT---SSEEEEEETTS--------CEEEEEECCC-E----EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEECCC---CCEEEEEECCC--------cEEEEEccCCCe----EEEEEccCCCCCceEEEEeCCCCEEEEEEC
Confidence            578999999995   56899999998        666666554432    224568899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--EeeccccCCceeEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMD  161 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~  161 (261)
                      |++|++||+.........    .....|...|.+++|+|++++|++++.|+.|++||.++++.  ...+..|...|.+++
T Consensus       126 D~~v~iwd~~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~  201 (345)
T 3fm0_A          126 DKSVWVWEVDEEDEYECV----SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA  201 (345)
T ss_dssp             TSCEEEEEECTTSCEEEE----EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred             CCeEEEEECCCCCCeEEE----EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE
Confidence            999999999876431111    11224567899999999999999999999999999987753  345667778999999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCC---------------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDG---------------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i  226 (261)
                      |+|+|++|++++.|+.|++||....               +++..+...+...|.+++|+|++..     +++++.|+.|
T Consensus       202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-----l~s~~~d~~i  276 (345)
T 3fm0_A          202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-----LATACGDDAI  276 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-----EEEEETTSCE
T ss_pred             ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-----EEEEeCCCeE
Confidence            9999999999999999999997432               2344455544557999999999998     6889999999


Q ss_pred             EEEECCCCeE---------EeeeeccCcCeeEEEEeeCCC-EEe
Q 024868          227 AVYDISTWNK---------IGHKRLLRKPASVLSISLDGK-YLA  260 (261)
Q Consensus       227 ~~~d~~~~~~---------~~~~~~~~~~v~~~~~s~dg~-~la  260 (261)
                      ++|+...+..         ......|...|.+++|+|++. +||
T Consensus       277 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la  320 (345)
T 3fm0_A          277 RVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA  320 (345)
T ss_dssp             EEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEE
T ss_pred             EEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEE
Confidence            9999875421         112246788999999999984 776

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.2e-36  Score=236.93  Aligned_cols=233  Identities=14%  Similarity=0.209  Sum_probs=196.5

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|++++|+|+   ..++++|+.++        .+..||..+..+    .....+.+|...|.+++|+|++++|++++
T Consensus         7 ~~~~i~~~~~s~~---~~~l~~~~~d~--------~v~i~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   71 (372)
T 1k8k_C            7 LVEPISCHAWNKD---RTQIAICPNNH--------EVHIYEKSGNKW----VQVHELKEHNGQVTGVDWAPDSNRIVTCG   71 (372)
T ss_dssp             CSSCCCEEEECTT---SSEEEEECSSS--------EEEEEEEETTEE----EEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             cCCCeEEEEECCC---CCEEEEEeCCC--------EEEEEeCCCCcE----EeeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence            4679999999985   56889998888        888888776642    12556788999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE---Eee-ccccCCcee
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILD-EPKAHKSVL  158 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~-~~~~~~~v~  158 (261)
                      .||.|++||+.+++....     .....+...+.+++|+|++++|++++.|+.|++||++.++.   ... ...|...|.
T Consensus        72 ~dg~i~vwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~  146 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPT-----LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  146 (372)
T ss_dssp             TTSCEEEEEEETTEEEEE-----EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             CCCeEEEEECCCCeeeee-----EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence            999999999987753111     22234567899999999999999999999999999987652   222 244567899


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEc------------------cCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEee
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKT------------------EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                      +++|+|++++|++++.|+.|++||+                  ..++++..+..+.. .+.+++|+|++++     ++++
T Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-----l~~~  220 (372)
T 1k8k_C          147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSR-----VAWV  220 (372)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSE-----EEEE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCE-----EEEE
Confidence            9999999999999999999999995                  36788888876655 6999999999997     6888


Q ss_pred             CCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +.|+.|++||+++++.+..+..+..++.+++|+|++++|++
T Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  261 (372)
T 1k8k_C          221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA  261 (372)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred             eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence            99999999999999998888889899999999999998863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-36  Score=233.52  Aligned_cols=239  Identities=13%  Similarity=0.133  Sum_probs=176.5

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      ...+|++++|+|+   ..++++|+.|+        .|..||....... ........+.+|...|.+++|+|++++|+++
T Consensus        57 h~~~v~~v~~sp~---~~~las~s~D~--------~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~  125 (330)
T 2hes_X           57 HKKAIRSVAWRPH---TSLLAAGSFDS--------TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC  125 (330)
T ss_dssp             CCSCEEEEEECTT---SSEEEEEETTS--------CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE
T ss_pred             ccCCEEEEEECCC---CCEEEEEeCCC--------cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence            3568999999996   56899999999        6777776432110 1122345688999999999999999999999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc--eEEeeccccCCceeE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLD  159 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~  159 (261)
                      +.|++|++||+..........   .....|...|.+++|+|++++|++++.|++|++||..++  +.+..+..|...|.+
T Consensus       126 s~D~~v~iwd~~~~~~~~~~~---~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~  202 (330)
T 2hes_X          126 SRDKSVWIWETDESGEEYECI---SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS  202 (330)
T ss_dssp             ETTSCEEEEECCTTCCCCEEE---EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             eCCCEEEEEeccCCCCCeEEE---EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence            999999999995432111111   112245678999999999999999999999999998766  455666778889999


Q ss_pred             EEEcCC--CCEEEEecCCCcEEEEEccCC--------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868          160 MDFSLD--SEFLATTSTDGSARIWKTEDG--------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (261)
Q Consensus       160 ~~~s~~--~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~  229 (261)
                      ++|+|+  +.+|++++.|+.|++||++++        .+...+...+...|.+++|++++ .     +++++.||.|++|
T Consensus       203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~-----l~s~~~dg~v~iw  276 (330)
T 2hes_X          203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L-----IASVGADGVLAVY  276 (330)
T ss_dssp             EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-C-----EEEEETTSCEEEE
T ss_pred             EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-E-----EEEEeCCCEEEEE
Confidence            999998  678999999999999999754        33444444344579999999776 4     5889999999999


Q ss_pred             ECCCCe--EEee-eeccCc-CeeEEEEee--CCCEEeC
Q 024868          230 DISTWN--KIGH-KRLLRK-PASVLSISL--DGKYLAM  261 (261)
Q Consensus       230 d~~~~~--~~~~-~~~~~~-~v~~~~~s~--dg~~la~  261 (261)
                      |..+++  .... ...|.. .+.+++|+|  ++++||+
T Consensus       277 ~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las  314 (330)
T 2hes_X          277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT  314 (330)
T ss_dssp             EEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred             EcCCCceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence            998774  2322 245665 899999999  7888863

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.5e-37  Score=240.60  Aligned_cols=242  Identities=13%  Similarity=0.137  Sum_probs=184.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ...|++++|+|+   ..++++|+.+.. ...+ ..++.|+..+......  ......+|...|.+++|+|++. +++++.
T Consensus        42 ~~~V~~v~fSpD---G~~las~s~d~~-~~wd-~~v~~~~~~~~~~~~~--~~~~~~~~~~~V~~~~~s~d~~-~l~~s~  113 (357)
T 4g56_B           42 EVQIGAVRYRRD---GALLLAASSLSS-RTWG-GSIWVFKDPEGAPNES--LCTAGVQTEAGVTDVAWVSEKG-ILVASD  113 (357)
T ss_dssp             CSEEEEEEECSS---SCEEEEEECSSS-SSCC-EEEEEESSCC---CGG--GCSEEEECSSCEEEEEEETTTE-EEEEET
T ss_pred             cCCEEEEEECCC---CCEEEEEcCCCC-cccc-CeEEEEECCCCCccee--EecccCCCCCCEEEEEEcCCCC-EEEEEC
Confidence            567999999996   568888876321 1101 1788888765542111  1223456888999999999986 556778


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      ||+|++||+.+++......   .....|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+
T Consensus       114 dg~v~lWd~~~~~~~~~~~---~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNK---FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC  190 (357)
T ss_dssp             TSCEEEC--------CCCC---EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEeeccccceeEEEe---eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            9999999998775422111   1223467899999999999999999999999999999999888888888899999999


Q ss_pred             CCCC-EEEEecCCCcEEEEEccCCcEEEEEee-cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          164 LDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       164 ~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      |++. ++++++.|+.|++||++++++...+.. .....+.+++|+|++..+    +++++.|+.|++||+++++.+..+.
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~----la~g~~d~~i~~wd~~~~~~~~~~~  266 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVSLVNIKNPDSAQTSA  266 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE----EEEEESSSCEEEEESSCGGGCEEEC
T ss_pred             cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce----EEEeecccceeEEECCCCcEeEEEe
Confidence            9875 789999999999999999887765543 233469999999987652    5788899999999999999888888


Q ss_pred             ccCcCeeEEEEeeCC-CEEe
Q 024868          242 LLRKPASVLSISLDG-KYLA  260 (261)
Q Consensus       242 ~~~~~v~~~~~s~dg-~~la  260 (261)
                      .+...|.+++|+|++ ++||
T Consensus       267 ~~~~~v~~l~~sp~~~~~la  286 (357)
T 4g56_B          267 VHSQNITGLAYSYHSSPFLA  286 (357)
T ss_dssp             CCSSCEEEEEECSSSSCCEE
T ss_pred             ccceeEEEEEEcCCCCCEEE
Confidence            999999999999997 4665

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-35  Score=231.83  Aligned_cols=234  Identities=11%  Similarity=0.116  Sum_probs=182.8

Q ss_pred             CceeeEEEEEeeC---CcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCCCCeEE
Q 024868            4 GGTVTCGSWIKRP---ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (261)
Q Consensus         4 ~~~v~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (261)
                      ..+|++++|.+.+   .+..++++|+.|+        .|..||....... ........+.+|...|.+++|+|++.+++
T Consensus        21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~--------~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           21 SDWVTSIVAGFSQKENEDSPVLISGSRDK--------TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             SSCEEEEEECCCSSTTCCCCEEEEEETTS--------CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             hhhhhheeeEEEeecCCCCCEEEEEcCCC--------EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            5789999993221   1367899999999        6666665443211 01223456889999999999999999999


Q ss_pred             EEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc---ccCCc
Q 024868           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP---KAHKS  156 (261)
Q Consensus        80 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~  156 (261)
                      +++.|++|++||+.++.....       ...|...|.+++|+|++++|++++.|++|++||+..... ....   .|...
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~-------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~  164 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKR-------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSAEKENHSDW  164 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEE-------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EECCTTTSCSSC
T ss_pred             EEcCCCcEEEEECCCCcEEEE-------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eeeecccCCCce
Confidence            999999999999988764211       224678999999999999999999999999999974433 2222   45568


Q ss_pred             eeEEEEcCCC----------CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868          157 VLDMDFSLDS----------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       157 v~~~~~s~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i  226 (261)
                      |.+++|+|++          .++++++.|+.|++|| .+++....+..|.. .|.+++|+|+|++     +++++.|+.|
T Consensus       165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~-----l~sgs~dg~v  237 (343)
T 2xzm_R          165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKY-----IATGGKDKKL  237 (343)
T ss_dssp             EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSE-----EEEEETTCEE
T ss_pred             eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCE-----EEEEcCCCeE
Confidence            9999999987          7899999999999999 45666677776655 6999999999998     7899999999


Q ss_pred             EEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ++||+...........+...+.+++|+|++++|+
T Consensus       238 ~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la  271 (343)
T 2xzm_R          238 LIWDILNLTYPQREFDAGSTINQIAFNPKLQWVA  271 (343)
T ss_dssp             EEEESSCCSSCSEEEECSSCEEEEEECSSSCEEE
T ss_pred             EEEECCCCcccceeecCCCcEEEEEECCCCCEEE
Confidence            9999954332222233556799999999999886

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.6e-36  Score=232.85  Aligned_cols=227  Identities=15%  Similarity=0.190  Sum_probs=181.6

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.+++|+|+   ..++++|+.|+        .+..||..+...      ...+.+|...|.+++|+|++++|++++.
T Consensus        76 ~~~V~~~~~~~~---~~~l~s~s~D~--------~v~lwd~~~~~~------~~~~~~h~~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           76 NHFVSDLALSQE---NCFAISSSWDK--------TLRLWDLRTGTT------YKRFVGHQSEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             SSCEEEEEECSS---TTEEEEEETTS--------EEEEEETTSSCE------EEEEECCCSCEEEEEECSSTTEEEEEET
T ss_pred             CCceEEEEECCC---CCEEEEEcCCC--------cEEEEECCCCcE------EEEEcCCCCcEEEEEECCCCCEEEEEcC
Confidence            468999999985   56899999999        899999887664      5568899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC----------cEEEEeccCCeEEEEEccCceEEeecccc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG----------SRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      |++|++||+..... .    .......+...+.+++|+|++          .+|++++.|+.|++||. +.+....+..|
T Consensus       139 d~~i~~wd~~~~~~-~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h  212 (343)
T 2xzm_R          139 EREIKLWNILGECK-F----SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH  212 (343)
T ss_dssp             TSCEEEEESSSCEE-E----ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC
T ss_pred             CCEEEEEeccCCce-e----eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc
Confidence            99999999974321 0    111222456789999999987          68999999999999994 45555666778


Q ss_pred             CCceeEEEEcCCCCEEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      ...|.+++|+|+|++|++++.|+.|++||+.+ ..+...+. + ...|.+++|+|++++      ++++.|+.|++||+.
T Consensus       213 ~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~-~~~v~~v~~sp~~~~------la~~~d~~v~iw~~~  284 (343)
T 2xzm_R          213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-A-GSTINQIAFNPKLQW------VAVGTDQGVKIFNLM  284 (343)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-C-SSCEEEEEECSSSCE------EEEEESSCEEEEESS
T ss_pred             cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-C-CCcEEEEEECCCCCE------EEEECCCCEEEEEeC
Confidence            88999999999999999999999999999954 44444443 2 235999999999986      334567789999998


Q ss_pred             CCeEEe--eee-----------ccCcCeeEEEEeeCCCEEeC
Q 024868          233 TWNKIG--HKR-----------LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       233 ~~~~~~--~~~-----------~~~~~v~~~~~s~dg~~la~  261 (261)
                      +++...  .+.           .|...+.+++|+|+|++||+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  326 (343)
T 2xzm_R          285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA  326 (343)
T ss_dssp             SCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred             CCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence            766432  222           45677999999999999874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.4e-36  Score=248.53  Aligned_cols=223  Identities=15%  Similarity=0.210  Sum_probs=191.5

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|++++|+|+   ..++++|+.++        .+..||.....       ...+.+|...|.+++|+|++++|++++.
T Consensus       344 ~~~v~~~~~s~~---g~~l~~~~~dg--------~v~~~~~~~~~-------~~~~~~~~~~v~~~~~s~dg~~l~~~~~  405 (577)
T 2ymu_A          344 SSSVWGVAFSPD---GQTIASASDDK--------TVKLWNRNGQL-------LQTLTGHSSSVRGVAFSPDGQTIASASD  405 (577)
T ss_dssp             SSCEEEEEECTT---SSEEEEEETTS--------EEEEEETTCCE-------EEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCCEEEEEECCC---CCEEEEEeCCC--------EEEEEcCCCCE-------EEEecCCCCCeEEEEECCCCCEEEEEeC
Confidence            568999999986   56889999998        88888864432       4567889999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |+.|++||......        .....|...|.+++|+||+++|++++.|+.|++||. +++.+..+..|...|.+++|+
T Consensus       406 d~~v~~~~~~~~~~--------~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s  476 (577)
T 2ymu_A          406 DKTVKLWNRNGQLL--------QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS  476 (577)
T ss_dssp             TSEEEEECTTCCEE--------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred             CCEEEEEeCCCCEE--------EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEc
Confidence            99999999543211        112245678999999999999999999999999996 556666777788899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  243 (261)
                      |++++|++++.|+.|++||. +++++..+..|.. .|++++|+|+|++     +++++.|+.|++||. +++.+..+..|
T Consensus       477 pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~-~v~~l~~s~dg~~-----l~s~~~dg~v~lwd~-~~~~~~~~~~h  548 (577)
T 2ymu_A          477 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQT-----IASASDDKTVKLWNR-NGQLLQTLTGH  548 (577)
T ss_dssp             TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS-CEEEEEECTTSSC-----EEEEETTSEEEEECT-TSCEEEEEECC
T ss_pred             CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC-CEEEEEEcCCCCE-----EEEEECcCEEEEEeC-CCCEEEEEcCC
Confidence            99999999999999999995 6888888887765 6999999999998     689999999999996 57888888999


Q ss_pred             CcCeeEEEEeeCCCEEeC
Q 024868          244 RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       244 ~~~v~~~~~s~dg~~la~  261 (261)
                      ...|.+++|+|||++|++
T Consensus       549 ~~~v~~~~fs~dg~~l~s  566 (577)
T 2ymu_A          549 SSSVWGVAFSPDGQTIAS  566 (577)
T ss_dssp             SSCEEEEEECTTSSCEEE
T ss_pred             CCCEEEEEEcCCCCEEEE
Confidence            999999999999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.1e-36  Score=234.05  Aligned_cols=233  Identities=11%  Similarity=0.106  Sum_probs=183.4

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~   80 (261)
                      ...+|++++|+|+   ..++++|+.|+        .+..||..+...    .....+.+|.+.|.+++|+|  ++++|++
T Consensus        12 H~~~V~~v~~s~~---g~~lasgs~D~--------~v~lwd~~~~~~----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s   76 (316)
T 3bg1_A           12 HEDMIHDAQMDYY---GTRLATCSSDR--------SVKIFDVRNGGQ----ILIADLRGHEGPVWQVAWAHPMYGNILAS   76 (316)
T ss_dssp             --CCEEEEEECGG---GCEEEEEETTT--------EEEEEEEETTEE----EEEEEEECCSSCEEEEEECCGGGSSCEEE
T ss_pred             ccCeEEEeeEcCC---CCEEEEEeCCC--------eEEEEEecCCCc----EEEEEEcCCCccEEEEEeCCCCCCCEEEE
Confidence            3578999999985   66899999999        888888765431    12456889999999999986  4899999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceE---EeeccccCC
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHK  155 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~  155 (261)
                      ++.|++|++||+.++.....     .....|...|.+++|+|+  +.+|++++.|+.|++||++.+..   ......|..
T Consensus        77 ~s~D~~v~iWd~~~~~~~~~-----~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~  151 (316)
T 3bg1_A           77 CSYDRKVIIWREENGTWEKS-----HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI  151 (316)
T ss_dssp             EETTSCEEEECCSSSCCCEE-----EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred             EECCCEEEEEECCCCcceEE-----EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence            99999999999987542110     112245678999999997  78999999999999999987532   233445666


Q ss_pred             ceeEEEEcCC-----------------CCEEEEecCCCcEEEEEccCC---cEEEEEeecCCCceEEEEEecCC----Cc
Q 024868          156 SVLDMDFSLD-----------------SEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDG----TK  211 (261)
Q Consensus       156 ~v~~~~~s~~-----------------~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~p~~----~~  211 (261)
                      .+.+++|+|+                 +++|++++.|+.|++||++.+   +++..+..|.. .|++++|+|++    ++
T Consensus       152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCE
T ss_pred             CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCce
Confidence            8999999997                 478999999999999999755   35566666655 69999999987    55


Q ss_pred             ceEEEEEeeCCCcEEEEEECCCC---e-EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          212 PFLFCTVQRGDKALLAVYDISTW---N-KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~~---~-~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                           +++++.|++|++||+++.   + ....+..+...|.+++|+|+|++||+
T Consensus       231 -----las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las  279 (316)
T 3bg1_A          231 -----IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAV  279 (316)
T ss_dssp             -----EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEE
T ss_pred             -----EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEE
Confidence                 689999999999999762   1 12234567889999999999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-35  Score=233.93  Aligned_cols=227  Identities=14%  Similarity=0.202  Sum_probs=179.9

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC------------------CCC
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------------------SEG   64 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------------~~~   64 (261)
                      ..++|+|++|+|+   ..++++|+ ++        .+..|+..++..      ...+..                  +..
T Consensus        63 h~~~V~~v~fspd---g~~la~g~-~~--------~v~i~~~~~g~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~  124 (393)
T 1erj_A           63 HTSVVCCVKFSND---GEYLATGC-NK--------TTQVYRVSDGSL------VARLSDDSAANKDPENLNTSSSPSSDL  124 (393)
T ss_dssp             CSSCCCEEEECTT---SSEEEEEC-BS--------CEEEEETTTCCE------EEEECC-----------------CCCC
T ss_pred             CCCEEEEEEECCC---CCEEEEEc-CC--------cEEEEEecCCCE------EEEecCccccccccccccccccCCCce
Confidence            4578999999996   45778775 44        456666655543      112222                  233


Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  144 (261)
                      .|.+++|+|++++|++++.|+.|++||+.+++...       ....|...|.+++|+|++++|++++.|++|++||++++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~-------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~  197 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  197 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-------EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence            58999999999999999999999999998765411       12245678999999999999999999999999999998


Q ss_pred             eEEeeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEe-------ecCCCceEEEEEecCCCcceEEE
Q 024868          145 RIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT-------RNSDEKIELCRFSKDGTKPFLFC  216 (261)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~~~~~~  216 (261)
                      +....+ .++..+.+++|+| ++++|++++.|+.|++||+++++.+..+.       .| ...|.+++|+|+|++     
T Consensus       198 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g~~-----  270 (393)
T 1erj_A          198 QCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQS-----  270 (393)
T ss_dssp             EEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTSSE-----
T ss_pred             eeEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECCCCCE-----
Confidence            875443 4566899999999 89999999999999999999998877763       33 346999999999998     


Q ss_pred             EEeeCCCcEEEEEECCCCe------------EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          217 TVQRGDKALLAVYDISTWN------------KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       217 ~~~~~~d~~i~~~d~~~~~------------~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +++++.|+.|++||+++..            ....+..|...|.+++|+|++++|++
T Consensus       271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  327 (393)
T 1erj_A          271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS  327 (393)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEE
Confidence            6899999999999997632            33456678889999999999999873

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.7e-36  Score=237.72  Aligned_cols=240  Identities=17%  Similarity=0.170  Sum_probs=190.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-cCCeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~   81 (261)
                      ..+|.+++|+|+   ..++++|+.++        .+..|+....... ........+.+|.+.+.++.|+|+ +..|+++
T Consensus       108 ~~~v~~~~~s~~---g~~las~~~d~--------~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~  176 (380)
T 3iz6_a          108 CPWVMECAFAPN---GQSVACGGLDS--------ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG  176 (380)
T ss_dssp             CTTCCCCEECTT---SSEEEECCSSS--------CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE
T ss_pred             CCCEEEEEECCC---CCEEEEeeCCC--------cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE
Confidence            356888999985   66899999988        5555555432110 011113457899999999999996 4579999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccC-ceEEeeccccCCceeE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLD  159 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~  159 (261)
                      +.|++|++||+.++.......  ......|...|.++.|+| ++++|++|+.|++|++||++. .+.+..+..|...|.+
T Consensus       177 s~D~~i~~wd~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~  254 (380)
T 3iz6_a          177 SGDQTCVLWDVTTGQRISIFG--SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS  254 (380)
T ss_dssp             CTTSCEEEECTTTCCEEEEEC--CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred             CCCCcEEEEEcCCCcEEEEee--cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE
Confidence            999999999998876422111  111234668899999987 889999999999999999974 4555566778889999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      ++|+|++++|++++.|+.|++||+++++++..+..+..      ..+.+++|+|+|++     +++++.||.|++||+.+
T Consensus       255 v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~g~~dg~i~vwd~~~  329 (380)
T 3iz6_a          255 VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL-----LFAGYSNGDCYVWDTLL  329 (380)
T ss_dssp             EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE-----EEEECTTSCEEEEETTT
T ss_pred             EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE-----EEEEECCCCEEEEECCC
Confidence            99999999999999999999999999998887764332      13889999999998     68899999999999998


Q ss_pred             CeEEeee----eccCcCeeEEEEeeCCCEEeC
Q 024868          234 WNKIGHK----RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       234 ~~~~~~~----~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ++.+..+    ..|...|.+++|+|||++||+
T Consensus       330 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  361 (380)
T 3iz6_a          330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCT  361 (380)
T ss_dssp             CCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred             CceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence            8877655    468889999999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.9e-34  Score=224.77  Aligned_cols=239  Identities=13%  Similarity=0.177  Sum_probs=191.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .++|+|++|+|+  ...++++|+.|+        .|..||...... ........+.+|...|.+++|+|++++|++++.
T Consensus        38 ~~~V~~v~~sp~--~~~~l~S~s~D~--------~i~vWd~~~~~~-~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           38 NGWVTQIATTPQ--FPDMILSASRDK--------TIIMWKLTRDET-NYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             SSCEEEEEECTT--CTTEEEEEETTS--------CEEEEEECCSSS-CSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCEEEEEEeCC--CCCEEEEEcCCC--------eEEEEECCCCCc-ccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            689999999986  256999999999        666666554332 112335578899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccce------------------------------------eeeeCCCCCCCCCeEEEEEeeCC--c
Q 024868           84 NGGCKLFEVYGGATDINL------------------------------------LAKKMPPLQDAGPQKCLSFSVDG--S  125 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~v~~~~~s~~~--~  125 (261)
                      |+.|++|+..........                                    .........+...+..++|++++  .
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence            999999998765431100                                    00011223345788999998864  5


Q ss_pred             EEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEE
Q 024868          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (261)
Q Consensus       126 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  205 (261)
                      ++++++.|+.|++||+++++....+..|...|.+++|+|++++|++++.|+.|++||+++++++..+..+  ..+.+++|
T Consensus       187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~  264 (340)
T 4aow_A          187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCF  264 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeec
Confidence            7888999999999999999988888888889999999999999999999999999999999998888754  35999999


Q ss_pred             ecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee---------ccCcCeeEEEEeeCCCEEeC
Q 024868          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---------LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---------~~~~~v~~~~~s~dg~~la~  261 (261)
                      +|++..      ++++.|+.|++||++++..+..+.         .|...|.+++|+|||++||+
T Consensus       265 ~~~~~~------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  323 (340)
T 4aow_A          265 SPNRYW------LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA  323 (340)
T ss_dssp             CSSSSE------EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred             CCCCce------eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence            998874      566678999999999887654433         46678999999999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-36  Score=244.56  Aligned_cols=248  Identities=13%  Similarity=0.136  Sum_probs=185.0

Q ss_pred             CceeeEEEEEeeCCc------ceEEEEecCCCC-------------CCCCCceEEEEEcCCCCceecCCeEEeeecCCCC
Q 024868            4 GGTVTCGSWIKRPEN------VNLVVLGKSSRA-------------SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG   64 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~------~~~~~~g~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   64 (261)
                      +++|++++|+|++..      ..++|+|..+..             .+.++.++||.++......    .....+.+|.+
T Consensus       133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~----~~~~~l~~~~~  208 (524)
T 2j04_B          133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC----VKVQTIVHSFG  208 (524)
T ss_dssp             CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE----EEEEEEEECCC
T ss_pred             CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc----eEEEEEEecCC
Confidence            689999999998622      267887764421             1234456666655433211    11234667889


Q ss_pred             CceEEEECCC------CCeEEEEecCCcEEEEEEeCCccccc---eeeee-CCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           65 DPMTIAVNPS------GDDFVCSTTNGGCKLFEVYGGATDIN---LLAKK-MPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        65 ~v~~~~~~~~------~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      .|.+++|+|+      +.+||+++.||+|++||+........   ..... .....|...|.+++|+|++ .|++|+.||
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg  287 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG  287 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence            9999999996      57999999999999999986643110   00000 1112356889999999864 799999999


Q ss_pred             eEEEEEccCceE-EeeccccCCceeEE--EEcCCC-CEEEEecCCCcEEEEEccCCcEEEEEeecCC-CceEEEEEecCC
Q 024868          135 HLRIMHWPSLRI-ILDEPKAHKSVLDM--DFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDG  209 (261)
Q Consensus       135 ~i~~~d~~~~~~-~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~p~~  209 (261)
                      +|++||++++.. ...+..|...|.++  .|+|++ ++|++++.|++|+|||++++++...+..+.. ..+.+++|+|++
T Consensus       288 tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~  367 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI  367 (524)
T ss_dssp             EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT
T ss_pred             EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc
Confidence            999999987643 23456677899999  578888 8999999999999999999887777766543 247899999999


Q ss_pred             CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +.     +++++.|++|++||++++..+..+..|...|.+++|||+|++||+
T Consensus       368 ~~-----l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S  414 (524)
T 2j04_B          368 YS-----YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA  414 (524)
T ss_dssp             TE-----EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred             Ce-----EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE
Confidence            87     688899999999999998877778889999999999999998873

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=225.89  Aligned_cols=235  Identities=16%  Similarity=0.133  Sum_probs=195.6

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|++++|+|+   ..++++|+.++        .|..||..+...      ...+.+|...|.+++|+|++++|++++
T Consensus        31 h~~~v~~~~~s~~---~~~l~~~~~dg--------~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~   93 (369)
T 3zwl_B           31 HERPLTQVKYNKE---GDLLFSCSKDS--------SASVWYSLNGER------LGTLDGHTGTIWSIDVDCFTKYCVTGS   93 (369)
T ss_dssp             CSSCEEEEEECTT---SCEEEEEESSS--------CEEEEETTTCCE------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeceEEEEEEcCC---CCEEEEEeCCC--------EEEEEeCCCchh------hhhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence            3678999999995   56899999998        888888877664      567888999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceee------------------e---------e----------------------C-CCCCCC
Q 024868           83 TNGGCKLFEVYGGATDINLLA------------------K---------K----------------------M-PPLQDA  112 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~------------------~---------~----------------------~-~~~~~~  112 (261)
                      .||.|++||+.+++.......                  .         .                      . ....+.
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  173 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE  173 (369)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred             CCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence            999999999987654211100                  0         0                      0 000011


Q ss_pred             --CCeEEEEEeeCCcEEEEeccCCeEEEEEccC-ceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE
Q 024868          113 --GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (261)
Q Consensus       113 --~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~  189 (261)
                        ..+.+++|+|++++|++++.||.|++||+++ .+....+..+...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  253 (369)
T 3zwl_B          174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL  253 (369)
T ss_dssp             TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence              1889999999999999999999999999998 6666667777789999999999999999999999999999999998


Q ss_pred             EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc--------------EEEEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--------------LLAVYDISTWNKIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       190 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~--------------~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d  255 (261)
                      ..+.  ....+..++|+|++++     ++.++.++              .+++||+.+++.+..+..|...|.+++|+|+
T Consensus       254 ~~~~--~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~  326 (369)
T 3zwl_B          254 KKYE--TDCPLNTAVITPLKEF-----IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQ  326 (369)
T ss_dssp             EEEE--CSSCEEEEEECSSSSE-----EEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             eeec--CCCCceeEEecCCCce-----EEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCC
Confidence            8887  3346999999999998     45666665              8999999999999888999999999999999


Q ss_pred             CCEEeC
Q 024868          256 GKYLAM  261 (261)
Q Consensus       256 g~~la~  261 (261)
                      |++|++
T Consensus       327 ~~~l~s  332 (369)
T 3zwl_B          327 GTSYAS  332 (369)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.7e-35  Score=230.85  Aligned_cols=234  Identities=12%  Similarity=0.166  Sum_probs=187.6

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|+|++|+|+.....++++|+.++        .|..||..+...    .....+.+|...|.+++|+|++++|++++
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~~dg--------~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGSWAN--------DVRCWEVQDSGQ----TIPKAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEETTS--------EEEEEEECTTSC----EEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEEcCCCCCceEEEEECCCC--------cEEEEEcCCCCc----eeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence            468999999999632257999999999        777787765221    12356788999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEE--eeCCcEEEEeccCCeEEEEEccCceEEeecccc-------
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF--SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-------  153 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------  153 (261)
                      .||.|++||+.++..        .....|...|.+++|  +|++++|++++.|+.|++||+++++.+..+..+       
T Consensus       106 ~dg~v~iwd~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  177 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQA--------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD  177 (368)
T ss_dssp             TTSEEEEEETTTTEE--------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred             CCCcEEEEEcCCCCc--------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence            999999999988764        223346789999999  889999999999999999999876543322211       


Q ss_pred             ----------------------------------CCceeEEEEcCCCCE----EEEecCCCcEEEEEccCC---cEEEEE
Q 024868          154 ----------------------------------HKSVLDMDFSLDSEF----LATTSTDGSARIWKTEDG---VAWTFL  192 (261)
Q Consensus       154 ----------------------------------~~~v~~~~~s~~~~~----l~~~~~d~~i~iwd~~~~---~~~~~~  192 (261)
                                                        ...+.++.+.++...    +++++.|+.|++||++..   +.+..+
T Consensus       178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  257 (368)
T 3mmy_A          178 VIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF  257 (368)
T ss_dssp             EETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred             ecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence                                              123445555554444    999999999999999887   455666


Q ss_pred             eecCCC-----------ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          193 TRNSDE-----------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       193 ~~~~~~-----------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ..+...           +|.+++|+|++++     +++++.||.|++||+++++.+..+..|...|.+++|+|||++||+
T Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-----LATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             ECSEEC----CCCEEECCEEEEEECTTTCC-----EEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred             eeeecccccccccccccceEEEEEecCCCE-----EEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEE
Confidence            655432           5999999999998     689999999999999999999888889999999999999999874

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-35  Score=232.67  Aligned_cols=233  Identities=13%  Similarity=0.117  Sum_probs=191.1

Q ss_pred             CCceeeEEEEEeeCCc-ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEE
Q 024868            3 GGGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~   80 (261)
                      ...+|++++|+|+... ..++++|+.++        .|..||..+...      ...+.+|...|.+++|+| ++++|++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg--------~i~v~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~s  133 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRG--------IIRIINPITMQC------IKHYVGHGNAINELKFHPRDPNLLLS  133 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTC--------EEEEECTTTCCE------EEEEESCCSCEEEEEECSSCTTEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCC--------EEEEEEchhceE------eeeecCCCCcEEEEEECCCCCCEEEE
Confidence            3467999999997532 56899999999        999999887664      556788999999999999 9999999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc---------
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP---------  151 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---------  151 (261)
                      ++.||.|++||+.+++.....    .....+...|.+++|+|++++|++++.|+.|++||+++++....+.         
T Consensus       134 ~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  209 (366)
T 3k26_A          134 VSKDHALRLWNIQTDTLVAIF----GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK  209 (366)
T ss_dssp             EETTSCEEEEETTTTEEEEEE----CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGG
T ss_pred             EeCCCeEEEEEeecCeEEEEe----cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCC
Confidence            999999999999877542111    1113467899999999999999999999999999998765433222         


Q ss_pred             -------------------ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE--------------EEEEeecCCC
Q 024868          152 -------------------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--------------WTFLTRNSDE  198 (261)
Q Consensus       152 -------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~  198 (261)
                                         .+...|.+++|+  ++++++++.|+.|++||+.+++.              +..+..+.. 
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  286 (366)
T 3k26_A          210 TNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-  286 (366)
T ss_dssp             CSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-
T ss_pred             CcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC-
Confidence                               266789999999  77999999999999999987644              666666655 


Q ss_pred             ceEEEEEecC--CCcceEEEEEeeCCCcEEEEEECCCCeE----Eeeeecc--CcCeeEEEEeeCCCEEeC
Q 024868          199 KIELCRFSKD--GTKPFLFCTVQRGDKALLAVYDISTWNK----IGHKRLL--RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       199 ~v~~~~~~p~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~--~~~v~~~~~s~dg~~la~  261 (261)
                      .+.+++|+|+  +++     +++++.||.|++||+++++.    ...+..+  ...|.+++|+|+|++|++
T Consensus       287 ~v~~~~~s~~~~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  352 (366)
T 3k26_A          287 DIWYMRFSMDFWQKM-----LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA  352 (366)
T ss_dssp             CSSCCCCEECTTSSE-----EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             cEEEEEEcCCCCCcE-----EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEE
Confidence            5999999999  887     68899999999999998753    3355556  689999999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4e-34  Score=222.51  Aligned_cols=233  Identities=14%  Similarity=0.126  Sum_probs=193.0

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|++++|+|+   ..++++++ ++        .+..||..+.... ..........|...|.+++|+|++++|++++
T Consensus        50 h~~~v~~~~~~~~---~~~l~~~~-dg--------~i~iw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  116 (337)
T 1gxr_A           50 HGEVVCAVTISNP---TRHVYTGG-KG--------CVKVWDISHPGNK-SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CSSCCCEEEECSS---SSEEEEEC-BS--------EEEEEETTSTTCC-SCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEEecC---CcEEEEcC-CC--------eEEEEECCCCCce-eeeecccccCCCCcEEEEEEcCCCCEEEEEc
Confidence            4678999999985   56788877 78        7888887665421 1222333347889999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .|+.|++||+.+......     .....+...+.+++|+|+++++++++.|+.|++||+++++....+..|...+.+++|
T Consensus       117 ~d~~i~~~d~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~  191 (337)
T 1gxr_A          117 EASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             SSSEEEEEECCCC--EEE-----EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCCcEEEEECCCCCccee-----eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence            999999999987653111     112235678999999999999999999999999999999888877778889999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      +|++++|++++.|+.|++||+++++.+..+.  ....+.+++|+|++++     +++++.++.|++||+++++.. .+..
T Consensus       192 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~-----l~~~~~~~~i~~~~~~~~~~~-~~~~  263 (337)
T 1gxr_A          192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-----LAVGMESSNVEVLHVNKPDKY-QLHL  263 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTSSCEE-EECC
T ss_pred             CCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCE-----EEEEcCCCcEEEEECCCCCeE-EEcC
Confidence            9999999999999999999999999887775  3346999999999998     678888999999999988765 5667


Q ss_pred             cCcCeeEEEEeeCCCEEeC
Q 024868          243 LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la~  261 (261)
                      +...+.+++|+|++++|++
T Consensus       264 ~~~~v~~~~~~~~~~~l~~  282 (337)
T 1gxr_A          264 HESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEE
T ss_pred             CccceeEEEECCCCCEEEE
Confidence            8899999999999998874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.5e-34  Score=245.55  Aligned_cols=233  Identities=12%  Similarity=0.160  Sum_probs=192.9

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|+|++|+|+  +..++++|+.|+        .|..|+....... .......+.+|...|.+++|+|++++|++++
T Consensus       381 H~~~V~~v~~~~~--~~~~l~s~s~D~--------~i~~W~~~~~~~~-~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs  449 (694)
T 3dm0_A          381 HTDMVTAIATPID--NADIIVSASRDK--------SIILWKLTKDDKA-YGVAQRRLTGHSHFVEDVVLSSDGQFALSGS  449 (694)
T ss_dssp             CSSCEEEEECCTT--CCSEEEEEETTS--------EEEEEECCCSTTC-SCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCceeEEEEecCC--CCCEEEEEeCCC--------cEEEEEccCCCcc-cccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence            3678999999875  357999999999        7888877553211 1223456889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec---cccCCceeE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHKSVLD  159 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~  159 (261)
                      .|++|++||+.++....       ....|...|.+++|+|++++|++++.|++|++||..........   ..|...|.+
T Consensus       450 ~Dg~v~vwd~~~~~~~~-------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~  522 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTR-------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC  522 (694)
T ss_dssp             TTSEEEEEETTTTEEEE-------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred             CCCcEEEEECCCCccee-------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence            99999999998775421       12346789999999999999999999999999998655432221   245567999


Q ss_pred             EEEcCCC--CEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          160 MDFSLDS--EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       160 ~~~s~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                      ++|+|++  ..+++++.|+.|++||++++++...+..|.. .|++++|+|++++     +++++.|+.|++||+++++.+
T Consensus       523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~-----l~sg~~Dg~i~iwd~~~~~~~  596 (694)
T 3dm0_A          523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSL-----CASGGKDGVVLLWDLAEGKKL  596 (694)
T ss_dssp             EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSBCEEEETTTTEEE
T ss_pred             EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCceE
Confidence            9999987  5799999999999999999999988887765 6999999999998     789999999999999999987


Q ss_pred             eeeeccCcCeeEEEEeeCCCEEe
Q 024868          238 GHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       238 ~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ..+. +...+.+++|+|++.+|+
T Consensus       597 ~~~~-~~~~v~~~~~sp~~~~l~  618 (694)
T 3dm0_A          597 YSLE-ANSVIHALCFSPNRYWLC  618 (694)
T ss_dssp             ECCB-CSSCEEEEEECSSSSEEE
T ss_pred             EEec-CCCcEEEEEEcCCCcEEE
Confidence            6554 456899999999999886

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.1e-34  Score=244.71  Aligned_cols=229  Identities=15%  Similarity=0.158  Sum_probs=189.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.+++|+|+   ..++++|+.|+        .|..||..+...      ...+.+|...|.+++|+|++++|++++.
T Consensus       430 ~~~v~~v~~s~~---g~~l~sgs~Dg--------~v~vwd~~~~~~------~~~~~~h~~~v~~~~~s~~~~~l~s~s~  492 (694)
T 3dm0_A          430 SHFVEDVVLSSD---GQFALSGSWDG--------ELRLWDLAAGVS------TRRFVGHTKDVLSVAFSLDNRQIVSASR  492 (694)
T ss_dssp             SSCEEEEEECTT---SSEEEEEETTS--------EEEEEETTTTEE------EEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCcEEEEEECCC---CCEEEEEeCCC--------cEEEEECCCCcc------eeEEeCCCCCEEEEEEeCCCCEEEEEeC
Confidence            578999999985   56899999999        999999887664      5578899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC--cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      |++|++||...... ..   .......|...|.+++|+|++  ..+++++.|++|++||+++++....+..|.+.|.+++
T Consensus       493 D~~i~iwd~~~~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~  568 (694)
T 3dm0_A          493 DRTIKLWNTLGECK-YT---ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVA  568 (694)
T ss_dssp             TSCEEEECTTSCEE-EE---ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CCEEEEEECCCCcc-ee---eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            99999999754432 11   111223466789999999986  5799999999999999999888878888888999999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      |+|++++|++++.|+.|++||+++++++..+..+  ..+.+++|+|++.+     +++ +.++.|++||+++++.+..+.
T Consensus       569 ~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~-----l~~-~~~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          569 VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNRYW-----LCA-ATEHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             ECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSSSE-----EEE-EETTEEEEEETTTTEEEEEEC
T ss_pred             EeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCCcE-----EEE-EcCCCEEEEECCCCCChhhhc
Confidence            9999999999999999999999999988776643  35999999999886     344 445679999999988775543


Q ss_pred             ccC-------------------cCeeEEEEeeCCCEEeC
Q 024868          242 LLR-------------------KPASVLSISLDGKYLAM  261 (261)
Q Consensus       242 ~~~-------------------~~v~~~~~s~dg~~la~  261 (261)
                      .+.                   ..+.+++|+|||++|++
T Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s  679 (694)
T 3dm0_A          641 VDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS  679 (694)
T ss_dssp             CCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence            221                   13678999999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.6e-34  Score=228.66  Aligned_cols=239  Identities=14%  Similarity=0.107  Sum_probs=191.7

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC----C---
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----G---   75 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~---   75 (261)
                      ..++|++++|+|     .++++|+.++        .|..|+..+............+.+|...|.+++|+|+    +   
T Consensus        15 h~~~i~~~~~~~-----~~l~s~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A           15 HDADIFSVSACN-----SFTVSCSGDG--------YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             SSSCEEEEEECS-----SEEEEEETTS--------EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             hhcCeEEEEecC-----CeEEEEcCCC--------EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc
Confidence            467999999987     3899999999        8888888766511111224567789999999999999    9   


Q ss_pred             CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCC---CCCeEEEEEe----eCCcE-EEEeccCCeEEEEEccC----
Q 024868           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD---AGPQKCLSFS----VDGSR-FAAGGVDGHLRIMHWPS----  143 (261)
Q Consensus        76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s----~~~~~-l~~~~~d~~i~~~d~~~----  143 (261)
                      ++|++++.|+.|++|++.+.................   ...|.+++|+    |++++ |++++.|+.|++||+.+    
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence            999999999999999998876422211111111111   3789999999    99999 99999999999999988    


Q ss_pred             --ceEEe-----ec-------cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee---c---CCCceEEE
Q 024868          144 --LRIIL-----DE-------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---N---SDEKIELC  203 (261)
Q Consensus       144 --~~~~~-----~~-------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~---~~~~v~~~  203 (261)
                        ++.+.     .+       ..+...+.+++|+|++ ++++++.|+.|++||+++++++..+..   |   .. .+.++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i  239 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN-SIRSV  239 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC-CEEEE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC-ccceE
Confidence              55443     33       3356689999999999 999999999999999999999988887   5   44 69999


Q ss_pred             EEecCCCcceEEEEEeeCCC---cEEEEEECCCCeEEeeeec-------------cCcCeeEEEEeeCCCEEeC
Q 024868          204 RFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRL-------------LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d---~~i~~~d~~~~~~~~~~~~-------------~~~~v~~~~~s~dg~~la~  261 (261)
                      +|+|++++     +++++.|   +.|++||+++++.+..+..             |...+.+++|+|++++|++
T Consensus       240 ~~~~~~~~-----l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  308 (397)
T 1sq9_A          240 KFSPQGSL-----LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  308 (397)
T ss_dssp             EECSSTTE-----EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             EECCCCCE-----EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence            99999998     6788888   9999999999998888887             8899999999999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=227.37  Aligned_cols=233  Identities=12%  Similarity=0.105  Sum_probs=185.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~   80 (261)
                      ..++|++++|+|+   ..++++|+.++        .|..||......    .....+.+|...|.+++|+|+  +++|++
T Consensus        10 h~~~v~~~~~s~~---~~~l~~~~~dg--------~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A           10 HNELIHDAVLDYY---GKRLATCSSDK--------TIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             CCCCEEEEEECSS---SSEEEEEETTS--------CEEEEEEETTEE----EEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CcccEEEEEEcCC---CCEEEEEECCC--------cEEEEecCCCcc----eeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence            3678999999996   56899998888        666666543221    225568899999999999987  999999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCce--EEeeccccCCc
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKS  156 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~  156 (261)
                      ++.||.|++||+.++....     ......+...|.+++|+|+  +++|++++.|+.|++||+++..  .......+...
T Consensus        75 ~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  149 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQ-----IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  149 (379)
T ss_dssp             EETTSCEEEEEEETTEEEE-----EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred             eccCCEEEEEEcCCCceeE-----eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence            9999999999999875211     1122235688999999999  9999999999999999998763  33344567778


Q ss_pred             eeEEEEcC-------------CCCEEEEecCCCcEEEEEccCCc----EEEEEeecCCCceEEEEEecC---CCcceEEE
Q 024868          157 VLDMDFSL-------------DSEFLATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKD---GTKPFLFC  216 (261)
Q Consensus       157 v~~~~~s~-------------~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~---~~~~~~~~  216 (261)
                      |.+++|+|             ++.++++++.|+.|++||+++++    ....+..|.. .|.+++|+|+   +++     
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~-----  223 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSY-----  223 (379)
T ss_dssp             EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEE-----
T ss_pred             eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCe-----
Confidence            99999999             69999999999999999998765    3345555544 6999999999   776     


Q ss_pred             EEeeCCCcEEEEEECCCCe-----EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          217 TVQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       217 ~~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +++++.||.|++||+++++     .+.....+...+.+++|+|+|++|++
T Consensus       224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  273 (379)
T 3jrp_A          224 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  273 (379)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred             EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence            6889999999999999864     22222336788999999999998874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.7e-34  Score=225.98  Aligned_cols=238  Identities=15%  Similarity=0.154  Sum_probs=189.6

Q ss_pred             CCceeeEEEEEee----CCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-----CCCceEEEEC-
Q 024868            3 GGGTVTCGSWIKR----PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-----EGDPMTIAVN-   72 (261)
Q Consensus         3 ~~~~v~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~-   72 (261)
                      ...+|++++|+|+    .....++++++.++        .|..|+..+.... .......+..|     ...|.+++|+ 
T Consensus        61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg--------~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (397)
T 1sq9_A           61 HKSGLHHVDVLQAIERDAFELCLVATTSFSG--------DLLFYRITREDET-KKVIFEKLDLLDSDMKKHSFWALKWGA  131 (397)
T ss_dssp             CTTCEEEEEEEEEEETTTEEEEEEEEEETTS--------CEEEEEEEECTTT-CCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred             CCCcEEEEEEecccccCCccccEEEEEcCCC--------CEEEEEccCCccc-ccccceeecccccccCCCcEEEEEEee
Confidence            3578999999996    21116899998888        6666665544320 11113456667     5899999999 


Q ss_pred             ---CCCCe-EEEEecCCcEEEEEEeC------Ccccc-----ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868           73 ---PSGDD-FVCSTTNGGCKLFEVYG------GATDI-----NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (261)
Q Consensus        73 ---~~~~~-l~~~~~dg~i~i~~~~~------~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  137 (261)
                         |+++. |++++.||.|++||+..      .....     .+.........+...+.+++|+|++ ++++++.|+.|+
T Consensus       132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~  210 (397)
T 1sq9_A          132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQ  210 (397)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE
T ss_pred             ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEE
Confidence               99999 99999999999999998      44322     1110000113356789999999999 999999999999


Q ss_pred             EEEccCceEEeeccc---c---CCceeEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEee-------------c
Q 024868          138 IMHWPSLRIILDEPK---A---HKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTR-------------N  195 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~---~---~~~v~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~-------------~  195 (261)
                      +||+++++.+..+..   |   ...+.+++|+|++++|++++.|   +.|++||+++++++..+..             +
T Consensus       211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (397)
T 1sq9_A          211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH  290 (397)
T ss_dssp             EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred             EEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence            999999888777776   6   7799999999999999999999   9999999999999998887             5


Q ss_pred             CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee------cc---------------CcCeeEEEEee
Q 024868          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR------LL---------------RKPASVLSISL  254 (261)
Q Consensus       196 ~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~------~~---------------~~~v~~~~~s~  254 (261)
                      .. .|.+++|+|++++     +++++.|+.|++||+++++.+..+.      .+               ...|.+++|+|
T Consensus       291 ~~-~v~~~~~~~~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~  364 (397)
T 1sq9_A          291 SS-WVMSLSFNDSGET-----LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK  364 (397)
T ss_dssp             SS-CEEEEEECSSSSE-----EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred             CC-cEEEEEECCCCCE-----EEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence            54 6999999999998     6889999999999999999988888      67               88999999999


Q ss_pred             CC
Q 024868          255 DG  256 (261)
Q Consensus       255 dg  256 (261)
                      +|
T Consensus       365 ~g  366 (397)
T 1sq9_A          365 KG  366 (397)
T ss_dssp             TT
T ss_pred             cc
Confidence            98

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=232.29  Aligned_cols=240  Identities=9%  Similarity=0.113  Sum_probs=194.5

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~   81 (261)
                      ...+|++++|+|+   ..++++|+.++        .+..||......  .......+.+|...|.+++|+|+ +++|+++
T Consensus        66 ~~~~v~~~~~s~~---~~~l~~~~~dg--------~v~vw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  132 (416)
T 2pm9_A           66 VDSKFNDLDWSHN---NKIIAGALDNG--------SLELYSTNEANN--AINSMARFSNHSSSVKTVKFNAKQDNVLASG  132 (416)
T ss_dssp             CSSCEEEEEECSS---SSCEEEEESSS--------CEEEECCSSTTS--CCCEEEECCCSSSCCCEEEECSSSTTBEEEE
T ss_pred             cCCceEEEEECCC---CCeEEEEccCC--------eEEEeecccccc--cccchhhccCCccceEEEEEcCCCCCEEEEE
Confidence            4578999999985   56888998888        777888765211  01125577889999999999998 8999999


Q ss_pred             ecCCcEEEEEEeCCccccce--eeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCceEEeecccc-----
Q 024868           82 TTNGGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA-----  153 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----  153 (261)
                      +.|+.|++||+.+.......  .........+...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+     
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  212 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG  212 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred             cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence            99999999999877521100  0000122346688999999998 789999999999999999998887766655     


Q ss_pred             -CCceeEEEEcCCC-CEEEEecCCC---cEEEEEccCC-cEEEEEe-ecCCCceEEEEEec-CCCcceEEEEEeeCCCcE
Q 024868          154 -HKSVLDMDFSLDS-EFLATTSTDG---SARIWKTEDG-VAWTFLT-RNSDEKIELCRFSK-DGTKPFLFCTVQRGDKAL  225 (261)
Q Consensus       154 -~~~v~~~~~s~~~-~~l~~~~~d~---~i~iwd~~~~-~~~~~~~-~~~~~~v~~~~~~p-~~~~~~~~~~~~~~~d~~  225 (261)
                       ...+.+++|+|++ .++++++.|+   .|++||++++ +++..+. .|.. .|.+++|+| ++++     +++++.|+.
T Consensus       213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~-----l~s~~~dg~  286 (416)
T 2pm9_A          213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHL-----LLSSGRDNT  286 (416)
T ss_dssp             CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSC-----EEEEESSSE
T ss_pred             cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCe-----EEEEeCCCC
Confidence             5689999999997 6899999998   9999999986 5666666 5544 699999999 8887     688999999


Q ss_pred             EEEEECCCCeEEeeeeccCcCeeEEEEeeCC-CEEeC
Q 024868          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAM  261 (261)
Q Consensus       226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg-~~la~  261 (261)
                      |++||+++++.+..+..|...+.+++|+|++ ++|++
T Consensus       287 v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s  323 (416)
T 2pm9_A          287 VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC  323 (416)
T ss_dssp             EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEE
T ss_pred             EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEE
Confidence            9999999999998889999999999999999 77763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.3e-35  Score=237.80  Aligned_cols=230  Identities=16%  Similarity=0.181  Sum_probs=176.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~   82 (261)
                      ...|+|++|+|.  ..+++|+|+.+|        .|..||..+...    .....+.+|.+.|++++|+| ++++|++++
T Consensus       119 ~~~V~~l~~~P~--~~~~lasGs~dg--------~i~lWd~~~~~~----~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          119 DRRATSLAWHPT--HPSTVAVGSKGG--------DIMLWNFGIKDK----PTFIKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             SSCEEEEEECSS--CTTCEEEEETTS--------CEEEECSSCCSC----CEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             CCCEEEEEEeCC--CCCEEEEEeCCC--------EEEEEECCCCCc----eeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            356999999985  356899999999        888888765542    22445678999999999998 789999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .||+|++||+++.....     ......+...+.+++|+|++++|++|+.||.|++||++. +.+..+..|...|.+++|
T Consensus       185 ~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~  258 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRV-----FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVAL  258 (435)
T ss_dssp             SSSCEEEEETTSCEEEE-----EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEE
T ss_pred             CCCEEEEeeccCCceeE-----EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeee
Confidence            99999999997654211     111122345678899999999999999999999999864 445666778889999999


Q ss_pred             cCCCC-EEEEecCCCcEEEEEccCCcEEEEE---eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868          163 SLDSE-FLATTSTDGSARIWKTEDGVAWTFL---TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (261)
Q Consensus       163 s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  238 (261)
                      +|++. ++++++.|+.|++||+++.+....+   ..| ..+|++++|+|+|++     +++++.|+.|++||+++++...
T Consensus       259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~spdg~~-----l~s~~~D~~i~iwd~~~~~~~~  332 (435)
T 4e54_B          259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH-RHPVNAACFSPDGAR-----LLTTDQKSEIRVYSASQWDCPL  332 (435)
T ss_dssp             CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC-SSCEEECCBCTTSSE-----EEEEESSSCEEEEESSSSSSEE
T ss_pred             cCCCceEEEEecCcceeeEEecccccccceEEEeeec-cccccceeECCCCCe-----eEEEcCCCEEEEEECCCCccce
Confidence            99876 6789999999999999876644333   234 446999999999998     6899999999999999887665


Q ss_pred             eeeccCc------CeeEEEEeeCCCEE
Q 024868          239 HKRLLRK------PASVLSISLDGKYL  259 (261)
Q Consensus       239 ~~~~~~~------~v~~~~~s~dg~~l  259 (261)
                      .+..+..      .+....|+|++.++
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (435)
T 4e54_B          333 GLIPHPHRHFQHLTPIKAAWHPRYNLI  359 (435)
T ss_dssp             EECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred             EEecccccccccceeEEEEEcCCCCEE
Confidence            5443321      22334555555544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-34  Score=230.12  Aligned_cols=233  Identities=20%  Similarity=0.233  Sum_probs=195.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .++|++++|+|+   ..++++|+.++        .+..||... ..      ...+..|...|.+++|+|++++|++++.
T Consensus       108 ~~~v~~~~~s~~---~~~l~~~~~dg--------~i~i~~~~~-~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (425)
T 1r5m_A          108 TNQVTCLAWSHD---GNSIVTGVENG--------ELRLWNKTG-AL------LNVLNFHRAPIVSVKWNKDGTHIISMDV  169 (425)
T ss_dssp             CBCEEEEEECTT---SSEEEEEETTS--------CEEEEETTS-CE------EEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCceEEEEEcCC---CCEEEEEeCCC--------eEEEEeCCC-Ce------eeeccCCCccEEEEEECCCCCEEEEEec
Confidence            458999999995   56889998888        777787433 22      5567889999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeee-------------------------------------------------CCCCCCCCC
Q 024868           84 NGGCKLFEVYGGATDINLLAKK-------------------------------------------------MPPLQDAGP  114 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~  114 (261)
                      |+.|++||+.++..........                                                 .....+...
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  249 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP  249 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC
T ss_pred             CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc
Confidence            9999999997665322110000                                                 011134678


Q ss_pred             eEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee
Q 024868          115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR  194 (261)
Q Consensus       115 v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  194 (261)
                      |.+++|+|++++|++++.|+.|++||+++++....+..+...+.+++|+|++ ++++++.|+.|++||+++++.+..+..
T Consensus       250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~  328 (425)
T 1r5m_A          250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV  328 (425)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc
Confidence            9999999999999999999999999999988777777788899999999999 999999999999999999999988887


Q ss_pred             cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe--------------------EEeeeeccCc--CeeEEEE
Q 024868          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--------------------KIGHKRLLRK--PASVLSI  252 (261)
Q Consensus       195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~--------------------~~~~~~~~~~--~v~~~~~  252 (261)
                      +.. ++.+++|+|++++     +++++.||.|++||+++++                    .+..+..+..  .|.+++|
T Consensus       329 ~~~-~i~~~~~s~~~~~-----l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  402 (425)
T 1r5m_A          329 DGV-PIFAGRISQDGQK-----YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW  402 (425)
T ss_dssp             TTC-CEEEEEECTTSSE-----EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE
T ss_pred             CCc-cEEEEEEcCCCCE-----EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc
Confidence            655 6999999999998     6888899999999999887                    7777777765  9999999


Q ss_pred             eeCCCEEeC
Q 024868          253 SLDGKYLAM  261 (261)
Q Consensus       253 s~dg~~la~  261 (261)
                      +|++++|++
T Consensus       403 s~~~~~l~~  411 (425)
T 1r5m_A          403 NCAGNKISV  411 (425)
T ss_dssp             CTTSSEEEE
T ss_pred             cCCCceEEE
Confidence            999999873

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=233.40  Aligned_cols=241  Identities=12%  Similarity=0.141  Sum_probs=184.7

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCce-----ecCCeEEeeecCCC------------CC
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV-----YTSPLVTYVFDESE------------GD   65 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~------------~~   65 (261)
                      ..++|+|++|+|+   ..++++|+.++        .|..||..+...     .........+.+|.            ..
T Consensus        27 ~~~~V~~v~~s~~---g~~la~g~~dg--------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~   95 (447)
T 3dw8_B           27 EADIISTVEFNHS---GELLATGDKGG--------RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK   95 (447)
T ss_dssp             GGGSEEEEEECSS---SSEEEEEETTS--------EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred             ccCcEEEEEECCC---CCEEEEEcCCC--------eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence            4689999999995   66899999999        777777665431     01112355678898            88


Q ss_pred             ceEEEECCCC--CeEEEEecCCcEEEEEEeCCcccccee--------------------------------e-eeCCCCC
Q 024868           66 PMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLL--------------------------------A-KKMPPLQ  110 (261)
Q Consensus        66 v~~~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~--------------------------------~-~~~~~~~  110 (261)
                      |.+++|+|++  ..|++++.|+.|++|++..........                                . .......
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            9999999998  789999999999999997643210000                                0 0001234


Q ss_pred             CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee--------ccccCCceeEEEEcCCC-CEEEEecCCCcEEEE
Q 024868          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--------EPKAHKSVLDMDFSLDS-EFLATTSTDGSARIW  181 (261)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~iw  181 (261)
                      |...|.+++|+|++++|+++ .|+.|++||+++......        +..|...|.+++|+|++ ++|++++.|+.|++|
T Consensus       176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  254 (447)
T 3dw8_B          176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC  254 (447)
T ss_dssp             CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence            67899999999999999999 799999999985443332        44667789999999998 999999999999999


Q ss_pred             EccCCcE----EEEEeecCC-----------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC-CeEEeeeeccCc
Q 024868          182 KTEDGVA----WTFLTRNSD-----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRK  245 (261)
Q Consensus       182 d~~~~~~----~~~~~~~~~-----------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~  245 (261)
                      |+++++.    +..+..+..           ..|.+++|+|+|++     +++++. +.|++||+++ ++.+..+..|..
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~  328 (447)
T 3dw8_B          255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-----MMTRDY-LSVKVWDLNMENRPVETYQVHEY  328 (447)
T ss_dssp             ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-----EEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred             ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-----EEEeeC-CeEEEEeCCCCccccceeecccc
Confidence            9999886    677776653           26999999999998     577777 9999999997 777777776653


Q ss_pred             C---------------eeEEEEeeCCCEEeC
Q 024868          246 P---------------ASVLSISLDGKYLAM  261 (261)
Q Consensus       246 ~---------------v~~~~~s~dg~~la~  261 (261)
                      .               +..++|+|+|++|++
T Consensus       329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s  359 (447)
T 3dw8_B          329 LRSKLCSLYENDCIFDKFECCWNGSDSVVMT  359 (447)
T ss_dssp             GTTTHHHHHHTSGGGCCCCEEECTTSSEEEE
T ss_pred             ccccccccccccccccceEEEECCCCCEEEE
Confidence            2               234999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-33  Score=218.51  Aligned_cols=228  Identities=14%  Similarity=0.208  Sum_probs=191.4

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|.+++|+|+   ..++++++.++        .+..||..+...    .....+..|...+.+++|+|++++|++++
T Consensus        96 ~~~~v~~~~~~~~---~~~l~~~~~d~--------~i~~~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  160 (337)
T 1gxr_A           96 RDNYIRSCKLLPD---GCTLIVGGEAS--------TLSIWDLAAPTP----RIKAELTSSAPACYALAISPDSKVCFSCC  160 (337)
T ss_dssp             TTSBEEEEEECTT---SSEEEEEESSS--------EEEEEECCCC------EEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEEcCC---CCEEEEEcCCC--------cEEEEECCCCCc----ceeeecccCCCceEEEEECCCCCEEEEEe
Confidence            4578999999995   56888998888        888888876552    23556778999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .||.|++||+.+++....       ...+...+.+++|+|++++|++++.|+.|++||+++++..... .+...+.+++|
T Consensus       161 ~dg~v~~~d~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~  232 (337)
T 1gxr_A          161 SDGNIAVWDLHNQTLVRQ-------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGY  232 (337)
T ss_dssp             TTSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEE
T ss_pred             CCCcEEEEeCCCCceeee-------eecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEE
Confidence            999999999987654211       1235678999999999999999999999999999988876543 46678999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      +|+++++++++.++.|++||+++++.. .+..+. .++.+++|+|++++     +++++.||.|++||+++++.+. ...
T Consensus       233 s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~-----l~~~~~dg~i~~~~~~~~~~~~-~~~  304 (337)
T 1gxr_A          233 CPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE-SCVLSLKFAYCGKW-----FVSTGKDNLLNAWRTPYGASIF-QSK  304 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS-SCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCEEE-EEE
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc-cceeEEEECCCCCE-----EEEecCCCcEEEEECCCCeEEE-Eec
Confidence            999999999999999999999988764 444444 46999999999998     6888899999999999988774 345


Q ss_pred             cCcCeeEEEEeeCCCEEeC
Q 024868          243 LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la~  261 (261)
                      +...+.+++|+|++++|++
T Consensus       305 ~~~~v~~~~~s~~~~~l~~  323 (337)
T 1gxr_A          305 ESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             CSSCEEEEEECTTSCEEEE
T ss_pred             CCCcEEEEEECCCCCEEEE
Confidence            7789999999999999873

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.4e-34  Score=237.81  Aligned_cols=223  Identities=16%  Similarity=0.240  Sum_probs=190.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.+++|+|+   ..++++++.++        .+..||.....       ...+.+|...+.+++|+|++++|++++.
T Consensus       303 ~~~v~~~~~~~~---~~~l~t~~~d~--------~i~~w~~~~~~-------~~~~~~~~~~v~~~~~s~~g~~l~~~~~  364 (577)
T 2ymu_A          303 SSSVWGVAFSPD---GQTIASASDDK--------TVKLWNRNGQH-------LQTLTGHSSSVWGVAFSPDGQTIASASD  364 (577)
T ss_dssp             SSCEEEEEECTT---SSEEEEEETTS--------CEEEEETTSCE-------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEECCC---CCEEEEEeCCC--------eEEEEeCCCCe-------eEEEeCCCCCEEEEEECCCCCEEEEEeC
Confidence            578999999985   56888998888        77777766544       3457789999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      |+.+++|+......        .....|...|.+++|+|++++|++++.|+.|++||. +++....+..|...|.+++|+
T Consensus       365 dg~v~~~~~~~~~~--------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s  435 (577)
T 2ymu_A          365 DKTVKLWNRNGQLL--------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS  435 (577)
T ss_dssp             TSEEEEEETTCCEE--------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC
T ss_pred             CCEEEEEcCCCCEE--------EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC
Confidence            99999999543221        112235678999999999999999999999999995 566666777788899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  243 (261)
                      |++++|++++.|+.|++||. +++.+..+..|.. .|++++|+|++++     +++++.|+.|++||. +++.+..+..|
T Consensus       436 ~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~-~v~~~~~spd~~~-----las~~~d~~i~iw~~-~~~~~~~~~~h  507 (577)
T 2ymu_A          436 PDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAFSPDGQT-----IASASDDKTVKLWNR-NGQLLQTLTGH  507 (577)
T ss_dssp             TTSSEEEEEETTSEEEEEET-TSCEEEEEECCSS-CEEEEEECTTSCE-----EEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred             CCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC-CEEEEEEcCCCCE-----EEEEeCCCEEEEEcC-CCCEEEEEeCC
Confidence            99999999999999999996 5677788877765 6999999999998     688999999999995 57788888899


Q ss_pred             CcCeeEEEEeeCCCEEeC
Q 024868          244 RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       244 ~~~v~~~~~s~dg~~la~  261 (261)
                      ...|.+++|+|||++||+
T Consensus       508 ~~~v~~l~~s~dg~~l~s  525 (577)
T 2ymu_A          508 SSSVRGVAFSPDGQTIAS  525 (577)
T ss_dssp             SSCEEEEEECTTSSCEEE
T ss_pred             CCCEEEEEEcCCCCEEEE
Confidence            999999999999999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.6e-34  Score=230.51  Aligned_cols=239  Identities=10%  Similarity=0.150  Sum_probs=188.9

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCC-eEEeeecCCCCCceEEEECCCC-CeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-LVTYVFDESEGDPMTIAVNPSG-DDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~   80 (261)
                      ..++|++++|+|.  +..++++|+.++        .|..||..+....... .....+.+|...|.+++|+|++ +.|++
T Consensus        80 h~~~V~~~~~~p~--~~~~l~s~s~dg--------~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s  149 (402)
T 2aq5_A           80 HTAPVLDIAWCPH--NDNVIASGSEDC--------TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLS  149 (402)
T ss_dssp             CSSCEEEEEECTT--CTTEEEEEETTS--------EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEE
T ss_pred             CCCCEEEEEeCCC--CCCEEEEEeCCC--------eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEE
Confidence            3678999999983  256999999999        8888887765321110 1234677899999999999998 68999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec-cccCCc-ee
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PKAHKS-VL  158 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~-v~  158 (261)
                      ++.|+.|++||+.+++....     .....|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|.+. +.
T Consensus       150 ~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  224 (402)
T 2aq5_A          150 AGCDNVILVWDVGTGAAVLT-----LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPV  224 (402)
T ss_dssp             EETTSCEEEEETTTTEEEEE-----ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCC
T ss_pred             EcCCCEEEEEECCCCCccEE-----EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcce
Confidence            99999999999988764211     111346789999999999999999999999999999999887776 555554 89


Q ss_pred             EEEEcCCCCEEEEe---cCCCcEEEEEccCCcE-EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          159 DMDFSLDSEFLATT---STDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       159 ~~~~s~~~~~l~~~---~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      ++.|+|++++|+++   +.|+.|++||+++++. +......+...+.+++|+|+++++    +++++.|+.|++||+.++
T Consensus       225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l----~~~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV----YLCGKGDSSIRYFEITSE  300 (402)
T ss_dssp             EEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE----EEEETTCSCEEEEEECSS
T ss_pred             EEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE----EEEEcCCCeEEEEEecCC
Confidence            99999999999999   7899999999998664 334433334469999999999983    256778999999999988


Q ss_pred             eE-Eeeeec--cCcCeeEEEEeeCCCEEe
Q 024868          235 NK-IGHKRL--LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       235 ~~-~~~~~~--~~~~v~~~~~s~dg~~la  260 (261)
                      +. +..+..  +...+.+++|+|++.+++
T Consensus       301 ~~~~~~l~~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          301 APFLHYLSMFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             TTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred             CcceEeecccccCCcccceEEecccccce
Confidence            73 333333  458999999999998775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.2e-34  Score=247.47  Aligned_cols=229  Identities=10%  Similarity=0.087  Sum_probs=200.5

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .++|.|++|+|+   ..++++|+.++        .|..||..++..      ...+..|...|.+++|+|++++|++++.
T Consensus        13 ~~~v~~i~~sp~---~~~la~~~~~g--------~v~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~   75 (814)
T 3mkq_A           13 SDRVKGIDFHPT---EPWVLTTLYSG--------RVEIWNYETQVE------VRSIQVTETPVRAGKFIARKNWIIVGSD   75 (814)
T ss_dssp             CSCEEEEEECSS---SSEEEEEETTS--------EEEEEETTTTEE------EEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEECCC---CCEEEEEeCCC--------EEEEEECCCCce------EEEEecCCCcEEEEEEeCCCCEEEEEeC
Confidence            578999999996   56899999888        889999877664      5567789999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc-eEEeeccccCCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~  162 (261)
                      ||.|++||+.+++....       ...|...|.+++|+|++++|++++.||.|++||+.++ ........|...|.+++|
T Consensus        76 dg~i~vw~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~  148 (814)
T 3mkq_A           76 DFRIRVFNYNTGEKVVD-------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (814)
T ss_dssp             TSEEEEEETTTCCEEEE-------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred             CCeEEEEECCCCcEEEE-------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence            99999999988764221       1235688999999999999999999999999999887 555556667778999999


Q ss_pred             cC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec--CCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       163 s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      +| +++.+++++.|+.|++||+.+++....+..+....+..++|+|  ++++     +++++.||.|++||+++++.+..
T Consensus       149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~~~~~dg~i~~~d~~~~~~~~~  223 (814)
T 3mkq_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVAT  223 (814)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-----EEEECTTSEEEEEETTTTEEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-----EEEEeCCCEEEEEECCCCcEEEE
Confidence            99 8999999999999999999998888888777656799999999  8887     68899999999999999999888


Q ss_pred             eeccCcCeeEEEEeeCCCEEeC
Q 024868          240 KRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +..|...+.+++|+|+|++|++
T Consensus       224 ~~~~~~~v~~~~~~~~~~~l~~  245 (814)
T 3mkq_A          224 LEGHMSNVSFAVFHPTLPIIIS  245 (814)
T ss_dssp             EECCSSCEEEEEECSSSSEEEE
T ss_pred             EcCCCCCEEEEEEcCCCCEEEE
Confidence            8889999999999999998874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.8e-34  Score=228.83  Aligned_cols=226  Identities=12%  Similarity=0.150  Sum_probs=182.8

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      .+.+.+|+|+   ..++++|+.++        .+..||..+...      ...+.+|...|.+++|+|++++|++++.|+
T Consensus        99 ~~~~~~~~~~---~~~l~~~~~dg--------~i~iwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~  161 (420)
T 3vl1_A           99 YTAVDTAKLQ---MRRFILGTTEG--------DIKVLDSNFNLQ------REIDQAHVSEITKLKFFPSGEALISSSQDM  161 (420)
T ss_dssp             EEEEEEECSS---SCEEEEEETTS--------CEEEECTTSCEE------EEETTSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceEEEEEecC---CCEEEEEECCC--------CEEEEeCCCcce------eeecccccCccEEEEECCCCCEEEEEeCCC
Confidence            3444456664   56899999999        888889876654      556679999999999999999999999999


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc---C--------
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---H--------  154 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~--------  154 (261)
                      .|++||+.+++....       ...|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+   .        
T Consensus       162 ~i~iwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          162 QLKIWSVKDGSNPRT-------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             EEEEEETTTCCCCEE-------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred             eEEEEeCCCCcCceE-------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence            999999987764221       1235789999999999999999999999999999998877665532   2        


Q ss_pred             -------------CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC-cceEEEEEee
Q 024868          155 -------------KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-KPFLFCTVQR  220 (261)
Q Consensus       155 -------------~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~~~~~~~~  220 (261)
                                   ..+.+++|+|++++|++++.|+.|++||+++++.+..+...+...+.+++|+|+++ +     ++++
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~~g  309 (420)
T 3vl1_A          235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANY-----IYAG  309 (420)
T ss_dssp             EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTE-----EEEE
T ss_pred             ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCE-----EEEE
Confidence                         33445556889999999999999999999999988888765566799999999999 5     6889


Q ss_pred             CCCcEEEEEECCCCeE-Eeeeec-cCcCeeEEEEeeCCCEEeC
Q 024868          221 GDKALLAVYDISTWNK-IGHKRL-LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~-~~~~~~-~~~~v~~~~~s~dg~~la~  261 (261)
                      +.||.|++||+++++. +..+.. +...+.++ +.+++++|++
T Consensus       310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s  351 (420)
T 3vl1_A          310 YENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVS  351 (420)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEE
T ss_pred             eCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEE
Confidence            9999999999998754 555555 56677777 5567877763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.6e-34  Score=230.47  Aligned_cols=242  Identities=14%  Similarity=0.155  Sum_probs=188.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec----CCeEEeeecCCCCCceEEEECCCCC-eE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT----SPLVTYVFDESEGDPMTIAVNPSGD-DF   78 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~-~l   78 (261)
                      .++|.+++|+|+  +..++++|+.++        .|..|+........    .......+.+|...|.+++|+|+++ +|
T Consensus       128 ~~~v~~l~~~p~--~~~~lat~~~dg--------~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  197 (430)
T 2xyi_A          128 EGEVNRARYMPQ--NACVIATKTPSS--------DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL  197 (430)
T ss_dssp             SSCCSEEEEETT--EEEEEEEECSSS--------CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred             CCcEEEEEECCC--CCcEEEEECCCC--------cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence            578999999984  257899998888        66666654310000    0122346778999999999999988 99


Q ss_pred             EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCc---eEEeeccccC
Q 024868           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAH  154 (261)
Q Consensus        79 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~  154 (261)
                      ++++.||.|++|++..................|...|.+++|+| ++.+|++++.|+.|++||++++   +....+..|.
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence            99999999999999875432222211122235668899999999 6789999999999999999876   3444555677


Q ss_pred             CceeEEEEcCCCC-EEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          155 KSVLDMDFSLDSE-FLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       155 ~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      ..|.+++|+|+++ ++++++.|+.|++||+++ ++++..+..|.. .|.+++|+|+++.+    +++++.|+.|++||+.
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~----l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETI----LASSGTDRRLHVWDLS  352 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTE----EEEEETTSCCEEEEGG
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCE----EEEEeCCCcEEEEeCC
Confidence            7899999999887 688999999999999997 566777776655 69999999999763    5788899999999998


Q ss_pred             C--------------CeEEeeeeccCcCeeEEEEeeCCC-EEe
Q 024868          233 T--------------WNKIGHKRLLRKPASVLSISLDGK-YLA  260 (261)
Q Consensus       233 ~--------------~~~~~~~~~~~~~v~~~~~s~dg~-~la  260 (261)
                      .              .+.+.....|...|.+++|+|+++ +|+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~  395 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC  395 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred             CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence            6              245556667888999999999999 554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-33  Score=217.62  Aligned_cols=195  Identities=19%  Similarity=0.282  Sum_probs=171.6

Q ss_pred             eEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC
Q 024868           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (261)
Q Consensus        54 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (261)
                      .....+.+|...|.+++|+|++++|++++.||.|++|++.+++...       ....|...|.+++|+|++++|++++.|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l~s~~~d   86 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------TISGHKLGISDVAWSSDSNLLVSASDD   86 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-------EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch-------hhccCCCceEEEEEcCCCCEEEEECCC
Confidence            3466788999999999999999999999999999999998765421       122456789999999999999999999


Q ss_pred             CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  213 (261)
                      +.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|.. ++.+++|+|++++  
T Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~--  163 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSL--  163 (312)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSE--
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC-cEEEEEEcCCCCE--
Confidence            9999999999988888888888999999999999999999999999999999999988887655 6999999999998  


Q ss_pred             EEEEEeeCCCcEEEEEECCCCeEEeeee-ccCcCeeEEEEeeCCCEEeC
Q 024868          214 LFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       214 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~dg~~la~  261 (261)
                         +++++.|+.|++||+++++.+..+. .+...+..++|+|++++|++
T Consensus       164 ---l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  209 (312)
T 4ery_A          164 ---IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  209 (312)
T ss_dssp             ---EEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred             ---EEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence               6889999999999999988776554 44567899999999999873

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.4e-33  Score=220.11  Aligned_cols=240  Identities=14%  Similarity=0.086  Sum_probs=188.8

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--CCCeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~   80 (261)
                      ...+|+|++|+|+   ..++++|+.++        .|..||..+...  .......+.+|...|.+++|+|  ++++|++
T Consensus        10 H~~~v~~~~~~~~---~~~l~~~~~dg--------~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s   76 (351)
T 3f3f_A           10 HDDLVHDVVYDFY---GRHVATCSSDQ--------HIKVFKLDKDTS--NWELSDSWRAHDSSIVAIDWASPEYGRIIAS   76 (351)
T ss_dssp             CSSCEEEEEECSS---SSEEEEEETTS--------EEEEEEECSSSC--CEEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred             cccceeEEEEcCC---CCEEEEeeCCC--------eEEEEECCCCCC--cceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence            4679999999995   56899999999        777777765431  1123456788999999999999  6999999


Q ss_pred             EecCCcEEEEEEeCCccccc--eeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCceEEeecc-----
Q 024868           81 STTNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEP-----  151 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----  151 (261)
                      ++.||.|++||+..+.....  ..........+...|.+++|+|+  +++|++++.|+.|++||+++++.+..+.     
T Consensus        77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  156 (351)
T 3f3f_A           77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM  156 (351)
T ss_dssp             EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred             EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence            99999999999987643110  00111222346789999999999  9999999999999999998765432211     


Q ss_pred             --------ccCCceeEEEEcCC---CCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCC----CcceE
Q 024868          152 --------KAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG----TKPFL  214 (261)
Q Consensus       152 --------~~~~~v~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~----~~~~~  214 (261)
                              .+...+.+++|+|+   +.++++++.++.+.+|+...++.  +..+..|.. .|++++|+|++    ++   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~---  232 (351)
T 3f3f_A          157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQL---  232 (351)
T ss_dssp             ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEE---
T ss_pred             cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceE---
Confidence                    34567999999997   89999999999998888877765  555555544 69999999998    55   


Q ss_pred             EEEEeeCCCcEEEEEECCCC----------------------------------------------eEEeeeeccCcCee
Q 024868          215 FCTVQRGDKALLAVYDISTW----------------------------------------------NKIGHKRLLRKPAS  248 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~~~~----------------------------------------------~~~~~~~~~~~~v~  248 (261)
                        +++++.||.|++||++++                                              +.+..+..|...|.
T Consensus       233 --l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  310 (351)
T 3f3f_A          233 --IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW  310 (351)
T ss_dssp             --EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred             --EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence              688999999999999864                                              45566677889999


Q ss_pred             EEEEeeCCCEEeC
Q 024868          249 VLSISLDGKYLAM  261 (261)
Q Consensus       249 ~~~~s~dg~~la~  261 (261)
                      +++|+|+|++|++
T Consensus       311 ~~~~s~~~~~l~s  323 (351)
T 3f3f_A          311 SVSWNLTGTILSS  323 (351)
T ss_dssp             EEEECSSSCCEEE
T ss_pred             EEEEcCCCCEEEE
Confidence            9999999998874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.1e-34  Score=227.20  Aligned_cols=236  Identities=10%  Similarity=0.093  Sum_probs=183.5

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEecCCc
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGG   86 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~   86 (261)
                      .+++++|+  ...+++.++.++        .|..|+.......  ......+.+|.+.|.+++|+| ++++|++++.||.
T Consensus        38 ~~~~~~~~--~~~~~~~~~~~g--------~i~v~~~~~~~~~--~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~  105 (402)
T 2aq5_A           38 GFCAVNPK--FMALICEASGGG--------AFLVLPLGKTGRV--DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT  105 (402)
T ss_dssp             CSEEECSS--EEEEEBCCSSSC--------CEEEEETTCCEEC--CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CcEEECCC--eEEEEEEEcCCC--------EEEEEECccCCCC--CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCe
Confidence            34566653  244555677778        7777776443211  011234778999999999999 9999999999999


Q ss_pred             EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeec--cccCCceeEEEEc
Q 024868           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE--PKAHKSVLDMDFS  163 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~s  163 (261)
                      |++|++.++...............|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+  ..|...|.+++|+
T Consensus       106 v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  185 (402)
T 2aq5_A          106 VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS  185 (402)
T ss_dssp             EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred             EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence            99999988743111101111222467899999999998 69999999999999999999887777  6677899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEE-eecCCCceEEEEEecCCCcceEEEEEee---CCCcEEEEEECCCCeE-Ee
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDISTWNK-IG  238 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~~~~~~~~~---~~d~~i~~~d~~~~~~-~~  238 (261)
                      |++++|++++.|+.|++||+++++.+..+ ..+....+.++.|+|++++     ++++   +.|+.|++||+++++. +.
T Consensus       186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~g~~~~~d~~i~iwd~~~~~~~~~  260 (402)
T 2aq5_A          186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI-----LTTGFSRMSERQVALWDTKHLEEPLS  260 (402)
T ss_dssp             TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE-----EEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred             CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE-----EEEeccCCCCceEEEEcCccccCCce
Confidence            99999999999999999999999999888 5565545899999999987     5666   7899999999998664 22


Q ss_pred             eee-ccCcCeeEEEEeeCCCEEe
Q 024868          239 HKR-LLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       239 ~~~-~~~~~v~~~~~s~dg~~la  260 (261)
                      ... .+...+.+++|+|++++|+
T Consensus       261 ~~~~~~~~~v~~~~~s~~~~~l~  283 (402)
T 2aq5_A          261 LQELDTSSGVLLPFFDPDTNIVY  283 (402)
T ss_dssp             EEECCCCSSCEEEEEETTTTEEE
T ss_pred             EEeccCCCceeEEEEcCCCCEEE
Confidence            222 4567899999999999886

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=224.91  Aligned_cols=233  Identities=15%  Similarity=0.200  Sum_probs=183.6

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcC----CCCceecCCeEEeeec----------CCCCCceEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP----KTTSVYTSPLVTYVFD----------ESEGDPMTI   69 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~----------~~~~~v~~~   69 (261)
                      .++|++++|+|+.  ..++++|+.++        .+..|+.    .+............+.          +|.+.|.++
T Consensus        45 ~~~v~~~~~s~~~--~~~l~~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (425)
T 1r5m_A           45 LDNIVSSTWNPLD--ESILAYGEKNS--------VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCL  114 (425)
T ss_dssp             CSCCSEEEECSSC--TTEEEEEETBT--------EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEE
T ss_pred             cCceEEEEECCCC--CcEEEEecCCc--------eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEE
Confidence            3689999999962  33899999888        7777777    5544100000111222          267799999


Q ss_pred             EECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee
Q 024868           70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD  149 (261)
Q Consensus        70 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~  149 (261)
                      +|+|++++|++++.||.|++||. ++...       .....|...|.+++|+|++++|++++.|+.|++||+.+++....
T Consensus       115 ~~s~~~~~l~~~~~dg~i~i~~~-~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          115 AWSHDGNSIVTGVENGELRLWNK-TGALL-------NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             EECTTSSEEEEEETTSCEEEEET-TSCEE-------EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEeC-CCCee-------eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence            99999999999999999999993 33221       11223568899999999999999999999999999977654321


Q ss_pred             --------------------------------------------------------ccccCCceeEEEEcCCCCEEEEec
Q 024868          150 --------------------------------------------------------EPKAHKSVLDMDFSLDSEFLATTS  173 (261)
Q Consensus       150 --------------------------------------------------------~~~~~~~v~~~~~s~~~~~l~~~~  173 (261)
                                                                              +..+...|.+++|+|++++|++++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  266 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS  266 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence                                                                    123455789999999999999999


Q ss_pred             CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868          174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (261)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  253 (261)
                      .|+.|++||+++++.+..+..+.. .+.+++|+|++ .     +++++.|+.|++||+++++.+..+..+...+.+++|+
T Consensus       267 ~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~-----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          267 DDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-K-----VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             TTSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-E-----EEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             CCCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-E-----EEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence            999999999999998888876655 69999999999 5     5888999999999999999988888889999999999


Q ss_pred             eCCCEEeC
Q 024868          254 LDGKYLAM  261 (261)
Q Consensus       254 ~dg~~la~  261 (261)
                      |++++|++
T Consensus       340 ~~~~~l~~  347 (425)
T 1r5m_A          340 QDGQKYAV  347 (425)
T ss_dssp             TTSSEEEE
T ss_pred             CCCCEEEE
Confidence            99999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-33  Score=223.38  Aligned_cols=227  Identities=13%  Similarity=0.154  Sum_probs=189.1

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|++++|+|+   ..++++|+.++        .+..||..+...      ...+.+|...|.+++|  +++.|++++
T Consensus       133 ~~~~v~~v~~s~~---~~~l~~~~~dg--------~i~iwd~~~~~~------~~~~~~~~~~v~~~~~--~~~~l~~~~  193 (401)
T 4aez_A          133 ESTYVASVKWSHD---GSFLSVGLGNG--------LVDIYDVESQTK------LRTMAGHQARVGCLSW--NRHVLSSGS  193 (401)
T ss_dssp             TTCCEEEEEECTT---SSEEEEEETTS--------CEEEEETTTCCE------EEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             CCCCEEEEEECCC---CCEEEEECCCC--------eEEEEECcCCeE------EEEecCCCCceEEEEE--CCCEEEEEc
Confidence            3678999999995   56899999998        888888877654      5567799999999999  567999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .||.|++||+........      ....|...|.+++|+|++++|++++.|+.|++||+++++....+..+...|.+++|
T Consensus       194 ~dg~i~i~d~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~  267 (401)
T 4aez_A          194 RSGAIHHHDVRIANHQIG------TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW  267 (401)
T ss_dssp             TTSEEEEEETTSSSCEEE------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEE
T ss_pred             CCCCEEEEecccCcceee------EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEE
Confidence            999999999985443221      12235689999999999999999999999999999998888777788889999999


Q ss_pred             cCCCC-EEEEec--CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEe--eCCCcEEEEEECCCCeEE
Q 024868          163 SLDSE-FLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ--RGDKALLAVYDISTWNKI  237 (261)
Q Consensus       163 s~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~--~~~d~~i~~~d~~~~~~~  237 (261)
                      +|++. ++++++  .|+.|++||+++++++..+..  ...+.+++|+|++++     +++  ++.||.|++||+++++..
T Consensus       268 ~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~-----l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKE-----IMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             CTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSE-----EEEEECTTTCEEEEEEEETTEEE
T ss_pred             CCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCe-----EEEEeecCCCcEEEEecCCccce
Confidence            99765 555654  799999999999999888863  336999999999998     344  668999999999987654


Q ss_pred             e--eeeccCcCeeEEEEeeCCCEEeC
Q 024868          238 G--HKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       238 ~--~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .  .+..|...|.+++|+|||++|++
T Consensus       341 ~~~~~~~h~~~v~~~~~s~dg~~l~s  366 (401)
T 4aez_A          341 KQVDIPAHDTRVLYSALSPDGRILST  366 (401)
T ss_dssp             EEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred             eEEEecCCCCCEEEEEECCCCCEEEE
Confidence            3  35678899999999999999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.6e-33  Score=222.12  Aligned_cols=229  Identities=17%  Similarity=0.097  Sum_probs=179.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|.+++|+|+  +..++++++.++        .+..||..+...    ........|...|.+++|+|++++|++++
T Consensus       117 h~~~v~~~~~~~~--~~~~l~s~~~d~--------~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  182 (383)
T 3ei3_B          117 PGDAITGMKFNQF--NTNQLFVSSIRG--------ATTLRDFSGSVI----QVFAKTDSWDYWYCCVDVSVSRQMLATGD  182 (383)
T ss_dssp             TTCBEEEEEEETT--EEEEEEEEETTT--------EEEEEETTSCEE----EEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred             cCCceeEEEeCCC--CCCEEEEEeCCC--------EEEEEECCCCce----EEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence            4689999999983  257899999999        888898876442    11122234457899999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccC----ceEEeeccccCCce
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPS----LRIILDEPKAHKSV  157 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~v  157 (261)
                      .|+.|++||+.....        .....|...|.+++|+|+++ ++++++.|+.|++||+++    +..+.. ..+...|
T Consensus       183 ~d~~i~i~d~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v  253 (383)
T 3ei3_B          183 STGRLLLLGLDGHEI--------FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-MPHEKPV  253 (383)
T ss_dssp             TTSEEEEEETTSCEE--------EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-EECSSCE
T ss_pred             CCCCEEEEECCCCEE--------EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-ecCCCce
Confidence            999999999843221        11224568999999999998 899999999999999987    444433 3677899


Q ss_pred             eEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecC------CC----------ceEEEEEecCCCcceEEEEEee
Q 024868          158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------DE----------KIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       158 ~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~----------~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                      .+++|+| ++++|++++.|+.|++||+++++....+..+.      ..          .+..++|+|+++      + ++
T Consensus       254 ~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~------~-s~  326 (383)
T 3ei3_B          254 NAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ------L-LL  326 (383)
T ss_dssp             EEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT------T-CT
T ss_pred             EEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc------c-cc
Confidence            9999999 99999999999999999999888766665442      11          233355555554      2 67


Q ss_pred             CCCcEEEEEECCCCeEEeeeec--cCcCeeEEEEeeCCCEEeC
Q 024868          221 GDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~dg~~la~  261 (261)
                      +.|+.|++||+++++.+..+..  +...+..++|+|||++||+
T Consensus       327 s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s  369 (383)
T 3ei3_B          327 NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS  369 (383)
T ss_dssp             TCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred             CCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence            7899999999999998887776  4467778899999999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.9e-33  Score=221.82  Aligned_cols=213  Identities=17%  Similarity=0.235  Sum_probs=173.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~   82 (261)
                      ..+|++++|+|+.  ..++++|+.++        .|..||..+...    .......+|...|.+++|+| ++++|++++
T Consensus        73 ~~~v~~~~~~~~~--~~~l~s~~~dg--------~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  138 (383)
T 3ei3_B           73 DRRVTSLEWHPTH--PTTVAVGSKGG--------DIILWDYDVQNK----TSFIQGMGPGDAITGMKFNQFNTNQLFVSS  138 (383)
T ss_dssp             SSCEEEEEECSSC--TTEEEEEEBTS--------CEEEEETTSTTC----EEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEECCCC--CCEEEEEcCCC--------eEEEEeCCCccc----ceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence            5789999999962  37999999999        788888876553    22333457999999999999 789999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .|+.|++||+.+...  .   .......+...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|
T Consensus       139 ~d~~i~iwd~~~~~~--~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~  212 (383)
T 3ei3_B          139 IRGATTLRDFSGSVI--Q---VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEF  212 (383)
T ss_dssp             TTTEEEEEETTSCEE--E---EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred             CCCEEEEEECCCCce--E---EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence            999999999986332  1   11122234578999999999999999999999999998 56666777778889999999


Q ss_pred             cCCCC-EEEEecCCCcEEEEEccC----CcEEEEEeecCCCceEEEEEec-CCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          163 SLDSE-FLATTSTDGSARIWKTED----GVAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       163 s~~~~-~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~p-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      +|+++ ++++++.|+.|++||+++    ++++..+ .+ ...|.+++|+| ++++     +++++.|+.|++||+++++.
T Consensus       213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~~-----l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PH-EKPVNAAYFNPTDSTK-----LLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-EC-SSCEEEEEECTTTSCE-----EEEEESSSEEEEEETTBTTS
T ss_pred             CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cC-CCceEEEEEcCCCCCE-----EEEEcCCCcEEEEECCCCcc
Confidence            99999 899999999999999997    6666666 34 44699999999 9998     68889999999999998876


Q ss_pred             Eeeeecc
Q 024868          237 IGHKRLL  243 (261)
Q Consensus       237 ~~~~~~~  243 (261)
                      +..+..+
T Consensus       286 ~~~~~~~  292 (383)
T 3ei3_B          286 PDQIIIH  292 (383)
T ss_dssp             CSEEEEC
T ss_pred             ccccccc
Confidence            5555433

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.9e-33  Score=222.35  Aligned_cols=235  Identities=15%  Similarity=0.183  Sum_probs=185.8

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      +...+++|++    .++|++|. ++        .|+.||..++++    .....+.+|...|++++|+|+|++|++|+.|
T Consensus       106 ~y~~~l~wS~----~n~lAvgl-d~--------tV~lWd~~tg~~----~~~~~~~~~~~~V~sv~fspdg~~lasgs~D  168 (420)
T 4gga_A          106 YYLNLVDWSS----GNVLAVAL-DN--------SVYLWSASSGDI----LQLLQMEQPGEYISSVAWIKEGNYLAVGTSS  168 (420)
T ss_dssp             TTCBCEEECT----TSEEEEEE-TT--------EEEEEETTTCCE----EEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ccceeEEECC----CCEEEEEe-CC--------EEEEEECCCCCE----EEEEEecCCCCcEEEEEECCCCCEEEEEECC
Confidence            3456789986    45788774 77        899999988775    2234556788899999999999999999999


Q ss_pred             CcEEEEEEeCCccccceee----------------------------------eeCCCCCCCCCeEEEEEeeCCcEEEEe
Q 024868           85 GGCKLFEVYGGATDINLLA----------------------------------KKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~  130 (261)
                      |.|++||+.+++.......                                  .......|...+..+.|+|++++++++
T Consensus       169 g~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~  248 (420)
T 4gga_A          169 AEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG  248 (420)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             CeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeee
Confidence            9999999987654211100                                  000112345788999999999999999


Q ss_pred             ccCCeEEEEEccCceE----EeeccccCCceeEEEEcCCCC-EEEE--ecCCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868          131 GVDGHLRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSE-FLAT--TSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (261)
Q Consensus       131 ~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~-~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  203 (261)
                      +.|+.+++|+..+++.    +.....+...|.+++|+|++. ++++  ++.|+.|++||+.++++...+..+.  .+.++
T Consensus       249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~~  326 (420)
T 4gga_A          249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSI  326 (420)
T ss_dssp             ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEEE
T ss_pred             eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc--ceeee
Confidence            9999999999987653    234456667899999999655 5544  4679999999999999988887543  48999


Q ss_pred             EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .|+|+++.++   ..++..|+.|++||+++++++..+.+|...|.+++|+|||++||+
T Consensus       327 ~~~~~~~~lv---~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S  381 (420)
T 4gga_A          327 LWSPHYKELI---SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS  381 (420)
T ss_dssp             EEETTTTEEE---EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             eecCCCCeEE---EEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            9999999832   244568999999999999999999999999999999999999874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.3e-33  Score=221.34  Aligned_cols=232  Identities=15%  Similarity=0.124  Sum_probs=184.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|++++|+|+   ..++++|+.++        .|..||..+...      ...+.+|...|.+++|+|++++|++++
T Consensus       138 h~~~v~~~~~~~~---~~~l~s~s~d~--------~i~iwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~  200 (420)
T 3vl1_A          138 HVSEITKLKFFPS---GEALISSSQDM--------QLKIWSVKDGSN------PRTLIGHRATVTDIAIIDRGRNVLSAS  200 (420)
T ss_dssp             SSSCEEEEEECTT---SSEEEEEETTS--------EEEEEETTTCCC------CEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             ccCccEEEEECCC---CCEEEEEeCCC--------eEEEEeCCCCcC------ceEEcCCCCcEEEEEEcCCCCEEEEEc
Confidence            4678999999995   55899999999        899999877654      446788999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCC-----------------CCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMP-----------------PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  145 (261)
                      .|+.|++||+.+++...........                 ...+...+.+++|+|++++|++++.||.|++||+++++
T Consensus       201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE  280 (420)
T ss_dssp             TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred             CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9999999999877642222110000                 00012455556678899999999999999999999988


Q ss_pred             EEeeccc-cCCceeEEEEcCCCC-EEEEecCCCcEEEEEccCCc-EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC
Q 024868          146 IILDEPK-AHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (261)
Q Consensus       146 ~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~  222 (261)
                      ....... +...+.+++|+|+++ +|++++.|+.|++||+++++ ++..+..++...+.++.| |++++     +++++.
T Consensus       281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-----l~s~~~  354 (420)
T 3vl1_A          281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGAL-----FVSSGF  354 (420)
T ss_dssp             EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEE-----EEEETT
T ss_pred             eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCE-----EEEecC
Confidence            7766655 456899999999999 99999999999999999875 477787767767888855 57776     689999


Q ss_pred             CcEEEEEECCCCeE---------EeeeeccCcCeeEEEEeeCCC
Q 024868          223 KALLAVYDISTWNK---------IGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       223 d~~i~~~d~~~~~~---------~~~~~~~~~~v~~~~~s~dg~  257 (261)
                      |+.|++||+...+.         ......+...+.+++|+||++
T Consensus       355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence            99999999876321         123445678899999999998

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.9e-34  Score=222.05  Aligned_cols=235  Identities=12%  Similarity=0.179  Sum_probs=186.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc-eecCCeEEeeecCCCCCceEEE------ECCCCC
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-VYTSPLVTYVFDESEGDPMTIA------VNPSGD   76 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~------~~~~~~   76 (261)
                      ..+|.+++|+|+..+..++++|+.++        .+..||..+.. .      ...+.+|...|.+++      |+|+++
T Consensus        65 ~~~v~~~~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~s~~~~  130 (357)
T 3i2n_A           65 AKPIKCGTFGATSLQQRYLATGDFGG--------NLHIWNLEAPEMP------VYSVKGHKEIINAIDGIGGLGIGEGAP  130 (357)
T ss_dssp             SSCEEEEECTTCCTTTCCEEEEETTS--------CEEEECTTSCSSC------SEEECCCSSCEEEEEEESGGGCC-CCC
T ss_pred             cCcEEEEEEcCCCCCCceEEEecCCC--------eEEEEeCCCCCcc------EEEEEecccceEEEeeccccccCCCcc
Confidence            56899999999632357899999999        88888887654 2      345778999999995      578999


Q ss_pred             eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEE----EeeCCcEEEEeccCCeEEEEEccCceEEeeccc
Q 024868           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLS----FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (261)
Q Consensus        77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  152 (261)
                      .|++++.||.|++||+............  ..-.....+.+++    |+|+++++++++.|+.|++||+++++.. ....
T Consensus       131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~  207 (357)
T 3i2n_A          131 EIVTGSRDGTVKVWDPRQKDDPVANMEP--VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETN  207 (357)
T ss_dssp             EEEEEETTSCEEEECTTSCSSCSEEECC--CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-EEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCCCcceeccc--cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-eecC
Confidence            9999999999999999887632222111  1111234788888    7889999999999999999999988874 3456


Q ss_pred             cCCceeEEEEcC---CCCEEEEecCCCcEEEEEccCCcEEEEEe-----ecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868          153 AHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVAWTFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (261)
Q Consensus       153 ~~~~v~~~~~s~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~  224 (261)
                      +...+.+++|+|   +++++++++.|+.|++||++++++...+.     .|. ..|.+++|+|+++.+    +++++.||
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~----l~~~~~dg  282 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK-STVWQVRHLPQNREL----FLTAGGAG  282 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS-SCEEEEEEETTEEEE----EEEEETTS
T ss_pred             CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc-CCEEEEEECCCCCcE----EEEEeCCC
Confidence            677899999999   99999999999999999998776544443     454 469999999999832    68899999


Q ss_pred             EEEEEECCCC-------------------eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          225 LLAVYDISTW-------------------NKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       225 ~i~~~d~~~~-------------------~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .|++||++++                   +.+..+..|...|.+++|+|+|++|+
T Consensus       283 ~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  337 (357)
T 3i2n_A          283 GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC  337 (357)
T ss_dssp             EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred             cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence            9999999754                   35566778889999999999999886

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-34  Score=228.11  Aligned_cols=242  Identities=14%  Similarity=0.193  Sum_probs=188.8

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec---CCeEEeeecCCCCCceEEEECCC-CCeE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT---SPLVTYVFDESEGDPMTIAVNPS-GDDF   78 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l   78 (261)
                      ..++|.+++|+|+  +..++++|+.++        .|..||..+.....   .......+..|...|.+++|+|+ +.+|
T Consensus       112 h~~~v~~~~~~~~--~~~~l~s~~~dg--------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  181 (416)
T 2pm9_A          112 HSSSVKTVKFNAK--QDNVLASGGNNG--------EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF  181 (416)
T ss_dssp             SSSCCCEEEECSS--STTBEEEECSSS--------CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred             CccceEEEEEcCC--CCCEEEEEcCCC--------eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence            3578999999986  256899999999        88888887654110   01111234678899999999998 7899


Q ss_pred             EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCC---eEEEEEccCc-eEEeecc-c
Q 024868           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDG---HLRIMHWPSL-RIILDEP-K  152 (261)
Q Consensus        79 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~---~i~~~d~~~~-~~~~~~~-~  152 (261)
                      ++++.|+.|++||+.+.+...... .......+...+.+++|+|++ .++++++.|+   .|++||++++ .....+. .
T Consensus       182 ~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~  260 (416)
T 2pm9_A          182 ASAGSSNFASIWDLKAKKEVIHLS-YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG  260 (416)
T ss_dssp             EEESSSSCEEEEETTTTEEEEEEC-CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred             EEEcCCCCEEEEECCCCCcceEEe-ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence            999999999999998876422211 111111226789999999997 6899999998   9999999986 4444444 5


Q ss_pred             cCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCC-CcceEEEEEeeCCCcEEEEEE
Q 024868          153 AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG-TKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       153 ~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      |...|.+++|+| ++++|++++.|+.|++||+++++++..+..|.. .|.+++|+|++ ++     +++++.|+.|++||
T Consensus       261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~-----l~s~~~d~~i~iw~  334 (416)
T 2pm9_A          261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDL-----FACASFDNKIEVQT  334 (416)
T ss_dssp             CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTE-----EEECCSSSEEEEEE
T ss_pred             ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCE-----EEEEecCCcEEEEE
Confidence            777999999999 999999999999999999999999999987765 69999999999 55     68999999999999


Q ss_pred             CCCCeEEeeeec-----------------------------------cCcCeeEEEEeeCCCEEeC
Q 024868          231 ISTWNKIGHKRL-----------------------------------LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       231 ~~~~~~~~~~~~-----------------------------------~~~~v~~~~~s~dg~~la~  261 (261)
                      +.+++.......                                   +..++.+++|+|||++||+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~  400 (416)
T 2pm9_A          335 LQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI  400 (416)
T ss_dssp             SCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred             ccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence            987653321111                                   4567779999999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-32  Score=209.26  Aligned_cols=230  Identities=8%  Similarity=0.029  Sum_probs=188.5

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|.+++| |+   ..++++|+.++        .+..||..+...      ...+..|...|.+++|+|++++|++++
T Consensus        17 h~~~v~~~~~-~~---~~~l~s~~~dg--------~v~vw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~   78 (313)
T 3odt_A           17 HDQDVRDVVA-VD---DSKVASVSRDG--------TVRLWSKDDQWL------GTVVYTGQGFLNSVCYDSEKELLLFGG   78 (313)
T ss_dssp             CSSCEEEEEE-EE---TTEEEEEETTS--------EEEEEEESSSEE------EEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCcEEEEe-cC---CCEEEEEEcCC--------cEEEEECCCCEE------EEEeecCCccEEEEEECCCCCEEEEec
Confidence            3679999999 65   55799999999        888888876654      556778899999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccc--eee--------------------------------eeCCCCCCCCCeEEEEEee-CCcEE
Q 024868           83 TNGGCKLFEVYGGATDIN--LLA--------------------------------KKMPPLQDAGPQKCLSFSV-DGSRF  127 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~--~~~--------------------------------~~~~~~~~~~~v~~~~~s~-~~~~l  127 (261)
                      .|+.+++|++........  .+.                                .......+...+.++.|+| +++++
T Consensus        79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             CCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEE
Confidence            999999999876431000  000                                0001123467888999998 89999


Q ss_pred             EEeccCCeEEEEEccCceEEeeccc-cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEe
Q 024868          128 AAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (261)
Q Consensus       128 ~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  206 (261)
                      ++++.|+.|++||.  .+....+.. +...+.+++|+|++. +++++.|+.|++||+++++++..+..|.. .+.+++|+
T Consensus       159 ~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~  234 (313)
T 3odt_A          159 LTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES-FVYCIKLL  234 (313)
T ss_dssp             EEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEC
T ss_pred             EEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc-eEEEEEEe
Confidence            99999999999993  344444444 667899999999998 89999999999999999999999987765 69999999


Q ss_pred             cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      |+++      +++++.|+.|++||+++++.+..+..+...+.+++|+|+|++++
T Consensus       235 ~~~~------l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  282 (313)
T 3odt_A          235 PNGD------IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIV  282 (313)
T ss_dssp             TTSC------EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred             cCCC------EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEE
Confidence            9994      47889999999999999999888888989999999999999764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7e-33  Score=218.26  Aligned_cols=201  Identities=13%  Similarity=0.114  Sum_probs=158.0

Q ss_pred             eeeEEEEEeeCCcceE-EEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            6 TVTCGSWIKRPENVNL-VVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .+.+++|+|+.  ..+ +++|+.++        .|..||..+...      ...+ .|...|.+++|+|||+++++++.+
T Consensus       135 ~~~~v~fSpDg--~~la~as~~~d~--------~i~iwd~~~~~~------~~~~-~~~~~V~~v~fspdg~~l~s~s~~  197 (365)
T 4h5i_A          135 YTKLVYISREG--TVAAIASSKVPA--------IMRIIDPSDLTE------KFEI-ETRGEVKDLHFSTDGKVVAYITGS  197 (365)
T ss_dssp             CEEEEEECTTS--SCEEEEESCSSC--------EEEEEETTTTEE------EEEE-ECSSCCCEEEECTTSSEEEEECSS
T ss_pred             CEEEEEEcCCC--CEEEEEECCCCC--------EEEEeECCCCcE------EEEe-CCCCceEEEEEccCCceEEeccce
Confidence            47889999963  222 34555677        889999888764      3344 377889999999999999998755


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC----eEEEEEccCceE----EeeccccCCc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLRI----ILDEPKAHKS  156 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~~~----~~~~~~~~~~  156 (261)
                      + +++|+..++.....     .....+...+.+++|+|+++++++++.|+    .+++|++.....    ...+..+...
T Consensus       198 ~-~~~~~~~~~~~~~~-----~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  271 (365)
T 4h5i_A          198 S-LEVISTVTGSCIAR-----KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG  271 (365)
T ss_dssp             C-EEEEETTTCCEEEE-----ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC
T ss_pred             e-EEEEEeccCcceee-----eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC
Confidence            4 77777766653211     12234566799999999999999998776    688898876543    2334566678


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      |.+++|+|||++||+++.|+.|+|||+++++++..+...+..+|++++|+|||++     +++++.|++|+|||+...
T Consensus       272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~-----laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY-----VASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE-----EEEEETTSEEEEEECCTT
T ss_pred             eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE-----EEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999999999999999998875434447999999999998     799999999999999643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.9e-32  Score=215.93  Aligned_cols=234  Identities=13%  Similarity=0.086  Sum_probs=188.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|.+++|+|+   ..++++++.++        .+..||..+...    .....+..|...|.+++|+|++++|++++
T Consensus        51 h~~~v~~~~~~~~---~~~l~~~~~dg--------~i~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  115 (372)
T 1k8k_C           51 HNGQVTGVDWAPD---SNRIVTCGTDR--------NAYVWTLKGRTW----KPTLVILRINRAARCVRWAPNEKKFAVGS  115 (372)
T ss_dssp             CSSCEEEEEEETT---TTEEEEEETTS--------CEEEEEEETTEE----EEEEECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcccEEEEeCC---CCEEEEEcCCC--------eEEEEECCCCee----eeeEEeecCCCceeEEEECCCCCEEEEEe
Confidence            3578999999985   56888998888        777777766543    22344577889999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc------------------Cc
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP------------------SL  144 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~------------------~~  144 (261)
                      .|+.+++||+..........   .....+...|.+++|+|++++|++++.|+.|++||++                  .+
T Consensus       116 ~d~~v~i~d~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (372)
T 1k8k_C          116 GSRVISICYFEQENDWWVCK---HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG  192 (372)
T ss_dssp             TTSSEEEEEEETTTTEEEEE---EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT
T ss_pred             CCCEEEEEEecCCCcceeee---eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchh
Confidence            99999999998875311111   1123456889999999999999999999999999953                  56


Q ss_pred             eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (261)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~  224 (261)
                      +.+..+..+...+.+++|+|++++|++++.|+.|++||+++++++..+..+.. ++.+++|+|++++     ++++ .|+
T Consensus       193 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-----l~~~-~d~  265 (372)
T 1k8k_C          193 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL-PLLAVTFITESSL-----VAAG-HDC  265 (372)
T ss_dssp             CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEE-----EEEE-TTS
T ss_pred             hheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCE-----EEEE-eCC
Confidence            66666777778999999999999999999999999999999999999987655 6999999999986     4555 899


Q ss_pred             EEEEEECCC--CeE--E------------------------------------eee-eccCcCeeEEEEe-eCC---CEE
Q 024868          225 LLAVYDIST--WNK--I------------------------------------GHK-RLLRKPASVLSIS-LDG---KYL  259 (261)
Q Consensus       225 ~i~~~d~~~--~~~--~------------------------------------~~~-~~~~~~v~~~~~s-~dg---~~l  259 (261)
                      .|++||+++  ++.  +                                    ..+ ..|...|.+++|. ++|   ++|
T Consensus       266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l  345 (372)
T 1k8k_C          266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF  345 (372)
T ss_dssp             SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred             eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeE
Confidence            999999987  421  0                                    122 3788899999977 566   888


Q ss_pred             eC
Q 024868          260 AM  261 (261)
Q Consensus       260 a~  261 (261)
                      ++
T Consensus       346 ~s  347 (372)
T 1k8k_C          346 CT  347 (372)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-32  Score=214.76  Aligned_cols=223  Identities=12%  Similarity=0.144  Sum_probs=188.6

Q ss_pred             CCceeeEEEEEeeCCcce-EEEEecCCCCCCCCCceEEEEEcC-CCCceecCCeEEeeecC--CCCCceEEEECCCCCeE
Q 024868            3 GGGTVTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSFDP-KTTSVYTSPLVTYVFDE--SEGDPMTIAVNPSGDDF   78 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l   78 (261)
                      ...+|.+++|+|+   .. ++++|+.++        .|..||. .+..       ...+.+  |...|.+++|+| ++.|
T Consensus        55 ~~~~v~~~~~~~~---~~~~l~~~~~dg--------~i~~wd~~~~~~-------~~~~~~~~~~~~v~~l~~~~-~~~l  115 (342)
T 1yfq_A           55 YKHPLLCCNFIDN---TDLQIYVGTVQG--------EILKVDLIGSPS-------FQALTNNEANLGICRICKYG-DDKL  115 (342)
T ss_dssp             CSSCEEEEEEEES---SSEEEEEEETTS--------CEEEECSSSSSS-------EEECBSCCCCSCEEEEEEET-TTEE
T ss_pred             cCCceEEEEECCC---CCcEEEEEcCCC--------eEEEEEeccCCc-------eEeccccCCCCceEEEEeCC-CCEE
Confidence            3578999999995   56 888999998        8888988 7665       345777  999999999999 9999


Q ss_pred             EEEecCCcEEEEEEeC---------CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-ceE--
Q 024868           79 VCSTTNGGCKLFEVYG---------GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRI--  146 (261)
Q Consensus        79 ~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~--  146 (261)
                      ++++.|+.|++||+.+         ...        ...+.+...+.+++|+|++  +++++.|+.|++||+++ +..  
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~  185 (342)
T 1yfq_A          116 IAASWDGLIEVIDPRNYGDGVIAVKNLN--------SNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG  185 (342)
T ss_dssp             EEEETTSEEEEECHHHHTTBCEEEEESC--------SSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC
T ss_pred             EEEcCCCeEEEEcccccccccccccCCe--------eeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccc
Confidence            9999999999999986         332        3344577899999999987  88889999999999987 442  


Q ss_pred             EeeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCC------cEEEEEeecCC--------CceEEEEEecCCCc
Q 024868          147 ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG------VAWTFLTRNSD--------EKIELCRFSKDGTK  211 (261)
Q Consensus       147 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~--------~~v~~~~~~p~~~~  211 (261)
                      ......+...+.+++|+| +++++++++.|+.+++|+++..      +....+..+..        ..|.+++|+|++++
T Consensus       186 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  265 (342)
T 1yfq_A          186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF  265 (342)
T ss_dssp             EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC
T ss_pred             eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCE
Confidence            223345566899999999 9999999999999999999876      77777776542        26999999999998


Q ss_pred             ceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-CcCeeEEEEeeCCCEEeC
Q 024868          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~dg~~la~  261 (261)
                           +++++.||.|++||+++++.+..+..| ...|.+++  |+|++|++
T Consensus       266 -----l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s  309 (342)
T 1yfq_A          266 -----LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCL  309 (342)
T ss_dssp             -----EEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred             -----EEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEE
Confidence                 688999999999999999998888888 89999999  99999874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-34  Score=229.01  Aligned_cols=236  Identities=15%  Similarity=0.121  Sum_probs=182.5

Q ss_pred             CceeeEEEEEe-eCCcceEEEEecCCCCCCCCCceEEEEEcCCC---CceecCCeEEeeecCCCCCceEEEECCCCCeEE
Q 024868            4 GGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKT---TSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (261)
Q Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   79 (261)
                      .++|++++|+| +   ..++++|+.|+        .|..||..+   ... ...  ...+ .|...|.+++|+|++++|+
T Consensus        63 ~~~V~~~~~s~~~---~~~l~s~s~dg--------~v~vwd~~~~~~~~~-~~~--~~~~-~h~~~v~~~~~~~~~~~l~  127 (437)
T 3gre_A           63 PNSITSSAVSPGE---TPYLITGSDQG--------VIKIWNLKEIIVGEV-YSS--SLTY-DCSSTVTQITMIPNFDAFA  127 (437)
T ss_dssp             TSCEEEEEEECSS---SCEEEEEETTS--------EEEEEEHHHHHTTCC-CSC--SEEE-ECSSCEEEEEECTTSSEEE
T ss_pred             CCceEEEEECCCC---CCEEEEecCCc--------eEEEeECcccccCcc-cce--eeec-cCCCCEEEEEEeCCCCEEE
Confidence            58999999999 5   56899999999        888887654   221 011  1122 4899999999999999999


Q ss_pred             EEecCCcEEEEEEe---CCccccceeeeeC---CCCC--CCCCeEEEE--EeeCCcEEEEeccCCeEEEEEccCceEEee
Q 024868           80 CSTTNGGCKLFEVY---GGATDINLLAKKM---PPLQ--DAGPQKCLS--FSVDGSRFAAGGVDGHLRIMHWPSLRIILD  149 (261)
Q Consensus        80 ~~~~dg~i~i~~~~---~~~~~~~~~~~~~---~~~~--~~~~v~~~~--~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~  149 (261)
                      +++.||.|++||+.   .+...........   ....  +...+.++.  +++++++|++++.|+.|++||+++++.+..
T Consensus       128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence            99999999999995   3332111110111   1111  456777777  567899999999999999999999988777


Q ss_pred             ccc--cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec----CCCcceEEEEEeeCCC
Q 024868          150 EPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK----DGTKPFLFCTVQRGDK  223 (261)
Q Consensus       150 ~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~~~~~~~~~~~d  223 (261)
                      +..  |...|.+++|+|++++|++++.|+.|++||+++++++..+...+..+|.+++|+|    ++++     +++++.|
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~-----l~s~~~d  282 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI-----VVGGSSK  282 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE-----EEEESTT
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE-----EEEEcCC
Confidence            766  6779999999999999999999999999999999999888643444799996665    5656     6899999


Q ss_pred             cEEEEEECCCCeEEeeeecc--------------------------CcCeeEEEEeeCCCEEe
Q 024868          224 ALLAVYDISTWNKIGHKRLL--------------------------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~--------------------------~~~v~~~~~s~dg~~la  260 (261)
                      +.|++||+++++.+..+..+                          ...|.+++|+ ++++|+
T Consensus       283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~  344 (437)
T 3gre_A          283 TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL  344 (437)
T ss_dssp             EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred             CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence            99999999999887666543                          3457778888 666665

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-33  Score=225.23  Aligned_cols=190  Identities=10%  Similarity=0.033  Sum_probs=157.1

Q ss_pred             CCCCCceEEEECCCCCeE-EEEecCCcEEEEEEe--CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868           61 ESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (261)
Q Consensus        61 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  137 (261)
                      .|.+.|.+++|+|++++| ++++.||.|++||+.  ++.....+.     ...+...|.+++|+|++++|++++.++.++
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~  174 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-----RFCFSKRPNAISIAEDDTTVIIADKFGDVY  174 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-----EEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-----cccCCCCceEEEEcCCCCEEEEEeCCCcEE
Confidence            456689999999999996 888899999999998  555422211     113457899999999999999999999999


Q ss_pred             EEEccCceEEe----eccccCCceeEEEEcCC---CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC
Q 024868          138 IMHWPSLRIIL----DEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (261)
Q Consensus       138 ~~d~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~  210 (261)
                      +|++.+++...    .+..|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+...+...|.+++|+ +++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~  253 (450)
T 2vdu_B          175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY  253 (450)
T ss_dssp             EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred             EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence            99998776533    45567778999999999   99999999999999999999998887553344579999999 999


Q ss_pred             cceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-------------------------CcCeeEEEEeeCCCEEeC
Q 024868          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------------------------RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------------~~~v~~~~~s~dg~~la~  261 (261)
                      +     +++++.|+.|++||+++++.+..+..+                         ...+.+++|+|++++|++
T Consensus       254 ~-----l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  324 (450)
T 2vdu_B          254 L-----LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF  324 (450)
T ss_dssp             E-----EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred             E-----EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence            8     688999999999999999887666522                         356889999999999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.2e-32  Score=236.04  Aligned_cols=226  Identities=17%  Similarity=0.226  Sum_probs=196.8

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|.+++|+|+   ..++++|+.++        .|..||..++..      ...+.+|.+.|.+++|+|++++|++++
T Consensus        54 ~~~~v~~~~~s~~---~~~l~~~~~dg--------~i~vw~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~  116 (814)
T 3mkq_A           54 TETPVRAGKFIAR---KNWIIVGSDDF--------RIRVFNYNTGEK------VVDFEAHPDYIRSIAVHPTKPYVLSGS  116 (814)
T ss_dssp             CSSCEEEEEEEGG---GTEEEEEETTS--------EEEEEETTTCCE------EEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCCcEEEEEEeCC---CCEEEEEeCCC--------eEEEEECCCCcE------EEEEecCCCCEEEEEEeCCCCEEEEEc
Confidence            4678999999996   66899999999        889999877664      556788999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccccC-CceeEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDM  160 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~  160 (261)
                      .||.|++|++.++.....      ....|...|.+++|+| +++.+++++.||.|++||+.++........++ ..+..+
T Consensus       117 ~dg~i~vw~~~~~~~~~~------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~  190 (814)
T 3mkq_A          117 DDLTVKLWNWENNWALEQ------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV  190 (814)
T ss_dssp             TTSEEEEEEGGGTSEEEE------EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEE
T ss_pred             CCCEEEEEECCCCceEEE------EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEE
Confidence            999999999987633111      1123567899999999 89999999999999999998877665555555 689999


Q ss_pred             EEcC--CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868          161 DFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (261)
Q Consensus       161 ~~s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  238 (261)
                      +|+|  ++.++++++.|+.|++||+.+++++..+..|.. .+.+++|+|++++     +++++.||.|++||+.+++.+.
T Consensus       191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-----l~~~~~dg~v~vwd~~~~~~~~  264 (814)
T 3mkq_A          191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-NVSFAVFHPTLPI-----IISGSEDGTLKIWNSSTYKVEK  264 (814)
T ss_dssp             EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSE-----EEEEETTSCEEEEETTTCSEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCcEEE
Confidence            9999  999999999999999999999999988887655 6999999999997     6889999999999999999988


Q ss_pred             eeeccCcCeeEEEEeeCCC
Q 024868          239 HKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       239 ~~~~~~~~v~~~~~s~dg~  257 (261)
                      .+..+...+.+++|+|+|+
T Consensus       265 ~~~~~~~~v~~~~~~~~~~  283 (814)
T 3mkq_A          265 TLNVGLERSWCIATHPTGR  283 (814)
T ss_dssp             EECCSSSSEEEEEECTTCG
T ss_pred             EeecCCCcEEEEEEccCCC
Confidence            8888889999999999997

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=226.48  Aligned_cols=240  Identities=10%  Similarity=0.124  Sum_probs=179.6

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecC--------------------------------
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS--------------------------------   52 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------------------------   52 (261)
                      ++|++++|+|+.+ ..++++++.++        .|..||.........                                
T Consensus        94 ~~V~~l~~~~~~~-~~~l~s~s~d~--------~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  164 (447)
T 3dw8_B           94 EKINKIRWLPQKN-AAQFLLSTNDK--------TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMV  164 (447)
T ss_dssp             CCCCEEEECCCCS-SSEEEEEECSS--------CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEE
T ss_pred             CceEEEEEcCCCC-cceEEEeCCCC--------eEEEEecccccCCcceecccCccccccCcccccceEeccccchheee
Confidence            7899999999631 25788888888        566666543221000                                


Q ss_pred             -Ce-EEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceee-eeCCCCCCCCCeEEEEEeeCC-cEEE
Q 024868           53 -PL-VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA-KKMPPLQDAGPQKCLSFSVDG-SRFA  128 (261)
Q Consensus        53 -~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~  128 (261)
                       .. ......+|...|.+++|+|++++|+++ .|+.|++||+........... .......|...|.+++|+|++ ++|+
T Consensus       165 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  243 (447)
T 3dw8_B          165 EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV  243 (447)
T ss_dssp             EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred             eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence             00 012246799999999999999999998 799999999984332222111 011233467889999999998 9999


Q ss_pred             EeccCCeEEEEEccCceE----EeeccccCC------------ceeEEEEcCCCCEEEEecCCCcEEEEEccC-CcEEEE
Q 024868          129 AGGVDGHLRIMHWPSLRI----ILDEPKAHK------------SVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTF  191 (261)
Q Consensus       129 ~~~~d~~i~~~d~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~  191 (261)
                      +++.||.|++||+++++.    ...+..+..            .|.+++|+|++++|++++. +.|++||+++ ++++..
T Consensus       244 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~  322 (447)
T 3dw8_B          244 YSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET  322 (447)
T ss_dssp             EEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred             EEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce
Confidence            999999999999998775    445555554            8999999999999999998 9999999997 888887


Q ss_pred             EeecCCC--------------ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee----------------
Q 024868          192 LTRNSDE--------------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR----------------  241 (261)
Q Consensus       192 ~~~~~~~--------------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~----------------  241 (261)
                      +..|...              .+..++|+|++++     +++++.||.|++||+.+++.+. +.                
T Consensus       323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-----l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~  396 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-----VMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRK  396 (447)
T ss_dssp             EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-----EEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCC
T ss_pred             eeccccccccccccccccccccceEEEECCCCCE-----EEEeccCCEEEEEEcCCCccee-eeecccccccccccCCcc
Confidence            7765321              0234899999998     6899999999999999887653 22                


Q ss_pred             -----------------ccCcCeeEEEEeeCCCEEeC
Q 024868          242 -----------------LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       242 -----------------~~~~~v~~~~~s~dg~~la~  261 (261)
                                       .....+..++|+|+|++||+
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~  433 (447)
T 3dw8_B          397 VCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAV  433 (447)
T ss_dssp             EECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEE
T ss_pred             ccccCCcccccccccccccCCceeEEEECCCCCEEEE
Confidence                             12346888999999999984

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-33  Score=222.40  Aligned_cols=236  Identities=14%  Similarity=0.142  Sum_probs=184.5

Q ss_pred             CCceeeEEEEEeeC-CcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC----CCe
Q 024868            3 GGGTVTCGSWIKRP-ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----GDD   77 (261)
Q Consensus         3 ~~~~v~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~   77 (261)
                      ..++|++++|+|.. +...++++++.++        .+..||..+.... ..........|...|.+++|+|+    +++
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~--------~v~vw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   87 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATVGSN--------RVTLYECHSQGEI-RLLQSYVDADADENFYTCAWTYDSNTSHPL   87 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEEETT--------EEEEEEECGGGCE-EEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred             CCCceEEEEEecccCCCCceEEEECCCC--------EEEEEEcCCCcEE-EeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence            46799999999852 2345566666677        6777777654421 11112223347788999999998    668


Q ss_pred             EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeec---ccc
Q 024868           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE---PKA  153 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~  153 (261)
                      |++++.||.|++||+.+++....       ...|...|.+++|+| ++++|++++.||.|++||+++++....+   ..+
T Consensus        88 l~~~~~dg~i~v~d~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  160 (366)
T 3k26_A           88 LAVAGSRGIIRIINPITMQCIKH-------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH  160 (366)
T ss_dssp             EEEEETTCEEEEECTTTCCEEEE-------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred             EEEecCCCEEEEEEchhceEeee-------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence            99999999999999987764211       123678999999999 8999999999999999999998887666   567


Q ss_pred             CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee---------------------------cCCCceEEEEEe
Q 024868          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---------------------------NSDEKIELCRFS  206 (261)
Q Consensus       154 ~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------------------------~~~~~v~~~~~~  206 (261)
                      ...|.+++|+|++++|++++.|+.|++||+++++....+..                           .+...|.+++|+
T Consensus       161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (366)
T 3k26_A          161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL  240 (366)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred             cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence            77999999999999999999999999999987654433221                           134469999998


Q ss_pred             cCCCcceEEEEEeeCCCcEEEEEECCCCeE--------------EeeeeccCcCeeEEEEeeC--CCEEeC
Q 024868          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNK--------------IGHKRLLRKPASVLSISLD--GKYLAM  261 (261)
Q Consensus       207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~--------------~~~~~~~~~~v~~~~~s~d--g~~la~  261 (261)
                        +++     +++++.|+.|++||+++++.              +..+..+...+.+++|+|+  |++|++
T Consensus       241 --~~~-----l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          241 --GDL-----ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             --TTE-----EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred             --CCE-----EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence              566     68899999999999987643              6667778889999999999  999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=230.17  Aligned_cols=208  Identities=11%  Similarity=0.034  Sum_probs=164.1

Q ss_pred             CceeeEEEEEeeC---CcceEEEEecCCCCCCCCCceEEEEEcCCCCcee-----cCCeEEeeecCCCCCceEEEECCCC
Q 024868            4 GGTVTCGSWIKRP---ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-----TSPLVTYVFDESEGDPMTIAVNPSG   75 (261)
Q Consensus         4 ~~~v~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~   75 (261)
                      .+.|.+++|+|+.   ....++|+|+.|+        .|..||.......     ........+.+|...|.+++|++++
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg--------tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~  278 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEG--------TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT  278 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSCEEEEEETTS--------CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS
T ss_pred             CCcEEEEEECCCCCCCCCCceEEEEecCC--------eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC
Confidence            4679999999962   1246899999999        7777777554321     0011123577899999999999864


Q ss_pred             CeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEE--EEeeCC-cEEEEeccCCeEEEEEccCceEEeeccc
Q 024868           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL--SFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (261)
Q Consensus        76 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~  152 (261)
                       .|++|+.||+|++||+.++......      ...|...|.++  .|+|++ ++|++++.|++|++||+++++....+..
T Consensus       279 -~lasgs~DgtV~lWD~~~~~~~~~~------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~  351 (524)
T 2j04_B          279 -TVVCGFKNGFVAEFDLTDPEVPSFY------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS  351 (524)
T ss_dssp             -EEEEEETTSEEEEEETTBCSSCSEE------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred             -eEEEEeCCCEEEEEECCCCCCceEE------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc
Confidence             7999999999999999875431111      12456889999  578888 8999999999999999988765444434


Q ss_pred             cCC--ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868          153 AHK--SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       153 ~~~--~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      +..  .|.+++|+|+++.+++++.|+.|++||++++.++..+.+|.. .|++++|+|+|+.     +++++.|++|++||
T Consensus       352 ~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~-----l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPM-----VLAGSADGSLIITN  425 (524)
T ss_dssp             ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCB-----CEEEETTTEEECCB
T ss_pred             ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCe-----EEEEECCCEEEEEe
Confidence            432  488999999999999999999999999999998888887765 6999999999998     68999999999998


Q ss_pred             CC
Q 024868          231 IS  232 (261)
Q Consensus       231 ~~  232 (261)
                      +.
T Consensus       426 ~~  427 (524)
T 2j04_B          426 AA  427 (524)
T ss_dssp             SC
T ss_pred             ch
Confidence            64

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.5e-32  Score=245.14  Aligned_cols=230  Identities=16%  Similarity=0.183  Sum_probs=198.1

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|++++|+|+   ..++++|+.++        .|..||..+...      ...+.+|.+.|.+++|+|++++|++++
T Consensus       614 h~~~v~~~~~s~~---~~~l~s~~~d~--------~i~vw~~~~~~~------~~~~~~h~~~v~~~~~s~~~~~l~s~~  676 (1249)
T 3sfz_A          614 HTDAVYHACFSQD---GQRIASCGADK--------TLQVFKAETGEK------LLDIKAHEDEVLCCAFSSDDSYIATCS  676 (1249)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEETTS--------CEEEEETTTCCE------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccEEEEEECCC---CCEEEEEeCCC--------eEEEEECCCCCE------EEEeccCCCCEEEEEEecCCCEEEEEe
Confidence            3578999999996   56899999999        888889887764      567889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~  160 (261)
                      .|+.|++||+.+++....       ...|...|.+++|+|  ++.++++++.|+.|++||+.+++....+..|...|.++
T Consensus       677 ~d~~v~vwd~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~  749 (1249)
T 3sfz_A          677 ADKKVKIWDSATGKLVHT-------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC  749 (1249)
T ss_dssp             TTSEEEEEETTTCCEEEE-------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred             CCCeEEEEECCCCceEEE-------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence            999999999988764221       123568899999999  55689999999999999999999888888888899999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe-----------------------------------------------
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-----------------------------------------------  193 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------------------------------------------  193 (261)
                      +|+|+++++++++.|+.|++||+.+++....+.                                               
T Consensus       750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~  829 (1249)
T 3sfz_A          750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS  829 (1249)
T ss_dssp             EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred             EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence            999999999999999999999998776544432                                               


Q ss_pred             -------ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          194 -------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       194 -------~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                             ..+...+.+++|+|+++.     +++++.|+.|++||+.+++.+..+..|...|.+++|+|+|++|++
T Consensus       830 ~~~~~~~~~~~~~v~~~~~sp~~~~-----l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s  899 (1249)
T 3sfz_A          830 GLLAEIHTGHHSTIQYCDFSPYDHL-----AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT  899 (1249)
T ss_dssp             CEEEEEECSSSSCCCEEEECSSTTE-----EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CceeEEcCCCCCceEEEEEcCCCCE-----EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEE
Confidence                   122345888999999998     688999999999999999999888999999999999999998874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.2e-32  Score=208.66  Aligned_cols=233  Identities=13%  Similarity=0.168  Sum_probs=182.5

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      ..+++|+++    +++|+| .|+        .|..||..+++.    .....+.+|...|.+++|+|++++|++|+.||+
T Consensus        28 ~~~l~WS~~----~~lAvg-~D~--------tV~iWd~~tg~~----~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~   90 (318)
T 4ggc_A           28 LNLVDWSSG----NVLAVA-LDN--------SVYLWSASSGDI----LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE   90 (318)
T ss_dssp             CBCEEECTT----SEEEEE-ETT--------EEEEEETTTCCE----EEEEECCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceEEEECCC----CEEEEE-eCC--------EEEEEECCCCCE----EEEEEecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            467999873    477776 477        889999888765    223455678889999999999999999999999


Q ss_pred             EEEEEEeCCccccceee----------------------------------eeCCCCCCCCCeEEEEEeeCCcEEEEecc
Q 024868           87 CKLFEVYGGATDINLLA----------------------------------KKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (261)
                      |++|++.+++.......                                  .......|...+..+.++++++++++++.
T Consensus        91 v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  170 (318)
T 4ggc_A           91 VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN  170 (318)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec
Confidence            99999987754221100                                  00011234577899999999999999999


Q ss_pred             CCeEEEEEccCceEE----eeccccCCceeEEEEcCCCCEE---EEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEE
Q 024868          133 DGHLRIMHWPSLRII----LDEPKAHKSVLDMDFSLDSEFL---ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (261)
Q Consensus       133 d~~i~~~d~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l---~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  205 (261)
                      |+.|++||+++++..    .....+.+.|..+.++|++..+   ++++.++.|++||.............  ..+..+.|
T Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~--~~v~~~~~  248 (318)
T 4ggc_A          171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILW  248 (318)
T ss_dssp             TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS--SCEEEEEE
T ss_pred             CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce--eeeeeeee
Confidence            999999999876532    2334455689999999976533   46678899999999988877665533  35999999


Q ss_pred             ecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +|+++.++   +++++.|+.|++||+++++.+..+.+|...|.+++|+|||++||+
T Consensus       249 ~~~~~~~~---~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S  301 (318)
T 4ggc_A          249 SPHYKELI---SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS  301 (318)
T ss_dssp             ETTTTEEE---EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             cccccceE---EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            99999832   345668999999999999999999999999999999999999874

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-33  Score=237.75  Aligned_cols=233  Identities=12%  Similarity=0.109  Sum_probs=188.1

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~   80 (261)
                      ..++|++++|+|+   ..++++|+.++        .|..||..+...    .....+.+|.+.|.+++|+|+  +++|++
T Consensus         8 H~~~V~~l~~s~d---g~~latg~~dg--------~I~vwd~~~~~~----~~~~~l~~h~~~V~~l~~s~~~~~~~l~s   72 (753)
T 3jro_A            8 HNELIHDAVLDYY---GKRLATCSSDK--------TIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILAS   72 (753)
T ss_dssp             CCCCEEEECCCSS---SCCEEEEETTT--------EEEEEEEETTEE----EEEEEECCCSSCEEEEEECCTTSCSEEEE
T ss_pred             CcceeEEEEECCC---CCeEEEEECCC--------cEEEEecCCCCC----ccceeccCCcCceEEEEecCCCCCCEEEE
Confidence            3689999999996   55889999999        777777653322    225578899999999999988  999999


Q ss_pred             EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCCeEEEEEccCce--EEeeccccCCc
Q 024868           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKS  156 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~  156 (261)
                      ++.||.|++||+.++....     ......|...|.+++|+|+  ++++++++.||.|++||++++.  .......+...
T Consensus        73 ~s~Dg~I~vwd~~~~~~~~-----~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~  147 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRWSQ-----IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (753)
T ss_dssp             EETTSCEEEEEEETTEEEE-----EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred             EeCCCeEEEEECCCCcccc-----cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence            9999999999999875211     1222346789999999999  9999999999999999998763  23344566778


Q ss_pred             eeEEEEcC-------------CCCEEEEecCCCcEEEEEccCC----cEEEEEeecCCCceEEEEEecC---CCcceEEE
Q 024868          157 VLDMDFSL-------------DSEFLATTSTDGSARIWKTEDG----VAWTFLTRNSDEKIELCRFSKD---GTKPFLFC  216 (261)
Q Consensus       157 v~~~~~s~-------------~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~p~---~~~~~~~~  216 (261)
                      |.+++|+|             +++++++++.||.|++||++++    .+...+..|.. +|.+++|+|+   +++     
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~-----  221 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSY-----  221 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEE-----
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCE-----
Confidence            99999999             5899999999999999999987    44555665554 6999999999   777     


Q ss_pred             EEeeCCCcEEEEEECCCCe-----EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          217 TVQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       217 ~~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +++++.||.|++||+++++     .......+...+.+++|+|+|++|++
T Consensus       222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  271 (753)
T 3jro_A          222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  271 (753)
T ss_dssp             EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEE
T ss_pred             EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEE
Confidence            6889999999999998864     22233446788999999999998874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.9e-32  Score=215.31  Aligned_cols=221  Identities=13%  Similarity=0.166  Sum_probs=179.8

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCCCceEEEECCCCCeEEEEecCC
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      +.+++|++    .. +++++.++        .|+.||..++..      ...+. .|...|.+++|+|++++|++++.||
T Consensus        96 ~~~~~~s~----~~-l~~~~~d~--------~v~lw~~~~~~~------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  156 (401)
T 4aez_A           96 LNLLDWSN----LN-VVAVALER--------NVYVWNADSGSV------SALAETDESTYVASVKWSHDGSFLSVGLGNG  156 (401)
T ss_dssp             CBCEEECT----TS-EEEEEETT--------EEEEEETTTCCE------EEEEECCTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEeecC----CC-EEEEECCC--------eEEEeeCCCCcE------eEeeecCCCCCEEEEEECCCCCEEEEECCCC
Confidence            34466654    23 55666788        899999887764      22333 3788999999999999999999999


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-ceEEeeccccCCceeEEEEcC
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~  164 (261)
                      .|++||+.+++....       ...|...|.+++|  +++++++++.|+.|++||++. ......+..|...|.+++|+|
T Consensus       157 ~i~iwd~~~~~~~~~-------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  227 (401)
T 4aez_A          157 LVDIYDVESQTKLRT-------MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS  227 (401)
T ss_dssp             CEEEEETTTCCEEEE-------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             eEEEEECcCCeEEEE-------ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence            999999987764221       1245688999999  467999999999999999984 555566667778999999999


Q ss_pred             CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEee--CCCcEEEEEECCCCeEEeeeec
Q 024868          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~--~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      ++++|++++.|+.|++||+++++++..+..+.. .|.+++|+|++..+    ++++  +.|+.|++||+++++.+..+. 
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l----l~~~~gs~d~~i~i~d~~~~~~~~~~~-  301 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNL----LATGGGTMDKQIHFWNAATGARVNTVD-  301 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTE----EEEECCTTTCEEEEEETTTCCEEEEEE-
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCE----EEEecCCCCCEEEEEECCCCCEEEEEe-
Confidence            999999999999999999999999888876655 69999999998873    3444  379999999999999887664 


Q ss_pred             cCcCeeEEEEeeCCCEEeC
Q 024868          243 LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la~  261 (261)
                      +...+.+++|+|++++|++
T Consensus       302 ~~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          302 AGSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             CSSCEEEEEECSSSSEEEE
T ss_pred             CCCcEEEEEECCCCCeEEE
Confidence            5678999999999999873

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=218.61  Aligned_cols=235  Identities=15%  Similarity=0.114  Sum_probs=185.1

Q ss_pred             CCceeeEEEEEe-eCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEE--e-----eecCCCCCceEEEECC-
Q 024868            3 GGGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT--Y-----VFDESEGDPMTIAVNP-   73 (261)
Q Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~-----~~~~~~~~v~~~~~~~-   73 (261)
                      ..++|+|++|+| +   ..++++|+.++        .|..||..+..........  .     ...+|...|.+++|+| 
T Consensus        42 h~~~v~~~~~s~~~---~~~l~~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  110 (408)
T 4a11_B           42 HGGGINTLDIEPVE---GRYMLSGGSDG--------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH  110 (408)
T ss_dssp             CSSCEEEEEECTTT---CCEEEEEETTS--------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred             cCCcEEEEEEecCC---CCEEEEEcCCC--------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence            468999999998 5   56899999998        7777777665432111100  0     1135899999999999 


Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC---CcEEEEeccCCeEEEEEccCceEEeec
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILDE  150 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~  150 (261)
                      ++++|++++.||.|++||+.++..        ...+.+...+.++.|+|.   +.++++++.++.|++||+++++....+
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  182 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQT--------ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL  182 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEE--------EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCcc--------ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence            788999999999999999988764        222334678899999984   459999999999999999998887777


Q ss_pred             cccCCceeEEEEcCCCC-EEEEecCCCcEEEEEccCCc-EEEEEe--------------ecCCCceEEEEEecCCCcceE
Q 024868          151 PKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGV-AWTFLT--------------RNSDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       151 ~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~--------------~~~~~~v~~~~~~p~~~~~~~  214 (261)
                      ..|...|.+++|+|+++ ++++++.|+.|++||+++++ ++..+.              ..+...|.+++|+|++++   
T Consensus       183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---  259 (408)
T 4a11_B          183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH---  259 (408)
T ss_dssp             CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE---
T ss_pred             cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE---
Confidence            77888999999999998 58899999999999998765 333331              123346999999999998   


Q ss_pred             EEEEeeCCCcEEEEEECCCC-----------------------------------------------eEEeeeeccCcCe
Q 024868          215 FCTVQRGDKALLAVYDISTW-----------------------------------------------NKIGHKRLLRKPA  247 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~~~~-----------------------------------------------~~~~~~~~~~~~v  247 (261)
                        +++++.|+.|++||++++                                               +.+..+..|...|
T Consensus       260 --l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v  337 (408)
T 4a11_B          260 --LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV  337 (408)
T ss_dssp             --EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE
T ss_pred             --EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE
Confidence              678888888999988654                                               3344556688899


Q ss_pred             eEEEEeeCCCEEeC
Q 024868          248 SVLSISLDGKYLAM  261 (261)
Q Consensus       248 ~~~~~s~dg~~la~  261 (261)
                      .+++|+|++++|++
T Consensus       338 ~~~~~s~~~~~l~s  351 (408)
T 4a11_B          338 DCCVFQSNFQELYS  351 (408)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEcCCCCEEEE
Confidence            99999999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-32  Score=218.21  Aligned_cols=232  Identities=13%  Similarity=0.070  Sum_probs=181.7

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCC--CCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK--TTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ++|.+++|+|+.  ..++++|+.++        .|..||..  ++..    ........|...|.+++|+|++++|++++
T Consensus       103 ~~v~~~~~s~d~--~~l~~~~~~dg--------~v~iwd~~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  168 (450)
T 2vdu_B          103 SYIRNLRLTSDE--SRLIACADSDK--------SLLVFDVDKTSKNV----LKLRKRFCFSKRPNAISIAEDDTTVIIAD  168 (450)
T ss_dssp             CCEEEEEECTTS--SEEEEEEGGGT--------EEEEEEECSSSSSC----EEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEEcCCC--CEEEEEECCCC--------eEEEEECcCCCCce----eeeeecccCCCCceEEEEcCCCCEEEEEe
Confidence            369999999963  44458898888        77777766  4443    11222235778999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC---CcEEEEeccCCeEEEEEccCceEEee-ccccCCcee
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVL  158 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~  158 (261)
                      .+|.+++|++.+.......   ......|...|.+++|+|+   +++|++++.|+.|++||+++++.+.. ...|...|.
T Consensus       169 ~~g~v~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~  245 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEKFT---QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS  245 (450)
T ss_dssp             TTSEEEEEETTSCCCSSCC---CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred             CCCcEEEEecCCccccccc---ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence            9999999999876542100   0122335688999999999   99999999999999999998887666 446777999


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec------------------------CCCceEEEEEecCCCcceE
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------------------------SDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------------~~~~v~~~~~~p~~~~~~~  214 (261)
                      +++|+ ++++|++++.|+.|++||+++++++..+..+                        ....+.+++|+|++++   
T Consensus       246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~---  321 (450)
T 2vdu_B          246 SICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF---  321 (450)
T ss_dssp             EEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE---
T ss_pred             EEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE---
Confidence            99999 9999999999999999999999988887632                        1235889999999998   


Q ss_pred             EEEEeeC-CCcEEEEEEC--CCC---eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          215 FCTVQRG-DKALLAVYDI--STW---NKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       215 ~~~~~~~-~d~~i~~~d~--~~~---~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                        +++++ .++.|++||+  .++   +.+..+..+ ..+.+++|+|++.+++
T Consensus       322 --l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~  370 (450)
T 2vdu_B          322 --VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVT  370 (450)
T ss_dssp             --EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEE
T ss_pred             --EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEE
Confidence              44444 8999999999  555   556566666 8899999999765543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-32  Score=214.99  Aligned_cols=228  Identities=10%  Similarity=-0.013  Sum_probs=182.0

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-eEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~   81 (261)
                      ..++|++++|+|+   ..++++|+.++        .|..|+......   ......+..|...|.+++|+|+++ +|+++
T Consensus        10 h~~~v~~~~~s~~---~~~l~~~~~d~--------~v~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~   75 (342)
T 1yfq_A           10 PKDYISDIKIIPS---KSLLLITSWDG--------SLTVYKFDIQAK---NVDLLQSLRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             CSSCEEEEEEEGG---GTEEEEEETTS--------EEEEEEEETTTT---EEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred             CCCcEEEEEEcCC---CCEEEEEcCCC--------eEEEEEeCCCCc---cccceeeeecCCceEEEEECCCCCcEEEEE
Confidence            4578999999995   56889998888        777777655431   011234457899999999999999 99999


Q ss_pred             ecCCcEEEEEE-eCCccccceeeeeCCCCC--CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC---------ceEEee
Q 024868           82 TTNGGCKLFEV-YGGATDINLLAKKMPPLQ--DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---------LRIILD  149 (261)
Q Consensus        82 ~~dg~i~i~~~-~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~  149 (261)
                      +.||.|++||+ .++..        .....  |...|.+++|+| ++++++++.|+.|++||+++         ++.+..
T Consensus        76 ~~dg~i~~wd~~~~~~~--------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  146 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSF--------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             ETTSCEEEECSSSSSSE--------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             cCCCeEEEEEeccCCce--------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence            99999999999 77653        12223  678999999999 99999999999999999987         555443


Q ss_pred             ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccC-CcE-EEEEeecCCCceEEEEEec-CCCcceEEEEEeeCCCcEE
Q 024868          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVA-WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       150 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~-~~~~~~~~~~~v~~~~~~p-~~~~~~~~~~~~~~~d~~i  226 (261)
                      + .+...+.+++|+|++  +++++.|+.|++||+++ ++. .......+...+.+++|+| ++++     +++++.||.+
T Consensus       147 ~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-----l~~~~~dg~i  218 (342)
T 1yfq_A          147 T-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-----YACSSIDGRV  218 (342)
T ss_dssp             S-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE-----EEEEETTSEE
T ss_pred             E-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCE-----EEEEecCCcE
Confidence            3 467789999999987  89999999999999998 553 2333333455799999999 9997     6888899999


Q ss_pred             EEEECCCC------eEEeeeeccCc---------CeeEEEEeeCCCEEeC
Q 024868          227 AVYDISTW------NKIGHKRLLRK---------PASVLSISLDGKYLAM  261 (261)
Q Consensus       227 ~~~d~~~~------~~~~~~~~~~~---------~v~~~~~s~dg~~la~  261 (261)
                      ++||++..      +....+..+..         .+.+++|+|++++|++
T Consensus       219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  268 (342)
T 1yfq_A          219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT  268 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred             EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence            99999876      55556666654         9999999999998874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=238.94  Aligned_cols=218  Identities=7%  Similarity=0.050  Sum_probs=178.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|+|++|+|+   ..++|+|+.++        .|..|+..+...      .. ...|...|.+++|+| +++|++++.
T Consensus        17 ~~~V~~lafspd---g~~lAsgs~Dg--------~I~lw~~~~~~~------~~-~~~~~~~V~~l~fsp-g~~L~S~s~   77 (902)
T 2oaj_A           17 SSKPIAAAFDFT---QNLLAIATVTG--------EVHIYGQQQVEV------VI-KLEDRSAIKEMRFVK-GIYLVVINA   77 (902)
T ss_dssp             SSCEEEEEEETT---TTEEEEEETTS--------EEEEECSTTCEE------EE-ECSSCCCEEEEEEET-TTEEEEEET
T ss_pred             CCCcEEEEECCC---CCEEEEEeCCC--------EEEEEeCCCcEE------EE-EcCCCCCEEEEEEcC-CCEEEEEEC
Confidence            468999999996   56999999999        899998876553      22 234788999999999 889999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-----------eeccc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----------LDEPK  152 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-----------~~~~~  152 (261)
                      |++|++||+.+++...        .+.+...|.+++|+|+++++++|+.||.|++||+++++..           .....
T Consensus        78 D~~v~lWd~~~~~~~~--------~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~  149 (902)
T 2oaj_A           78 KDTVYVLSLYSQKVLT--------TVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA  149 (902)
T ss_dssp             TCEEEEEETTTCSEEE--------EEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS
T ss_pred             cCeEEEEECCCCcEEE--------EEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc
Confidence            9999999998876421        2234578999999999999999999999999999887653           12244


Q ss_pred             cCCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeec-----------------CCCceEEEEEecCCCcceE
Q 024868          153 AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRN-----------------SDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       153 ~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~p~~~~~~~  214 (261)
                      |.+.|.+++|+|+ +..+++++.|+.| +||+++++++..+..+                 +...|.+++|+|+|++   
T Consensus       150 h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~---  225 (902)
T 2oaj_A          150 RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH---  225 (902)
T ss_dssp             CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE---
T ss_pred             CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE---
Confidence            6678999999996 5789999999999 9999999998888654                 1235999999999998   


Q ss_pred             EEEEeeCCCcEEEEEECCCCeEEeeee-----c-------------cCcCeeEEEEee
Q 024868          215 FCTVQRGDKALLAVYDISTWNKIGHKR-----L-------------LRKPASVLSISL  254 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~~~~~~~~~~~-----~-------------~~~~v~~~~~s~  254 (261)
                        +++++.|+.|++||+++++.+....     .             +...|.+++|++
T Consensus       226 --lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~  281 (902)
T 2oaj_A          226 --IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC  281 (902)
T ss_dssp             --EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred             --EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence              7999999999999999988764311     1             234799999965

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.2e-33  Score=223.36  Aligned_cols=223  Identities=11%  Similarity=0.097  Sum_probs=160.2

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC--------CCCeEEEEecCCcEEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--------SGDDFVCSTTNGGCKLF   90 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~i~   90 (261)
                      ..++++|+.|+        .+..||..+...... .....+.+|.+.|.+++|+|        |+++|++++.|++|++|
T Consensus       101 ~~~las~~~d~--------~v~lw~~~~~~~~~~-~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A          101 SLFLACVCQDN--------TVRLIITKNETIITQ-HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             EEEEEEEETTS--------CEEEEEEETTEEEEE-EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             CCEEEEEeCCC--------cEEEEECCCCcccee-eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            56789999998        777777766543111 12235789999999999997        78999999999999999


Q ss_pred             EEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-cEEEEeccCCeEEEEEccCceEEeec-------------------
Q 024868           91 EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE-------------------  150 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~-------------------  150 (261)
                      |+.+....       .....+..++.+++|+|++ ++|++++.|++|++||+++++.....                   
T Consensus       172 d~~~~~~~-------~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          172 RLTDEGPI-------LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             EEETTEEE-------EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             ECCCCcee-------eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            99876542       2234467899999999987 57999999999999999876543211                   


Q ss_pred             ------cccCCceeEEEEc-CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEE------------------EEE
Q 024868          151 ------PKAHKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL------------------CRF  205 (261)
Q Consensus       151 ------~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~------------------~~~  205 (261)
                            ..+...+.++.|+ |+++.+++++.|+.+++||+.+++....+..+.. .+..                  ..|
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  323 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACP  323 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEE
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEE
Confidence                  1344568889986 7999999999999999999988776555543322 1222                  234


Q ss_pred             ecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +|.....+   +++++.||.|++||+.+++.+.....+..+|.+++|+|||++||+
T Consensus       324 ~~~~~~~~---~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~  376 (393)
T 4gq1_A          324 HPRYMDYF---ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAI  376 (393)
T ss_dssp             CSSCTTEE---EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             ccCCCCEE---EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence            44322212   578899999999999999887777788899999999999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.9e-33  Score=216.35  Aligned_cols=230  Identities=8%  Similarity=0.077  Sum_probs=178.7

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecC---CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC---CC
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKS---SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GD   76 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~   76 (261)
                      ...+|++++|+|+.  ..++++|+.   ++        .+..||..+...     ......+|...|.+++|+|+   ++
T Consensus        17 h~~~v~~~~~~p~~--~~l~~~~s~~~~d~--------~v~iw~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~   81 (357)
T 3i2n_A           17 FNYTVFDCKWVPCS--AKFVTMGNFARGTG--------VIQLYEIQHGDL-----KLLREIEKAKPIKCGTFGATSLQQR   81 (357)
T ss_dssp             CSSCEEEEEECTTS--SEEEEEEC--CCCE--------EEEEEEECSSSE-----EEEEEEEESSCEEEEECTTCCTTTC
T ss_pred             CCCceEEEEEcCCC--ceEEEecCccCCCc--------EEEEEeCCCCcc-----cceeeecccCcEEEEEEcCCCCCCc
Confidence            35689999999963  467777765   67        778888776553     12223368899999999998   69


Q ss_pred             eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEE------EeeCCcEEEEeccCCeEEEEEccCce-EEee
Q 024868           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLS------FSVDGSRFAAGGVDGHLRIMHWPSLR-IILD  149 (261)
Q Consensus        77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~  149 (261)
                      +|++++.||.|++||+.+......      ....|...|.++.      |+|++++|++++.|+.|++||+++++ ....
T Consensus        82 ~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A           82 YLATGDFGGNLHIWNLEAPEMPVY------SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCSSCSE------EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred             eEEEecCCCeEEEEeCCCCCccEE------EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence            999999999999999987762111      1124567899995      47899999999999999999998876 4444


Q ss_pred             ccccCC----ceeEEE----EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec---CCCcceEEEEE
Q 024868          150 EPKAHK----SVLDMD----FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK---DGTKPFLFCTV  218 (261)
Q Consensus       150 ~~~~~~----~v~~~~----~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~~~~~~~  218 (261)
                      +..+.+    .+.+++    |+|+++++++++.|+.|++||+++++.... ..+ ...+.+++|+|   ++++     ++
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~-----l~  228 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNI-KNGVCSLEFDRKDISMNK-----LV  228 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EEC-SSCEEEEEESCSSSSCCE-----EE
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCC-CCceEEEEcCCCCCCCCE-----EE
Confidence            433332    688888    789999999999999999999999887554 334 34699999999   8887     68


Q ss_pred             eeCCCcEEEEEECCCCeEEeeee-----ccCcCeeEEEEeeCCC-EEe
Q 024868          219 QRGDKALLAVYDISTWNKIGHKR-----LLRKPASVLSISLDGK-YLA  260 (261)
Q Consensus       219 ~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~s~dg~-~la  260 (261)
                      +++.||.|++||+++++.+..+.     .|...+.+++|+|+++ +|+
T Consensus       229 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  276 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL  276 (357)
T ss_dssp             EEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             EECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence            88999999999998776544443     7889999999999998 565

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4e-32  Score=208.25  Aligned_cols=193  Identities=15%  Similarity=0.153  Sum_probs=156.4

Q ss_pred             eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCe
Q 024868           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGH  135 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~  135 (261)
                      .+.+|.+.|.+++|+|+|++|++++.|++|++||+.......  .   .....|.++|.+++|+|  ++++|++++.|++
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~--~---~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL--I---DTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC--C---EEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE--E---EEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence            467899999999999999999999999999999997542100  0   11234678999999986  4899999999999


Q ss_pred             EEEEEccCce--EEeeccccCCceeEEEEcCC--CCEEEEecCCCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCC
Q 024868          136 LRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG  209 (261)
Q Consensus       136 i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~  209 (261)
                      |++||+++++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..|.. .|.+++|+|++
T Consensus        79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-~v~~~~~~p~~  157 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAPAT  157 (297)
T ss_dssp             EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS-CEEEEEECCCC
T ss_pred             EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC-ccceEeecCCc
Confidence            9999998764  33445567778999999997  88999999999999999987632  344555544 69999999973


Q ss_pred             -------------CcceEEEEEeeCCCcEEEEEECCCCe----EEeeeeccCcCeeEEEEeeCC---CEEeC
Q 024868          210 -------------TKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDG---KYLAM  261 (261)
Q Consensus       210 -------------~~~~~~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~dg---~~la~  261 (261)
                                   ++     +++++.|++|++||+++++    ....+..|...|.+++|+|++   ++||+
T Consensus       158 ~~~~~~~~~~~~~~~-----l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las  224 (297)
T 2pm7_B          158 IEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS  224 (297)
T ss_dssp             ------------CCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             ccccccCCCCCCcce-----EEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence                         45     6899999999999998765    455677899999999999995   67763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-32  Score=221.10  Aligned_cols=237  Identities=15%  Similarity=0.024  Sum_probs=176.0

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|++++|+|.  +..++++|+.|+        .|..||..+..+    ........+...+.+++|+|++++|++|+
T Consensus       163 H~~~V~~l~f~p~--~~~~l~s~s~D~--------~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  228 (435)
T 4e54_B          163 AGGSITGLKFNPL--NTNQFYASSMEG--------TTRLQDFKGNIL----RVFASSDTINIWFCSLDVSASSRMVVTGD  228 (435)
T ss_dssp             SSCCCCEEEECSS--CTTEEEEECSSS--------CEEEEETTSCEE----EEEECCSSCSCCCCCEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEEeCC--CCCEEEEEeCCC--------EEEEeeccCCce----eEEeccCCCCccEEEEEECCCCCEEEEEe
Confidence            3679999999984  356899999999        778888766543    11112223345678999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEe---eccccCCcee
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIIL---DEPKAHKSVL  158 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~v~  158 (261)
                      .||.|++||+.....        .....|...|.+++|+|++. ++++++.|+.|++||+++.+...   ....|...|.
T Consensus       229 ~dg~i~~wd~~~~~~--------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~  300 (435)
T 4e54_B          229 NVGNVILLNMDGKEL--------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN  300 (435)
T ss_dssp             SSSBEEEEESSSCBC--------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEE
T ss_pred             CCCcEeeeccCccee--------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccc
Confidence            999999999875432        22334678999999999876 67889999999999998765432   2245667899


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC-----ceEEEEEecCCCcceEE-------EEEeeCCCcEE
Q 024868          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-----KIELCRFSKDGTKPFLF-------CTVQRGDKALL  226 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~~~~-------~~~~~~~d~~i  226 (261)
                      +++|+|+|++|++++.|+.|++||+.+++....+..+...     .+....|+|++..+.+.       .+..+..++.|
T Consensus       301 ~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i  380 (435)
T 4e54_B          301 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTI  380 (435)
T ss_dssp             ECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred             ceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence            9999999999999999999999999998877776544321     12234566665541100       01233455689


Q ss_pred             EEEECCCCeEEeeee-ccCcCeeEE-EEeeCCCEEeC
Q 024868          227 AVYDISTWNKIGHKR-LLRKPASVL-SISLDGKYLAM  261 (261)
Q Consensus       227 ~~~d~~~~~~~~~~~-~~~~~v~~~-~~s~dg~~la~  261 (261)
                      ++||..+++.+..+. .|...|.++ +|+|||++||+
T Consensus       381 ~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las  417 (435)
T 4e54_B          381 DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS  417 (435)
T ss_dssp             EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred             EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence            999999999876654 566778887 69999999873

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.3e-32  Score=225.46  Aligned_cols=237  Identities=14%  Similarity=0.074  Sum_probs=189.7

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC-ceEEEECC--CCCeEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNP--SGDDFV   79 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~   79 (261)
                      ..+.|.+++|+|+   ..++++++ ++        .+..||..+...  .......+.+|... |.+++|+|  ++++|+
T Consensus        17 ~~~~v~~~~~spd---g~~l~~~~-~~--------~v~v~~~~~~~~--~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~   82 (615)
T 1pgu_A           17 QRNFTTHLSYDPT---TNAIAYPC-GK--------SAFVRCLDDGDS--KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC   82 (615)
T ss_dssp             CTTCCCCCEEETT---TTEEEEEE-TT--------EEEEEECCSSCC--SSCSEEEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred             ccCceeEEEECCC---CCEEEEec-CC--------eEEEEECCCCCC--ccccceEEecCCCceEEEEEECcCCCCCEEE
Confidence            3578999999996   45777776 55        677788776510  00125678899999 99999999  999999


Q ss_pred             EEecCCcEEEEEEeCCccccceeee-eCCCCCCCCCeEEEEEeeCCcEEEEeccC----CeEEEEEccCceEEeeccccC
Q 024868           80 CSTTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEPKAH  154 (261)
Q Consensus        80 ~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~  154 (261)
                      +++.||.|++||+.++......... ......+...|.+++|+|++++|++++.+    +.|++||  .++....+..|.
T Consensus        83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~  160 (615)
T 1pgu_A           83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS  160 (615)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCS
T ss_pred             EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCC
Confidence            9999999999999754110000000 01112356789999999999999999877    6888888  556667777888


Q ss_pred             CceeEEEEcCCCC-EEEEecCCCcEEEEEccCCcEEEEEeecCCC--ceEEEEEecC-CCcceEEEEEeeCCCcEEEEEE
Q 024868          155 KSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDE--KIELCRFSKD-GTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       155 ~~v~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~p~-~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      ..|.+++|+|+++ .+++++.|+.|++||+.+++.+..+..|...  .|.+++|+|+ +++     +++++.|+.|++||
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF-----VITVGSDRKISCFD  235 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE-----EEEEETTCCEEEEE
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCE-----EEEEeCCCeEEEEE
Confidence            8999999999998 7999999999999999999999888866541  5999999999 887     68889999999999


Q ss_pred             CCCCeEEeee-e---ccCcCeeEEEEeeCCCEEeC
Q 024868          231 ISTWNKIGHK-R---LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       231 ~~~~~~~~~~-~---~~~~~v~~~~~s~dg~~la~  261 (261)
                      +++++.+..+ .   .|...+.+++|+ ++++|++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~  269 (615)
T 1pgu_A          236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT  269 (615)
T ss_dssp             TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred             CCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence            9999988777 5   788999999999 9998873

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.8e-32  Score=209.09  Aligned_cols=206  Identities=16%  Similarity=0.194  Sum_probs=162.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC--CCeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~   81 (261)
                      .++|++++|+++. ...++++|+.|+        .|..||..+...    .....+.+|...|.+++|+|+  +.+|+++
T Consensus        57 ~~~V~~v~~~~~~-~~~~l~s~s~D~--------~v~iWd~~~~~~----~~~~~~~~h~~~V~~v~~~p~~~g~~lasg  123 (316)
T 3bg1_A           57 EGPVWQVAWAHPM-YGNILASCSYDR--------KVIIWREENGTW----EKSHEHAGHDSSVNSVCWAPHDYGLILACG  123 (316)
T ss_dssp             SSCEEEEEECCGG-GSSCEEEEETTS--------CEEEECCSSSCC----CEEEEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred             CccEEEEEeCCCC-CCCEEEEEECCC--------EEEEEECCCCcc----eEEEEccCCCCceEEEEECCCCCCcEEEEE
Confidence            5789999998642 256899999999        888888876532    224467889999999999997  7899999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-----------------CcEEEEeccCCeEEEEEccCc
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-----------------GSRFAAGGVDGHLRIMHWPSL  144 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------~~~l~~~~~d~~i~~~d~~~~  144 (261)
                      +.|+.|++||+.......    .......|...+.+++|+|+                 +++|++++.|+.|++||++..
T Consensus       124 s~D~~i~lwd~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~  199 (316)
T 3bg1_A          124 SSDGAISLLTYTGEGQWE----VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED  199 (316)
T ss_dssp             CSSSCEEEEEECSSSCEE----ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred             cCCCCEEEEecCCCCCcc----eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence            999999999998653210    01122345678899999997                 478999999999999999754


Q ss_pred             ---eEEeeccccCCceeEEEEcCCC----CEEEEecCCCcEEEEEccCC---c-EEEEEeecCCCceEEEEEecCCCcce
Q 024868          145 ---RIILDEPKAHKSVLDMDFSLDS----EFLATTSTDGSARIWKTEDG---V-AWTFLTRNSDEKIELCRFSKDGTKPF  213 (261)
Q Consensus       145 ---~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~iwd~~~~---~-~~~~~~~~~~~~v~~~~~~p~~~~~~  213 (261)
                         +....+..|...|.+++|+|++    ++|++++.|+.|++||+++.   + ....+..+ ...|.+++|+|++++  
T Consensus       200 ~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~--  276 (316)
T 3bg1_A          200 GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANI--  276 (316)
T ss_dssp             SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCC--
T ss_pred             CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCE--
Confidence               3455666777899999999986    78999999999999999762   1 12233444 446999999999998  


Q ss_pred             EEEEEeeCCCcEEEEEECC
Q 024868          214 LFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       214 ~~~~~~~~~d~~i~~~d~~  232 (261)
                         +++++.|++|++|+..
T Consensus       277 ---las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          277 ---LAVSGGDNKVTLWKES  292 (316)
T ss_dssp             ---EEEEESSSCEEEEEEC
T ss_pred             ---EEEEcCCCeEEEEEEC
Confidence               7899999999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-32  Score=217.87  Aligned_cols=236  Identities=13%  Similarity=0.092  Sum_probs=169.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCC----------CCCCceEEEEEcCCCCc--eecC-CeEEeeec-CCCCCceE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRAS----------SSPSVLEIFSFDPKTTS--VYTS-PLVTYVFD-ESEGDPMT   68 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~i~~~~~~~~~--~~~~-~~~~~~~~-~~~~~v~~   68 (261)
                      -...|.+++|+|+   +.++|+++.|+..          +-.+.+.-..|.|++..  +... ......+. .|...|.+
T Consensus        14 ~~~~v~sv~~SpD---G~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           14 FEDWKNNLTWARD---GTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CSSSSCCEEECTT---SCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             hhccEEEEEECCC---CCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            4567899999996   6799999988832          00111111222222100  0000 00011222 45778999


Q ss_pred             EEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCC-----CCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA-----GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        69 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~  143 (261)
                      ++|+|+|++||+++.||.+++||...  .    +    ..+.+.     ..+.+++|||||++|++|+.||+|++||+.+
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~~--~----l----~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDNK--M----L----TNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETTE--E----E----EECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCc--e----e----eeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            99999999999999999999999433  1    1    111122     3599999999999999999999999999988


Q ss_pred             ceE-------Eeec----cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE---EEEEeecCCCceEEEEEecCC
Q 024868          144 LRI-------ILDE----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDG  209 (261)
Q Consensus       144 ~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~p~~  209 (261)
                      +..       +..+    .+|...|.+++|+|||  +++++.|+.|++||+.+++.   ..++..++...|.+++|+  |
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g  236 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D  236 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred             CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence            742       2333    4455689999999999  78888899999999988773   345643344469999999  5


Q ss_pred             CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE--eeCCCEEeC
Q 024868          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI--SLDGKYLAM  261 (261)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--s~dg~~la~  261 (261)
                      +.     +++++ +++|++||+.+++......+|...+.+++|  +||++.|++
T Consensus       237 ~~-----LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~  284 (588)
T 2j04_A          237 YK-----VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLM  284 (588)
T ss_dssp             TE-----EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEE
T ss_pred             CE-----EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEE
Confidence            65     46666 689999999988874444479999999999  999988763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-30  Score=211.98  Aligned_cols=230  Identities=13%  Similarity=0.156  Sum_probs=188.1

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC--CCCCeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--PSGDDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~   80 (261)
                      ..++|++++|+|+.    ++++|+.++        .+..||..+...      ...+.+|...|.+++|+  ++++++++
T Consensus       161 h~~~V~~l~~~~~~----~l~s~s~dg--------~i~vwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~~~l~s  222 (464)
T 3v7d_B          161 HDGGVWALKYAHGG----ILVSGSTDR--------TVRVWDIKKGCC------THVFEGHNSTVRCLDIVEYKNIKYIVT  222 (464)
T ss_dssp             CSSCEEEEEECSTT----EEEEEETTS--------CEEEEETTTTEE------EEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred             CCcCEEEEEEcCCC----EEEEEeCCC--------CEEEEECCCCcE------EEEECCCCCccEEEEEecCCCCCEEEE
Confidence            46789999998742    899999999        888889887664      56788899999999998  57889999


Q ss_pred             EecCCcEEEEEEeCCccccceeee----------------eCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc
Q 024868           81 STTNGGCKLFEVYGGATDINLLAK----------------KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (261)
Q Consensus        81 ~~~dg~i~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  144 (261)
                      ++.|+.|++||+.+..........                ......|...+.++  +++++++++++.|+.|++||++++
T Consensus       223 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~  300 (464)
T 3v7d_B          223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM  300 (464)
T ss_dssp             EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999999999876532111000                00112234556554  788999999999999999999999


Q ss_pred             eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (261)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~  224 (261)
                      +.+..+..|...|.+++|+|+++++++++.|+.|++||+++++++..+..|.. .|.+++|+  +++     +++++.||
T Consensus       301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~-----l~s~s~dg  372 (464)
T 3v7d_B          301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKF-----LVSAAADG  372 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSE-----EEEEETTS
T ss_pred             cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCE-----EEEEeCCC
Confidence            98888888888999999999999999999999999999999999999987765 69999997  455     68999999


Q ss_pred             EEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .|++||+++++..... .+...+..++|+|++++|++
T Consensus       373 ~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~  408 (464)
T 3v7d_B          373 SIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVS  408 (464)
T ss_dssp             EEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEE
T ss_pred             cEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEE
Confidence            9999999988766433 35667888999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.6e-30  Score=211.15  Aligned_cols=218  Identities=15%  Similarity=0.239  Sum_probs=181.7

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      .++|+++.+     .++++|+.++        .|..||..+.+.      ...+.+|.+.|.+++|+|++ .|++++.||
T Consensus       124 v~~~~~~~~-----~~l~sgs~dg--------~i~vwd~~~~~~------~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg  183 (464)
T 3v7d_B          124 VITCLQFED-----NYVITGADDK--------MIRVYDSINKKF------LLQLSGHDGGVWALKYAHGG-ILVSGSTDR  183 (464)
T ss_dssp             CEEEEEEET-----TEEEEEETTS--------CEEEEETTTTEE------EEEECCCSSCEEEEEECSTT-EEEEEETTS
T ss_pred             cEEEEEECC-----CEEEEEcCCC--------cEEEEECCCCcE------EEEEeCCCcCEEEEEEcCCC-EEEEEeCCC
Confidence            356666633     4899999999        888899887765      56788999999999999988 899999999


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceE-----------------
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRI-----------------  146 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~-----------------  146 (261)
                      +|++||+.++....       ....|...|.+++|++  +++++++++.|+.|++||++++..                 
T Consensus       184 ~i~vwd~~~~~~~~-------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  256 (464)
T 3v7d_B          184 TVRVWDIKKGCCTH-------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP  256 (464)
T ss_dssp             CEEEEETTTTEEEE-------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred             CEEEEECCCCcEEE-------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence            99999998876421       1123678999999995  778999999999999999987653                 


Q ss_pred             ------EeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEee
Q 024868          147 ------ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       147 ------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                            ......|...+.++  +++++++++++.|+.|++||+++++++..+..|.. .+.+++|+|++++     ++++
T Consensus       257 ~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-----l~sg  328 (464)
T 3v7d_B          257 EENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKR-----CISA  328 (464)
T ss_dssp             GGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTE-----EEEE
T ss_pred             CCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCE-----EEEE
Confidence                  22334455566665  67899999999999999999999999999887765 6999999999998     6899


Q ss_pred             CCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +.|+.|++||+++++.+..+..|...+.+++|+  +++|+
T Consensus       329 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~  366 (464)
T 3v7d_B          329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLV  366 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEE
T ss_pred             eCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEE
Confidence            999999999999999998898999999999997  45654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-32  Score=217.19  Aligned_cols=236  Identities=11%  Similarity=0.081  Sum_probs=182.2

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCC---CCceec----CCeEEeeecC--CCCCceEEE--E
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK---TTSVYT----SPLVTYVFDE--SEGDPMTIA--V   71 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~~~~~----~~~~~~~~~~--~~~~v~~~~--~   71 (261)
                      ..++|++++|+|+   ..++++|+.++        .|..||..   .+....    .......+..  +...+.++.  +
T Consensus       110 h~~~v~~~~~~~~---~~~l~s~s~dg--------~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  178 (437)
T 3gre_A          110 CSSTVTQITMIPN---FDAFAVSSKDG--------QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV  178 (437)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEETTS--------EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE
T ss_pred             CCCCEEEEEEeCC---CCEEEEEeCCC--------EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE
Confidence            3678999999984   56899999999        77777663   222211    1111222223  566788887  6


Q ss_pred             CCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc
Q 024868           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (261)
Q Consensus        72 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  151 (261)
                      ++++++|++++.|+.|++||+.+++....+     ....|...|.+++|+|++++|++++.||.|++||+++++.+..+.
T Consensus       179 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (437)
T 3gre_A          179 NEEKSLLVALTNLSRVIIFDIRTLERLQII-----ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS  253 (437)
T ss_dssp             CSSCEEEEEEETTSEEEEEETTTCCEEEEE-----ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB
T ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCeeeEEE-----ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe
Confidence            789999999999999999999887652221     111256799999999999999999999999999999988876654


Q ss_pred             -ccCCceeEEEEc----CCCCEEEEecCCCcEEEEEccCCcEEEEEeec-------------------------CCCceE
Q 024868          152 -KAHKSVLDMDFS----LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-------------------------SDEKIE  201 (261)
Q Consensus       152 -~~~~~v~~~~~s----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------------~~~~v~  201 (261)
                       .++..|.+++|+    |++++|++++.|+.|++||+++++++..+..+                         +...|+
T Consensus       254 ~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~  333 (437)
T 3gre_A          254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS  333 (437)
T ss_dssp             CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred             cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence             566689999655    56889999999999999999999988888744                         233588


Q ss_pred             EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec-------------------------------------cC
Q 024868          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------------------------------LR  244 (261)
Q Consensus       202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-------------------------------------~~  244 (261)
                      +++|+ ++++     +++++.|+.|++||+++++....+..                                     |.
T Consensus       334 ~l~~~-~~~~-----l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  407 (437)
T 3gre_A          334 TISVS-NDKI-----LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH  407 (437)
T ss_dssp             CEEEE-TTEE-----EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred             EEEEC-CceE-----EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence            89999 6666     68999999999999998876655543                                     67


Q ss_pred             cCeeEEEEeeC--CCEEe
Q 024868          245 KPASVLSISLD--GKYLA  260 (261)
Q Consensus       245 ~~v~~~~~s~d--g~~la  260 (261)
                      ..|.+++|+++  +.+|+
T Consensus       408 ~~I~~i~~~~~~~~~~l~  425 (437)
T 3gre_A          408 DIINSISTCEVDETPLLV  425 (437)
T ss_dssp             CCEEEEEEEESSSSEEEE
T ss_pred             cceeeEeeeccCCceEEE
Confidence            88999999998  66765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-32  Score=213.04  Aligned_cols=218  Identities=12%  Similarity=0.049  Sum_probs=163.6

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~   98 (261)
                      ..++++|+.|+        .|..||..++..      ...+.  ...|.++.|+|+   +++++.|+++++|+.......
T Consensus        48 ~~~l~sg~~Dg--------~v~iwd~~~~~~------~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~  108 (343)
T 3lrv_A           48 KWVCMCRCEDG--------ALHFTQLKDSKT------ITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI  108 (343)
T ss_dssp             EEEEEEEEETT--------EEEEEEESSSSC------EEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred             CCEEEEECCCC--------cEEEEECCCCcE------EEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence            56899999999        888898877654      22222  356778888888   999999999999987643210


Q ss_pred             cceee---eeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeecccc-CCceeEEEEcCCCCEEEEe
Q 024868           99 INLLA---KKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMDFSLDSEFLATT  172 (261)
Q Consensus        99 ~~~~~---~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~  172 (261)
                      .....   .......+..+|.+++|+|  +++++++++.|++|++||+++++.......+ ...+.+++|+|++++|++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            00000   0011223457899999999  9999999999999999999998875544333 3479999999999999999


Q ss_pred             cCCCcEEEEEccCCcEE-EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec---cCcCee
Q 024868          173 STDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---LRKPAS  248 (261)
Q Consensus       173 ~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~v~  248 (261)
                      +.|+.|++||+++++.+ ..+...+..+|.+++|+|++++     ++++++ +.|++||+++++.+..+..   +...+.
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-----l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~  262 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-----MVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTG  262 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-----EEEEES-SBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-----EEEEeC-CeEEEEEcCCCCcceeeccccccccccc
Confidence            99999999999999887 7777623447999999999998     577774 4999999998876543332   223333


Q ss_pred             --EEEEeeCCCEEeC
Q 024868          249 --VLSISLDGKYLAM  261 (261)
Q Consensus       249 --~~~~s~dg~~la~  261 (261)
                        +++|+|+|++|++
T Consensus       263 ~~~~~~~~~g~~l~~  277 (343)
T 3lrv_A          263 TVTYDIDDSGKNMIA  277 (343)
T ss_dssp             CEEEEECTTSSEEEE
T ss_pred             ceEEEECCCCCEEEE
Confidence              6999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.9e-30  Score=202.16  Aligned_cols=201  Identities=19%  Similarity=0.229  Sum_probs=168.9

Q ss_pred             EeeecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      ...|++|.+.|++++|+|+ +++|++|+.|++|++||+...........  .....|...|.+++|+|++++|++++.|+
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~--~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--RALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE--EEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee--EEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            5578999999999999997 68999999999999999987654222211  11234568999999999999999999999


Q ss_pred             eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE
Q 024868          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  214 (261)
                      .|++|+............+...+....+++++++|++++.|+.+++||+............+...+..++|++++...+ 
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  187 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-  187 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE-
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE-
Confidence            9999999988887777777778899999999999999999999999999876655444333445699999999876533 


Q ss_pred             EEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                        +++++.|+.|++||+++++.+..+..|...|.+++|+|+|++|++
T Consensus       188 --~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  232 (340)
T 4aow_A          188 --IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS  232 (340)
T ss_dssp             --EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             --EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence              478889999999999999998888899999999999999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-32  Score=215.58  Aligned_cols=192  Identities=13%  Similarity=0.048  Sum_probs=152.6

Q ss_pred             ecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE
Q 024868           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (261)
Q Consensus        59 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~  138 (261)
                      +..+.+.|.+++|+|++++|++++.|+.|++||+.++...     .......|...|.+++|+|++++|++++.|+.|++
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK-----HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV   81 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE-----ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceE-----EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            4446778999999999999999999999999999976310     01222346789999999999999999999999999


Q ss_pred             EEccCce---EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc---EEEEEeecCCCceEEEEEecCCCcc
Q 024868          139 MHWPSLR---IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV---AWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       139 ~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      ||+.+++   .......|...|.+++|+|++++|++++.|+.|++||+++++   ....+...+...|.+++|+|++++ 
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-  160 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL-  160 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE-
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE-
Confidence            9998876   455667788899999999999999999999999999999877   366776624457999999999998 


Q ss_pred             eEEEEEeeCCCcEEEEEECC------------------CCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          213 FLFCTVQRGDKALLAVYDIS------------------TWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~------------------~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                          +++++.|+.|++||++                  .++.+..+ .|...|.+++|+|+|++||+
T Consensus       161 ----l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~  222 (377)
T 3dwl_C          161 ----LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY  222 (377)
T ss_dssp             ----EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred             ----EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence                6889999999999985                  34455555 78889999999999998874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.5e-32  Score=245.14  Aligned_cols=226  Identities=17%  Similarity=0.168  Sum_probs=195.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..++.+++|+|+   ..++++|+.++        .+..|+..+...      ...+.+|...|.+++|+|++++|++++.
T Consensus       961 ~~~i~~~~~sp~---g~~l~~g~~~g--------~i~i~d~~~~~~------~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1023 (1249)
T 3sfz_A          961 EAQVSCCCLSPH---LEYVAFGDEDG--------AIKIIELPNNRV------FSSGVGHKKAVRHIQFTADGKTLISSSE 1023 (1249)
T ss_dssp             CSCEEEEEECTT---SSEEEEEETTS--------CCEEEETTTTSC------EEECCCCSSCCCCEEECSSSSCEEEECS
T ss_pred             cCcEEEEEEcCC---CCEEEEEcCCC--------CEEEEEcCCCce------eeecccCCCceEEEEECCCCCEEEEEcC
Confidence            457899999996   56899999998        777888776654      4567789999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      ||.|++||+.++..        .....+...+.++.|+|++. +++++.|+.+++||+.+++....+..|...|.+++|+
T Consensus      1024 dg~i~vwd~~~~~~--------~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s 1094 (1249)
T 3sfz_A         1024 DSVIQVWNWQTGDY--------VFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1094 (1249)
T ss_dssp             SSBEEEEETTTTEE--------ECCBCCSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEEC
T ss_pred             CCEEEEEECCCCce--------EEEecCCCcEEEEEEcCCCc-EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEEC
Confidence            99999999988764        23345678999999999775 6677799999999999998877777888899999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee---
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---  240 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---  240 (261)
                      |+++++++++.|+.|++||+.+++++..+..|.. .|++++|+|+|++     +++++.||.|++||+.+++.+..+   
T Consensus      1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~-~v~~~~~s~dg~~-----lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A         1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDGIL-----LATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp             SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS-CEEEEEECSSSSE-----EEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred             CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCC-cEEEEEECCCCCE-----EEEEeCCCEEEEEECCCCceEEEeccc
Confidence            9999999999999999999999998888887765 6999999999998     789999999999999998876544   


Q ss_pred             ------eccCcCeeEEEEeeCCCEEeC
Q 024868          241 ------RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       241 ------~~~~~~v~~~~~s~dg~~la~  261 (261)
                            ..|...|.+++|+|||++|++
T Consensus      1169 ~~~~~~~~~~~~v~~l~fs~dg~~l~s 1195 (1249)
T 3sfz_A         1169 SVEEGTATHGGWVTDVCFSPDSKTLVS 1195 (1249)
T ss_dssp             C-------CCSCCCEEEECTTSSCEEE
T ss_pred             cccccccccCceEEEEEECCCCCEEEE
Confidence                  457788999999999999873

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.2e-30  Score=210.31  Aligned_cols=225  Identities=12%  Similarity=0.078  Sum_probs=167.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC-----CceEEEECCCCCeE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG-----DPMTIAVNPSGDDF   78 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l   78 (261)
                      +.+|++++|+|+   +.++|+++.++        .+..||..+  +      ...+. |..     .+.+++|||||++|
T Consensus        85 ~~~V~~vawSPd---G~~LAs~s~dg--------~V~iwd~~~--~------l~~l~-~~~~~~~~sv~svafSPDG~~L  144 (588)
T 2j04_A           85 VCYPRVCKPSPI---DDWMAVLSNNG--------NVSVFKDNK--M------LTNLD-SKGNLSSRTYHCFEWNPIESSI  144 (588)
T ss_dssp             SCCEEEEEECSS---SSCEEEEETTS--------CEEEEETTE--E------EEECC-CSSCSTTTCEEEEEECSSSSCE
T ss_pred             CCcEEEEEECCC---CCEEEEEeCCC--------cEEEEeCCc--e------eeecc-CCCccccccEEEEEEcCCCCEE
Confidence            578999999996   66899999999        788888543  1      23344 554     59999999999999


Q ss_pred             EEEecCCcEEEEEEeCCccccc---eeee-eCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE---eec-
Q 024868           79 VCSTTNGGCKLFEVYGGATDIN---LLAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDE-  150 (261)
Q Consensus        79 ~~~~~dg~i~i~~~~~~~~~~~---~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~-  150 (261)
                      ++|+.||+|++||+.++.....   .+.. ......|...|.+++|+|||  +++++.|+.+++||+..++..   ..+ 
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence            9999999999999988642110   0111 11123356799999999999  777789999999999877631   233 


Q ss_pred             cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEE--ecCCCcceEEEEEeeCCCcEEEE
Q 024868          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF--SKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       151 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                      ..|...|.+++|+  |+.||+++ ++.|++||+.+++......+|. ..+..++|  +|+++.     +++++++|+ ++
T Consensus       223 ~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~-~~V~~va~~~s~d~~~-----La~a~edG~-kl  292 (588)
T 2j04_A          223 NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSL-ENFHIIPLNHEKESTI-----LLMSNKTSY-KV  292 (588)
T ss_dssp             CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCC-SCCCEEEETTCSSCEE-----EEECSSCEE-EE
T ss_pred             ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCC-ceEEEEEeeeCCCCCE-----EEEEcCCCC-EE
Confidence            2455689999999  68899887 6999999999877744333554 46999999  999987     688899999 99


Q ss_pred             EECCCC-----------------------eEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          229 YDISTW-----------------------NKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       229 ~d~~~~-----------------------~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      |....-                       +.+..+. ....|.+++|||||+.+|+
T Consensus       293 w~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~  347 (588)
T 2j04_A          293 LLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAI  347 (588)
T ss_dssp             EESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEE
T ss_pred             EeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEE
Confidence            987411                       1111111 1235889999999999884

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.8e-30  Score=203.08  Aligned_cols=197  Identities=14%  Similarity=0.182  Sum_probs=166.4

Q ss_pred             CCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec
Q 024868           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (261)
Q Consensus        52 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (261)
                      .......+.+|.+.|.+++|+|++++|++++.||.|++||+.+++....       ...|...|.+++|+|++++|++++
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~s~~   93 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-------LDGHTGTIWSIDVDCFTKYCVTGS   93 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-------ECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-------hhhcCCcEEEEEEcCCCCEEEEEe
Confidence            3455678899999999999999999999999999999999987764211       123568899999999999999999


Q ss_pred             cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-----CcEEEEEccCCc-----------EEEEEeec
Q 024868          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGV-----------AWTFLTRN  195 (261)
Q Consensus       132 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~-----------~~~~~~~~  195 (261)
                      .|+.|++||+.+++...... +...+.+++|+|+++++++++.+     +.|++||+..++           ....+..+
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             TTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             CCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence            99999999999988766555 67789999999999999999998     999999998654           22333322


Q ss_pred             CC-CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC-CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          196 SD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       196 ~~-~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .. ..+.+++|+|++++     +++++.||.|++||+++ ++.+..+..+...+.+++|+|++++|++
T Consensus       173 ~~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  235 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKY-----IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT  235 (369)
T ss_dssp             TTCCCEEEEEECGGGCE-----EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cCccceeEEEEcCCCCE-----EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence            22 15999999999998     68889999999999998 6777788889999999999999998874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=1.6e-30  Score=209.23  Aligned_cols=250  Identities=12%  Similarity=0.089  Sum_probs=184.2

Q ss_pred             CceeeEEEEEeeCCc-------ceEEEEecCCCCCCCCCceEEEEEcCC--------------CCce----ecC-CeEEe
Q 024868            4 GGTVTCGSWIKRPEN-------VNLVVLGKSSRASSSPSVLEIFSFDPK--------------TTSV----YTS-PLVTY   57 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~i~~~~~~--------------~~~~----~~~-~~~~~   57 (261)
                      .-|..|+.|.|+...       ...+++|....  +..|.+.+..++..              ....    ... .....
T Consensus        45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~--~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  122 (430)
T 2xyi_A           45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS--DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE  122 (430)
T ss_dssp             SSCCSCEEECSCCEECTTCSCEEEEEEEECCCS--SSCEEEEEEEEEEC--------------------------CEEEE
T ss_pred             CCCceEEEECcccccccCCCcceEEEEEEEcCC--CCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE
Confidence            357889999997631       25677777654  25677777766521              1100    011 12234


Q ss_pred             eecCCCCCceEEEECCC-CCeEEEEecCCcEEEEEEeCCccccc---eeeeeCCCCCCCCCeEEEEEeeCCc-EEEEecc
Q 024868           58 VFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDIN---LLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGV  132 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~  132 (261)
                      ....|.+.|.+++|+|+ +++|++++.+|.|++|++........   ..........|...+.+++|+|++. +|++++.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            56678999999999997 67899999999999999976311000   0000111224567899999999988 9999999


Q ss_pred             CCeEEEEEccCceE-------EeeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCC---cEEEEEeecCCCceE
Q 024868          133 DGHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIE  201 (261)
Q Consensus       133 d~~i~~~d~~~~~~-------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~  201 (261)
                      ||.|++||+.++..       ......|...|.+++|+| ++.+|++++.|+.|++||++++   +++..+..|.. .|+
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~  281 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA-EVN  281 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS-CEE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC-CeE
Confidence            99999999987321       233446667899999999 7789999999999999999987   56667765544 699


Q ss_pred             EEEEecCCCcceEEEEEeeCCCcEEEEEECCC-CeEEeeeeccCcCeeEEEEeeCCCE-Ee
Q 024868          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKY-LA  260 (261)
Q Consensus       202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~dg~~-la  260 (261)
                      +++|+|+++++    +++++.||.|++||+++ .+.+..+..|...|.+++|+|+++. |+
T Consensus       282 ~i~~~p~~~~~----l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          282 CLSFNPYSEFI----LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             EEEECSSCTTE----EEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             EEEeCCCCCCE----EEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence            99999999863    57889999999999998 4566777889999999999999964 44

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=2e-30  Score=203.55  Aligned_cols=226  Identities=14%  Similarity=0.098  Sum_probs=160.8

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeE-EEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~   81 (261)
                      ...+|+|++|+|+   ..++++|+.++         +..|+......      ...  .+...+..+++.++++.+ +++
T Consensus        18 h~~~V~~v~fs~d---g~~la~g~~~~---------~~iw~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A           18 VSNPVTDYEFNQD---QSCLILSTLKS---------FEIYNVHPVAH------IMS--QEMRHLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             -CCCCCEEEECTT---SSEEEEECSSE---------EEEEEETTEEE------EEE--EECSCCCEEEECTTSSEEEEEC
T ss_pred             CCCceEEEEECCC---CCEEEEEcCCE---------EEEEecCCcce------eee--eecCCeEEEEEcCCCCEEEEEE
Confidence            3578999999996   55888886554         33555544332      111  122357888999988877 467


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC-----------------------------------cE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-----------------------------------SR  126 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------------------------------~~  126 (261)
                      +.|++|++||..+++....        +.+...|.+++|+++.                                   .+
T Consensus        78 ~~d~~v~iWd~~~~~~~~~--------~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~  149 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSR--------IKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGL  149 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEE--------EECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTE
T ss_pred             CCccEEEEEECCCCcEEEE--------EECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccE
Confidence            7789999999987764221        1223455555554432                                   34


Q ss_pred             EEE--eccCCeEEEEEccCce----------------EEeeccccCCceeEEEEcCCCCEEEEecCCCc-EEEEEccCCc
Q 024868          127 FAA--GGVDGHLRIMHWPSLR----------------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGS-ARIWKTEDGV  187 (261)
Q Consensus       127 l~~--~~~d~~i~~~d~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~iwd~~~~~  187 (261)
                      +++  ++.+|.|++||+.+++                ....+..|...|.+++|+|+|++|++++.|++ |++||+++++
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            444  5788999999998765                14556778889999999999999999999998 9999999999


Q ss_pred             EEEEEe-ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe--ee------------------e---cc
Q 024868          188 AWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HK------------------R---LL  243 (261)
Q Consensus       188 ~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~--~~------------------~---~~  243 (261)
                      ++..+. +.+...|.+++|+|+|++     +++++.|++|++||++.+....  .+                  .   ..
T Consensus       230 ~~~~~~~g~h~~~v~~~~~s~~~~~-----l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (355)
T 3vu4_A          230 LVREFRRGLDRADVVDMKWSTDGSK-----LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK  304 (355)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSCE-----EEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred             EEEEEEcCCCCCcEEEEEECCCCCE-----EEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence            999998 324457999999999998     7899999999999997653211  00                  0   01


Q ss_pred             CcCeeEEEEeeCCCEEeC
Q 024868          244 RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       244 ~~~v~~~~~s~dg~~la~  261 (261)
                      ......++|++||++|++
T Consensus       305 ~~~~~~~a~~~d~~~l~~  322 (355)
T 3vu4_A          305 HVRGCKIAWISESSLVVV  322 (355)
T ss_dssp             TCCCCEEEESSSSEEEEE
T ss_pred             CCCceEEEEeCCCCEEEE
Confidence            122367999999988763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=7.1e-30  Score=204.87  Aligned_cols=230  Identities=17%  Similarity=0.198  Sum_probs=169.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec--------------------------------
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--------------------------------   51 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--------------------------------   51 (261)
                      ..+|+|++|+|+   ..++++|+.++        .|..||..+.+...                                
T Consensus       147 ~~~V~sv~fspd---g~~lasgs~Dg--------~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d  215 (420)
T 4gga_A          147 GEYISSVAWIKE---GNYLAVGTSSA--------EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD  215 (420)
T ss_dssp             TCCEEEEEECTT---SSEEEEEETTS--------CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             CCcEEEEEECCC---CCEEEEEECCC--------eEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence            467999999995   56899999999        66666665443210                                


Q ss_pred             ---CCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EE
Q 024868           52 ---SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RF  127 (261)
Q Consensus        52 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l  127 (261)
                         .......+.+|...+..+.|+|+++++++++.|+.+++|+...+.......   .....+...|.+++|+|++. .+
T Consensus       216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~---~~~~~~~~~V~~~~~~p~~~~~l  292 (420)
T 4gga_A          216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---QTFTQHQGAVKAVAWCPWQSNVL  292 (420)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS---EEECCCSSCEEEEEECTTCTTEE
T ss_pred             ecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee---eeecccCCceeeeeeCCCcccEE
Confidence               112234567888999999999999999999999999999998765422221   12234567899999999654 55


Q ss_pred             EE--eccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868          128 AA--GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (261)
Q Consensus       128 ~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  203 (261)
                      ++  |+.|++|++||+.+++....+ ..+..+.++.|+|+++.+++++  .|+.|+|||+.+++++.++.+|.. .|.++
T Consensus       293 a~~~gs~D~~I~iwd~~t~~~~~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~-~V~~l  370 (420)
T 4gga_A          293 ATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSL  370 (420)
T ss_dssp             EEEECTTTCEEEEEETTTTEEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEE
T ss_pred             EEEeecCCCEEEEEeCCccccceee-ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC-CEEEE
Confidence            54  457999999999999886554 4556789999999999888754  789999999999999999998766 69999


Q ss_pred             EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      +|+|||++     +++++.|++|++||+....+......+........+..
T Consensus       371 ~~spdg~~-----l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~~  416 (420)
T 4gga_A          371 TMSPDGAT-----VASAAADETLRLWRCFELDPARRREREKASAAKSSLIH  416 (420)
T ss_dssp             EECTTSSC-----EEEEETTTEEEEECCSCSSCC-----------------
T ss_pred             EEcCCCCE-----EEEEecCCeEEEEECCCCCccchhhhccCCccccccCC
Confidence            99999998     79999999999999987655444444444433334433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.3e-30  Score=201.88  Aligned_cols=195  Identities=15%  Similarity=0.161  Sum_probs=160.5

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccC
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVD  133 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d  133 (261)
                      ...+.+|.+.|.+++|+|++++|++++.||.|++|++.......     ......|...|.+++|+|+  +++|++++.|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL-----IDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE-----EEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCccee-----eeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            34678999999999999999999999999999999998543211     1112246789999999987  9999999999


Q ss_pred             CeEEEEEccCce--EEeeccccCCceeEEEEcCC--CCEEEEecCCCcEEEEEccCCc--EEEEEeecCCCceEEEEEec
Q 024868          134 GHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSK  207 (261)
Q Consensus       134 ~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p  207 (261)
                      |.|++||+.+++  .......+...|.+++|+|+  +++|++++.|+.|++||+++++  ....+..+.. .|.+++|+|
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v~~~~~~~  157 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAP  157 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT-CEEEEEECC
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC-ceEEEEEcC
Confidence            999999999886  55666667789999999999  9999999999999999999873  3334444444 699999999


Q ss_pred             -------------CCCcceEEEEEeeCCCcEEEEEECCCCe----EEeeeeccCcCeeEEEEeeC---CCEEeC
Q 024868          208 -------------DGTKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLD---GKYLAM  261 (261)
Q Consensus       208 -------------~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~d---g~~la~  261 (261)
                                   ++++     +++++.|+.|++||+++++    ....+..|...|.+++|+|+   +++|++
T Consensus       158 ~~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s  226 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  226 (379)
T ss_dssp             CC----------CTTCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             ccccccccccCCCCCCE-----EEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence                         5777     6889999999999998754    34456678899999999999   888863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.7e-29  Score=196.92  Aligned_cols=223  Identities=12%  Similarity=0.217  Sum_probs=173.3

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec---CCeEEeeecCCCCCceEEEECCC--CCe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT---SPLVTYVFDESEGDPMTIAVNPS--GDD   77 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~~~   77 (261)
                      ...+|++++|+|.. +..++++|+.++        .|..||........   .......+..|...|.+++|+|+  +++
T Consensus        56 ~~~~v~~~~~~~~~-d~~~l~s~~~dg--------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  126 (351)
T 3f3f_A           56 HDSSIVAIDWASPE-YGRIIASASYDK--------TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK  126 (351)
T ss_dssp             CSSCEEEEEECCGG-GCSEEEEEETTS--------CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSE
T ss_pred             CCCcEEEEEEcCCC-CCCEEEEEcCCC--------eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcE
Confidence            35789999999842 156899999988        66667665542111   11335567789999999999999  999


Q ss_pred             EEEEecCCcEEEEEEeCCccccceee------eeCCCCCCCCCeEEEEEeeC---CcEEEEeccCCeEEEEEccCceE--
Q 024868           78 FVCSTTNGGCKLFEVYGGATDINLLA------KKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRI--  146 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~--  146 (261)
                      |++++.||.|++||+.+.........      .......+...+.+++|+|+   +.++++++.++.+.+|+...++.  
T Consensus       127 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  206 (351)
T 3f3f_A          127 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV  206 (351)
T ss_dssp             EEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred             EEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence            99999999999999988764322111      01112245678999999997   89999999999998888776654  


Q ss_pred             EeeccccCCceeEEEEcCCC----CEEEEecCCCcEEEEEccCC------------------------------------
Q 024868          147 ILDEPKAHKSVLDMDFSLDS----EFLATTSTDGSARIWKTEDG------------------------------------  186 (261)
Q Consensus       147 ~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~iwd~~~~------------------------------------  186 (261)
                      ...+..|...|.+++|+|++    ++|++++.|+.|++||++++                                    
T Consensus       207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
T 3f3f_A          207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE  286 (351)
T ss_dssp             EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence            45566677899999999998    89999999999999999875                                    


Q ss_pred             ----------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          187 ----------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       187 ----------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                                +.+..+..|.. .|++++|+|++++     +++++.||.|++||+.+++.+..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~-----l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          287 KAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTI-----LSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ----CCSEEEEEEEEECTTSS-CEEEEEECSSSCC-----EEEEETTSCEEEEEECTTSCEEEE
T ss_pred             eeeecccccccEEEEEecccc-cEEEEEEcCCCCE-----EEEecCCCcEEEEecCcCcchhhe
Confidence                      45555555544 6999999999998     789999999999999987655433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=1.5e-29  Score=211.74  Aligned_cols=230  Identities=17%  Similarity=0.183  Sum_probs=186.2

Q ss_pred             Cce-eeEEEEEe--eCCcceEEEEecCCCCCCCCCceEEEEEcCCCCcee--cCCeEEeeecCCCCCceEEEECCCCCeE
Q 024868            4 GGT-VTCGSWIK--RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGDDF   78 (261)
Q Consensus         4 ~~~-v~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l   78 (261)
                      ..+ |++++|+|  +   ..++++|+.++        .+..||..++...  ........+..|...|.+++|+|++++|
T Consensus        63 ~~~~v~~~~~sp~~~---~~~l~s~~~dg--------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  131 (615)
T 1pgu_A           63 GSSVVTTVKFSPIKG---SQYLCSGDESG--------KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL  131 (615)
T ss_dssp             TTSCEEEEEECSSTT---CCEEEEEETTS--------EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CCceEEEEEECcCCC---CCEEEEecCCC--------EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEE
Confidence            466 99999999  6   45899999998        7777777533000  0112245677899999999999999999


Q ss_pred             EEEecC----CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEeecccc
Q 024868           79 VCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        79 ~~~~~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      ++++.+    +.|++||  .+...       .....|...|.+++|+|+++ .+++++.|+.|++||+.+++....+..|
T Consensus       132 ~~~~~~~~~~~~v~~~d--~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~  202 (615)
T 1pgu_A          132 CVVGEGRDNFGVFISWD--SGNSL-------GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH  202 (615)
T ss_dssp             EEEECCSSCSEEEEETT--TCCEE-------EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred             EEeccCCCCccEEEEEE--CCCcc-------eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeeccc
Confidence            999887    6888888  22221       12234678999999999998 7999999999999999999988888888


Q ss_pred             CC---ceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEee---cCCCceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868          154 HK---SVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       154 ~~---~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i  226 (261)
                      ..   .|.+++|+|+ +++|++++.|+.|++||+++++.+..+..   .+...|.+++|+ ++++     +++++.|+.|
T Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-----l~~~~~d~~i  276 (615)
T 1pgu_A          203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQK-----FATVGADATI  276 (615)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSE-----EEEEETTSEE
T ss_pred             CCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCE-----EEEEcCCCcE
Confidence            88   8999999999 99999999999999999999999988832   334479999999 8887     6888999999


Q ss_pred             EEEECCCCeEEeeeecc----CcCeeEEEEeeCCCEEe
Q 024868          227 AVYDISTWNKIGHKRLL----RKPASVLSISLDGKYLA  260 (261)
Q Consensus       227 ~~~d~~~~~~~~~~~~~----~~~v~~~~~s~dg~~la  260 (261)
                      ++||+++++.+..+..+    ...+.++.|+ ++++++
T Consensus       277 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  313 (615)
T 1pgu_A          277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRII  313 (615)
T ss_dssp             EEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEE
T ss_pred             EEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEE
Confidence            99999999988777665    3567788885 776665

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-30  Score=204.22  Aligned_cols=205  Identities=10%  Similarity=0.095  Sum_probs=150.8

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCce--e--cCCeEEeeecCCCCCceEEEECC--CCCeE
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV--Y--TSPLVTYVFDESEGDPMTIAVNP--SGDDF   78 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~l   78 (261)
                      .+|.+++|+|.      +++|+.|+        .+..|+......  .  ..........+|.+.|.+++|+|  +++++
T Consensus        77 ~~v~~~~~~~~------~~s~s~D~--------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  142 (343)
T 3lrv_A           77 PNPRTGGEHPA------IISRGPCN--------RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYF  142 (343)
T ss_dssp             ECCCTTCCCCS------EEEECSTT--------EEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEE
T ss_pred             CCceeeeeCCc------eEEecCCC--------eEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEE
Confidence            34555566652      78888888        777776553221  0  01111223346778999999999  99999


Q ss_pred             EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-eeccc-cCCc
Q 024868           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPK-AHKS  156 (261)
Q Consensus        79 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~  156 (261)
                      ++++.||+|++||+.++....      .....+...+.+++|+|++++|++|+.||.|++||+++++.. ..+.. |..+
T Consensus       143 ~s~s~dg~i~~wd~~~~~~~~------~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~  216 (343)
T 3lrv_A          143 IWADNRGTIGFQSYEDDSQYI------VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK  216 (343)
T ss_dssp             EEEETTCCEEEEESSSSCEEE------EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred             EEEeCCCcEEEEECCCCcEEE------EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence            999999999999998876411      111223457999999999999999999999999999998876 55665 7789


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec--CCCce--EEEEEecCCCcceEEEEEeeCC-CcEEEEEEC
Q 024868          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--SDEKI--ELCRFSKDGTKPFLFCTVQRGD-KALLAVYDI  231 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v--~~~~~~p~~~~~~~~~~~~~~~-d~~i~~~d~  231 (261)
                      |.+++|+|++.+|++++. +.|++||+++++.+..+...  +...+  .+++|+|+|++     +++++. |+.+++|++
T Consensus       217 v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          217 IKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN-----MIAYSNESNSLTIYKF  290 (343)
T ss_dssp             EEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE-----EEEEETTTTEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE-----EEEecCCCCcEEEEEE
Confidence            999999999999999994 59999999988765544321  11123  36999999998     566555 899999998


Q ss_pred             CCCe
Q 024868          232 STWN  235 (261)
Q Consensus       232 ~~~~  235 (261)
                      .+..
T Consensus       291 ~~~~  294 (343)
T 3lrv_A          291 DKKT  294 (343)
T ss_dssp             CTTT
T ss_pred             cccc
Confidence            6543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=7e-29  Score=200.50  Aligned_cols=219  Identities=16%  Similarity=0.168  Sum_probs=181.6

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|.+++|.+     ..+++|+.++        .+..||..+...      ...+.+|...|.+++|  +++.+++++.
T Consensus       199 ~~~v~~~~~~~-----~~l~s~s~dg--------~i~~wd~~~~~~------~~~~~~~~~~v~~~~~--~~~~l~~~~~  257 (445)
T 2ovr_B          199 TSTVRCMHLHE-----KRVVSGSRDA--------TLRVWDIETGQC------LHVLMGHVAAVRCVQY--DGRRVVSGAY  257 (445)
T ss_dssp             SSCEEEEEEET-----TEEEEEETTS--------EEEEEESSSCCE------EEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred             CCcEEEEEecC-----CEEEEEeCCC--------EEEEEECCCCcE------EEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence            56788888854     3688888888        888888877654      5567789999999999  7888999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      ||.|++||+.++.....       ...|...+.++.|  +++++++++.|+.|++||+++++.+..+..+...+.++.++
T Consensus       258 dg~i~iwd~~~~~~~~~-------~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  328 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHT-------LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK  328 (445)
T ss_dssp             TSCEEEEEGGGTEEEEE-------ECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE
T ss_pred             CCEEEEEECCCCcEeEE-------ecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe
Confidence            99999999987654211       1235678999988  78999999999999999999999888887777788888774


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee-
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-  240 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-  240 (261)
                        ++++++++.|+.|++||+++++++..+..+  +...|.+++|+  +++     +++++.||.|++||+++++.+..+ 
T Consensus       329 --~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-----l~s~~~dg~v~iwd~~~~~~~~~~~  399 (445)
T 2ovr_B          329 --DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF-----VITSSDDGTVKLWDLKTGEFIRNLV  399 (445)
T ss_dssp             --TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE-----EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             --CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE-----EEEEeCCCeEEEEECCCCceeeeee
Confidence              679999999999999999999999888752  34469999985  455     688999999999999999988766 


Q ss_pred             ----eccCcCeeEEEEeeCCCEEeC
Q 024868          241 ----RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       241 ----~~~~~~v~~~~~s~dg~~la~  261 (261)
                          ..+...|.+++|+|+|.+||+
T Consensus       400 ~~~~~~~~~~v~~~~~s~~~~~la~  424 (445)
T 2ovr_B          400 TLESGGSGGVVWRIRASNTKLVCAV  424 (445)
T ss_dssp             ECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             ccccCCCCceEEEEEecCCEEEEEE
Confidence                356788999999999998874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=4.1e-29  Score=201.32  Aligned_cols=215  Identities=14%  Similarity=0.192  Sum_probs=180.5

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|+|++|.     ..++++|+.++        .|..||..+...      ...+.+|.+.|.+++|  +++.|++|+.
T Consensus       133 ~~~v~~~~~d-----~~~l~~g~~dg--------~i~iwd~~~~~~------~~~~~~h~~~v~~l~~--~~~~l~sg~~  191 (435)
T 1p22_A          133 SKGVYCLQYD-----DQKIVSGLRDN--------TIKIWDKNTLEC------KRILTGHTGSVLCLQY--DERVIITGSS  191 (435)
T ss_dssp             CCCEEEEECC-----SSEEEEEESSS--------CEEEEESSSCCE------EEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             CCcEEEEEEC-----CCEEEEEeCCC--------eEEEEeCCCCeE------EEEEcCCCCcEEEEEE--CCCEEEEEcC
Confidence            3568888872     45899999999        888888877665      5678899999999999  7889999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE---eeccccCCceeEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLDM  160 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~v~~~  160 (261)
                      ||.|++||+.+++....       ...|...|.+++|+  +..+++++.||.|++||+.+++..   .....|...|.++
T Consensus       192 dg~i~vwd~~~~~~~~~-------~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  262 (435)
T 1p22_A          192 DSTVRVWDVNTGEMLNT-------LIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  262 (435)
T ss_dssp             TSCEEEEESSSCCEEEE-------ECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             CCeEEEEECCCCcEEEE-------EcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence            99999999988764221       12456789999997  458999999999999999877643   4456677789999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      +|  +++++++++.|+.|++||+++++.+..+..|.. .+.++.|+  +++     +++++.||.|++||+++++.+..+
T Consensus       263 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~-----l~~g~~dg~i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRL-----VVSGSSDNTIRLWDIECGACLRVL  332 (435)
T ss_dssp             EE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTE-----EEEEETTSCEEEEETTTCCEEEEE
T ss_pred             Ee--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCE-----EEEEeCCCeEEEEECCCCCEEEEE
Confidence            99  788999999999999999999999999987765 59999884  565     688999999999999999999888


Q ss_pred             eccCcCeeEEEEeeCCCEEe
Q 024868          241 RLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       241 ~~~~~~v~~~~~s~dg~~la  260 (261)
                      ..|...+.+++|  ++++|+
T Consensus       333 ~~h~~~v~~~~~--~~~~l~  350 (435)
T 1p22_A          333 EGHEELVRCIRF--DNKRIV  350 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEE
T ss_pred             eCCcCcEEEEEe--cCCEEE
Confidence            899999999998  677776

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.2e-28  Score=195.71  Aligned_cols=223  Identities=13%  Similarity=0.137  Sum_probs=174.9

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-   82 (261)
                      ...+.+++|+|+.  ..++++++.++        .|..||..+.+.      ...+..+. .+.+++|+|++++|++++ 
T Consensus        31 ~~~~~~~~~s~dg--~~l~~~~~~d~--------~i~v~d~~~~~~------~~~~~~~~-~v~~~~~spdg~~l~~~~~   93 (391)
T 1l0q_A           31 GSNPMGAVISPDG--TKVYVANAHSN--------DVSIIDTATNNV------IATVPAGS-SPQGVAVSPDGKQVYVTNM   93 (391)
T ss_dssp             SSSEEEEEECTTS--SEEEEEEGGGT--------EEEEEETTTTEE------EEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred             CCCcceEEECCCC--CEEEEECCCCC--------eEEEEECCCCeE------EEEEECCC-CccceEECCCCCEEEEEEC
Confidence            4457899999863  44557777888        899999987764      33444443 899999999999886554 


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEE-EEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      .++.|++||+.+++..        ..+.+...+.+++|+|+++.+ ++++.++.|++||+.+++....+. .+..+.+++
T Consensus        94 ~~~~v~v~d~~~~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~  164 (391)
T 1l0q_A           94 ASSTLSVIDTTSNTVA--------GTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIA  164 (391)
T ss_dssp             TTTEEEEEETTTTEEE--------EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEE
T ss_pred             CCCEEEEEECCCCeEE--------EEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-cCCCcceEE
Confidence            5699999999887642        122234578999999999977 677789999999999888765544 345679999


Q ss_pred             EcCCCCEE-EEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC---CCcEEEEEECCCCeEE
Q 024868          162 FSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNKI  237 (261)
Q Consensus       162 ~s~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~---~d~~i~~~d~~~~~~~  237 (261)
                      |+|+++++ ++++.++.|++||+++++.+..+..+  ..+.+++|+|+++++     +.++   .++.|++||+++++.+
T Consensus       165 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l-----~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKA-----YVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEE-----EEEEECSSCCEEEEEETTTTEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--CCccceEECCCCCEE-----EEEecCcCCCcEEEEECCCCeEE
Confidence            99999887 57788899999999999888777633  358999999999983     3333   6899999999999888


Q ss_pred             eeeeccCcCeeEEEEeeCCCEEe
Q 024868          238 GHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       238 ~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ..+..+ ..+.+++|+|||++|+
T Consensus       238 ~~~~~~-~~~~~~~~s~dg~~l~  259 (391)
T 1l0q_A          238 ARIPVG-PDPAGIAVTPDGKKVY  259 (391)
T ss_dssp             EEEECC-SSEEEEEECTTSSEEE
T ss_pred             EEEecC-CCccEEEEccCCCEEE
Confidence            766654 4578999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=4.4e-29  Score=201.15  Aligned_cols=219  Identities=12%  Similarity=0.205  Sum_probs=182.9

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|.+++|.     ..++++|+.++        .|..||..++..      ...+.+|...|.+++|++  +.+++++
T Consensus       172 h~~~v~~l~~~-----~~~l~sg~~dg--------~i~vwd~~~~~~------~~~~~~h~~~v~~l~~~~--~~l~s~s  230 (435)
T 1p22_A          172 HTGSVLCLQYD-----ERVIITGSSDS--------TVRVWDVNTGEM------LNTLIHHCEAVLHLRFNN--GMMVTCS  230 (435)
T ss_dssp             CSSCEEEEECC-----SSEEEEEETTS--------CEEEEESSSCCE------EEEECCCCSCEEEEECCT--TEEEEEE
T ss_pred             CCCcEEEEEEC-----CCEEEEEcCCC--------eEEEEECCCCcE------EEEEcCCCCcEEEEEEcC--CEEEEee
Confidence            35789999992     45899999999        888888877665      566788999999999974  5899999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .||.|++||+.+......    ......|...|.+++|  +++++++++.||.|++||+++++.+..+..|...+.++.|
T Consensus       231 ~dg~i~vwd~~~~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  304 (435)
T 1p22_A          231 KDRSIAVWDMASPTDITL----RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY  304 (435)
T ss_dssp             TTSCEEEEECSSSSCCEE----EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCcEEEEeCCCCCCcee----eeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe
Confidence            999999999987654211    0122345678999988  6889999999999999999999988888888889999998


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe-------
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-------  235 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-------  235 (261)
                      +  ++++++++.|+.|++||+++++++..+..|.. .|.+++|  ++++     +++++.||.|++||+++++       
T Consensus       305 ~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~--~~~~-----l~sg~~dg~i~vwd~~~~~~~~~~~~  374 (435)
T 1p22_A          305 R--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRF--DNKR-----IVSGAYDGKIKVWDLVAALDPRAPAG  374 (435)
T ss_dssp             E--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEC--CSSE-----EEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred             C--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC-cEEEEEe--cCCE-----EEEEeCCCcEEEEECCCCCCcccccc
Confidence            4  78999999999999999999999999987765 6999988  6776     6889999999999997665       


Q ss_pred             --EEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          236 --KIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       236 --~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                        .+..+..|...|.+++|  ++++|+
T Consensus       375 ~~~~~~~~~h~~~v~~l~~--~~~~l~  399 (435)
T 1p22_A          375 TLCLRTLVEHSGRVFRLQF--DEFQIV  399 (435)
T ss_dssp             TTEEEEECCCSSCCCCEEE--CSSCEE
T ss_pred             chheeeccCCCCCeEEEEe--CCCEEE
Confidence              67778889999999999  666665

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=5.4e-29  Score=189.30  Aligned_cols=210  Identities=12%  Similarity=0.085  Sum_probs=144.4

Q ss_pred             CceeeEEEEEeeCCc-ceEEEEecCCC--------------CCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceE
Q 024868            4 GGTVTCGSWIKRPEN-VNLVVLGKSSR--------------ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT   68 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~-~~~~~~g~~~~--------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   68 (261)
                      ..+|..++++|+.+. ...++.++.+.              ..+.+..+++|.+.++...       ...+..|...+..
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~-------~~s~~~~~~~v~~  183 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG-------KENQFLMPPEETI  183 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE-------EEEEEECCCSSCE
T ss_pred             ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCce-------eeeeccCCCceee
Confidence            357888888886211 33445444311              0123455566665544332       3456678888999


Q ss_pred             EEECC---CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEE------------EEeccC
Q 024868           69 IAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF------------AAGGVD  133 (261)
Q Consensus        69 ~~~~~---~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l------------~~~~~d  133 (261)
                      ++|+|   ++..|++++.|++|++||+.+++....+...    ..+...+.+++|+|+|+++            ++|+.|
T Consensus       184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~----~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D  259 (356)
T 2w18_A          184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID----DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV  259 (356)
T ss_dssp             EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC----C---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred             EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC----CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence            99998   7799999999999999999998753332110    0112467888999999987            557789


Q ss_pred             CeEEEEEccCceEEeec-----cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecC
Q 024868          134 GHLRIMHWPSLRIILDE-----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~  208 (261)
                      +++++||..+++.+..+     .+|...+.+..+  ++.++++++.|++|+|||+.+++++.++.+|....+..++|+||
T Consensus       260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD  337 (356)
T 2w18_A          260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT  337 (356)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred             cEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence            99999999988875433     133334444444  48899999999999999999999999998877654556899999


Q ss_pred             CCcceEEEEEeeCCCcEEEEEEC
Q 024868          209 GTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      |++     +++++.|++|+|||+
T Consensus       338 G~~-----LaSGS~D~TIklWd~  355 (356)
T 2w18_A          338 DSH-----LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SSE-----EEEECTTSCEEEEEE
T ss_pred             CCE-----EEEEECCCcEEEecC
Confidence            998     799999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.6e-28  Score=195.53  Aligned_cols=229  Identities=16%  Similarity=0.115  Sum_probs=178.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-   82 (261)
                      .++|.+++|.++   ..++++++.++        .+..||..+...      ...+..|...+.+++|+|+++.+++++ 
T Consensus       169 ~~~v~~~~~~~~---~~~~~s~~~d~--------~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~  231 (433)
T 3bws_A          169 LGFVETISIPEH---NELWVSQMQAN--------AVHVFDLKTLAY------KATVDLTGKWSKILLYDPIRDLVYCSNW  231 (433)
T ss_dssp             CCEEEEEEEGGG---TEEEEEEGGGT--------EEEEEETTTCCE------EEEEECSSSSEEEEEEETTTTEEEEEET
T ss_pred             CCceeEEEEcCC---CEEEEEECCCC--------EEEEEECCCceE------EEEEcCCCCCeeEEEEcCCCCEEEEEec
Confidence            458999999764   67888898888        899999877654      445667888999999999999885544 


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--------cCCeEEEEEccCceEEeeccccC
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--------VDGHLRIMHWPSLRIILDEPKAH  154 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~  154 (261)
                      .++.|++||+.+++.        ...+.....+.+++|+|+++++++++        .|+.|++||+.+++.... ..+.
T Consensus       232 ~~~~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~~  302 (433)
T 3bws_A          232 ISEDISVIDRKTKLE--------IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGPP  302 (433)
T ss_dssp             TTTEEEEEETTTTEE--------EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEEE
T ss_pred             CCCcEEEEECCCCcE--------EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccCC
Confidence            789999999987654        22233345689999999999998887        488999999998876544 3444


Q ss_pred             CceeEEEEcCCCCEE-EEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE----------EeeCCC
Q 024868          155 KSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT----------VQRGDK  223 (261)
Q Consensus       155 ~~v~~~~~s~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~----------~~~~~d  223 (261)
                      ..+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+. + ...+.+++|+|+|+++++...          ++++.|
T Consensus       303 ~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d  380 (433)
T 3bws_A          303 GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-V-FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL  380 (433)
T ss_dssp             ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-C-CCCCCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence            578999999999755 666889999999999998887776 3 335999999999997321100          001126


Q ss_pred             cEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      |.|++||+.+++.+..+.. ...+.+++|+|||++|++
T Consensus       381 g~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~  417 (433)
T 3bws_A          381 GKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI  417 (433)
T ss_dssp             CEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred             eEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence            7999999999998876665 567899999999998863

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-29  Score=219.13  Aligned_cols=188  Identities=9%  Similarity=0.064  Sum_probs=156.0

Q ss_pred             eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  137 (261)
                      ...+|.+.|.+++|+|++++||+|+.||+|++|+......        ...+.+..+|.+++|+| +++|++++.|++|+
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~--------~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~   82 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV--------VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVY   82 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE--------EEECSSCCCEEEEEEET-TTEEEEEETTCEEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE--------EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEE
Confidence            3457899999999999999999999999999999866543        12234567899999999 88999999999999


Q ss_pred             EEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE-----------EEeecCCCceEEEEEe
Q 024868          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-----------FLTRNSDEKIELCRFS  206 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~v~~~~~~  206 (261)
                      +||+++++.+..+ .++..|.+++|+|++++|++++.||.|++||+++++...           .+..| ..+|.+++|+
T Consensus        83 lWd~~~~~~~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h-~~~V~sl~~s  160 (902)
T 2oaj_A           83 VLSLYSQKVLTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR-LSPIVSIQWN  160 (902)
T ss_dssp             EEETTTCSEEEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC-CCCCCEEEEE
T ss_pred             EEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC-CCCeEEEEEc
Confidence            9999998876555 366789999999999999999999999999999887641           11223 3479999999


Q ss_pred             cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc------------------CcCeeEEEEeeCCCEEeC
Q 024868          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------------------RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~------------------~~~v~~~~~s~dg~~la~  261 (261)
                      |++...    +++++.|+.| +||+++++.+..+..+                  ...|.+++|+|||++||+
T Consensus       161 p~~~~~----l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las  228 (902)
T 2oaj_A          161 PRDIGT----VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT  228 (902)
T ss_dssp             TTEEEE----EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred             cCCCCE----EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence            975331    5788999999 9999999887766544                  367999999999999874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-28  Score=189.65  Aligned_cols=198  Identities=15%  Similarity=0.181  Sum_probs=165.4

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC-CCCeEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~   81 (261)
                      ...+|.+++|.     ..++++|+.++        .+..||  ...      ....+..|...+.+++|+| +++.++++
T Consensus       103 ~~~~i~~~~~~-----~~~l~~~~~d~--------~i~~~d--~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A          103 HQGNVCSLSFQ-----DGVVISGSWDK--------TAKVWK--EGS------LVYNLQAHNASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             CSSCEEEEEEE-----TTEEEEEETTS--------EEEEEE--TTE------EEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred             cccCEEEEEec-----CCEEEEEeCCC--------CEEEEc--CCc------EEEecccCCCceeEEEEccCCCCEEEEE
Confidence            35789999993     34888999999        888888  222      2556778999999999988 89999999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      +.|+.+++||.....   .     .....+...+.+++|+|+++ +++++.|+.|++||+++++.+..+..|...|.+++
T Consensus       162 ~~d~~i~i~d~~~~~---~-----~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  232 (313)
T 3odt_A          162 SADKTIKLWQNDKVI---K-----TFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK  232 (313)
T ss_dssp             ETTSCEEEEETTEEE---E-----EECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             ECCCCEEEEecCceE---E-----EEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence            999999999932111   0     11122567899999999998 88999999999999999998888888888999999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  238 (261)
                      |+|++ .+++++.|+.|++||+++++++..+..+.. ++.+++|+|++++      ++++.||.|++||+++++.+.
T Consensus       233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~------~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          233 LLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI-SIWSVDCMSNGDI------IVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             ECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS-CEEEEEECTTSCE------EEEETTSCEEEEESCGGGCCC
T ss_pred             EecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc-eEEEEEEccCCCE------EEEeCCCcEEEEeCCCCceee
Confidence            99999 588999999999999999999999887755 6999999999984      568889999999999877653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=8.8e-29  Score=197.16  Aligned_cols=200  Identities=13%  Similarity=0.116  Sum_probs=163.4

Q ss_pred             EeeecCCCCCceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeee------CCCCCCCCCeEEEEEee-CCcEE
Q 024868           56 TYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKK------MPPLQDAGPQKCLSFSV-DGSRF  127 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~-~~~~l  127 (261)
                      ...+.+|.+.|.+++|+| ++++|++++.||.|++||+.+...........      .....|...|.+++|+| ++++|
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            346778999999999999 99999999999999999999876532221110      01123678999999999 78899


Q ss_pred             EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC---CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEE
Q 024868          128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR  204 (261)
Q Consensus       128 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  204 (261)
                      ++++.|+.|++||+.+++..... .+...+.++.|+|.   +.++++++.|+.|++||+++++.+..+..|.. .|.+++
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~v~~~~  193 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-EILAVS  193 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-CEEEEE
T ss_pred             EEEeCCCeEEEeeCCCCccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-cEEEEE
Confidence            99999999999999988876544 46678999999884   45999999999999999999999888887665 699999


Q ss_pred             EecCCCcceEEEEEeeCCCcEEEEEECCCCe-EEeee---------------eccCcCeeEEEEeeCCCEEeC
Q 024868          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHK---------------RLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       205 ~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~---------------~~~~~~v~~~~~s~dg~~la~  261 (261)
                      |+|+++++    +++++.||.|++||+++++ .+..+               ..+...|.+++|+|+|++|++
T Consensus       194 ~~~~~~~l----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  262 (408)
T 4a11_B          194 WSPRYDYI----LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT  262 (408)
T ss_dssp             ECSSCTTE----EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred             ECCCCCcE----EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence            99999963    4788999999999998765 22222               457788999999999999874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=5.8e-28  Score=186.37  Aligned_cols=211  Identities=18%  Similarity=0.210  Sum_probs=167.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec--------------------------------
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--------------------------------   51 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--------------------------------   51 (261)
                      ...|+|++|+|+   ..++++|+.|+        .|..||..+.+...                                
T Consensus        67 ~~~V~~v~~~~~---~~~l~sgs~Dg--------~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~  135 (318)
T 4ggc_A           67 GEYISSVAWIKE---GNYLAVGTSSA--------EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD  135 (318)
T ss_dssp             TCCEEEEEECTT---SSEEEEEETTS--------EEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             CCeEEEEEECCC---CCEEEEEECCC--------cEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeee
Confidence            467999999995   56899999999        78888876654311                                


Q ss_pred             ---CCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEE-
Q 024868           52 ---SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-  127 (261)
Q Consensus        52 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-  127 (261)
                         .......+.+|...+..+.+++++++|++++.|+.|++||+.+++......   .....+.+.|..+.++|++..+ 
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~  212 (318)
T 4ggc_A          136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---QTFTQHQGAVKAVAWCPWQSNVL  212 (318)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS---EEECCCCSCEEEEEECTTSTTEE
T ss_pred             cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce---eeecccCCceEEEEecCCCCcEE
Confidence               012234566788899999999999999999999999999998765422221   1122345789999999976533 


Q ss_pred             --EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe--cCCCcEEEEEccCCcEEEEEeecCCCceEEE
Q 024868          128 --AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT--STDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (261)
Q Consensus       128 --~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  203 (261)
                        ++++.++.|++||........ ...+...+..+.|+|+++.++++  +.|+.|++||+++++++.++.+|.. .|+++
T Consensus       213 ~~~~~~~~~~i~lwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~-~V~~l  290 (318)
T 4ggc_A          213 ATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS-RVLSL  290 (318)
T ss_dssp             EEEECTTTCEEEEEETTTCCEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS-CEEEE
T ss_pred             EEEecCCCCEEEEEecccccccc-cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC-CEEEE
Confidence              456788999999998877643 44566689999999999887765  4789999999999999999998766 69999


Q ss_pred             EEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      +|+|+|++     +++++.|++|++||+.+..
T Consensus       291 ~~spdg~~-----l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          291 TMSPDGAT-----VASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EECTTSSC-----EEEEETTTEEEEECCSCCC
T ss_pred             EEcCCCCE-----EEEEecCCeEEEEECCCCC
Confidence            99999998     7999999999999997643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=9.3e-28  Score=190.61  Aligned_cols=212  Identities=17%  Similarity=0.188  Sum_probs=169.9

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeE-EEEecCCcEEEEEEeCCcc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGAT   97 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~   97 (261)
                      ..++++++.++        .|..||..+.+.      ...+..| ..+.+++|+|+++++ ++++.++.|++||+.+++.
T Consensus         2 ~~l~vs~~~d~--------~v~v~d~~~~~~------~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~   66 (391)
T 1l0q_A            2 TFAYIANSESD--------NISVIDVTSNKV------TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV   66 (391)
T ss_dssp             EEEEEEETTTT--------EEEEEETTTTEE------EEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             CEEEEEcCCCC--------EEEEEECCCCeE------EEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE
Confidence            35788888888        999999987765      4455555 458999999999987 5666899999999987764


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEE-EEecCC
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTD  175 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d  175 (261)
                      .        ..+.....+.+++|+|++++|+++ ..++.|++||+.+++...... ++..+.+++|+|+++++ ++++.+
T Consensus        67 ~--------~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~  137 (391)
T 1l0q_A           67 I--------ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGD  137 (391)
T ss_dssp             E--------EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTT
T ss_pred             E--------EEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCC
Confidence            2        222234489999999999987554 467999999999888765443 45678999999999977 678889


Q ss_pred             CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d  255 (261)
                      +.|++||+.+++.+..+..+.  .+..++|+|+++++    +++++.++.|++||+++++.+..+. +...+.+++|+|+
T Consensus       138 ~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l----~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~  210 (391)
T 1l0q_A          138 KTVSVINTVTKAVINTVSVGR--SPKGIAVTPDGTKV----YVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPE  210 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTT
T ss_pred             CEEEEEECCCCcEEEEEecCC--CcceEEECCCCCEE----EEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCC
Confidence            999999999999888877543  47999999999973    3677889999999999998776554 4567899999999


Q ss_pred             CCEEeC
Q 024868          256 GKYLAM  261 (261)
Q Consensus       256 g~~la~  261 (261)
                      |++|++
T Consensus       211 g~~l~~  216 (391)
T 1l0q_A          211 GTKAYV  216 (391)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            998763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1e-27  Score=182.29  Aligned_cols=182  Identities=7%  Similarity=-0.007  Sum_probs=129.2

Q ss_pred             CceEEEECCC----CCeEEEEec--------------------CCcEEEEEEeC-CccccceeeeeCCCCCCCCCeEEEE
Q 024868           65 DPMTIAVNPS----GDDFVCSTT--------------------NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLS  119 (261)
Q Consensus        65 ~v~~~~~~~~----~~~l~~~~~--------------------dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~  119 (261)
                      .|..++++||    ++.+++++.                    |+.|++|++.. ++...       ....+...+..++
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~  185 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------NQFLMPPEETILT  185 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE-------EEEECCCSSCEEE
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceee-------eeccCCCceeeEE
Confidence            4677778888    777777653                    66666777633 22111       1112345677888


Q ss_pred             Eee---CCcEEEEeccCCeEEEEEccCceEEeeccccCC---ceeEEEEcCCCCEE------------EEecCCCcEEEE
Q 024868          120 FSV---DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK---SVLDMDFSLDSEFL------------ATTSTDGSARIW  181 (261)
Q Consensus       120 ~s~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l------------~~~~~d~~i~iw  181 (261)
                      |+|   ++.+|++++.|++|++||+++++.+..+..++.   .+.+++|+|+|+++            ++++.|++|++|
T Consensus       186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW  265 (356)
T 2w18_A          186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI  265 (356)
T ss_dssp             EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred             eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence            888   779999999999999999999998877765543   57788999999986            567789999999


Q ss_pred             EccCCcEEEEEe-----ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCee-EEEEeeC
Q 024868          182 KTEDGVAWTFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLD  255 (261)
Q Consensus       182 d~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~s~d  255 (261)
                      |..+++.+..+.     +|.. .+.+..  .++..     +++++.|++|+|||+.+++.+.++..|...+. .++||||
T Consensus       266 d~~tgk~l~v~~~~~p~Gh~~-~~lsg~--~sg~~-----lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD  337 (356)
T 2w18_A          266 NPKTTLSVGVMLYCLPPGQAG-RFLEGD--VKDHC-----AAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT  337 (356)
T ss_dssp             ETTTTEEEEEEEECCCTTCCC-CEEEEE--EETTE-----EEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred             ECCCCEEEEEEEeeccCCCcc-eeEccc--cCCCE-----EEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence            999999877653     2222 233333  33665     68899999999999999999988887776554 6899999


Q ss_pred             CCEEeC
Q 024868          256 GKYLAM  261 (261)
Q Consensus       256 g~~la~  261 (261)
                      |++||+
T Consensus       338 G~~LaS  343 (356)
T 2w18_A          338 DSHLLA  343 (356)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            999973

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.7e-28  Score=195.40  Aligned_cols=230  Identities=13%  Similarity=0.057  Sum_probs=179.6

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+.+++|+|   +..++++++.++        .++.||..+++.... .....+.+|.+.|.+++|+|+++.+++++.|
T Consensus       123 ~~~~~~~~s~---~~~~~~~~~~~~--------~i~~~d~~~g~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          123 FQPKSVRFID---NTRLAIPLLEDE--------GMDVLDINSGQTVRL-SPPEKYKKKLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             SCBCCCEESS---SSEEEEEBTTSS--------SEEEEETTTCCEEEE-CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             CCceEEEEeC---CCeEEEEeCCCC--------eEEEEECCCCeEeee-cCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence            3456788887   366777777777        788889887664110 0001356788999999999999999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      +.|++||+.+++.....       ..+...+.+++|+|+++.+++ ++.++.|++||+++++....+. .+..+.+++|+
T Consensus       191 ~~v~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~  262 (433)
T 3bws_A          191 NAVHVFDLKTLAYKATV-------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-KIGLPRGLLLS  262 (433)
T ss_dssp             TEEEEEETTTCCEEEEE-------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-CCSEEEEEEEC
T ss_pred             CEEEEEECCCceEEEEE-------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-CCCCceEEEEc
Confidence            99999999876542211       134568899999999988754 4579999999999888765544 45579999999


Q ss_pred             CCCCEEEEec--------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          164 LDSEFLATTS--------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       164 ~~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      |+++++++++        .|+.|++||+++++.+..+... . .+.+++|+|+++.+    +++++.++.|++||+++++
T Consensus       263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l----~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-G-NKRHIVSGNTENKI----YVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-E-CEEEEEECSSTTEE----EEEETTTTEEEEEETTTTE
T ss_pred             CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-C-CcceEEECCCCCEE----EEEecCCCEEEEEECCCCc
Confidence            9999998887        4889999999999887766432 2 58899999999873    4667889999999999988


Q ss_pred             EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          236 KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+..+. +...+.+++|+|||++|++
T Consensus       337 ~~~~~~-~~~~~~~~~~s~dg~~l~~  361 (433)
T 3bws_A          337 VQKSIP-VFDKPNTIALSPDGKYLYV  361 (433)
T ss_dssp             EEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred             EEEEec-CCCCCCeEEEcCCCCEEEE
Confidence            876554 6678899999999998763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=2.1e-27  Score=191.88  Aligned_cols=216  Identities=14%  Similarity=0.243  Sum_probs=180.3

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|.+++|++     .++++|+.++        .|..||..+...      ...+.+|...|.+++|+  ++.+++++
T Consensus       158 h~~~v~~~~~~~-----~~l~s~~~dg--------~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~--~~~l~s~s  216 (445)
T 2ovr_B          158 HTGGVWSSQMRD-----NIIISGSTDR--------TLKVWNAETGEC------IHTLYGHTSTVRCMHLH--EKRVVSGS  216 (445)
T ss_dssp             CSSCEEEEEEET-----TEEEEEETTS--------CEEEEETTTTEE------EEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             CCCCEEEEEecC-----CEEEEEeCCC--------eEEEEECCcCcE------EEEECCCCCcEEEEEec--CCEEEEEe
Confidence            357889999973     3889999999        888888877664      56678899999999995  56799999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .||.|++||+.+++....       ...+...+.+++|  +++++++++.|+.|++||+++++.+..+..|...+.++.|
T Consensus       217 ~dg~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          217 RDATLRVWDIETGQCLHV-------LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             TTSEEEEEESSSCCEEEE-------EECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEE-------EcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence            999999999988764221       1235678999988  7889999999999999999999988888888889999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                        +++++++++.|+.|++||+++++++..+..+.. .+.++.+  ++++     +++++.||.|++||+++++.+..+..
T Consensus       288 --~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~--~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          288 --DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMEL--KDNI-----LVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             --CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-CEEEEEE--ETTE-----EEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             --CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc-cEEEEEE--eCCE-----EEEEeCCCeEEEEECCCCcEEEEEcc
Confidence              789999999999999999999999999887755 5777766  4566     68899999999999999998877765


Q ss_pred             ---cCcCeeEEEEeeCCCEEe
Q 024868          243 ---LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ---~~~~v~~~~~s~dg~~la  260 (261)
                         +...|.+++|+  +++|+
T Consensus       358 ~~~~~~~v~~~~~~--~~~l~  376 (445)
T 2ovr_B          358 PNKHQSAVTCLQFN--KNFVI  376 (445)
T ss_dssp             TTSCSSCEEEEEEC--SSEEE
T ss_pred             CCCCCCCEEEEEEC--CCEEE
Confidence               67889999985  46665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-28  Score=210.40  Aligned_cols=194  Identities=15%  Similarity=0.161  Sum_probs=158.3

Q ss_pred             eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC--CcEEEEeccCC
Q 024868           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDG  134 (261)
Q Consensus        57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~  134 (261)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+.+.....     ......|..+|.+++|+|+  +++|++++.||
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~-----~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL-----IDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEE-----EEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcc-----ceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence            3578999999999999999999999999999999998543211     1122346789999999998  99999999999


Q ss_pred             eEEEEEccCce--EEeeccccCCceeEEEEcCC--CCEEEEecCCCcEEEEEccCCc--EEEEEeecCCCceEEEEEec-
Q 024868          135 HLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSK-  207 (261)
Q Consensus       135 ~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p-  207 (261)
                      .|++||+.+++  .......|...|.+++|+|+  ++++++++.||.|++||++++.  ....+..+. ..|.+++|+| 
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~-~~v~~l~~~p~  156 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA-IGVNSASWAPA  156 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS-SCEEEEEECCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC-CceEEEEecCc
Confidence            99999999886  55666677789999999999  9999999999999999998773  333444444 4699999999 


Q ss_pred             ------------CCCcceEEEEEeeCCCcEEEEEECCCC----eEEeeeeccCcCeeEEEEeeC---CCEEeC
Q 024868          208 ------------DGTKPFLFCTVQRGDKALLAVYDISTW----NKIGHKRLLRKPASVLSISLD---GKYLAM  261 (261)
Q Consensus       208 ------------~~~~~~~~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~s~d---g~~la~  261 (261)
                                  +++.     +++++.||.|++||++++    .....+..|...|.+++|+|+   +++|++
T Consensus       157 ~~~~~~~~~~~~d~~~-----l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s  224 (753)
T 3jro_A          157 TIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  224 (753)
T ss_dssp             C---------CGGGCC-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             ccccccccccCCCCCE-----EEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence                        4777     688999999999999876    445566788899999999999   888763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=2.2e-27  Score=186.48  Aligned_cols=199  Identities=15%  Similarity=0.132  Sum_probs=154.6

Q ss_pred             EeeecCCCCCceEEEECCC---CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc
Q 024868           56 TYVFDESEGDPMTIAVNPS---GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (261)
                      ...+.+|.+.|.+++|+|+   |++|++++.||.|++||+.+......     .....|...|.+++|+|++++|++++.
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-----KAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-----EEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-----EEeccccCCEEEEEECcCCCEEEEEcC
Confidence            4568899999999999999   69999999999999999987332110     111235689999999999999999999


Q ss_pred             CCeEEEEEccCceEEeeccccCCceeEEEE--cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-------------
Q 024868          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDF--SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-------------  197 (261)
Q Consensus       133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------  197 (261)
                      ||.|++||+++++... ...|...|.+++|  +|++++|++++.|+.|++||+++++++..+..+..             
T Consensus       107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV  185 (368)
T ss_dssp             TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred             CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence            9999999999888754 5667789999999  89999999999999999999998887766654321             


Q ss_pred             ---------------------------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC---eEEeeeeccCc--
Q 024868          198 ---------------------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRK--  245 (261)
Q Consensus       198 ---------------------------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~~--  245 (261)
                                                 .....+++.++.... ...+++++.|+.|++||++..   +.+..+..+..  
T Consensus       186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNK-PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSC-EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCC-CCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence                                       123344444433320 011578889999999999887   33445555554  


Q ss_pred             ----------CeeEEEEeeCCCEEeC
Q 024868          246 ----------PASVLSISLDGKYLAM  261 (261)
Q Consensus       246 ----------~v~~~~~s~dg~~la~  261 (261)
                                .+.+++|+|++++|++
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~~~l~s  290 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVHGTLAT  290 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTTCCEEE
T ss_pred             ccccccccccceEEEEEecCCCEEEE
Confidence                      6999999999998874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.7e-27  Score=189.36  Aligned_cols=208  Identities=9%  Similarity=-0.011  Sum_probs=144.9

Q ss_pred             CceeeEEEEEeeC-----CcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-e
Q 024868            4 GGTVTCGSWIKRP-----ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-D   77 (261)
Q Consensus         4 ~~~v~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~   77 (261)
                      .++|.+++|+|..     .+..++|+|+.|+        .+..||..+...      ...+..|...+.+++|+|++. +
T Consensus       136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~--------tv~~Wd~~~~~~------~~~~~~~~~~v~~v~~~p~~~~~  201 (393)
T 4gq1_A          136 HNFVNDIDIADVYSADNRLAEQVIASVGDDC--------TLIIWRLTDEGP------ILAGYPLSSPGISVQFRPSNPNQ  201 (393)
T ss_dssp             SSCEEEEEEEEEECTTCSEEEEEEEEEETTS--------EEEEEEEETTEE------EEEEEECSSCEEEEEEETTEEEE
T ss_pred             CCceEEEEEccccccccCCCCCEEEEEECCC--------eEEEEECCCCce------eeeecCCCCCcEEEEECCCCCce
Confidence            5789999999832     2367999999999        888888765543      445667889999999999874 7


Q ss_pred             EEEEecCCcEEEEEEeCCccccceeee------------------eCCCCCCCCCeEEEEEe-eCCcEEEEeccCCeEEE
Q 024868           78 FVCSTTNGGCKLFEVYGGATDINLLAK------------------KMPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRI  138 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~~  138 (261)
                      |++++.|++|++||+.+++........                  ......+...+.++.|+ ||++.|++++.|+++++
T Consensus       202 l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~v  281 (393)
T 4gq1_A          202 LIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLR  281 (393)
T ss_dssp             EEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEE
T ss_pred             EEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEE
Confidence            999999999999999876542211100                  01112345678899987 79999999999999999


Q ss_pred             EEccCceEEeeccccCCcee------------------EEEEcC--CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC
Q 024868          139 MHWPSLRIILDEPKAHKSVL------------------DMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE  198 (261)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~v~------------------~~~~s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  198 (261)
                      ||+..++....+..+...+.                  ...|+|  ++.++++++.|+.|++||+.++++......+.. 
T Consensus       282 wd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-  360 (393)
T 4gq1_A          282 WNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-  360 (393)
T ss_dssp             EEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-
T ss_pred             EECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-
Confidence            99987655433332222222                  233433  445677889999999999999998888777655 


Q ss_pred             ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       199 ~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      +|++++|+|||++     +++++++| +.+|.+.
T Consensus       361 ~V~svafspdG~~-----LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          361 PIVDFCWHQDGSH-----LAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CEEEEEECTTSSE-----EEEEESSE-EEEEEEG
T ss_pred             cEEEEEEcCCCCE-----EEEEeCCC-eEEEEEe
Confidence            6999999999998     67777665 6666653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=2.9e-27  Score=185.61  Aligned_cols=187  Identities=13%  Similarity=0.091  Sum_probs=143.7

Q ss_pred             eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEE-EEeccCCeE
Q 024868           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHL  136 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i  136 (261)
                      ....|...|.+++|+|||++|++|+.++ +++|++........   .      +...+..+++.++++.+ ++++.|++|
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS---Q------EMRHLSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE---E------ECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee---e------ecCCeEEEEEcCCCCEEEEEECCccEE
Confidence            4578999999999999999999988776 88999876543111   0      11246778888888777 567788999


Q ss_pred             EEEEccCceEEeeccccCCceeEEEEcCCC-----------------------------------CEEEE--ecCCCcEE
Q 024868          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDS-----------------------------------EFLAT--TSTDGSAR  179 (261)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-----------------------------------~~l~~--~~~d~~i~  179 (261)
                      ++||..+++.+..+. +...|.++.|+++.                                   .++++  ++.||.|+
T Consensus        84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~  162 (355)
T 3vu4_A           84 HIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIH  162 (355)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEE
T ss_pred             EEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEE
Confidence            999999988766543 55678888887653                                   23443  57889999


Q ss_pred             EEEccCCc---------------E-EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE-EEEEECCCCeEEeeee-
Q 024868          180 IWKTEDGV---------------A-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNKIGHKR-  241 (261)
Q Consensus       180 iwd~~~~~---------------~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~-i~~~d~~~~~~~~~~~-  241 (261)
                      +||+++++               + +..+..|.. +|++++|+|+|++     +++++.|++ |++||+++++.+..+. 
T Consensus       163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~-----l~s~s~d~~~v~iwd~~~~~~~~~~~~  236 (355)
T 3vu4_A          163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDM-----VATCSQDGTIIRVFKTEDGVLVREFRR  236 (355)
T ss_dssp             EEECCC------------------CCEEECCCSS-CEEEEEECTTSSE-----EEEEETTCSEEEEEETTTCCEEEEEEC
T ss_pred             EEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCE-----EEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence            99998765               1 566776655 6999999999998     799999998 9999999999988887 


Q ss_pred             c-cCcCeeEEEEeeCCCEEeC
Q 024868          242 L-LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       242 ~-~~~~v~~~~~s~dg~~la~  261 (261)
                      + |...|.+++|+|||++||+
T Consensus       237 g~h~~~v~~~~~s~~~~~l~s  257 (355)
T 3vu4_A          237 GLDRADVVDMKWSTDGSKLAV  257 (355)
T ss_dssp             TTCCSCEEEEEECTTSCEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEE
Confidence            4 8899999999999999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2e-26  Score=184.36  Aligned_cols=221  Identities=10%  Similarity=0.032  Sum_probs=164.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~   82 (261)
                      ..+|.+++|+|+   ...+++++.++.     .-.|+.||..+++.       ..+..|.+.+.+++|+|||++|+ +++
T Consensus       178 ~~~v~~~~~Spd---g~~la~~s~~~~-----~~~i~~~d~~tg~~-------~~l~~~~~~~~~~~~spdg~~la~~~~  242 (415)
T 2hqs_A          178 PQPLMSPAWSPD---GSKLAYVTFESG-----RSALVIQTLANGAV-------RQVASFPRHNGAPAFSPDGSKLAFALS  242 (415)
T ss_dssp             SSCEEEEEECTT---SSEEEEEECTTS-----SCEEEEEETTTCCE-------EEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CCcceeeEEcCC---CCEEEEEEecCC-----CcEEEEEECCCCcE-------EEeecCCCcccCEEEcCCCCEEEEEEe
Confidence            468999999996   446666654421     12789999887663       34667788899999999999888 555


Q ss_pred             cCCc--EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC--eEEEEEccCceEEeeccccCCce
Q 024868           83 TNGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG--HLRIMHWPSLRIILDEPKAHKSV  157 (261)
Q Consensus        83 ~dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v  157 (261)
                      .++.  |++||+.++..        .....+...+.+++|+|||++|++++. ++  .|++||+.+++. ..+..+...+
T Consensus       243 ~~g~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~  313 (415)
T 2hqs_A          243 KTGSLNLYVMDLASGQI--------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQN  313 (415)
T ss_dssp             TTSSCEEEEEETTTCCE--------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEE
T ss_pred             cCCCceEEEEECCCCCE--------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcc
Confidence            5554  88999887653        122234567899999999999888775 44  688889887764 3344455678


Q ss_pred             eEEEEcCCCCEEEEecCC---CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc---EEEEEEC
Q 024868          158 LDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA---LLAVYDI  231 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~---~i~~~d~  231 (261)
                      .+++|+|||++|++++.+   ..|++||+.+++.. .+..+.  .+.+++|+|+|++     ++.++.++   .|++||+
T Consensus       314 ~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~-----l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTM-----VIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSE-----EEEEEEETTEEEEEEEET
T ss_pred             cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCE-----EEEEEcCCCccEEEEEEC
Confidence            899999999999987754   58999999988874 444442  5899999999997     34444444   8999999


Q ss_pred             CCCeEEeeeeccCcCeeEEEEeeCCC
Q 024868          232 STWNKIGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~~s~dg~  257 (261)
                      ..+ ....+..+.+.|.+++|+|.-.
T Consensus       386 ~g~-~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          386 DGR-FKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             TSC-CEEECCCSSSEEEEEEECCCCC
T ss_pred             CCC-cEEEeeCCCCCCcCCccccccc
Confidence            754 4456778889999999999643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2.8e-26  Score=183.53  Aligned_cols=199  Identities=21%  Similarity=0.163  Sum_probs=151.4

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC---cEEEEEEeCCccccceeeeeCCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG---GCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  114 (261)
                      .|+.||.++..       ...+..|...+.+++|+|||++|++++.++   .|++||+.+++..        ....+...
T Consensus       160 ~i~i~d~~g~~-------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--------~l~~~~~~  224 (415)
T 2hqs_A          160 ELRVSDYDGYN-------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------QVASFPRH  224 (415)
T ss_dssp             EEEEEETTSCS-------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--------EEECCSSC
T ss_pred             eEEEEcCCCCC-------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE--------EeecCCCc
Confidence            78888886544       234667888999999999999999998875   8999999887641        11223567


Q ss_pred             eEEEEEeeCCcEEE-EeccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CC--cEEEEEccCCcE
Q 024868          115 QKCLSFSVDGSRFA-AGGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVA  188 (261)
Q Consensus       115 v~~~~~s~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~~  188 (261)
                      +.+++|+|||++|+ +++.++  .|++||+.+++. ..+..+...+.+++|+|||++|++++. ++  .|++||+.+++.
T Consensus       225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence            89999999999888 555555  499999988776 455666678999999999999988776 44  677889888764


Q ss_pred             EEEEeecCCCceEEEEEecCCCcceEEEEEeeC-C--CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-D--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~-~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      . .+..+ ...+.+++|+|+|+++     +.++ .  +..|++||+.+++.. .+..+. .+.+++|+|||++|++
T Consensus       304 ~-~l~~~-~~~~~~~~~spdG~~l-----~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~  370 (415)
T 2hqs_A          304 Q-RITWE-GSQNQDADVSSDGKFM-----VMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIY  370 (415)
T ss_dssp             E-ECCCS-SSEEEEEEECTTSSEE-----EEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEE
T ss_pred             E-EEecC-CCcccCeEECCCCCEE-----EEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEE
Confidence            3 34333 3358899999999983     3322 2  468999999988764 344443 8899999999998863

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=4.5e-26  Score=173.71  Aligned_cols=227  Identities=16%  Similarity=0.113  Sum_probs=163.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCC-CceecCCeEEeeecCC-CCCceEEEECCCCCeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~   81 (261)
                      .+.|.+++|+|+   ..++++++ ++        .++.||..+ ...      ......+ ...+.+++|+|++++|+++
T Consensus        41 ~~~v~~~~~spd---g~~l~~~~-~~--------~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~spdg~~l~~~  102 (297)
T 2ojh_A           41 PELFEAPNWSPD---GKYLLLNS-EG--------LLYRLSLAGDPSP------EKVDTGFATICNNDHGISPDGALYAIS  102 (297)
T ss_dssp             SSCCEEEEECTT---SSEEEEEE-TT--------EEEEEESSSCCSC------EECCCTTCCCBCSCCEECTTSSEEEEE
T ss_pred             CcceEeeEECCC---CCEEEEEc-CC--------eEEEEeCCCCCCc------eEeccccccccccceEECCCCCEEEEE
Confidence            467899999996   44666654 56        888999877 553      3334444 4678999999999999998


Q ss_pred             e--cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEE-EeccCCeEEEEEccC-ceEEeeccccCCce
Q 024868           82 T--TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPS-LRIILDEPKAHKSV  157 (261)
Q Consensus        82 ~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v  157 (261)
                      +  .++...+|.++.....       ...+.....+..++|+|++++|+ ++..++.+.+|+++. ......+..+...+
T Consensus       103 ~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  175 (297)
T 2ojh_A          103 DKVEFGKSAIYLLPSTGGT-------PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN  175 (297)
T ss_dssp             ECTTTSSCEEEEEETTCCC-------CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred             EeCCCCcceEEEEECCCCc-------eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence            8  3456777776543221       11222334588999999999887 667889899998642 22334555666789


Q ss_pred             eEEEEcCCCCEEEEec-CCCcEEEEEcc-CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----------Cc
Q 024868          158 LDMDFSLDSEFLATTS-TDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----------KA  224 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----------d~  224 (261)
                      .+++|+|++++|+.++ .++.+++|++. .+.....+..+.. .+..++|+|+|+++     +.++.           ++
T Consensus       176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l-----~~~~~~~~~~~~~~~~~~  249 (297)
T 2ojh_A          176 DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY-GDWFPHPSPSGDKV-----VFVSYDADVFDHPRDLDV  249 (297)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE-EEEEEEECTTSSEE-----EEEEEETTCCSCCSSEEE
T ss_pred             ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc-ccCCeEECCCCCEE-----EEEEcCCCCCcccccCce
Confidence            9999999999887665 58899999987 5556666665443 58899999999983     33322           36


Q ss_pred             EEEEEECCCCeEE--eeeeccCcCeeEEEEeeCCCEEeC
Q 024868          225 LLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       225 ~i~~~d~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .|++||+.+++..  .....+...+..++|+|||++|++
T Consensus       250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  288 (297)
T 2ojh_A          250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAY  288 (297)
T ss_dssp             EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEE
T ss_pred             EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEE
Confidence            7999999887653  333466778999999999998873

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=2.3e-25  Score=190.56  Aligned_cols=234  Identities=12%  Similarity=0.063  Sum_probs=166.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-------------------
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-------------------   63 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------------------   63 (261)
                      ..+|.+++|+|+   ...+++++. ++.   .....|+.||..++..      ...+..+.                   
T Consensus        36 ~~~~~~~~~Spd---G~~la~~~~~d~~---~~~~~i~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (741)
T 2ecf_A           36 GPTLMKPKVAPD---GSRVTFLRGKDSD---RNQLDLWSYDIGSGQT------RLLVDSKVVLPGTETLSDEEKARRERQ  103 (741)
T ss_dssp             CCCCEEEEECTT---SSEEEEEECCSSC---TTEEEEEEEETTTCCE------EEEECGGGTC-----------------
T ss_pred             CCCCCCceEecC---CCEEEEEeccCCC---CcccEEEEEECCCCce------eEccchhhcccccccccchhhhhhhhh
Confidence            456899999996   456676655 431   1123789999887664      22232222                   


Q ss_pred             -----CCceEEEECCCCCeEEEEecCCcEEEEEEeCC---ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868           64 -----GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (261)
Q Consensus        64 -----~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  135 (261)
                           ..+.+++|+|||++|++++. +.|++||+.++   ..        .....+...+..++|||||++|++++ ++.
T Consensus       104 ~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--------~~l~~~~~~~~~~~~SPDG~~la~~~-~~~  173 (741)
T 2ecf_A          104 RIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV--------RQLTHGEGFATDAKLSPKGGFVSFIR-GRN  173 (741)
T ss_dssp             ---CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC--------CBCCCSSSCEEEEEECTTSSEEEEEE-TTE
T ss_pred             hhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE--------EEcccCCcccccccCCCCCCEEEEEe-CCc
Confidence                 23789999999999998876 88999999887   32        22223456799999999999999985 568


Q ss_pred             EEEEEccCceEEeeccccCCc----------------eeEEEEcCCCCEEEEecCCC-----------------------
Q 024868          136 LRIMHWPSLRIILDEPKAHKS----------------VLDMDFSLDSEFLATTSTDG-----------------------  176 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~~d~-----------------------  176 (261)
                      |++||+.+++.......+...                +..++|||||++|++++.|+                       
T Consensus       174 i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          174 LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence            999999887765433333222                47899999999999987665                       


Q ss_pred             ----------cEEEEEccC-CcEEEEEee-cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC
Q 024868          177 ----------SARIWKTED-GVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (261)
Q Consensus       177 ----------~i~iwd~~~-~~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  244 (261)
                                .|++||+.+ ++....... .+...+..++| |||+++++...-....+..|++||+.+++.......+.
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~  332 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS  332 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC
Confidence                      788999988 876554332 23346899999 99998432111123457899999999988765554443


Q ss_pred             c----CeeEEEEeeCCCEEe
Q 024868          245 K----PASVLSISLDGKYLA  260 (261)
Q Consensus       245 ~----~v~~~~~s~dg~~la  260 (261)
                      .    .+..++|+|||++++
T Consensus       333 ~~~~~~~~~~~~spdg~~~~  352 (741)
T 2ecf_A          333 PTWVPLHNSLRFLDDGSILW  352 (741)
T ss_dssp             SSCCCCCSCCEECTTSCEEE
T ss_pred             CCcCCcCCceEECCCCeEEE
Confidence            2    456899999999665

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=4.8e-24  Score=166.83  Aligned_cols=223  Identities=13%  Similarity=0.115  Sum_probs=167.4

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC---------CceEEEECCCCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---------DPMTIAVNPSGD   76 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~   76 (261)
                      .+..++|+|+.  ..+++++..++        .++.||..+.+.      ...+..+..         .+.+++|+|+++
T Consensus        90 ~~~~~~~s~dg--~~l~v~~~~~~--------~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  153 (353)
T 3vgz_A           90 KPFGATINNTT--QTLWFGNTVNS--------AVTAIDAKTGEV------KGRLVLDDRKRTEEVRPLQPRELVADDATN  153 (353)
T ss_dssp             CCCSEEEETTT--TEEEEEETTTT--------EEEEEETTTCCE------EEEEESCCCCCCSSCCCCEEEEEEEETTTT
T ss_pred             CcceEEECCCC--CEEEEEecCCC--------EEEEEeCCCCee------EEEEecCCCccccccCCCCCceEEECCCCC
Confidence            35567787752  44666666667        899999987764      223333221         268899999999


Q ss_pred             eEEEEe--cCCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc-
Q 024868           77 DFVCST--TNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-  152 (261)
Q Consensus        77 ~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-  152 (261)
                      ++++++  .++.|.+||..+++...        .+. ....+.+++|+|+++++++++.++.+.+||..+++....... 
T Consensus       154 ~l~~~~~~~~~~i~~~d~~~~~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~  225 (353)
T 3vgz_A          154 TVYISGIGKESVIWVVDGGNIKLKT--------AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL  225 (353)
T ss_dssp             EEEEEEESSSCEEEEEETTTTEEEE--------EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEEecCCCceEEEEcCCCCceEE--------EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC
Confidence            887776  37889999998776421        111 233467899999999999999999999999999887655443 


Q ss_pred             ---cCCceeEEEEcCCCCEEEEecC-CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868          153 ---AHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       153 ---~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                         +...+..++|+|+++++++++. ++.|.+||..+++.+..+....   ...++|+|+|+++    .++...++.|.+
T Consensus       226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l----~v~~~~~~~v~~  298 (353)
T 3vgz_A          226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEA----YVTHRQAGKVSV  298 (353)
T ss_dssp             CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEE----EEEETTTTEEEE
T ss_pred             CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEE----EEEECCCCeEEE
Confidence               2335788999999997776654 5899999999999888877533   3568999999973    356667899999


Q ss_pred             EECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ||..+++.+..+.. ...+..++|+|||++|+
T Consensus       299 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~  329 (353)
T 3vgz_A          299 IDAKSYKVVKTFDT-PTHPNSLALSADGKTLY  329 (353)
T ss_dssp             EETTTTEEEEEEEC-CSEEEEEEECTTSCEEE
T ss_pred             EECCCCeEEEEEec-CCCCCeEEEcCCCCEEE
Confidence            99999998766654 34678999999999775

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=2.6e-25  Score=178.69  Aligned_cols=189  Identities=11%  Similarity=0.045  Sum_probs=143.3

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc-------ccee-eeeCCCCCCCCCeEEEEEeeCCcEEE----Eec
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD-------INLL-AKKMPPLQDAGPQKCLSFSVDGSRFA----AGG  131 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-------~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~----~~~  131 (261)
                      ..+..+++++++.++++++.++ +++|+.......       .... ......+.+...|.+++|+|++++|+    +++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            4578899999999999998888 999886432110       0000 00011223456799999999999999    788


Q ss_pred             cCCeEEEEEccCc--------e---EEeeccccCCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc
Q 024868          132 VDGHLRIMHWPSL--------R---IILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK  199 (261)
Q Consensus       132 ~d~~i~~~d~~~~--------~---~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  199 (261)
                      .|+.|++||+.+.        +   .......|...|.+++|+|+ +++|++++.|+.|++||+++++.+.....|.. .
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~-~  194 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV-A  194 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG-C
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC-c
Confidence            8999999998765        1   12334456678999999997 88999999999999999999877655555444 6


Q ss_pred             eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-------CcCeeEEEEeeCCCEEe
Q 024868          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-------~~~v~~~~~s~dg~~la  260 (261)
                      +.+++|+|+|++     +++++.||.|++||++ ++....+..+       ...+.+++|++++.+++
T Consensus       195 v~~v~wspdg~~-----lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~  256 (434)
T 2oit_A          195 VTSVCWSPKGKQ-----LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI  256 (434)
T ss_dssp             EEEEEECTTSSC-----EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred             eeEEEEcCCCCE-----EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence            999999999998     6889999999999998 4544434332       23789999999998874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1e-23  Score=164.16  Aligned_cols=232  Identities=12%  Similarity=0.149  Sum_probs=152.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCC-CCCCCCCceEEEEEcCC--CCceecCCeEEeeecCCCCCceEEEECCCCCeEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSS-RASSSPSVLEIFSFDPK--TTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (261)
                      ...+.+++|+|+   ...+++++.+ +        .+..|+.+  ++.+    .....+..+. .+..++|+|++++|++
T Consensus        37 ~~~~~~~~~spd---g~~l~~~~~~~~--------~v~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~~  100 (343)
T 1ri6_A           37 PGQVQPMVVSPD---KRYLYVGVRPEF--------RVLAYRIAPDDGAL----TFAAESALPG-SLTHISTDHQGQFVFV  100 (343)
T ss_dssp             SSCCCCEEECTT---SSEEEEEETTTT--------EEEEEEECTTTCCE----EEEEEEECSS-CCSEEEECTTSSEEEE
T ss_pred             CCCCceEEECCC---CCEEEEeecCCC--------eEEEEEecCCCCce----eeccccccCC-CCcEEEEcCCCCEEEE
Confidence            346778889885   3445544443 5        55555543  4443    1122333333 7889999999998877


Q ss_pred             Eec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccC-ceEEe----ecc-c
Q 024868           81 STT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-LRIIL----DEP-K  152 (261)
Q Consensus        81 ~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~-~  152 (261)
                      ++. ++.|.+||+..+.. ...    .........+.+++|+|+++++++++ .++.|.+||+.+ ++...    ... .
T Consensus       101 ~~~~~~~i~~~d~~~~~~-~~~----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  175 (343)
T 1ri6_A          101 GSYNAGNVSVTRLEDGLP-VGV----VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV  175 (343)
T ss_dssp             EETTTTEEEEEEEETTEE-EEE----EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             EecCCCeEEEEECCCCcc-ccc----cccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccC
Confidence            665 78899999963221 111    11222345688899999999888776 889999999987 54321    112 2


Q ss_pred             cCCceeEEEEcCCCCEEEEe-cCCCcEEEEEccC--CcE--EEEEeecC-----CCceEEEEEecCCCcceEEEEEeeCC
Q 024868          153 AHKSVLDMDFSLDSEFLATT-STDGSARIWKTED--GVA--WTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGD  222 (261)
Q Consensus       153 ~~~~v~~~~~s~~~~~l~~~-~~d~~i~iwd~~~--~~~--~~~~~~~~-----~~~v~~~~~~p~~~~~~~~~~~~~~~  222 (261)
                      ....+..++|+|++++++++ ..++.+.+||+..  ++.  ........     ...+..++|+|+|+++    +++...
T Consensus       176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l----~v~~~~  251 (343)
T 1ri6_A          176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL----YACDRT  251 (343)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE----EEEETT
T ss_pred             CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE----EEEecC
Confidence            23468899999999977654 4789999999953  433  22222111     1246689999999973    246667


Q ss_pred             CcEEEEEECC--C--CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          223 KALLAVYDIS--T--WNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       223 d~~i~~~d~~--~--~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ++.|.+||+.  +  .+.+..+.... .+..++|+|||++|++
T Consensus       252 ~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          252 ASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIA  293 (343)
T ss_dssp             TTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEE
T ss_pred             CCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEE
Confidence            8999999998  3  33444444333 4889999999998763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=8e-24  Score=164.30  Aligned_cols=226  Identities=11%  Similarity=0.061  Sum_probs=157.7

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .++ +++|+|+.  ..+++++..++        .++.||..+...     ....+..+.....+++|+|+|++++++..+
T Consensus        41 ~~~-~~~~s~dg--~~l~~~~~~~~--------~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  104 (331)
T 3u4y_A           41 DFV-DTAITSDC--SNVVVTSDFCQ--------TLVQIETQLEPP-----KVVAIQEGQSSMADVDITPDDQFAVTVTGL  104 (331)
T ss_dssp             CEE-EEEECSSS--CEEEEEESTTC--------EEEEEECSSSSC-----EEEEEEECSSCCCCEEECTTSSEEEECCCS
T ss_pred             Ccc-eEEEcCCC--CEEEEEeCCCC--------eEEEEECCCCce-----eEEecccCCCCccceEECCCCCEEEEecCC
Confidence            445 88998863  44556666677        899999887653     122344455555559999999999865555


Q ss_pred             C---cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCe-EEEEEccCceEE----eeccccCC
Q 024868           85 G---GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGH-LRIMHWPSLRII----LDEPKAHK  155 (261)
Q Consensus        85 g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~-i~~~d~~~~~~~----~~~~~~~~  155 (261)
                      +   .|.+||+.+++...        .+.......+++|+|+|++++++ ..++. +.+|++.....+    ........
T Consensus       105 ~~~~~i~v~d~~~~~~~~--------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  176 (331)
T 3u4y_A          105 NHPFNMQSYSFLKNKFIS--------TIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGT  176 (331)
T ss_dssp             SSSCEEEEEETTTTEEEE--------EEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSS
T ss_pred             CCcccEEEEECCCCCeEE--------EEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCC
Confidence            3   89999998776421        12234456899999999866655 45577 999998754332    12223344


Q ss_pred             ceeEEEEcCCCCEEEE-ecCCCcEEEEEccCCcE---EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          156 SVLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~-~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      ....++|+|+|++++. ...++.|++||+.+++.   +..+..+  ..+..++|+|||+++    .++...++.|.+||+
T Consensus       177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l----~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTV----YVLTESTVDVFNFNQ  250 (331)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEE----EEECSSEEEEEEEET
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEE----EEEEcCCCEEEEEEC
Confidence            6899999999996654 55689999999999887   7766643  347899999999973    245556788999999


Q ss_pred             CCCeE--Eeeeecc----Cc---CeeEEEEeeCCCEEe
Q 024868          232 STWNK--IGHKRLL----RK---PASVLSISLDGKYLA  260 (261)
Q Consensus       232 ~~~~~--~~~~~~~----~~---~v~~~~~s~dg~~la  260 (261)
                      .+++.  +..+...    ..   ....++|+|||++|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  288 (331)
T 3u4y_A          251 LSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF  288 (331)
T ss_dssp             TTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred             CCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence            99876  3322211    22   224589999999875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.6e-25  Score=191.08  Aligned_cols=231  Identities=12%  Similarity=0.081  Sum_probs=163.5

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC---CceEEEECCCCCeEEEE
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~   81 (261)
                      ..+.+++|+|+.   .+++. +.++        .++.||..+++.      ...+..|..   .|.+++|||||++|+++
T Consensus        17 ~~~~~~~~spdg---~~~~~-~~dg--------~i~~~d~~~g~~------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~   78 (723)
T 1xfd_A           17 IHDPEAKWISDT---EFIYR-EQKG--------TVRLWNVETNTS------TVLIEGKKIESLRAIRYEISPDREYALFS   78 (723)
T ss_dssp             CCCCCCCBSSSS---CBCCC-CSSS--------CEEEBCGGGCCC------EEEECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred             ccccccEEcCCC---cEEEE-eCCC--------CEEEEECCCCcE------EEEeccccccccccceEEECCCCCEEEEE
Confidence            456788999974   34444 5666        788999877664      445555554   49999999999999998


Q ss_pred             ecC---------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc
Q 024868           82 TTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (261)
Q Consensus        82 ~~d---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  152 (261)
                      +.+         +.+++||+.++.. .. +   .....+...+..++|||||+.|++++. +.|++||+.+++.......
T Consensus        79 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~-l---~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           79 YNVEPIYQHSYTGYYVLSKIPHGDP-QS-L---DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             ESCCCCSSSCCCSEEEEEESSSCCC-EE-C---CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             ecCccceeecceeeEEEEECCCCce-Ee-c---cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence            764         6788999988763 11 1   111122345788999999999999864 7999999988776544443


Q ss_pred             cCCce------------------eEEEEcCCCCEEEEecCCC----------------------------------cEEE
Q 024868          153 AHKSV------------------LDMDFSLDSEFLATTSTDG----------------------------------SARI  180 (261)
Q Consensus       153 ~~~~v------------------~~~~~s~~~~~l~~~~~d~----------------------------------~i~i  180 (261)
                      +...+                  .+++|||||++|++++.|+                                  .|++
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~  232 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV  232 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence            33322                  7899999999999887543                                  7999


Q ss_pred             EEccCCcEEEEEeecC-----CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec-cCcCe----eEE
Q 024868          181 WKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPA----SVL  250 (261)
Q Consensus       181 wd~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v----~~~  250 (261)
                      ||+.+++....+..+.     ...+..++|+|||+++ +.....+..+..|++||+.+++....... +...+    ..+
T Consensus       233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  311 (723)
T 1xfd_A          233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVA-VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP  311 (723)
T ss_dssp             EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEE-EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCC
T ss_pred             EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEE-EEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCc
Confidence            9999888655565431     3358899999999962 11112223557899999999886654433 23333    378


Q ss_pred             EEeeCCCEEe
Q 024868          251 SISLDGKYLA  260 (261)
Q Consensus       251 ~~s~dg~~la  260 (261)
                      +|||||+.|+
T Consensus       312 ~~spdg~~l~  321 (723)
T 1xfd_A          312 VFSKDGRKFF  321 (723)
T ss_dssp             EECTTSCSEE
T ss_pred             eEcCCCCeEE
Confidence            9999999776

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=2.2e-24  Score=164.26  Aligned_cols=203  Identities=12%  Similarity=0.031  Sum_probs=145.6

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeC-CccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      .|+.||..++..       ..+..|...+.+++|+|++++|++++ ++.|++||+.+ +....      .....+...+.
T Consensus        23 ~i~~~d~~~~~~-------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~------~~~~~~~~~~~   88 (297)
T 2ojh_A           23 SIEIFNIRTRKM-------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK------VDTGFATICNN   88 (297)
T ss_dssp             EEEEEETTTTEE-------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE------CCCTTCCCBCS
T ss_pred             eEEEEeCCCCce-------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE------ecccccccccc
Confidence            888999887763       23455788999999999999999876 78899999988 65311      11111235678


Q ss_pred             EEEEeeCCcEEEEec--cCCe--EEEEEccCceEEeeccccCCceeEEEEcCCCCEEE-EecCCCcEEEEEccC-CcEEE
Q 024868          117 CLSFSVDGSRFAAGG--VDGH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTED-GVAWT  190 (261)
Q Consensus       117 ~~~~s~~~~~l~~~~--~d~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~iwd~~~-~~~~~  190 (261)
                      +++|+|++++|++++  .++.  |..++..+++. .. ......+..++|+|++++|+ +++.++.++||+++. +....
T Consensus        89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~  166 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RL-MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET  166 (297)
T ss_dssp             CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EE-CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             ceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EE-eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence            899999999999987  3344  44555444443 22 33344588999999999887 677889899998642 23334


Q ss_pred             EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC-CCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       191 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+..+. ..+.+++|+|+|+++    ++++..++.+++|++. .+..+..+..+...+..++|+|||++|++
T Consensus       167 ~~~~~~-~~~~~~~~s~dg~~l----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  233 (297)
T 2ojh_A          167 RLTHGE-GRNDGPDYSPDGRWI----YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF  233 (297)
T ss_dssp             ECCCSS-SCEEEEEECTTSSEE----EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred             EcccCC-CccccceECCCCCEE----EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence            444443 358999999999973    2445567788888875 44455556667778899999999998873

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=4.7e-24  Score=181.57  Aligned_cols=230  Identities=13%  Similarity=0.066  Sum_probs=162.5

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .+|.+++|+|+   ..++++.  ++        .++.||..++..       ..+..+...+.+++|+|||++|+++ .+
T Consensus        82 ~~v~~~~~spd---~~~~~~~--~~--------~i~~~d~~~~~~-------~~l~~~~~~~~~~~~SpdG~~la~~-~~  140 (706)
T 2z3z_A           82 FPSFRTLDAGR---GLVVLFT--QG--------GLVGFDMLARKV-------TYLFDTNEETASLDFSPVGDRVAYV-RN  140 (706)
T ss_dssp             CCCEEEEETTT---TEEEEEE--TT--------EEEEEETTTTEE-------EEEECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred             cCceeEEECCC---CeEEEEE--CC--------EEEEEECCCCce-------EEccCCcccccCCcCCCCCCEEEEE-EC
Confidence            56999999985   3344443  35        899999887653       2344566778999999999999985 68


Q ss_pred             CcEEEEEEeC-----CccccceeeeeCCC-------CCCCCCeEEEEEeeCCcEEEEec---------------------
Q 024868           85 GGCKLFEVYG-----GATDINLLAKKMPP-------LQDAGPQKCLSFSVDGSRFAAGG---------------------  131 (261)
Q Consensus        85 g~i~i~~~~~-----~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~---------------------  131 (261)
                      +.|++|++.+     ++............       -.+...+.++.|||||++|++++                     
T Consensus       141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence            9999999987     54311100000000       00012257899999999999986                     


Q ss_pred             ------------cCCeEEEEEccCceEEeecc--ccCCceeEEEEcCCCCEEEEecCCC-----cEEEEEccCCcEEEEE
Q 024868          132 ------------VDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFL  192 (261)
Q Consensus       132 ------------~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~  192 (261)
                                  .+..|++||+.+++......  .+...+.+++|+|||++|++++.++     .|++||+.+++....+
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence                        34679999998887644332  2345789999999999999877665     8999999998443333


Q ss_pred             e-ecCCC---ceEEEEEec--CCCcceEEEEEeeCCCcEEEEEECC-CCeEEeeeeccCcCeeE-EEEeeCCCEEe
Q 024868          193 T-RNSDE---KIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASV-LSISLDGKYLA  260 (261)
Q Consensus       193 ~-~~~~~---~v~~~~~~p--~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~v~~-~~~s~dg~~la  260 (261)
                      . .....   .+..++|+|  ||++     ++++..++.+++|++. +++.+..+..+...+.. ++|+|||+.|+
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~~-----l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~  371 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQF-----IWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY  371 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSEE-----EEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEE
T ss_pred             EEccCCCeECccCCceeecCCCCEE-----EEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEE
Confidence            2 22221   246789999  9986     5677788888888875 56666666666667776 89999999875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=2e-22  Score=157.48  Aligned_cols=237  Identities=11%  Similarity=0.059  Sum_probs=154.0

Q ss_pred             eeeEEEEEeeCCcceEEEEecC--CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868            6 TVTCGSWIKRPENVNLVVLGKS--SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-   82 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-   82 (261)
                      .+..++|+|+.  . +++++..  ++        .|+.|+..++..    .....+..+...+..++|+|+|++|++++ 
T Consensus        41 ~p~~~a~spdg--~-l~~~~~~~~~~--------~v~~~~~~~g~~----~~~~~~~~~~~~p~~~a~spdg~~l~~~~~  105 (347)
T 3hfq_A           41 NPTYLALSAKD--C-LYSVDKEDDEG--------GIAAWQIDGQTA----HKLNTVVAPGTPPAYVAVDEARQLVYSANY  105 (347)
T ss_dssp             CCCCEEECTTC--E-EEEEEEETTEE--------EEEEEEEETTEE----EEEEEEEEESCCCSEEEEETTTTEEEEEET
T ss_pred             CcceEEEccCC--e-EEEEEecCCCc--------eEEEEEecCCcE----EEeeeeecCCCCCEEEEECCCCCEEEEEeC
Confidence            34557777752  3 4444432  34        677777755543    11223344567889999999999988887 


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCC-----CCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc-CceEEe--eccc-c
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPP-----LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIIL--DEPK-A  153 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~-~  153 (261)
                      .++.+.+|++................     ......+.+++|+|+|+++++...++.|++|++. +++...  .... .
T Consensus       106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  185 (347)
T 3hfq_A          106 HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA  185 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT
T ss_pred             CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC
Confidence            67899999996432211111100000     0112358899999999966666678899999998 443321  1112 2


Q ss_pred             CCceeEEEEcCCCCEEEE-ecCCCcEEEEEccC--CcEE--EEEeecCC-----CceEEEEEecCCCcceEEEEEeeCCC
Q 024868          154 HKSVLDMDFSLDSEFLAT-TSTDGSARIWKTED--GVAW--TFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDK  223 (261)
Q Consensus       154 ~~~v~~~~~s~~~~~l~~-~~~d~~i~iwd~~~--~~~~--~~~~~~~~-----~~v~~~~~~p~~~~~~~~~~~~~~~d  223 (261)
                      ...+..++|+|||+++++ ...++.+.+|++..  ++..  ..+.....     ..+..++|+|||+++|    ++...+
T Consensus       186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~----v~~~~~  261 (347)
T 3hfq_A          186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY----VSNRGY  261 (347)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE----EEEETT
T ss_pred             CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE----EEeCCC
Confidence            235788999999996665 56688999999884  5432  22222111     2488899999999732    455567


Q ss_pred             cEEEEEECCC---CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          224 ALLAVYDIST---WNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       224 ~~i~~~d~~~---~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +.|.+||+..   .+.+.....+...+..++|+|||++|++
T Consensus       262 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          262 NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred             CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence            8999999973   2444445555567889999999998763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2.4e-22  Score=157.17  Aligned_cols=239  Identities=12%  Similarity=0.064  Sum_probs=165.9

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ec
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT   83 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~   83 (261)
                      ..++.++|+|+.  ..+ +++..++.. ....-.++.||..+.+.      ...+.. ...+..++|+|+|++++++ ..
T Consensus        41 ~~~~~~~~s~dg--~~l-~~~~~~~~~-~~~~~~v~~~d~~~~~~------~~~~~~-~~~~~~~~~s~dg~~l~v~~~~  109 (353)
T 3vgz_A           41 KGAYEMAYSQQE--NAL-WLATSQSRK-LDKGGVVYRLDPVTLEV------TQAIHN-DLKPFGATINNTTQTLWFGNTV  109 (353)
T ss_dssp             SSEEEEEEETTT--TEE-EEEECCCTT-TEESEEEEEECTTTCCE------EEEEEE-SSCCCSEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCC--CEE-EEEcCCCcC-CCCCccEEEEcCCCCeE------EEEEec-CCCcceEEECCCCCEEEEEecC
Confidence            346778888853  333 433322100 00011799999987764      222322 3457889999999966555 44


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCC--CCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPP--LQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~  159 (261)
                      ++.|.+||..+++............  ......+.+++|+|+++++++++  .++.|.+||..+++....+......+..
T Consensus       110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence            7899999998876422221100000  00011268899999999877775  4788999999998887665534556889


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec---CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      ++|+|+|+++++++.++.+.+||+.+++.+..+...   ....+..++|+|+|+++    .++...++.|.+||+.+++.
T Consensus       190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l----~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA----FITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE----EEEESSSSEEEEEETTTCCE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE----EEEeCCCCEEEEEECCCCcE
Confidence            999999999999999999999999999988877642   12247789999999974    24456678999999999988


Q ss_pred             EeeeeccCcCeeEEEEeeCCCEEe
Q 024868          237 IGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +..+....  ...++|+|||++|+
T Consensus       266 ~~~~~~~~--~~~~~~s~dg~~l~  287 (353)
T 3vgz_A          266 LAKVAAPE--SLAVLFNPARNEAY  287 (353)
T ss_dssp             EEEEECSS--CCCEEEETTTTEEE
T ss_pred             EEEEEcCC--CceEEECCCCCEEE
Confidence            76665433  36799999999664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1.5e-22  Score=157.17  Aligned_cols=216  Identities=10%  Similarity=0.039  Sum_probs=154.8

Q ss_pred             cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeCCc
Q 024868           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGA   96 (261)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~   96 (261)
                      ...+++++..++        .|..||..++++      ...+..+...+ .++|+|+++++++++. ++.|++||..++.
T Consensus         9 ~~~~~v~~~~~~--------~v~~~d~~~~~~------~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~   73 (331)
T 3u4y_A            9 SNFGIVVEQHLR--------RISFFSTDTLEI------LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP   73 (331)
T ss_dssp             CCEEEEEEGGGT--------EEEEEETTTCCE------EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS
T ss_pred             CCEEEEEecCCC--------eEEEEeCcccce------eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            356677887888        899999988765      33344455566 9999999997776665 7899999998776


Q ss_pred             cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC---eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe-
Q 024868           97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-  172 (261)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-  172 (261)
                      .......      .+..+..+++|+|+|++++++..++   .|.+||+.+++.+..+. ......+++|+|+|++++++ 
T Consensus        74 ~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~  146 (331)
T 3u4y_A           74 PKVVAIQ------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGLILID  146 (331)
T ss_dssp             CEEEEEE------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCEEEEE
T ss_pred             eeEEecc------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEEEEEe
Confidence            4111111      1223344499999999998665553   89999999888765543 34457899999999866554 


Q ss_pred             cCCCc-EEEEEccCCcEEEEE---eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE---EeeeeccCc
Q 024868          173 STDGS-ARIWKTEDGVAWTFL---TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRK  245 (261)
Q Consensus       173 ~~d~~-i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~---~~~~~~~~~  245 (261)
                      ..++. +.+|++.....+...   .......+..++|+|+|+++    +++...++.|++||+.+++.   +..+. ...
T Consensus       147 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l----~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~  221 (331)
T 3u4y_A          147 RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA----FVANLIGNSIGILETQNPENITLLNAVG-TNN  221 (331)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE----EEEETTTTEEEEEECSSTTSCEEEEEEE-CSS
T ss_pred             cCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE----EEEeCCCCeEEEEECCCCcccceeeecc-CCC
Confidence            45578 999998754332111   11223358899999999973    35666789999999998887   65554 346


Q ss_pred             CeeEEEEeeCCCEEe
Q 024868          246 PASVLSISLDGKYLA  260 (261)
Q Consensus       246 ~v~~~~~s~dg~~la  260 (261)
                      .+..++|+|||++|+
T Consensus       222 ~~~~~~~spdg~~l~  236 (331)
T 3u4y_A          222 LPGTIVVSRDGSTVY  236 (331)
T ss_dssp             CCCCEEECTTSSEEE
T ss_pred             CCceEEECCCCCEEE
Confidence            678999999999765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=3.5e-24  Score=172.08  Aligned_cols=168  Identities=10%  Similarity=-0.025  Sum_probs=126.8

Q ss_pred             CCCCceEEEECCCCCeEE----EEecCCcEEEEEEeCCcc----ccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEecc
Q 024868           62 SEGDPMTIAVNPSGDDFV----CSTTNGGCKLFEVYGGAT----DINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGV  132 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~----~~~~dg~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~  132 (261)
                      +...|.+++|+|++++|+    +++.|+.|++||+.+...    ..+.+........|...|.+++|+|+ +++|++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            567899999999999999    788899999999976410    00000011112235678999999997 889999999


Q ss_pred             CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC------CceEEEEEe
Q 024868          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD------EKIELCRFS  206 (261)
Q Consensus       133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~~  206 (261)
                      ||+|++||++++........|...|.+++|+|+|++|++++.|+.|++||.+ ++....+..+..      ..+.+++|+
T Consensus       171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence            9999999999887665556667789999999999999999999999999998 666665544321      258899999


Q ss_pred             cCCCcceEEEEEeeCCC------cEEEEEECCCC
Q 024868          207 KDGTKPFLFCTVQRGDK------ALLAVYDISTW  234 (261)
Q Consensus       207 p~~~~~~~~~~~~~~~d------~~i~~~d~~~~  234 (261)
                      +++.+  ++  +....+      ..+++||+++.
T Consensus       250 ~~~~~--l~--~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          250 GTYVF--AI--VYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ETTEE--EE--EEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCceE--EE--EEccCCCccCCCCceEEEEeccC
Confidence            97765  21  222222      24999999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=7.1e-24  Score=181.39  Aligned_cols=228  Identities=11%  Similarity=0.092  Sum_probs=162.4

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCC---ceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT---SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      ..|.+++|+|+   ...+++++. +        .|+.||..++   ..       ..+..|...+..++|+|||++|+++
T Consensus       109 ~~v~~~~~SpD---g~~l~~~~~-~--------~i~~~d~~~~~~~~~-------~~l~~~~~~~~~~~~SPDG~~la~~  169 (741)
T 2ecf_A          109 TGIVDYQWSPD---AQRLLFPLG-G--------ELYLYDLKQEGKAAV-------RQLTHGEGFATDAKLSPKGGFVSFI  169 (741)
T ss_dssp             EESCCCEECTT---SSEEEEEET-T--------EEEEEESSSCSTTSC-------CBCCCSSSCEEEEEECTTSSEEEEE
T ss_pred             cCcceeEECCC---CCEEEEEeC-C--------cEEEEECCCCCcceE-------EEcccCCcccccccCCCCCCEEEEE
Confidence            45889999996   445665554 5        8999998776   42       2456677889999999999999988


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCC----------CCCCCeEEEEEeeCCcEEEEeccCC-----------------
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPL----------QDAGPQKCLSFSVDGSRFAAGGVDG-----------------  134 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~d~-----------------  134 (261)
                      + ++.|++||+.++....... ......          .....+..++|||||++|++++.|+                 
T Consensus       170 ~-~~~i~~~d~~~g~~~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~  247 (741)
T 2ecf_A          170 R-GRNLWVIDLASGRQMQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD  247 (741)
T ss_dssp             E-TTEEEEEETTTTEEEECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred             e-CCcEEEEecCCCCEEEecc-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence            6 5689999998765311100 000000          0001247799999999999987665                 


Q ss_pred             ----------------eEEEEEccC-ceEEeecc--ccCCceeEEEEcCCCCEEEEecC-----CCcEEEEEccCCcEEE
Q 024868          135 ----------------HLRIMHWPS-LRIILDEP--KAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTEDGVAWT  190 (261)
Q Consensus       135 ----------------~i~~~d~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~iwd~~~~~~~~  190 (261)
                                      .|++||+.+ ++......  .+...+..++| |||++|++++.     +..|++||+.+++...
T Consensus       248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~  326 (741)
T 2ecf_A          248 VIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV  326 (741)
T ss_dssp             EEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred             ceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence                            788999988 76543332  24457899999 99999987653     5679999999998877


Q ss_pred             EEeecCCC---ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC-CCeEEeeeeccCcCeeEE-EEeeCCCEEe
Q 024868          191 FLTRNSDE---KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVL-SISLDGKYLA  260 (261)
Q Consensus       191 ~~~~~~~~---~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~v~~~-~~s~dg~~la  260 (261)
                      .+..+...   .+..++|+|||+.     +++++.++.+++|.+. +++ ...+..+...+..+ .|+|||+.|+
T Consensus       327 ~~~~~~~~~~~~~~~~~~spdg~~-----~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~  395 (741)
T 2ecf_A          327 LAHETSPTWVPLHNSLRFLDDGSI-----LWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAY  395 (741)
T ss_dssp             EEEEECSSCCCCCSCCEECTTSCE-----EEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEE
T ss_pred             EEEcCCCCcCCcCCceEECCCCeE-----EEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEE
Confidence            77655432   2468899999995     5677788876777654 344 55666667778787 5999999775

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=2.5e-23  Score=184.02  Aligned_cols=219  Identities=13%  Similarity=0.071  Sum_probs=166.3

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC-----------CCCCceEEEEC-C
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-----------SEGDPMTIAVN-P   73 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~   73 (261)
                      .+.+.+|+|+   ...++.+ .++        .++.|+.....+      . .+..           |...+.+++|+ |
T Consensus       246 ~~~~~~~SpD---G~~la~~-~~~--------~i~~~d~~~~~l------~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p  306 (1045)
T 1k32_A          246 DYYPRHLNTD---GRRILFS-KGG--------SIYIFNPDTEKI------E-KIEIGDLESPEDRIISIPSKFAEDFSPL  306 (1045)
T ss_dssp             SSCEEEEEES---SSCEEEE-ETT--------EEEEECTTTCCE------E-ECCCCCCCBCCSEEEECGGGGEEEEEEC
T ss_pred             CcceeeEcCC---CCEEEEE-eCC--------EEEEecCCceEe------e-eeccCcccccccccccccccceeeecCC
Confidence            3567789886   3345555 356        889998844433      1 2222           34579999999 9


Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCC-CeEEEEEeeCCcEEEEeccCCeEE-EEEccCceEEeecc
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG-PQKCLSFSVDGSRFAAGGVDGHLR-IMHWPSLRIILDEP  151 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~-~~d~~~~~~~~~~~  151 (261)
                      ||++|++++ ++.+++|+...+..        .....+.. .+..++|+ ||+.|++++.++.+. +||+..++.. .+.
T Consensus       307 dG~~la~~~-~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~  375 (1045)
T 1k32_A          307 DGDLIAFVS-RGQAFIQDVSGTYV--------LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE  375 (1045)
T ss_dssp             GGGCEEEEE-TTEEEEECTTSSBE--------EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred             CCCEEEEEE-cCEEEEEcCCCCce--------EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec
Confidence            999999887 78899999876542        11122344 78899999 999999988888888 9998877654 344


Q ss_pred             ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC----------
Q 024868          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG----------  221 (261)
Q Consensus       152 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~----------  221 (261)
                      .+...+..++|+|||++|++++.++.|++||+.+++.......+.. .+.+++|+|||+++     +.++          
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~-~v~~~~~SpDG~~l-----a~~~~~~~~~~~~~  449 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFI-----AYGFPLKHGETDGY  449 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEE-----EEEEEECSSTTCSC
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC-CccceEECCCCCeE-----EEEecCccccccCC
Confidence            5556899999999999999999999999999999988777655544 58999999999983     3322          


Q ss_pred             CCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       222 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .++.|++||+.+++ +..+..+...+..++|+|||++|++
T Consensus       450 ~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          450 VMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             CEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             CCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEE
Confidence            24699999999887 4456667777889999999998863

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2e-22  Score=156.89  Aligned_cols=218  Identities=12%  Similarity=0.134  Sum_probs=148.1

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCC-CceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-CcEEEEEEe--C
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVY--G   94 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~--~   94 (261)
                      ..++++++.++        .+..|+.+. +..    . ......+...+.+++|+|++++|++++.+ +.|.+|++.  +
T Consensus         5 ~~l~~~~~~~~--------~v~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~   71 (343)
T 1ri6_A            5 QTVYIASPESQ--------QIHVWNLNHEGAL----T-LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD   71 (343)
T ss_dssp             EEEEEEEGGGT--------EEEEEEECTTSCE----E-EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEEEeCCCCC--------eEEEEEECCCCcE----E-EeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence            34555556677        677776642 221    1 12223466789999999999999888876 899999998  3


Q ss_pred             CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEcc---CceEEeeccccCCceeEEEEcCCCCEEE
Q 024868           95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP---SLRIILDEPKAHKSVLDMDFSLDSEFLA  170 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~  170 (261)
                      +..  ...    ..+.....+..++|+|+++++++++ .++.|.+||+.   ..+.... ......+.+++|+|++++++
T Consensus        72 ~~~--~~~----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~  144 (343)
T 1ri6_A           72 GAL--TFA----AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-VEGLDGCHSANISPDNRTLW  144 (343)
T ss_dssp             CCE--EEE----EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-ECCCTTBCCCEECTTSSEEE
T ss_pred             Cce--eec----cccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-ccCCCCceEEEECCCCCEEE
Confidence            332  111    1111123678999999999887665 48899999994   3333332 33344688999999999888


Q ss_pred             Eec-CCCcEEEEEccC-CcEEE----EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC--CeE--Eeee
Q 024868          171 TTS-TDGSARIWKTED-GVAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK--IGHK  240 (261)
Q Consensus       171 ~~~-~d~~i~iwd~~~-~~~~~----~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~--~~~--~~~~  240 (261)
                      +++ .++.|++||+.+ ++...    ....+....+..++|+|+++++    ++++..++.|.+||+..  ++.  ....
T Consensus       145 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l----~~~~~~~~~i~~~~~~~~~g~~~~~~~~  220 (343)
T 1ri6_A          145 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA----YCVNELNSSVDVWELKDPHGNIECVQTL  220 (343)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             EecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence            776 789999999987 65433    2333334458899999999973    35566789999999953  432  2222


Q ss_pred             ecc------CcCeeEEEEeeCCCEEe
Q 024868          241 RLL------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       241 ~~~------~~~v~~~~~s~dg~~la  260 (261)
                      ...      ...+..++|+|||++|+
T Consensus       221 ~~~~~~~~~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          221 DMMPENFSDTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             cccCccccccCCccceEECCCCCEEE
Confidence            211      12456899999999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=4.5e-22  Score=154.49  Aligned_cols=214  Identities=14%  Similarity=0.118  Sum_probs=152.5

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCC-CceEEEECCCCCeEEE-EecCCcEEEEEEeCCc
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEG-DPMTIAVNPSGDDFVC-STTNGGCKLFEVYGGA   96 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~   96 (261)
                      .++++++.++        .|+.||..+.+.      ...+. ++.. .+..++|+|+++.+++ ...++.|.+||+.+++
T Consensus         2 ~~~v~~~~~~--------~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~   67 (337)
T 1pby_B            2 DYILAPARPD--------KLVVIDTEKMAV------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTT--------EEEEEETTTTEE------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred             cEEEEcCCCC--------eEEEEECCCCcE------EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC
Confidence            3678888888        899999987664      22233 2211 4789999999987654 4557899999998776


Q ss_pred             cccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec------------cCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868           97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  164 (261)
                      .........  ...+...+..++|+|+|++++++.            .++.|.+||+.+++....+.. ...+.+++|+|
T Consensus        68 ~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~  144 (337)
T 1pby_B           68 TLGRIDLST--PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR  144 (337)
T ss_dssp             EEEEEECCB--TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred             eEeeEEcCC--cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence            422211000  000012466799999999988885            579999999988877654433 44678899999


Q ss_pred             CCCEEEEecCCCcEEEEEccCCcEEEEEeecC------------------------------------------------
Q 024868          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------------------------------------------------  196 (261)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------  196 (261)
                      +|++|+++  ++.|++||+.+++.+..+..+.                                                
T Consensus       145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  222 (337)
T 1pby_B          145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence            99988887  6889999998887765543221                                                


Q ss_pred             -----------------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          197 -----------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       197 -----------------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                                       ...+.+++|+|+|+++     +.+  ++.|++||+.+++.+..+.. ...+.+++|+|||++|
T Consensus       223 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-----~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l  294 (337)
T 1pby_B          223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA-----FGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTV  294 (337)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECTTSSEE-----EEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred             EEeCCCCCceEeecCCCCCceeeEEECCCCCEE-----EEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEE
Confidence                             0123468999999973     333  68999999999988765553 4567899999999987


Q ss_pred             e
Q 024868          260 A  260 (261)
Q Consensus       260 a  260 (261)
                      +
T Consensus       295 ~  295 (337)
T 1pby_B          295 W  295 (337)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=2.5e-22  Score=165.49  Aligned_cols=197  Identities=11%  Similarity=0.050  Sum_probs=149.7

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEE--eCCc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEV--YGGA   96 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~--~~~~   96 (261)
                      ..+++++..++        .|..||..+.++      ...+..+.. +..++|+|||++|++++.|+.|++||+  .+.+
T Consensus       149 ~~~~vs~~~d~--------~V~v~D~~t~~~------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~  213 (543)
T 1nir_A          149 NLFSVTLRDAG--------QIALVDGDSKKI------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT  213 (543)
T ss_dssp             GEEEEEEGGGT--------EEEEEETTTCCE------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred             CEEEEEEcCCC--------eEEEEECCCceE------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence            56788888888        899999988765      334442222 889999999999999999999999999  5544


Q ss_pred             cccceeeeeCCCCCCCCCeEEEEEee----CCcEEEEec-cCCeEEEEEccCceEEeeccc----------cCC-ceeEE
Q 024868           97 TDINLLAKKMPPLQDAGPQKCLSFSV----DGSRFAAGG-VDGHLRIMHWPSLRIILDEPK----------AHK-SVLDM  160 (261)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~----------~~~-~v~~~  160 (261)
                      .        ...+.....+..++|+|    ||+++++++ .+++|.+||..+++.+..+..          |.. .+..+
T Consensus       214 ~--------~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i  285 (543)
T 1nir_A          214 K--------VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI  285 (543)
T ss_dssp             E--------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred             E--------EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEE
Confidence            3        11222345679999999    999999987 489999999999887665543          223 68899


Q ss_pred             EEcCCCC-EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          161 DFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       161 ~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      .++|++. ++++...++.|.+||..+.+.+..........+.++.|+|+|+++    ++++..+++|.+||+.+++.+..
T Consensus       286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l----~va~~~~~~v~v~D~~tg~l~~~  361 (543)
T 1nir_A          286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF----MTAANNSNKVAVIDSKDRRLSAL  361 (543)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE----EEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE----EEEecCCCeEEEEECCCCeEEEe
Confidence            9999766 456677889999999988765442111233458899999999973    35566788999999999998876


Q ss_pred             eec
Q 024868          240 KRL  242 (261)
Q Consensus       240 ~~~  242 (261)
                      +..
T Consensus       362 i~~  364 (543)
T 1nir_A          362 VDV  364 (543)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=2.6e-23  Score=177.40  Aligned_cols=243  Identities=11%  Similarity=0.019  Sum_probs=157.1

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCC-CCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASS-SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .|.+++|+|+   ...++++..+.... ....-.++.||..++..    ........|...+..++|||||++|++++. 
T Consensus        62 ~v~~~~~SpD---g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-  133 (723)
T 1xfd_A           62 RAIRYEISPD---REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-  133 (723)
T ss_dssp             TCSEEEECTT---SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCSSTTCEEEEET-
T ss_pred             ccceEEECCC---CCEEEEEecCccceeecceeeEEEEECCCCce----EeccCCccccccccccEECCCCCEEEEEEC-
Confidence            4889999996   45666665443110 00112788888877653    111122345556889999999999999875 


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCC------------CCCCCeEEEEEeeCCcEEEEeccCC------------------
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPL------------QDAGPQKCLSFSVDGSRFAAGGVDG------------------  134 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~d~------------------  134 (261)
                      +.|++|++.++.... +........            .-...+.+++|||||++|++++.++                  
T Consensus       134 ~~i~~~~~~~g~~~~-~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~  212 (723)
T 1xfd_A          134 NNIYYCAHVGKQAIR-VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT  212 (723)
T ss_dssp             TEEEEESSSSSCCEE-EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred             CeEEEEECCCCceEE-EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCc
Confidence            789999998765421 110000000            0011347899999999999886542                  


Q ss_pred             ----------------eEEEEEccCceEEeecccc------CCceeEEEEcCCCCEEEEecC----CCcEEEEEccCCcE
Q 024868          135 ----------------HLRIMHWPSLRIILDEPKA------HKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVA  188 (261)
Q Consensus       135 ----------------~i~~~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~----d~~i~iwd~~~~~~  188 (261)
                                      .|++||+.+++....+..+      ...+..++|+|||+++++.+.    +..|++||+.+++.
T Consensus       213 ~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~  292 (723)
T 1xfd_A          213 VKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC  292 (723)
T ss_dssp             CEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             ceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence                            7999999887743334332      346899999999998876643    35799999999988


Q ss_pred             EEEEeecCCCce----EEEEEecCCCcceEEEEEeeCCCc------EEEEEE-CCCCeE--EeeeeccCcCeeE-EEEee
Q 024868          189 WTFLTRNSDEKI----ELCRFSKDGTKPFLFCTVQRGDKA------LLAVYD-ISTWNK--IGHKRLLRKPASV-LSISL  254 (261)
Q Consensus       189 ~~~~~~~~~~~v----~~~~~~p~~~~~~~~~~~~~~~d~------~i~~~d-~~~~~~--~~~~~~~~~~v~~-~~~s~  254 (261)
                      ...+..+....+    ..++|+|||+.++   ..++..++      .|++|| ..+++.  ...+......+.. ++|+|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~---~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp  369 (723)
T 1xfd_A          293 TKKHEDESEAWLHRQNEEPVFSKDGRKFF---FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE  369 (723)
T ss_dssp             EEEEEEECSSCCCCCCCCCEECTTSCSEE---EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred             eEEEEeccCCEEeccCCCceEcCCCCeEE---EEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence            776654433333    3789999999842   12244555      677888 444441  3334433344544 69999


Q ss_pred             CCCEEe
Q 024868          255 DGKYLA  260 (261)
Q Consensus       255 dg~~la  260 (261)
                      ||++|+
T Consensus       370 dg~~l~  375 (723)
T 1xfd_A          370 KGNKIY  375 (723)
T ss_dssp             TTTEEE
T ss_pred             CCCEEE
Confidence            999886

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=1.1e-20  Score=148.40  Aligned_cols=239  Identities=13%  Similarity=0.142  Sum_probs=151.0

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCC
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNG   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg   85 (261)
                      +..++|+|+   ..++++++.++  ...+.+.+|.++..++.+    ........+...+..+++  ++++|++++ .++
T Consensus        52 p~~l~~spd---g~~l~~~~~~~--~~~~~v~~~~~~~~~g~~----~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~  120 (361)
T 3scy_A           52 PSYLIPSAD---GKFVYSVNEFS--KDQAAVSAFAFDKEKGTL----HLLNTQKTMGADPCYLTT--NGKNIVTANYSGG  120 (361)
T ss_dssp             CCSEEECTT---SSEEEEEECCS--STTCEEEEEEEETTTTEE----EEEEEEECSSSCEEEEEE--CSSEEEEEETTTT
T ss_pred             CceEEECCC---CCEEEEEEccC--CCCCcEEEEEEeCCCCcE----EEeeEeccCCCCcEEEEE--CCCEEEEEECCCC
Confidence            445677775   34555554431  122345667777765553    112223334556778888  888887776 478


Q ss_pred             cEEEEEEeCCccccceeeeeC-------CCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceE-----------
Q 024868           86 GCKLFEVYGGATDINLLAKKM-------PPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI-----------  146 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~-----------  146 (261)
                      .+.+|++..............       ........+.+++|+|+|+++++++ .++.+.+|++.....           
T Consensus       121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            999999975443211110000       0011123468899999999776654 578999998875431           


Q ss_pred             --EeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEE--EEEeec--CCCceEEEEEecCCCcceEEEEEe
Q 024868          147 --ILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAW--TFLTRN--SDEKIELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       147 --~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~--~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~  219 (261)
                        ..........+..++|+|||+++++++ .++.|.+||+.+++..  ..+...  ....+..++|+|||+++    .++
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l----~v~  276 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYL----YAS  276 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEE----EEE
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEE----EEE
Confidence              112223344678999999999887766 6899999999977542  222211  11236799999999983    244


Q ss_pred             eCC-CcEEEEEECC--CCe--EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          220 RGD-KALLAVYDIS--TWN--KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       220 ~~~-d~~i~~~d~~--~~~--~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ... ++.|.+|++.  +++  .+..... ...+..++|+|||++|++
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~  322 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLV  322 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEE
T ss_pred             CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEE
Confidence            445 6899999995  444  3333333 557789999999998863

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=7.8e-23  Score=174.12  Aligned_cols=228  Identities=11%  Similarity=0.078  Sum_probs=159.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCC-----CceecCCeEEeeecCCCC--------------
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-----TSVYTSPLVTYVFDESEG--------------   64 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~--------------   64 (261)
                      .+.+.+++|+|+   ...+++. .++        .|+.|+..+     +..      ......+..              
T Consensus       120 ~~~~~~~~~Spd---G~~la~~-~~~--------~i~v~~~~~~~~~~g~~------~~~~~~~~~~~~~g~~~~~ee~~  181 (706)
T 2z3z_A          120 NEETASLDFSPV---GDRVAYV-RNH--------NLYIARGGKLGEGMSRA------IAVTIDGTETLVYGQAVHQREFG  181 (706)
T ss_dssp             TTCCTTCEECTT---SSEEEEE-ETT--------EEEEEECBCTTSCCCCC------EESCSCCBTTEEESSCCGGGCTT
T ss_pred             cccccCCcCCCC---CCEEEEE-ECC--------eEEEEecCcccccCCCc------EEeccCCCCCeEcccchhhhhcC
Confidence            356778899986   3455554 455        788888876     442      222222222              


Q ss_pred             CceEEEECCCCCeEEEEe---------------------------------cCCcEEEEEEeCCccccceeeeeCCCCCC
Q 024868           65 DPMTIAVNPSGDDFVCST---------------------------------TNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  111 (261)
                      .+.+++|+|||++|++++                                 .+..|++||+.++.....     .....+
T Consensus       182 ~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~-----~~~~~~  256 (706)
T 2z3z_A          182 IEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL-----QTGEPK  256 (706)
T ss_dssp             CCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC-----CCCSCT
T ss_pred             CCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee-----ccCCCC
Confidence            258999999999999887                                 346799999987653111     111123


Q ss_pred             CCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccCceEEeecc-ccC-C---ceeEEEEcC--CCCEEEEecCCCcEE
Q 024868          112 AGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIILDEP-KAH-K---SVLDMDFSL--DSEFLATTSTDGSAR  179 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~-~~~-~---~v~~~~~s~--~~~~l~~~~~d~~i~  179 (261)
                      ...+..++|+|||++|++++.++     .|++||+.+++....+. ... .   .+..++|+|  ||+++++++.|+.++
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~  336 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH  336 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence            46789999999999999877665     89999999883322222 111 1   246789999  999999999999999


Q ss_pred             EEEcc-CCcEEEEEeecCCCceEE-EEEecCCCcceEEEEEeeCCCc----EEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868          180 IWKTE-DGVAWTFLTRNSDEKIEL-CRFSKDGTKPFLFCTVQRGDKA----LLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (261)
Q Consensus       180 iwd~~-~~~~~~~~~~~~~~~v~~-~~~~p~~~~~~~~~~~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  253 (261)
                      ||++. +++.+..+..+.. .+.. ++|+|+|+.+    ++++..++    .|+.||+.+++.. .+. +...+.+++||
T Consensus       337 l~~~~~~~~~~~~l~~~~~-~v~~~~~~spdg~~l----~~~~~~~~~~~~~l~~~d~~~~~~~-~l~-~~~~~~~~~~s  409 (706)
T 2z3z_A          337 LYLYDTTGRLIRQVTKGEW-EVTNFAGFDPKGTRL----YFESTEASPLERHFYCIDIKGGKTK-DLT-PESGMHRTQLS  409 (706)
T ss_dssp             EEEEETTSCEEEECCCSSS-CEEEEEEECTTSSEE----EEEESSSCTTCBEEEEEETTCCCCE-ESC-CSSSEEEEEEC
T ss_pred             EEEEECCCCEEEecCCCCe-EEEeeeEEcCCCCEE----EEEecCCCCceEEEEEEEcCCCCce-ecc-CCCceEEEEEC
Confidence            99887 6777777765543 4666 7999999974    24444444    7888888876632 233 55678999999


Q ss_pred             eCCCEEeC
Q 024868          254 LDGKYLAM  261 (261)
Q Consensus       254 ~dg~~la~  261 (261)
                      |||++|++
T Consensus       410 pdg~~l~~  417 (706)
T 2z3z_A          410 PDGSAIID  417 (706)
T ss_dssp             TTSSEEEE
T ss_pred             CCCCEEEE
Confidence            99998863

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=5e-22  Score=163.72  Aligned_cols=233  Identities=6%  Similarity=0.008  Sum_probs=166.9

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcC--CCCceecCCeEEeeecCCCCCceEEEECC----CCCeEE
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP--KTTSVYTSPLVTYVFDESEGDPMTIAVNP----SGDDFV   79 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~   79 (261)
                      .+.+++|+|+   ..++++++.++        .|..||.  .+...      ...+. +...+..++|+|    ||++++
T Consensus       180 ~~~~v~~spd---g~~l~v~~~d~--------~V~v~D~~~~t~~~------~~~i~-~g~~p~~va~sp~~~~dg~~l~  241 (543)
T 1nir_A          180 AVHISRMSAS---GRYLLVIGRDA--------RIDMIDLWAKEPTK------VAEIK-IGIEARSVESSKFKGYEDRYTI  241 (543)
T ss_dssp             TEEEEEECTT---SCEEEEEETTS--------EEEEEETTSSSCEE------EEEEE-CCSEEEEEEECCSTTCTTTEEE
T ss_pred             ccceEEECCC---CCEEEEECCCC--------eEEEEECcCCCCcE------EEEEe-cCCCcceEEeCCCcCCCCCEEE
Confidence            3788899885   55677777777        8888998  55443      33444 345689999999    999999


Q ss_pred             EEec-CCcEEEEEEeCCccccceeeeeC----CCCCCCCCeEEEEEeeCCc-EEEEeccCCeEEEEEccCceEEe-eccc
Q 024868           80 CSTT-NGGCKLFEVYGGATDINLLAKKM----PPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIIL-DEPK  152 (261)
Q Consensus        80 ~~~~-dg~i~i~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~  152 (261)
                      +++. +++|.+||..+.+....+.....    ..+.....+..+.++|++. ++++...++.|.+||+.+.+.+. ....
T Consensus       242 v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          242 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred             EEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence            8875 79999999887765332211000    0011234789999999765 45566688999999998755322 1223


Q ss_pred             cCCceeEEEEcCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeec---CCCceEEEEEecCCCcceEEEEEeeC-CCcEEE
Q 024868          153 AHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG-DKALLA  227 (261)
Q Consensus       153 ~~~~v~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~~~~~~~~~~-~d~~i~  227 (261)
                      +...+.++.|+|+|++++++ ..++.|.+||..+++++..+...   +......+ ++|++..+    .+++. .|++|.
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~----~~s~~~~d~~V~  396 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPV----WSTSHLGDGSIS  396 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEE----EEEEBSSSSEEE
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccE----EEeccCCCceEE
Confidence            44568899999999987655 46899999999999998887742   11112222 57885542    35543 678999


Q ss_pred             EEECCC-------CeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          228 VYDIST-------WNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       228 ~~d~~~-------~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +||+.+       ++.+.++..+...+..++++|||++|++
T Consensus       397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v  437 (543)
T 1nir_A          397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV  437 (543)
T ss_dssp             EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEE
T ss_pred             EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEE
Confidence            999998       8888888888888899999999999864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=2.9e-21  Score=150.96  Aligned_cols=212  Identities=13%  Similarity=0.142  Sum_probs=143.3

Q ss_pred             CCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec---CCcEEEEEEeCCccccceeeeeCCCCC
Q 024868           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQ  110 (261)
Q Consensus        34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~  110 (261)
                      ...+.+|.+|..++.+.     ......+...+..++|+|+|+ |++++.   ++.|++|++.++....  +..   ...
T Consensus        15 ~~~i~v~~~d~~tg~~~-----~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~--~~~---~~~   83 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLT-----NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK--LNT---VVA   83 (347)
T ss_dssp             CCEEEEEEEETTTTEEE-----EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE--EEE---EEE
T ss_pred             CCCEEEEEEcCCCCeEE-----EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE--eee---eec
Confidence            34578999998777641     112233456788899999999 655554   5899999997665311  111   011


Q ss_pred             CCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccC-c--eEEeeccc---------cCCceeEEEEcCCCCEEEEecCCCc
Q 024868          111 DAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-L--RIILDEPK---------AHKSVLDMDFSLDSEFLATTSTDGS  177 (261)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~-~--~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~  177 (261)
                      +...+..++|+|||++|++++ .++.+.+|++.. +  ..+.....         ....+.+++|+|+|+++++...++.
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~  163 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDK  163 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTE
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCE
Confidence            245678899999999888887 789999999963 2  22222211         1124788999999996667777889


Q ss_pred             EEEEEcc-CCcEEE--EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC--CeEE--eeeeccC------
Q 024868          178 ARIWKTE-DGVAWT--FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNKI--GHKRLLR------  244 (261)
Q Consensus       178 i~iwd~~-~~~~~~--~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~--~~~~--~~~~~~~------  244 (261)
                      |++||+. +++...  .+.......+..++|+|||+++    +++...++.+.+|++..  ++..  .......      
T Consensus       164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  239 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA----FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH  239 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred             EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence            9999998 555432  2233333357889999999973    35567788999999874  5432  2222222      


Q ss_pred             cCeeEEEEeeCCCEEe
Q 024868          245 KPASVLSISLDGKYLA  260 (261)
Q Consensus       245 ~~v~~~~~s~dg~~la  260 (261)
                      ..+..++|+|||++|+
T Consensus       240 ~~~~~i~~spdG~~l~  255 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLY  255 (347)
T ss_dssp             CEEEEEEECTTSCEEE
T ss_pred             CcceeEEECCCCCEEE
Confidence            3478899999999874

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=1.5e-22  Score=168.83  Aligned_cols=219  Identities=10%  Similarity=-0.003  Sum_probs=150.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-CCceEEEECCCCCeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~   81 (261)
                      ..||++++|+|+   ...+|.++. ++        .+..|+.+++.       ...+..|. ..+..++|+|| +.++++
T Consensus        21 ~~~~~~~~~~~D---G~~la~~s~~~g--------~~~lw~~~~g~-------~~~lt~~~~~~~~~~~~spd-~~l~~~   81 (582)
T 3o4h_A           21 AVEKYSLQGVVD---GDKLLVVGFSEG--------SVNAYLYDGGE-------TVKLNREPINSVLDPHYGVG-RVILVR   81 (582)
T ss_dssp             HSCEEEEEEEET---TTEEEEEEEETT--------EEEEEEEETTE-------EEECCSSCCSEECEECTTCS-EEEEEE
T ss_pred             ccchheeecCCC---CCeEEEEEccCC--------ceeEEEEcCCC-------cEeeecccccccccccCCCC-eEEEEe
Confidence            358999999997   446676554 66        44444444444       22344454 68999999999 666666


Q ss_pred             ec---CCcEEEEEEeC--CccccceeeeeCCCCCCCCCeEEEEEeeCCcE-EEEeccCCeEEEEEccCceEEeeccccCC
Q 024868           82 TT---NGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (261)
Q Consensus        82 ~~---dg~i~i~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  155 (261)
                      +.   +....+|.+..  .....        .+.........+|+|||+. +++.+.++.+.+||+.+++.... ..+..
T Consensus        82 ~~~~g~~~~~l~~~~~~~~g~~~--------~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l-~~~~~  152 (582)
T 3o4h_A           82 DVSKGAEQHALFKVNTSRPGEEQ--------RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL-ARLPG  152 (582)
T ss_dssp             ECSTTSCCEEEEEEETTSTTCCE--------ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE-EEESS
T ss_pred             ccCCCCcceEEEEEeccCCCccc--------cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe-ecCCC
Confidence            54   45577877765  32211        1112234556789998864 33333445566999988876433 33333


Q ss_pred             ceeEEEEcCCCCEEEEecCC----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc--EEEEE
Q 024868          156 SVLDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVY  229 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~--~i~~~  229 (261)
                        .+++|||||++|++++.+    ..|++||+.+++.. .+..+.. .+..++|||||+.     ++++..++  .|++|
T Consensus       153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~-----l~~~~~~~~~~i~~~  223 (582)
T 3o4h_A          153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKV-----TAGLETAREARLVTV  223 (582)
T ss_dssp             --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCE-----EEEEECSSCEEEEEE
T ss_pred             --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCE-----EEEccCCCeeEEEEE
Confidence              889999999999987776    77999999988865 4554444 5899999999998     45666677  89999


Q ss_pred             ECCCCeEEeeeeccCcCeeEEE--------EeeCCCEEe
Q 024868          230 DISTWNKIGHKRLLRKPASVLS--------ISLDGKYLA  260 (261)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~--------~s~dg~~la  260 (261)
                      |+.+++.. .+..+...+..++        |+|||+.++
T Consensus       224 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  261 (582)
T 3o4h_A          224 DPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV  261 (582)
T ss_dssp             CTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             cCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE
Confidence            99998876 5666666666677        999996654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.3e-21  Score=151.88  Aligned_cols=206  Identities=15%  Similarity=0.093  Sum_probs=149.8

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC---CCCCceEEEECCCCCeEEEEe
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      .+.+++|+|+.  ..+++++..++        .|+.||..+.+.    ........   |...+..++|+|+|++|+++.
T Consensus        35 ~~~~~~~s~dg--~~l~v~~~~~~--------~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  100 (337)
T 1pby_B           35 TPMVPMVAPGG--RIAYATVNKSE--------SLVKIDLVTGET----LGRIDLSTPEERVKSLFGAALSPDGKTLAIYE  100 (337)
T ss_dssp             CCCCEEECTTS--SEEEEEETTTT--------EEEEEETTTCCE----EEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred             CccceEEcCCC--CEEEEEeCCCC--------eEEEEECCCCCe----EeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence            46778898863  45666666677        899999877654    11112211   122577899999999998876


Q ss_pred             ------------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec
Q 024868           83 ------------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (261)
Q Consensus        83 ------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  150 (261)
                                  .++.|.+||+.+++....        +.....+.+++|+|++++++++  ++.|++||+.+++....+
T Consensus       101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~  170 (337)
T 1pby_B          101 SPVRLELTHFEVQPTRVALYDAETLSRRKA--------FEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             EEEEECSSCEEECCCEEEEEETTTTEEEEE--------EECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred             cccccccccccccCceEEEEECCCCcEEEE--------EeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeee
Confidence                        578999999987653211        1123456778999999988887  678999999877654322


Q ss_pred             cccC------------------------------------------------------------------CceeEEEEcC
Q 024868          151 PKAH------------------------------------------------------------------KSVLDMDFSL  164 (261)
Q Consensus       151 ~~~~------------------------------------------------------------------~~v~~~~~s~  164 (261)
                      ..+.                                                                  ..+.+++|+|
T Consensus       171 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~  250 (337)
T 1pby_B          171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP  250 (337)
T ss_dssp             CSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred             eccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC
Confidence            2111                                                                  1234689999


Q ss_pred             CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC
Q 024868          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (261)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  244 (261)
                      +|++++++  ++.|++||+.+++.+..+..+  ..+.+++|+|+|++     ++.++.++.|++||+.+++.+..+....
T Consensus       251 dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~-----l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          251 AKTRAFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGST-----VWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             TSSEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCE-----EEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CCCEEEEe--CCeEEEEECCCCcCcceecCC--CceeeEEECCCCCE-----EEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            99999888  799999999999988777643  24789999999997     3455778999999999999887766543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.90  E-value=2.8e-22  Score=171.43  Aligned_cols=227  Identities=11%  Similarity=0.100  Sum_probs=157.2

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC-----ceEEEECCCCCeEE
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-----PMTIAVNPSGDDFV   79 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~   79 (261)
                      ...+.++|+|+   ..+++.+  ++        .|+.||..++..      ...+..|...     ...++|||||++|+
T Consensus        17 ~~~~~~~w~~d---g~~~~~~--~~--------~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Spdg~~l~   77 (740)
T 4a5s_A           17 LKLYSLRWISD---HEYLYKQ--EN--------NILVFNAEYGNS------SVFLENSTFDEFGHSINDYSISPDGQFIL   77 (740)
T ss_dssp             CCCCCEEECSS---SEEEEEE--TT--------EEEEEETTTCCE------EEEECTTTTTTCCSCCCEEEECTTSSEEE
T ss_pred             ccccccEECCC---CcEEEEc--CC--------cEEEEECCCCce------EEEEechhhhhhcccccceEECCCCCEEE
Confidence            35678999996   4567765  67        899999888764      3445665532     24588999999999


Q ss_pred             EEecC---------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec
Q 024868           80 CSTTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (261)
Q Consensus        80 ~~~~d---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  150 (261)
                      .++.+         +.+++||+.+++.        .....+...+..++|||||+.||.+ .++.|++|++.+++..+..
T Consensus        78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~--------~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt  148 (740)
T 4a5s_A           78 LEYNYVKQWRHSYTASYDIYDLNKRQL--------ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT  148 (740)
T ss_dssp             EEEEEEECSSSCEEEEEEEEETTTTEE--------CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred             EEECCeeeEEEccceEEEEEECCCCcE--------EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEc
Confidence            88775         5677999988764        2223345678999999999999998 6789999999887754332


Q ss_pred             cccC-Cce-----------------eEEEEcCCCCEEEEecCCC------------------------------------
Q 024868          151 PKAH-KSV-----------------LDMDFSLDSEFLATTSTDG------------------------------------  176 (261)
Q Consensus       151 ~~~~-~~v-----------------~~~~~s~~~~~l~~~~~d~------------------------------------  176 (261)
                      .... ..+                 ..+.|||||++|+..+.|.                                    
T Consensus       149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~  228 (740)
T 4a5s_A          149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV  228 (740)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred             CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence            2221 122                 3589999999999875321                                    


Q ss_pred             cEEEEEccC---Cc--EEEEEee-----cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe----EE--eee
Q 024868          177 SARIWKTED---GV--AWTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KI--GHK  240 (261)
Q Consensus       177 ~i~iwd~~~---~~--~~~~~~~-----~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~~--~~~  240 (261)
                      .|++||+.+   ++  ....+..     .+...+..++|+|||+. +++.+...+.+..|++||+.+++    +.  ..+
T Consensus       229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~-~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l  307 (740)
T 4a5s_A          229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI-SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH  307 (740)
T ss_dssp             EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE-EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred             EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeE-EEEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence            488899988   73  2233332     13335889999999995 33333344566789999999887    22  111


Q ss_pred             --eccCcCee-----EEEEeeCCCEEe
Q 024868          241 --RLLRKPAS-----VLSISLDGKYLA  260 (261)
Q Consensus       241 --~~~~~~v~-----~~~~s~dg~~la  260 (261)
                        ..+...+.     .++|+|||+.|+
T Consensus       308 ~~~~~~~~v~~~~~~~p~fspDG~~l~  334 (740)
T 4a5s_A          308 IEMSTTGWVGRFRPSEPHFTLDGNSFY  334 (740)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred             eeccCCceEccCcCCCceEcCCCCEEE
Confidence              23444443     789999999776

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=1e-23  Score=179.89  Aligned_cols=224  Identities=14%  Similarity=0.129  Sum_probs=152.3

Q ss_pred             EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCC---CceEEEECCCCCeEEEEec--
Q 024868            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCSTT--   83 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~--   83 (261)
                      .++|+|+.   .+++.+ .++        .++.||..++..      ...+..|..   .+.+++|||||++|++++.  
T Consensus        20 ~~~~s~dg---~~~~~~-~d~--------~i~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~   81 (719)
T 1z68_A           20 FPNWISGQ---EYLHQS-ADN--------NIVLYNIETGQS------YTILSNRTMKSVNASNYGLSPDRQFVYLESDYS   81 (719)
T ss_dssp             CCEESSSS---EEEEEC-TTS--------CEEEEESSSCCE------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEE
T ss_pred             ccEECCCC---eEEEEc-CCC--------CEEEEEcCCCcE------EEEEccccccccceeeEEECCCCCeEEEEecCc
Confidence            67898863   444444 466        788999887764      333443332   4889999999999998876  


Q ss_pred             -------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-C
Q 024868           84 -------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-K  155 (261)
Q Consensus        84 -------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~  155 (261)
                             ++.|++||+.+++...      ...+  ...+..++|||||+.|+++ .++.|++|++.+++........+ .
T Consensus        82 ~~~~~s~~~~i~~~d~~~g~~~~------~~~l--~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~  152 (719)
T 1z68_A           82 KLWRYSYTATYYIYDLSNGEFVR------GNEL--PRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFNGREN  152 (719)
T ss_dssp             ECSSSCEEEEEEEEETTTTEECC------SSCC--CSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCCCBTT
T ss_pred             eeEEeecceEEEEEECCCCcccc------ceec--CcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecCCCcC
Confidence                   6899999998876310      0111  2457889999999999998 58899999998877643322221 1


Q ss_pred             ce-----------------eEEEEcCCCCEEEEecCCC----------------------------------cEEEEEcc
Q 024868          156 SV-----------------LDMDFSLDSEFLATTSTDG----------------------------------SARIWKTE  184 (261)
Q Consensus       156 ~v-----------------~~~~~s~~~~~l~~~~~d~----------------------------------~i~iwd~~  184 (261)
                      .+                 .+++|||||++|++++.|.                                  .|++||+.
T Consensus       153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~  232 (719)
T 1z68_A          153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT  232 (719)
T ss_dssp             TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred             CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence            12                 4899999999999887542                                  78899998


Q ss_pred             CCcEE--EEEee-----cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE----CCCCeEEeee----eccCcCee-
Q 024868          185 DGVAW--TFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD----ISTWNKIGHK----RLLRKPAS-  248 (261)
Q Consensus       185 ~~~~~--~~~~~-----~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d----~~~~~~~~~~----~~~~~~v~-  248 (261)
                      +++..  ..+..     .+...+..++|+||++.+ +...........|++||    +.+++.....    ..+...+. 
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~-~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~  311 (719)
T 1z68_A          233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC-LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGG  311 (719)
T ss_dssp             CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE-EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred             CCCccceeEccCCccCCCCcceEEEeEEeCCCeEE-EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcc
Confidence            87652  12211     123358999999997641 11001122235699999    8777765434    34555565 


Q ss_pred             ----EEEEeeCCCEEe
Q 024868          249 ----VLSISLDGKYLA  260 (261)
Q Consensus       249 ----~~~~s~dg~~la  260 (261)
                          .+.|+|||+.|+
T Consensus       312 ~~~~~~~~spdg~~l~  327 (719)
T 1z68_A          312 FFVSTPVFSYDAISYY  327 (719)
T ss_dssp             SSCCCCEECTTSSCEE
T ss_pred             ccCCccEECCCCCeEE
Confidence                889999999654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=1.2e-21  Score=152.95  Aligned_cols=217  Identities=13%  Similarity=0.038  Sum_probs=150.1

Q ss_pred             cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-CCceEEEECCCCCeEEE-EecCCcEEEEEEeCC
Q 024868           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVC-STTNGGCKLFEVYGG   95 (261)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~   95 (261)
                      +..++++++.++        .|+.||..+.+.      ...+..+. ..+..++|+|+++++++ ...++.|.+||+.++
T Consensus        10 ~~~~~v~~~~~~--------~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~   75 (349)
T 1jmx_B           10 GHEYMIVTNYPN--------NLHVVDVASDTV------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   75 (349)
T ss_dssp             TCEEEEEEETTT--------EEEEEETTTTEE------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCEEEEEeCCCC--------eEEEEECCCCcE------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence            356788888888        999999987764      22333222 25789999999987654 446789999999876


Q ss_pred             ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC------------CeEEEEEccCceEEe--eccccCCceeEEE
Q 024868           96 ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------------GHLRIMHWPSLRIIL--DEPKAHKSVLDMD  161 (261)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------~~i~~~d~~~~~~~~--~~~~~~~~v~~~~  161 (261)
                      +.......... .......+..++|+|||+++++++.+            +.|.+||+.+++...  ....+...+.+++
T Consensus        76 ~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  154 (349)
T 1jmx_B           76 KNTFHANLSSV-PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR  154 (349)
T ss_dssp             EEEEEEESCCS-TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE
T ss_pred             cEEEEEEcccc-cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccccee
Confidence            54221110000 00001236789999999999998765            899999998754322  1122334688999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC---------------------------------------------
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------------------------------------------  196 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------------------------------------  196 (261)
                      |+|+|+ +++++  +.|++||+.+++.+..+..+.                                             
T Consensus       155 ~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          155 AADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             ECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             ECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            999999 55554  349999999988777664331                                             


Q ss_pred             ----------------------CCceEEEEEec-CCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868          197 ----------------------DEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (261)
Q Consensus       197 ----------------------~~~v~~~~~~p-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  253 (261)
                                            ...+..++|+| +++++     +.+  ++.|++||+.+++.+..+.. ...+.+++|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l-----~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s  303 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-----YGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFD  303 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-----EEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEEC
T ss_pred             ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEE-----EEE--cCeEEEEECccCeEEEEEcC-CCCccceEEC
Confidence                                  01245677789 99873     333  78999999999988766553 3457899999


Q ss_pred             eCCCEEe
Q 024868          254 LDGKYLA  260 (261)
Q Consensus       254 ~dg~~la  260 (261)
                      |||++|+
T Consensus       304 ~dg~~l~  310 (349)
T 1jmx_B          304 KKGDKLY  310 (349)
T ss_dssp             SSSSCEE
T ss_pred             CCCCEEE
Confidence            9998876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=9.4e-22  Score=173.97  Aligned_cols=227  Identities=14%  Similarity=0.142  Sum_probs=167.7

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+.+.+++|+++    .++++++.++..      .+|.++..+...       ..+..|. .+..++|+|||+.|+++ .
T Consensus       203 ~~~v~~~~~s~d----~l~~~~~~dg~~------~l~~~~~~g~~~-------~~l~~~~-~~~~~~~SpDG~~la~~-~  263 (1045)
T 1k32_A          203 STHVSSPVIVGH----RIYFITDIDGFG------QIYSTDLDGKDL-------RKHTSFT-DYYPRHLNTDGRRILFS-K  263 (1045)
T ss_dssp             SSCCEEEEEETT----EEEEEECTTSSC------EEEEEETTSCSC-------EECCCCC-SSCEEEEEESSSCEEEE-E
T ss_pred             CCcccceEEeCC----EEEEEEeccCce------EEEEEeCCCCcc-------eEecCCC-CcceeeEcCCCCEEEEE-e
Confidence            456778888763    455566555533      889888765442       2344444 46778999999999887 5


Q ss_pred             CCcEEEEEEeCCccccceeeee-----CCCCCCCCCeEEEEEe-eCCcEEEEeccCCeEEEEEccCceEEeeccccCC-c
Q 024868           84 NGGCKLFEVYGGATDINLLAKK-----MPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-S  156 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~  156 (261)
                      ++.|++|++..... .. +...     .....+...+.+++|+ |||++|++++ ++.+++|++..++.. .+..+.. .
T Consensus       264 ~~~i~~~d~~~~~l-~~-l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~  339 (1045)
T 1k32_A          264 GGSIYIFNPDTEKI-EK-IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIR  339 (1045)
T ss_dssp             TTEEEEECTTTCCE-EE-CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEE
T ss_pred             CCEEEEecCCceEe-ee-eccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcce
Confidence            88999999843321 11 1000     0000122368899999 9999999886 889999999877654 4555666 7


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEE-EEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          157 VLDMDFSLDSEFLATTSTDGSAR-IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      +..++|+ ||+.|++++.++.+. +||+.+++... +..+ ...+..++|+|||++     ++.++.++.|++||+.+++
T Consensus       340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~-~~~~~~~~~SpDG~~-----la~~~~~~~v~~~d~~tg~  411 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN-LGNVFAMGVDRNGKF-----AVVANDRFEIMTVDLETGK  411 (1045)
T ss_dssp             EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCC-CCSEEEEEECTTSSE-----EEEEETTSEEEEEETTTCC
T ss_pred             EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCC-ccceeeeEECCCCCE-----EEEECCCCeEEEEECCCCc
Confidence            9999999 999999988888888 99998776543 4433 346999999999998     5677788999999999998


Q ss_pred             EEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          236 KIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .......+...+.+++|||||++||+
T Consensus       412 ~~~~~~~~~~~v~~~~~SpDG~~la~  437 (1045)
T 1k32_A          412 PTVIERSREAMITDFTISDNSRFIAY  437 (1045)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             eEEeccCCCCCccceEECCCCCeEEE
Confidence            77666678888999999999999873

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=1.7e-20  Score=146.31  Aligned_cols=205  Identities=15%  Similarity=0.124  Sum_probs=147.0

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC------CCCceEEEECCCCCeEE
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES------EGDPMTIAVNPSGDDFV   79 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~   79 (261)
                      .+..++|+|+.  ..+++++..++        .|+.||..+.+.      ...+..+      ...+..++|+|+|++|+
T Consensus        44 ~~~~~~~s~dg--~~~~v~~~~~~--------~i~~~d~~t~~~------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  107 (349)
T 1jmx_B           44 GPGTAMMAPDN--RTAYVLNNHYG--------DIYGIDLDTCKN------TFHANLSSVPGEVGRSMYSFAISPDGKEVY  107 (349)
T ss_dssp             SSCEEEECTTS--SEEEEEETTTT--------EEEEEETTTTEE------EEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             CCceeEECCCC--CEEEEEeCCCC--------cEEEEeCCCCcE------EEEEEcccccccccccccceEECCCCCEEE
Confidence            46678888753  44556666667        899999887664      2222211      22378899999999999


Q ss_pred             EEecC------------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE
Q 024868           80 CSTTN------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII  147 (261)
Q Consensus        80 ~~~~d------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~  147 (261)
                      +++.+            +.|.+||+.+++....     .....+...+.+++|+|+|+ +++++  +.|.+||..+++..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~  179 (349)
T 1jmx_B          108 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP-----VRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYT  179 (349)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-----SEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEE
T ss_pred             EEcccccccccccccCCCeEEEEECCCccccce-----eeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCcee
Confidence            88765            8999999987543111     11122234578899999999 55553  34999999887765


Q ss_pred             eeccccC--------------------------------------------------------------------CceeE
Q 024868          148 LDEPKAH--------------------------------------------------------------------KSVLD  159 (261)
Q Consensus       148 ~~~~~~~--------------------------------------------------------------------~~v~~  159 (261)
                      ..+..+.                                                                    ..+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (349)
T 1jmx_B          180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT  259 (349)
T ss_dssp             EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred             ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence            4433221                                                                    12456


Q ss_pred             EEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868          160 MDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (261)
Q Consensus       160 ~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  238 (261)
                      ++|+| ++++++++  ++.|.+||+.+++.+..+....  .+.+++|+|+|++     ++.++.++.|++||+++++.+.
T Consensus       260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~-----l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDK-----LYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS--CCCEEEECSSSSC-----EEEESBSSEEEEEETTTTEEEE
T ss_pred             eEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC--CccceEECCCCCE-----EEEecCCCeEEEEeccccceee
Confidence            77889 99999888  8899999999999888776433  4789999999998     3446778999999999999887


Q ss_pred             eeecc
Q 024868          239 HKRLL  243 (261)
Q Consensus       239 ~~~~~  243 (261)
                      .+...
T Consensus       331 ~~~~~  335 (349)
T 1jmx_B          331 NIKLP  335 (349)
T ss_dssp             EEECS
T ss_pred             eeecC
Confidence            76654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=7.9e-19  Score=137.87  Aligned_cols=183  Identities=13%  Similarity=0.155  Sum_probs=123.2

Q ss_pred             CceEEEECCCCCeEEEEec-CCcEEEEEEeCCcc----c-ccee-eeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeE
Q 024868           65 DPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGAT----D-INLL-AKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHL  136 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~----~-~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i  136 (261)
                      .+.+++|+|+|+++++++. ++.+.+|++.....    . .... ............+..++|+|||+++++++ .++.|
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            4588999999997766554 78999999986542    1 1000 00011222345678999999999887776 68999


Q ss_pred             EEEEccCceEE--eec---cccCCceeEEEEcCCCCEEEEecC--CCcEEEEEcc--CCc--EEEEEeecCCCceEEEEE
Q 024868          137 RIMHWPSLRII--LDE---PKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTE--DGV--AWTFLTRNSDEKIELCRF  205 (261)
Q Consensus       137 ~~~d~~~~~~~--~~~---~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~--~~~--~~~~~~~~~~~~v~~~~~  205 (261)
                      .+|++.+++..  ...   ..+......++|+|||++|+++..  ++.|.+|++.  +++  .+..+..  ...+..++|
T Consensus       236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~  313 (361)
T 3scy_A          236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFII  313 (361)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEE
T ss_pred             EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEE
Confidence            99999876531  111   222235689999999999877665  4899999996  455  3333433  335889999


Q ss_pred             ecCCCcceEEEEEeeCCCcEEEEE--ECCCCeEEeee-eccCcCeeEEEEe
Q 024868          206 SKDGTKPFLFCTVQRGDKALLAVY--DISTWNKIGHK-RLLRKPASVLSIS  253 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~~d~~i~~~--d~~~~~~~~~~-~~~~~~v~~~~~s  253 (261)
                      +|||+++    +++...++.|.+|  |..+++..... ..+...+.++.|.
T Consensus       314 spdg~~l----~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          314 TPNGKYL----LVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CTTSCEE----EEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCCCEE----EEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9999973    3445577899996  55567654332 2233567888886

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=7.3e-21  Score=158.63  Aligned_cols=216  Identities=14%  Similarity=0.103  Sum_probs=151.4

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcC--CCCceecCCeEEeeecCCCCCceEEEECCCCCeE-EEE
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP--KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCS   81 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~   81 (261)
                      ..|..++|+|+    .+++++..++   ......+|.++.  .+..       . .+... ..+...+|+|+|+.+ ++.
T Consensus        65 ~~~~~~~~spd----~~l~~~~~~~---g~~~~~l~~~~~~~~g~~-------~-~l~~~-~~~~~~~~s~dg~~~~~~s  128 (582)
T 3o4h_A           65 NSVLDPHYGVG----RVILVRDVSK---GAEQHALFKVNTSRPGEE-------Q-RLEAV-KPMRILSGVDTGEAVVFTG  128 (582)
T ss_dssp             SEECEECTTCS----EEEEEEECST---TSCCEEEEEEETTSTTCC-------E-ECTTS-CSBEEEEEEECSSCEEEEE
T ss_pred             cccccccCCCC----eEEEEeccCC---CCcceEEEEEeccCCCcc-------c-cccCC-CCceeeeeCCCCCeEEEEe
Confidence            47888999974    4555554311   122347888887  4433       1 22222 234466888888643 333


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC----CeEEEEEccCceEEeeccccCCce
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEPKAHKSV  157 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~v  157 (261)
                      ..++.+.+||+.+++.. .+.       .+..  .+++|||||++|++++.+    +.|++||+.+++.. .+..+...+
T Consensus       129 ~~~~~~~l~d~~~g~~~-~l~-------~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~  197 (582)
T 3o4h_A          129 ATEDRVALYALDGGGLR-ELA-------RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSF  197 (582)
T ss_dssp             ECSSCEEEEEEETTEEE-EEE-------EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEE
T ss_pred             cCCCCceEEEccCCcEE-Eee-------cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCcc
Confidence            44555779999887531 111       1112  789999999999988766    78999999887764 455666788


Q ss_pred             eEEEEcCCCCEEEEecCCC--cEEEEEccCCcEEEEEeecCCCceEEEE--------EecCCCcceEEEEEeeCCCcEEE
Q 024868          158 LDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCR--------FSKDGTKPFLFCTVQRGDKALLA  227 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~--------~~p~~~~~~~~~~~~~~~d~~i~  227 (261)
                      ..++|||||+.|+++..++  .|++||+.+++.. .+..+. ..+..++        |+|||+.     +++++.+++++
T Consensus       198 ~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~spdg~~-----~~~~~~~g~~~  270 (582)
T 3o4h_A          198 SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS-KDFSSYRPTAITWLGYLPDGRL-----AVVARREGRSA  270 (582)
T ss_dssp             EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC-SHHHHHCCSEEEEEEECTTSCE-----EEEEEETTEEE
T ss_pred             ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC-cChhhhhhccccceeEcCCCcE-----EEEEEcCCcEE
Confidence            9999999999999888888  8999999998877 554443 3455666        9999954     57778899999


Q ss_pred             EEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +|++  ++...   .....+.+++|+ ||++++
T Consensus       271 l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~  297 (582)
T 3o4h_A          271 VFID--GERVE---APQGNHGRVVLW-RGKLVT  297 (582)
T ss_dssp             EEET--TEEEC---CCSSEEEEEEEE-TTEEEE
T ss_pred             EEEE--CCeec---cCCCceEEEEec-CCEEEE
Confidence            9999  66543   334678899999 998775

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=2.5e-19  Score=141.00  Aligned_cols=210  Identities=10%  Similarity=0.067  Sum_probs=138.1

Q ss_pred             ceEEEEEcCCCCceecCCeEEeee-cCCCCCceEEEECCCCCeEEEEecCCcEEEEEEe-CCccccceeeeeCCCCCCCC
Q 024868           36 VLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY-GGATDINLLAKKMPPLQDAG  113 (261)
Q Consensus        36 ~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~~~~~~~~  113 (261)
                      .+.++.+|..++.+..    .... ......+..++|+|+|++|++++.+ .+.+|++. +++.. ......     ..+
T Consensus        15 ~i~~~~~d~~~g~l~~----~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-~~~~~~-----~~g   83 (365)
T 1jof_A           15 AIFTVQFDDEKLTCKL----IKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-HEASHP-----IGG   83 (365)
T ss_dssp             EEEEEEEETTTTEEEE----EEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-EEEEEE-----CCS
T ss_pred             cEEEEEEECCCCCEEE----eeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-EeeEee-----cCC
Confidence            4567777877766411    1111 1233468899999999999888887 89999997 55431 111110     112


Q ss_pred             CeEEEEEeeCCcE--EEEec-------------cCCeEEEEEccC-ceEEeecc----ccCCceeEEEEcCCCCEEEEec
Q 024868          114 PQKCLSFSVDGSR--FAAGG-------------VDGHLRIMHWPS-LRIILDEP----KAHKSVLDMDFSLDSEFLATTS  173 (261)
Q Consensus       114 ~v~~~~~s~~~~~--l~~~~-------------~d~~i~~~d~~~-~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~  173 (261)
                      .+..++|+|||++  +++++             .++.+.+|++.. ++......    .+...+.+++|+|||++++++.
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            2456899999994  45553             688999999973 54332221    1334789999999999888765


Q ss_pred             -CCCcEEEEEcc-CCcEEE--EEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC--CCeEE---eeeecc
Q 024868          174 -TDGSARIWKTE-DGVAWT--FLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKI---GHKRLL  243 (261)
Q Consensus       174 -~d~~i~iwd~~-~~~~~~--~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~--~~~~~---~~~~~~  243 (261)
                       .++.|++||+. +++...  .+... +...++.++|+|||+++    .++...++.|.+|++.  +++..   ..+...
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~  239 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYL----YALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEE----EEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence             46799999998 776532  23211 13358999999999973    2344557899999865  45532   112211


Q ss_pred             C------c-------CeeEEE-EeeCCCEEe
Q 024868          244 R------K-------PASVLS-ISLDGKYLA  260 (261)
Q Consensus       244 ~------~-------~v~~~~-~s~dg~~la  260 (261)
                      .      .       .+..++ |+|||++|+
T Consensus       240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~  270 (365)
T 1jof_A          240 PPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCcCCcccccccccccccEEEECCCCCEEE
Confidence            1      1       478899 999999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=2.1e-20  Score=148.05  Aligned_cols=227  Identities=8%  Similarity=-0.001  Sum_probs=146.1

Q ss_pred             EEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEE
Q 024868           10 GSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCK   88 (261)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   88 (261)
                      .+|+|+   ...++..+. ++..      ++|.+|..++..      .....++...+..+.|+|||+.|++++.++.++
T Consensus        41 ~~~SpD---g~~l~~~~~~~g~~------~l~~~d~~~g~~------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~  105 (388)
T 3pe7_A           41 KCFTRD---GSKLLFGGAFDGPW------NYYLLDLNTQVA------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLM  105 (388)
T ss_dssp             CCBCTT---SCEEEEEECTTSSC------EEEEEETTTCEE------EECCCSSCBCSSSCEECTTSSEEEEEETTTEEE
T ss_pred             ccCCCC---CCEEEEEEcCCCCc------eEEEEeCCCCce------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEE
Confidence            568886   345555444 4433      799999988764      444555555566788999999999999899999


Q ss_pred             EEEEeCCccccceeeeeCCCCCCCCCeEEE--EEeeCCcEEEEe----------------------ccCCeEEEEEccCc
Q 024868           89 LFEVYGGATDINLLAKKMPPLQDAGPQKCL--SFSVDGSRFAAG----------------------GVDGHLRIMHWPSL  144 (261)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~----------------------~~d~~i~~~d~~~~  144 (261)
                      +||+.+++.... ..      .+...+...  .++|++++++..                      ..+..|++||+.++
T Consensus       106 ~~d~~~g~~~~~-~~------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A          106 RVDLATLEENVV-YQ------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             EEETTTCCEEEE-EE------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             EEECCCCcceee-ee------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            999988764211 10      112223333  348899988742                      23467999999888


Q ss_pred             eEEeeccccCCceeEEEEcC-CCCEEEEecCC------CcEEEEEccCCcEEEEEeecCC-CceEEEEEecCCCcceEEE
Q 024868          145 RIILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFC  216 (261)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~  216 (261)
                      +.. .+..+...+..++|+| ||+.|+....+      ..|.++|...++. ..+..+.. ..+..++|+|||+.++...
T Consensus       179 ~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          179 EST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             CEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             ceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEe
Confidence            653 3445556789999999 99988876653      3788888766554 33433332 2477889999999842211


Q ss_pred             EEeeCCCcEEEEEECCCCeEEeeeeccC-----cCeeEEEEeeCCCEEe
Q 024868          217 TVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLA  260 (261)
Q Consensus       217 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~dg~~la  260 (261)
                      ...+..+..|++||+.+++.........     .....+.|+|||+.|+
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~  305 (388)
T 3pe7_A          257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAP  305 (388)
T ss_dssp             EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-
T ss_pred             cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcce
Confidence            1111223359999999887532222111     0122347999999876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=7.8e-20  Score=143.90  Aligned_cols=191  Identities=10%  Similarity=0.065  Sum_probs=125.5

Q ss_pred             CceEEEECCCCCe--EEEEe-------------cCCcEEEEEEeC-CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEE
Q 024868           65 DPMTIAVNPSGDD--FVCST-------------TNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA  128 (261)
Q Consensus        65 ~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  128 (261)
                      .+..++|+|+|++  +++++             .++.+.+|++.. +.. ......  ....+...+.+++|+|||++++
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~-~~~~~~--~~~~~~~~~~~~~~spdG~~l~  160 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL-EKNVQN--YEYQENTGIHGMVFDPTETYLY  160 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE-EEEEEE--EECCTTCCEEEEEECTTSSEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC-cceEee--EEeCCCCcceEEEECCCCCEEE
Confidence            3667899999995  44543             688999999974 332 111110  0012345789999999999888


Q ss_pred             Eec-cCCeEEEEEcc-CceEEe--ecc--ccCCceeEEEEcCCCCEEEEecC-CCcEEEEEcc--CCcEEE---EEeecC
Q 024868          129 AGG-VDGHLRIMHWP-SLRIIL--DEP--KAHKSVLDMDFSLDSEFLATTST-DGSARIWKTE--DGVAWT---FLTRNS  196 (261)
Q Consensus       129 ~~~-~d~~i~~~d~~-~~~~~~--~~~--~~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~--~~~~~~---~~~~~~  196 (261)
                      ++. .++.|++|++. +++...  ...  .+...+..++|+|||+++++++. ++.|.+|++.  +++...   .+....
T Consensus       161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~  240 (365)
T 1jof_A          161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence            765 46789999998 665421  221  12456899999999999887764 6899999875  565432   222110


Q ss_pred             ----C-C-------ceEEEE-EecCCCcceEEEEEeeCCC----cEEEEEECC-CCeEEee---eeccCcCeeEEEEee-
Q 024868          197 ----D-E-------KIELCR-FSKDGTKPFLFCTVQRGDK----ALLAVYDIS-TWNKIGH---KRLLRKPASVLSISL-  254 (261)
Q Consensus       197 ----~-~-------~v~~~~-~~p~~~~~~~~~~~~~~~d----~~i~~~d~~-~~~~~~~---~~~~~~~v~~~~~s~-  254 (261)
                          . .       .+..++ |+|||+++|   +...+.+    +.|.+|++. +++....   ...+...+..++|+| 
T Consensus       241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~---v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~  317 (365)
T 1jof_A          241 PGIPDRDPETGKGLYRADVCALTFSGKYMF---ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC  317 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEE---EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred             CCcCCcccccccccccccEEEECCCCCEEE---EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence                1 1       378899 999999742   1222222    289999996 5654321   223445567899999 


Q ss_pred             --CCCEEeC
Q 024868          255 --DGKYLAM  261 (261)
Q Consensus       255 --dg~~la~  261 (261)
                        ||++|++
T Consensus       318 ~~dg~~l~v  326 (365)
T 1jof_A          318 PWSDEWMAI  326 (365)
T ss_dssp             TTCTTEEEE
T ss_pred             CcCCCEEEE
Confidence              8999874

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=161.20  Aligned_cols=230  Identities=9%  Similarity=-0.041  Sum_probs=148.6

Q ss_pred             eeEEEEEeeCCcceEEEEecC---------CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCe
Q 024868            7 VTCGSWIKRPENVNLVVLGKS---------SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD   77 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (261)
                      |.+++|+|+   ...+++++.         ++        .++.||..+++....    ..+   ...+..++|||||+.
T Consensus        62 ~~~~~~SpD---g~~la~~~~~~~~~~~s~~~--------~i~~~d~~~g~~~~~----~~l---~~~~~~~~~SPDG~~  123 (719)
T 1z68_A           62 ASNYGLSPD---RQFVYLESDYSKLWRYSYTA--------TYYIYDLSNGEFVRG----NEL---PRPIQYLCWSPVGSK  123 (719)
T ss_dssp             CSEEEECTT---SSEEEEEEEEEECSSSCEEE--------EEEEEETTTTEECCS----SCC---CSSBCCEEECSSTTC
T ss_pred             eeeEEECCC---CCeEEEEecCceeEEeecce--------EEEEEECCCCccccc----eec---CcccccceECCCCCE
Confidence            789999996   456665544         34        899999887763100    112   246889999999999


Q ss_pred             EEEEecCCcEEEEEEeCCccccceeeeeCC-CC-CC---------CCCeEEEEEeeCCcEEEEeccCC------------
Q 024868           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMP-PL-QD---------AGPQKCLSFSVDGSRFAAGGVDG------------  134 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~-~~---------~~~v~~~~~s~~~~~l~~~~~d~------------  134 (261)
                      |+++. ++.|++|++.++............ .+ .+         .....+++|||||++|++++.|.            
T Consensus       124 la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~  202 (719)
T 1z68_A          124 LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG  202 (719)
T ss_dssp             EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC
T ss_pred             EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence            99875 778999999876542110000000 00 00         01225799999999999987542            


Q ss_pred             ----------------------eEEEEEccCceEE--ee------ccccCCceeEEEEcCCCCEEEEecCC----CcEEE
Q 024868          135 ----------------------HLRIMHWPSLRII--LD------EPKAHKSVLDMDFSLDSEFLATTSTD----GSARI  180 (261)
Q Consensus       135 ----------------------~i~~~d~~~~~~~--~~------~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~i  180 (261)
                                            .|++||+.+++..  ..      +..+...+..++|+||++++++....    ..|.+
T Consensus       203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~  282 (719)
T 1z68_A          203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSI  282 (719)
T ss_dssp             SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred             CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence                                  7889999877642  11      12344578999999998877764332    24888


Q ss_pred             EE----ccCCcEEEEEe---ecCCCceE-----EEEEecCCCcceEEEEEeeCC--CcEEEEEECCCCeEEeeeeccCcC
Q 024868          181 WK----TEDGVAWTFLT---RNSDEKIE-----LCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKP  246 (261)
Q Consensus       181 wd----~~~~~~~~~~~---~~~~~~v~-----~~~~~p~~~~~~~~~~~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~  246 (261)
                      ||    ..++++...+.   ..+...+.     .+.|+|||+.++   +.+...  ...|++||+.+++. ..+..+...
T Consensus       283 ~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~---~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~  358 (719)
T 1z68_A          283 CDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY---KIFSDKDGYKHIHYIKDTVENA-IQITSGKWE  358 (719)
T ss_dssp             EEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE---EEEECTTSCEEEEEESSCSTTC-EECSCSSSC
T ss_pred             EcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE---EEEEccCCceEEEEEECCCCce-EecccCceE
Confidence            99    77776554442   22333455     789999999732   123333  34788889877663 344445556


Q ss_pred             eeEEEEeeCCCEEe
Q 024868          247 ASVLSISLDGKYLA  260 (261)
Q Consensus       247 v~~~~~s~dg~~la  260 (261)
                      +..+.++ |++.|+
T Consensus       359 v~~~~~~-d~~~i~  371 (719)
T 1z68_A          359 AINIFRV-TQDSLF  371 (719)
T ss_dssp             EEEEEEE-CSSEEE
T ss_pred             EEEEEEE-eCCEEE
Confidence            7777777 777765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=5.8e-18  Score=131.32  Aligned_cols=241  Identities=12%  Similarity=0.116  Sum_probs=163.8

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCC----------------CCCceEEEEEcCCCCceecCCeEEeee-cCCCCCce
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASS----------------SPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPM   67 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~   67 (261)
                      +.+.++++.|+   .+++++...+....                +...-.|+.||..++.+      ...+ ..+-..+.
T Consensus        24 ~~v~~va~d~~---G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~p~   94 (329)
T 3fvz_A           24 GQVSGVALDSK---NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI------LQSSGKNLFYLPH   94 (329)
T ss_dssp             SCEEEEEECTT---CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE------EEEECTTTCSSEE
T ss_pred             CCceEEEECCC---CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE------EeccCCCccCCce
Confidence            56889999885   46677666552110                00001588899877664      2222 24446789


Q ss_pred             EEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeC---CCCCCCCCeEEEEEee-CCcEEEEec-cCCeEEEEEcc
Q 024868           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM---PPLQDAGPQKCLSFSV-DGSRFAAGG-VDGHLRIMHWP  142 (261)
Q Consensus        68 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~~-~d~~i~~~d~~  142 (261)
                      .++++|+|+.+++...++.|++|+..........+....   ....+......++++| +++++++.+ .++.|++|+ .
T Consensus        95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~  173 (329)
T 3fvz_A           95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-P  173 (329)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-T
T ss_pred             EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-C
Confidence            999999999888877789999999765421111111000   0011234678999999 788888875 689999999 5


Q ss_pred             CceEEeecccc----------CCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeec-CCCceEEEEEec---
Q 024868          143 SLRIILDEPKA----------HKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSK---  207 (261)
Q Consensus       143 ~~~~~~~~~~~----------~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p---  207 (261)
                      +++.+..+...          -.....++++|+ ++++++...++.|++||..+++.+..+... ....+..++|+|   
T Consensus       174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~  253 (329)
T 3fvz_A          174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFL  253 (329)
T ss_dssp             TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred             CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEE
Confidence            56654444221          123789999998 777788888899999999989988887532 233588899999   


Q ss_pred             ---CCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee---ccCcCeeEEEEeeCCCEEe
Q 024868          208 ---DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       208 ---~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~dg~~la  260 (261)
                         +|+.     .++...+..|++||..+++.+..+.   .+...+..++++|||+.++
T Consensus       254 ~~~~g~~-----~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyv  307 (329)
T 3fvz_A          254 FAVNGKP-----YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYI  307 (329)
T ss_dssp             EEEECCC-----CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEE
T ss_pred             EEeCCCE-----EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEE
Confidence               4432     2334455689999999999886653   3446688999999996554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=3.1e-19  Score=150.94  Aligned_cols=200  Identities=11%  Similarity=0.067  Sum_probs=133.5

Q ss_pred             EEEEEcCC--C-CceecCCeEEeeecC-----CCCCceEEEECCCCCeEEEEecC----------CcEEEEEEeC-----
Q 024868           38 EIFSFDPK--T-TSVYTSPLVTYVFDE-----SEGDPMTIAVNPSGDDFVCSTTN----------GGCKLFEVYG-----   94 (261)
Q Consensus        38 ~i~~~~~~--~-~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~~~~~-----   94 (261)
                      .||.++..  + +..       ..+..     |...+..++|+|||+.|++++.+          ..|++|++.+     
T Consensus       103 ~l~~~~~~~~g~~~~-------~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A          103 RLYAFEPDAPGGAVP-------RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             CEEEECTTSTTCCCC-------EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             eEEEEcCCCCCCCCC-------EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            78999876  3 331       12333     56678899999999999988776          5799999877     


Q ss_pred             -CccccceeeeeCCCC-CCCCCeEEEEEeeCCcEEEEeccC--------CeEEEEEcc-Cc--eEEeecccc-CCceeEE
Q 024868           95 -GATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWP-SL--RIILDEPKA-HKSVLDM  160 (261)
Q Consensus        95 -~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~-~~--~~~~~~~~~-~~~v~~~  160 (261)
                       +.. .       ... .+...+..++|||||++|++++.+        ..|++||+. ++  .....+... ...+..+
T Consensus       176 ~~~~-~-------~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~  247 (662)
T 3azo_A          176 RSAV-R-------ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA  247 (662)
T ss_dssp             GGGS-E-------ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred             CCce-e-------EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence             332 1       111 234567788999999999987754        379999998 56  122333333 4678999


Q ss_pred             EEcCCCCEEEEecCCC--cEEEEEccCCcEEEEEeecCCC-------ceEEEEEecCCCcceEEEEEeeCCCcEEEEE--
Q 024868          161 DFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLTRNSDE-------KIELCRFSKDGTKPFLFCTVQRGDKALLAVY--  229 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~--  229 (261)
                      .|+|||++++++..++  .|++||+.+++.......+...       .+..++|+|+++.     ++++.. +.+++|  
T Consensus       248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~-----~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI-----AVVHGK-GAAVLGIL  321 (662)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE-----EEEEBS-SSCEEEEE
T ss_pred             EECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEE-----EEEEEc-CccEEEEE
Confidence            9999999878887788  5666666667654433322111       0457888999886     455555 777777  


Q ss_pred             ECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          230 DISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      |+.+++ +..+..+...+..+ ++++++.++
T Consensus       322 d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~  350 (662)
T 3azo_A          322 DPESGE-LVDAAGPWTEWAAT-LTVSGTRAV  350 (662)
T ss_dssp             ETTTTE-EEECCSSCCEEEEE-EEEETTEEE
T ss_pred             ECCCCc-EEEecCCCCeEEEE-EecCCCEEE
Confidence            666665 44555555556555 266666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=1e-18  Score=138.34  Aligned_cols=227  Identities=12%  Similarity=0.020  Sum_probs=145.5

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEE--ECCCCCeEEEEe--
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA--VNPSGDDFVCST--   82 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~--   82 (261)
                      ++.++|+|+   ...++.+..++        .++.||..+++.      ......+...+....  ++|+++.++...  
T Consensus        83 ~~~~~~spd---g~~l~~~~~~~--------~l~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~  145 (388)
T 3pe7_A           83 TFGGFLSPD---DDALFYVKDGR--------NLMRVDLATLEE------NVVYQVPAEWVGYGTWVANSDCTKLVGIEIR  145 (388)
T ss_dssp             SSSCEECTT---SSEEEEEETTT--------EEEEEETTTCCE------EEEEECCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred             ccceEEcCC---CCEEEEEeCCC--------eEEEEECCCCcc------eeeeechhhcccccceeECCCCCeecccccc
Confidence            345678886   45677766666        899999987764      333444555444333  489999887432  


Q ss_pred             --------------------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccC------Ce
Q 024868           83 --------------------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD------GH  135 (261)
Q Consensus        83 --------------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------~~  135 (261)
                                          .+..|++||+.+++. ..+       ..+...+..++|+| ||+.|+....+      ..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l-------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (388)
T 3pe7_A          146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVI-------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR  217 (388)
T ss_dssp             GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEE-------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred             CcccccccccchhhhhhccCCcceEEEEECCCCce-EEe-------ecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence                                336788899887653 111       12345688999999 99998877643      37


Q ss_pred             EEEEEccCceEEeeccccC--CceeEEEEcCCCCEEEEecC-CC----cEEEEEccCCcEEEEEeecCC----CceEEEE
Q 024868          136 LRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTST-DG----SARIWKTEDGVAWTFLTRNSD----EKIELCR  204 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~----~~v~~~~  204 (261)
                      |.++|...++. ..+..+.  ..+..+.|+|||+.|+..+. ++    .|++||+.+++..........    ......+
T Consensus       218 l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~  296 (388)
T 3pe7_A          218 MWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL  296 (388)
T ss_dssp             EEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred             EEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence            88888765554 3333333  25788999999998766443 22    399999998875433221110    0011237


Q ss_pred             EecCCCcceEEEEE-----eeCCCcEEEEEECCCCeEEeeeeccCc-----------CeeEEEEeeCCCEEeC
Q 024868          205 FSKDGTKPFLFCTV-----QRGDKALLAVYDISTWNKIGHKRLLRK-----------PASVLSISLDGKYLAM  261 (261)
Q Consensus       205 ~~p~~~~~~~~~~~-----~~~~d~~i~~~d~~~~~~~~~~~~~~~-----------~v~~~~~s~dg~~la~  261 (261)
                      |+|||+.+++. ..     ....+..|++||+.+++.. .+..+..           .+.+++|+|||++|++
T Consensus       297 ~spdg~~l~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~  367 (388)
T 3pe7_A          297 MVGDGSDAPVD-VQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF  367 (388)
T ss_dssp             EEEEECCC-------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             EccCCCcceeE-eeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence            99999984211 10     1255678999999987754 3444444           4788999999998873

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=1.4e-18  Score=146.86  Aligned_cols=228  Identities=14%  Similarity=0.045  Sum_probs=146.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEe--cCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCce---------EEEEC
Q 024868            4 GGTVTCGSWIKRPENVNLVVLG--KSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPM---------TIAVN   72 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~   72 (261)
                      +..|..++|+++   ..+++.+  +.++      ...||.... ++.       ...+..|...+.         ...|+
T Consensus        23 ~~~~~~~~~s~~---~~~~~~~~~~~~~------~~~l~~~~~-~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (662)
T 3azo_A           23 SGRPACVGAVGD---EVWWVAPRPAEAG------RATLVRRRA-DGA-------EESALPAPWNVRNRVFEYSGFPWAGV   85 (662)
T ss_dssp             CSCCEEEEEETT---EEEEEEEETTTTT------EEEEEEECT-TSC-------EEESSCTTCCBCCCGGGTCCCCEEEE
T ss_pred             CCccceeEEcCC---eEEEEecCcccCC------cEEEEEECC-CCC-------cceeCCCCccccccccccCCccceee
Confidence            456788888863   3444444  2233      236676632 222       234455555554         55565


Q ss_pred             --CCCCe-EEEEec-CCcEEEEEEe--C-CccccceeeeeCCCCC---CCCCeEEEEEeeCCcEEEEeccC---------
Q 024868           73 --PSGDD-FVCSTT-NGGCKLFEVY--G-GATDINLLAKKMPPLQ---DAGPQKCLSFSVDGSRFAAGGVD---------  133 (261)
Q Consensus        73 --~~~~~-l~~~~~-dg~i~i~~~~--~-~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d---------  133 (261)
                        |||+. |+.++. +..|+++++.  + +.. ..     +....   +...+..++|+|||+.|++++.+         
T Consensus        86 ~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~-----l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           86 PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RP-----LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EE-----CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             eecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-Ee-----ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence              99998 776654 4455555554  2 221 11     11111   34567899999999999988766         


Q ss_pred             -CeEEEEEccC------ceEEeecc-ccCCceeEEEEcCCCCEEEEecCC--------CcEEEEEcc-CC--cEEEEEee
Q 024868          134 -GHLRIMHWPS------LRIILDEP-KAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTE-DG--VAWTFLTR  194 (261)
Q Consensus       134 -~~i~~~d~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~iwd~~-~~--~~~~~~~~  194 (261)
                       ..|++||+.+      ++. ..+. .+...+..++|||||++|+.++.+        ..|++||+. ++  .....+..
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~  238 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG  238 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence             5799999987      554 3444 455678889999999999877644        379999998 56  13334443


Q ss_pred             cCCCceEEEEEecCCCcceEEEEEeeCCCc--EEEEEECCCCeEEeeeeccCcC--------eeEEEEeeCCCEEe
Q 024868          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKP--------ASVLSISLDGKYLA  260 (261)
Q Consensus       195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~--------v~~~~~s~dg~~la  260 (261)
                      .....+..++|+|||+.     ++++..++  .|++||+.+++.......+...        +..++|+|++++++
T Consensus       239 ~~~~~~~~~~~spdg~l-----~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~  309 (662)
T 3azo_A          239 GPEEAIAQAEWAPDGSL-----IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV  309 (662)
T ss_dssp             ETTBCEEEEEECTTSCE-----EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred             CCCceEcceEECCCCeE-----EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence            33345899999999994     45666667  7888887777654333322211        46788999998775

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=4.5e-18  Score=133.53  Aligned_cols=202  Identities=9%  Similarity=0.032  Sum_probs=142.0

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec----------CCcEEEEEEeCCccccceeeeeCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMP  107 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~  107 (261)
                      .++.||..+.++      ...++.+..+  .++|+|||+++++++.          ++.|.+||..+.+....+... ..
T Consensus        32 ~v~v~D~~t~~~------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~-~~  102 (361)
T 2oiz_A           32 RVHVYDYTNGKF------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP-PK  102 (361)
T ss_dssp             EEEEEETTTCCE------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC-TT
T ss_pred             eEEEEECCCCeE------EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC-cc
Confidence            788899877765      2344444444  8999999999988763          567999998766542222111 01


Q ss_pred             CCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEccCceEEee-ccc-------------------------------c
Q 024868          108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILD-EPK-------------------------------A  153 (261)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~-------------------------------~  153 (261)
                      ...+......++++|||++|+++..  ++.|.+||+.+++.+.. +..                               .
T Consensus       103 ~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~  182 (361)
T 2oiz_A          103 RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGE  182 (361)
T ss_dssp             BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred             ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence            1112245677999999999998864  57899999876655433 100                               0


Q ss_pred             CCc-------------------------------------e---------------------------------eEEEEc
Q 024868          154 HKS-------------------------------------V---------------------------------LDMDFS  163 (261)
Q Consensus       154 ~~~-------------------------------------v---------------------------------~~~~~s  163 (261)
                      .+.                                     +                                 ..++|+
T Consensus       183 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~  262 (361)
T 2oiz_A          183 DGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH  262 (361)
T ss_dssp             TSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred             CCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence            000                                     0                                 015778


Q ss_pred             CCCCEEEEecC-----------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          164 LDSEFLATTST-----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       164 ~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      |+++.++++..           .+.|.+||+.+++.+.++..+.   +.+++|+|||++     +++++. +.|.+||+.
T Consensus       263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~-----l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNL-----MLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTE-----EEEECS-SCEEEEECS
T ss_pred             cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCE-----EEEeCC-CeEEEEECC
Confidence            88777766532           3479999999999999988654   889999999997     344555 899999999


Q ss_pred             CC--eEEeeeeccCcCeeEEEEeeCCC
Q 024868          233 TW--NKIGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       233 ~~--~~~~~~~~~~~~v~~~~~s~dg~  257 (261)
                      ++  +.+..+...+.....++++|||+
T Consensus       334 t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          334 QPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99  88877656677788999999996

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=7.5e-19  Score=150.34  Aligned_cols=190  Identities=9%  Similarity=-0.025  Sum_probs=129.4

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC---------C
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------G  134 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------~  134 (261)
                      .....++|+|||++++++  |++|++||+.+++.... +.... ..........+.|||||++|++++.+         +
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-LENST-FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-ECTTT-TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEE-Eechh-hhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            346689999999888875  89999999988875221 11110 00111233568999999999998765         5


Q ss_pred             eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC----------------
Q 024868          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE----------------  198 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------  198 (261)
                      .+++||+.+++.. .+..+...+..++|||||+.||.+. ++.|++||+.+++..+........                
T Consensus        93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            6789999988763 4555566899999999999999885 689999999888755432211111                


Q ss_pred             -ceEEEEEecCCCcceEEEEEe-----------------------------e--CCCcEEEEEECCC---C---eEEeee
Q 024868          199 -KIELCRFSKDGTKPFLFCTVQ-----------------------------R--GDKALLAVYDIST---W---NKIGHK  240 (261)
Q Consensus       199 -~v~~~~~~p~~~~~~~~~~~~-----------------------------~--~~d~~i~~~d~~~---~---~~~~~~  240 (261)
                       ....+.|||||+++.....-.                             +  ....+|++||+.+   +   +.. .+
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l  249 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QI  249 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EE
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-Ee
Confidence             123589999999842211000                             0  0112689999998   7   333 23


Q ss_pred             ec------cCcCeeEEEEeeCCCEEe
Q 024868          241 RL------LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       241 ~~------~~~~v~~~~~s~dg~~la  260 (261)
                      ..      +...+..++|||||+.++
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~  275 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISL  275 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEE
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEE
Confidence            22      556789999999999654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=5.7e-17  Score=123.85  Aligned_cols=222  Identities=10%  Similarity=0.065  Sum_probs=153.2

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      -..+++|.|+  +..+++++..++        .|+.|++.+. .      . .+..+...+.+++++|+|+.+++...++
T Consensus        29 ~~eg~~~d~~--g~~l~~~~~~~~--------~i~~~~~~~~-~------~-~~~~~~~~~~~l~~~~dg~l~v~~~~~~   90 (296)
T 3e5z_A           29 WTEGPVYVPA--RSAVIFSDVRQN--------RTWAWSDDGQ-L------S-PEMHPSHHQNGHCLNKQGHLIACSHGLR   90 (296)
T ss_dssp             SEEEEEEEGG--GTEEEEEEGGGT--------EEEEEETTSC-E------E-EEESSCSSEEEEEECTTCCEEEEETTTT
T ss_pred             cccCCeEeCC--CCEEEEEeCCCC--------EEEEEECCCC-e------E-EEECCCCCcceeeECCCCcEEEEecCCC
Confidence            3467889885  244777887777        8999998875 3      1 2344667799999999999877766678


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE----ec-------------cCCeEEEEEccCceEEe
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GG-------------VDGHLRIMHWPSLRIIL  148 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~-------------~d~~i~~~d~~~~~~~~  148 (261)
                      .|.+||..+++... .....  .......+..++++|+|+++++    +.             ..+.|..++.. ++. .
T Consensus        91 ~i~~~d~~~g~~~~-~~~~~--~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~  165 (296)
T 3e5z_A           91 RLERQREPGGEWES-IADSF--EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-S  165 (296)
T ss_dssp             EEEEECSTTCCEEE-EECEE--TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-E
T ss_pred             eEEEEcCCCCcEEE-Eeecc--CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-E
Confidence            89999987665311 11110  0011235678999999998887    32             13456666654 433 3


Q ss_pred             eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcE---EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCc
Q 024868          149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (261)
Q Consensus       149 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~  224 (261)
                      ....+......++|+|+++.+++.+.++.|++||+. +++.   ...+ ......+.+++++++|+.     .++.  ++
T Consensus       166 ~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l-----~v~~--~~  237 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLI-----WASA--GD  237 (296)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCE-----EEEE--TT
T ss_pred             EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCE-----EEEc--CC
Confidence            334444567899999999988777788999999997 5554   3333 223334678999999985     2333  67


Q ss_pred             EEEEEECCCCeEEeeeeccCcCeeEEEE-eeCCCEEe
Q 024868          225 LLAVYDISTWNKIGHKRLLRKPASVLSI-SLDGKYLA  260 (261)
Q Consensus       225 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~-s~dg~~la  260 (261)
                      .|.+||.. ++.+..+..+.. +.+++| +||++.|.
T Consensus       238 ~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~  272 (296)
T 3e5z_A          238 GVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLY  272 (296)
T ss_dssp             EEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEE
T ss_pred             eEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEE
Confidence            89999986 677666666666 899999 58888765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.80  E-value=1.9e-16  Score=122.86  Aligned_cols=226  Identities=17%  Similarity=0.167  Sum_probs=150.7

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-   84 (261)
                      .+.+++|.++   ..+++++..++        .|+.||+.++.+      ......+...+.+++++|+|+.+++...+ 
T Consensus        46 ~~~~~~~~~~---g~l~~~~~~~~--------~i~~~d~~~~~~------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~  108 (333)
T 2dg1_A           46 QLEGLNFDRQ---GQLFLLDVFEG--------NIFKINPETKEI------KRPFVSHKANPAAIKIHKDGRLFVCYLGDF  108 (333)
T ss_dssp             CEEEEEECTT---SCEEEEETTTC--------EEEEECTTTCCE------EEEEECSSSSEEEEEECTTSCEEEEECTTS
T ss_pred             cccCcEECCC---CCEEEEECCCC--------EEEEEeCCCCcE------EEEeeCCCCCcceEEECCCCcEEEEeCCCC
Confidence            3577888764   45777777777        899999887664      22232456789999999999877776655 


Q ss_pred             ---CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc------CCeEEEEEccCceEEeeccccCC
Q 024868           85 ---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHK  155 (261)
Q Consensus        85 ---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~  155 (261)
                         +.|.+||..++.... ..    ........+.+++++|+|+++++...      .+.|..+|..+++.. .+.....
T Consensus       109 ~~~~~i~~~d~~~~~~~~-~~----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~  182 (333)
T 2dg1_A          109 KSTGGIFAATENGDNLQD-II----EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNIS  182 (333)
T ss_dssp             SSCCEEEEECTTSCSCEE-EE----CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEES
T ss_pred             CCCceEEEEeCCCCEEEE-EE----ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCC
Confidence               579999987665321 11    11122457899999999988776643      355666765544432 2222334


Q ss_pred             ceeEEEEcCCCCEEE-EecCCCcEEEEEccC-CcEEEEE-----ee-cCCCceEEEEEecCCCcceEEEEEeeCCCcEEE
Q 024868          156 SVLDMDFSLDSEFLA-TTSTDGSARIWKTED-GVAWTFL-----TR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~-~~~~d~~i~iwd~~~-~~~~~~~-----~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~  227 (261)
                      .+..++|+|+|+.++ +.+.++.|.+||+.+ ++....+     .. .....+..++++++|+.     .++...++.|.
T Consensus       183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l-----~v~~~~~~~v~  257 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL-----YVAMYGQGRVL  257 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE-----EEEEETTTEEE
T ss_pred             cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCE-----EEEEcCCCEEE
Confidence            578899999998654 445678999999964 3332211     11 11124788999999985     34555567899


Q ss_pred             EEECCCCeEEeeeeccCc------CeeEEEEeeCCCEEe
Q 024868          228 VYDISTWNKIGHKRLLRK------PASVLSISLDGKYLA  260 (261)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~------~v~~~~~s~dg~~la  260 (261)
                      +||. +++.+..+.....      .+.+++|+||++.|.
T Consensus       258 ~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~  295 (333)
T 2dg1_A          258 VFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  295 (333)
T ss_dssp             EECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             EECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEE
Confidence            9998 4666555554432      578999999987664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=2.6e-16  Score=119.54  Aligned_cols=224  Identities=10%  Similarity=0.047  Sum_probs=152.5

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee----cCCCCCceEEEE-CCCCCeEEE
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF----DESEGDPMTIAV-NPSGDDFVC   80 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~-~~~~~~l~~   80 (261)
                      .+.++++.++   ..++++...++        .|..||++....     .....    .++...+..+++ .++++.+++
T Consensus        31 ~p~~v~~~~~---g~l~v~~~~~~--------~i~~~d~~g~~~-----~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~   94 (286)
T 1q7f_A           31 EPSGVAVNAQ---NDIIVADTNNH--------RIQIFDKEGRFK-----FQFGECGKRDSQLLYPNRVAVVRNSGDIIVT   94 (286)
T ss_dssp             CEEEEEECTT---CCEEEEEGGGT--------EEEEECTTSCEE-----EEECCBSSSTTCBSSEEEEEEETTTTEEEEE
T ss_pred             CCceEEECCC---CCEEEEECCCC--------EEEEECCCCcEE-----EEecccCCCcccccCceEEEEEcCCCeEEEE
Confidence            4677888764   45777766677        899999875432     11111    124457889999 577776666


Q ss_pred             Eec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc--ccCCce
Q 024868           81 STT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--KAHKSV  157 (261)
Q Consensus        81 ~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v  157 (261)
                      ... ++.|++|+. ++.....     . .......+.+++++|+|+++++...++.|.+||.. ++....+.  .+...+
T Consensus        95 ~~~~~~~i~~~d~-~g~~~~~-----~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p  166 (286)
T 1q7f_A           95 ERSPTHQIQIYNQ-YGQFVRK-----F-GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP  166 (286)
T ss_dssp             ECGGGCEEEEECT-TSCEEEE-----E-CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred             cCCCCCEEEEECC-CCcEEEE-----e-cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCc
Confidence            533 788999993 3332111     1 11223567899999999988887778999999954 44433332  223468


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCc-EEEEEECCCCe
Q 024868          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKA-LLAVYDISTWN  235 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~-~i~~~d~~~~~  235 (261)
                      ..++++|+|+++++...++.|++||. +++.+..+.... ...+..++++|+|+.     .++...++ .|.+||. +++
T Consensus       167 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l-----~v~~~~~~~~i~~~~~-~g~  239 (286)
T 1q7f_A          167 NGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEI-----LIADNHNNFNLTIFTQ-DGQ  239 (286)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCE-----EEEECSSSCEEEEECT-TSC
T ss_pred             EEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCE-----EEEeCCCCEEEEEECC-CCC
Confidence            99999999998888888899999997 456666664332 135889999999975     45566665 9999996 456


Q ss_pred             EEeeeeccC--cCeeEEEEeeCCCEEe
Q 024868          236 KIGHKRLLR--KPASVLSISLDGKYLA  260 (261)
Q Consensus       236 ~~~~~~~~~--~~v~~~~~s~dg~~la  260 (261)
                      .+..+..+.  ..+.+++++|+|++++
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~g~l~v  266 (286)
T 1q7f_A          240 LISALESKVKHAQCFDVALMDDGSVVL  266 (286)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEE
T ss_pred             EEEEEcccCCCCcceeEEECCCCcEEE
Confidence            655555433  2467899999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=5.1e-18  Score=134.59  Aligned_cols=226  Identities=7%  Similarity=0.005  Sum_probs=139.6

Q ss_pred             eeEEEEEeeCCcceEEEEe-cCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCC-ceEEEECCCCCeEEEEecC
Q 024868            7 VTCGSWIKRPENVNLVVLG-KSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d   84 (261)
                      +..++|+|+   ...++.. ..++..      .++.+|..++..      . .+..+... ...+.|+|||++|+..+.+
T Consensus        38 ~~~~~~Spd---G~~l~~~~~~~g~~------~l~~~d~~~~~~------~-~l~~~~~~~~~~~~~spdg~~l~~~~~~  101 (396)
T 3c5m_A           38 FYQKCFTQD---GKKLLFAGDFDGNR------NYYLLNLETQQA------V-QLTEGKGDNTFGGFISTDERAFFYVKNE  101 (396)
T ss_dssp             TTSCCBCTT---SCEEEEEECTTSSC------EEEEEETTTTEE------E-ECCCSSCBCTTTCEECTTSSEEEEEETT
T ss_pred             eecCcCCCC---CCEEEEEEecCCCc------eEEEEECCCCcE------E-EeecCCCCccccceECCCCCEEEEEEcC
Confidence            556678875   3344433 332322      789999877663      2 23333333 3348899999999999888


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEE-------------------EEEeeCCcEEEEe-----ccCCeEEEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-------------------LSFSVDGSRFAAG-----GVDGHLRIMH  140 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~d~~i~~~d  140 (261)
                      +.|++|++.+++... +....      ......                   +.|+|+++.++..     ..+..|++||
T Consensus       102 ~~l~~~d~~~~~~~~-~~~~~------~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d  174 (396)
T 3c5m_A          102 LNLMKVDLETLEEQV-IYTVD------EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVD  174 (396)
T ss_dssp             TEEEEEETTTCCEEE-EEECC------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred             CcEEEEECCCCCcEE-EEecc------cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEE
Confidence            899999998765311 11100      111111                   3456777666544     3556899999


Q ss_pred             ccCceEEeeccccCCceeEEEEcC-CCCEEEEecCC------CcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcc
Q 024868          141 WPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKP  212 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~  212 (261)
                      +.+++... +..+...+..+.|+| +++.|+..+.+      ..|.+||+..++.. .+..+. ...+..++|+|||+++
T Consensus       175 ~~~g~~~~-~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l  252 (396)
T 3c5m_A          175 IETGELEV-IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAM  252 (396)
T ss_dssp             TTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCE
T ss_pred             CCCCcEEe-eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEE
Confidence            98877543 334556789999999 78877765543      46888998766543 333222 2247889999999983


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee-CCCEEe
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKYLA  260 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la  260 (261)
                      +......+..++.|++||+.+++...... ... .. +.|+| ||++|+
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~  298 (396)
T 3c5m_A          253 AYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMV  298 (396)
T ss_dssp             EEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEE
T ss_pred             EEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEE
Confidence            22111111122569999999887543222 222 23 89999 999876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=1.3e-16  Score=135.96  Aligned_cols=234  Identities=9%  Similarity=-0.038  Sum_probs=153.6

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+..++|+|+   ..+++.+..++  | .....|+.+|..+++...     ..+..  ..+..++|+|||+.|+.++.+
T Consensus       125 ~~~~~~~~SPD---g~~la~~~~~~--G-~~~~~i~v~d~~tg~~~~-----~~~~~--~~~~~~~wspDg~~l~~~~~~  191 (710)
T 2xdw_A          125 VALRGYAFSED---GEYFAYGLSAS--G-SDWVTIKFMKVDGAKELP-----DVLER--VKFSCMAWTHDGKGMFYNAYP  191 (710)
T ss_dssp             EEEEEEEECTT---SSEEEEEEEET--T-CSCEEEEEEETTTTEEEE-----EEEEE--ECSCCEEECTTSSEEEEEECC
T ss_pred             EEEEEEEECCC---CCEEEEEEcCC--C-CceEEEEEEECCCCCCCc-----ccccC--cccceEEEEeCCCEEEEEEEC
Confidence            35778899986   44566544322  1 122378999998877411     11221  236789999999999988877


Q ss_pred             Cc----------------EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-----CCeEEEEEccC
Q 024868           85 GG----------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPS  143 (261)
Q Consensus        85 g~----------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~~  143 (261)
                      +.                |++|++.++.....++.   ....+...+..+.|+|||++|+..+.     +..|++||+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA---EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE---CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             CccccccccccccCCCCEEEEEECCCCcccceEEe---ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence            65                99999977653211111   11112345788999999999888764     56899999976


Q ss_pred             ------ce-EEeeccccCCceeEEEEcCCCCEEEEecCC----CcEEEEEccCCc--EEEEEeecCC-CceEEEEEecCC
Q 024868          144 ------LR-IILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGV--AWTFLTRNSD-EKIELCRFSKDG  209 (261)
Q Consensus       144 ------~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~iwd~~~~~--~~~~~~~~~~-~~v~~~~~~p~~  209 (261)
                            +. ....+..+...+.. .|+|+|+.|+..+..    ..|.+||+.+++  ....+..+.. ..+..++|++++
T Consensus       269 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  347 (710)
T 2xdw_A          269 ESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN  347 (710)
T ss_dssp             SSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred             cccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence                  42 23334444444444 488999887766543    369999998764  2344444433 358889998666


Q ss_pred             CcceEEEEEeeCCCc--EEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          210 TKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       210 ~~~~~~~~~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ..     +++...++  .|++||+.+++.+..+..+...+..++++|+++.|+
T Consensus       348 ~l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          348 FL-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             EE-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             EE-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence            54     34555555  577888877776666666677788899999998665

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.77  E-value=4e-16  Score=117.79  Aligned_cols=210  Identities=12%  Similarity=0.119  Sum_probs=155.3

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCC-CCceEEEECCCCCeEEEEecCCcEEEEEEeCCcc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT   97 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~   97 (261)
                      .+++++++.++        .|..||..+++.      ...+..+. ..+.++.++|+|+.++  +.++.|+.||. +++.
T Consensus         5 ~~~lv~~~~~~--------~v~~~d~~tG~~------~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~   67 (276)
T 3no2_A            5 QHLLVGGSGWN--------KIAIINKDTKEI------VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE   67 (276)
T ss_dssp             CEEEEECTTCS--------EEEEEETTTTEE------EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE
T ss_pred             CcEEEeeCCCC--------EEEEEECCCCeE------EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE
Confidence            57899999999        999999978776      44455444 4688999999999888  34667998888 5543


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CCeEEEEEccCceEEeecc------ccCCceeEEEEcCCCCEEE
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEP------KAHKSVLDMDFSLDSEFLA  170 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~  170 (261)
                      ..+...      .....+.++.+.|+|+.+++.+. ++.+..+|. +++.+..+.      .++.....+++.++|++++
T Consensus        68 ~W~~~~------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv  140 (276)
T 3no2_A           68 LWNIAA------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV  140 (276)
T ss_dssp             EEEEEC------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE
T ss_pred             EEEEcC------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEE
Confidence            222211      11235788899999999998776 777887874 666554432      1222455677899999999


Q ss_pred             EecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC------
Q 024868          171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------  244 (261)
Q Consensus       171 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~------  244 (261)
                      +...++.|..||.+ |+.+.++....  .+.++...++|+.     ++++..++.|..+|..+|+.+..+....      
T Consensus       141 ~~~~~~~v~~~d~~-G~~~w~~~~~~--~~~~~~~~~~g~~-----~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l  212 (276)
T 3no2_A          141 PLFATSEVREIAPN-GQLLNSVKLSG--TPFSSAFLDNGDC-----LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQL  212 (276)
T ss_dssp             EETTTTEEEEECTT-SCEEEEEECSS--CCCEEEECTTSCE-----EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCC
T ss_pred             EecCCCEEEEECCC-CCEEEEEECCC--CccceeEcCCCCE-----EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccc
Confidence            99999999999988 99988887542  3667788899987     5666777789999999999887665332      


Q ss_pred             cCeeEEEEeeCCCEEe
Q 024868          245 KPASVLSISLDGKYLA  260 (261)
Q Consensus       245 ~~v~~~~~s~dg~~la  260 (261)
                      ..+..++..++|+.++
T Consensus       213 ~~~~~~~~~~~G~i~v  228 (276)
T 3no2_A          213 FFVAQLFPLQNGGLYI  228 (276)
T ss_dssp             SEEEEEEECTTSCEEE
T ss_pred             cccccceEcCCCCEEE
Confidence            2267777888887765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=3.3e-18  Score=135.64  Aligned_cols=217  Identities=10%  Similarity=-0.029  Sum_probs=139.5

Q ss_pred             EEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceE-------------------EE
Q 024868           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT-------------------IA   70 (261)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~   70 (261)
                      ++|+|+   ...++....++        .++.+|..++..      ......+......                   +.
T Consensus        86 ~~~spd---g~~l~~~~~~~--------~l~~~d~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  148 (396)
T 3c5m_A           86 GFISTD---ERAFFYVKNEL--------NLMKVDLETLEE------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRD  148 (396)
T ss_dssp             CEECTT---SSEEEEEETTT--------EEEEEETTTCCE------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred             ceECCC---CCEEEEEEcCC--------cEEEEECCCCCc------EEEEecccccCCCCCEEEeccCCccccccccccc
Confidence            668775   45666666666        789999877653      2223323332222                   35


Q ss_pred             ECCCCCeEEEE-----ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccC------CeEEE
Q 024868           71 VNPSGDDFVCS-----TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD------GHLRI  138 (261)
Q Consensus        71 ~~~~~~~l~~~-----~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------~~i~~  138 (261)
                      |+|+++.++..     ..+..|++||+.+++... +       ..+...+..+.|+| +++.|+..+.+      ..|.+
T Consensus       149 ~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-~-------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (396)
T 3c5m_A          149 WQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV-I-------HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL  220 (396)
T ss_dssp             CCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE-E-------EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred             cCCCCcceeeeeeccCCCcceEEEEECCCCcEEe-e-------ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence            68888877654     345678899987765311 1       12345688999999 88877766533      46888


Q ss_pred             EEccCceEEeeccccC-C-ceeEEEEcCCCCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEec-CCC
Q 024868          139 MHWPSLRIILDEPKAH-K-SVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-DGT  210 (261)
Q Consensus       139 ~d~~~~~~~~~~~~~~-~-~v~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p-~~~  210 (261)
                      ||+..++.. .+..+. . .+..+.|+|||++|+..+.+     +.|++||+.+++...... ...  .. +.|+| ||+
T Consensus       221 ~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~--~~-~~~s~~dg~  295 (396)
T 3c5m_A          221 VNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP--CS-HLMSNFDGS  295 (396)
T ss_dssp             EETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS--EE-EEEECSSSS
T ss_pred             EECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC--CC-CCccCCCCc
Confidence            898765533 233332 2 57889999999988776543     349999999887654332 112  33 88999 999


Q ss_pred             cceEEEEEee---------------CCCcEEEEEECCCCeEEeeeeccCc-----------CeeEEEEeeCCCEEeC
Q 024868          211 KPFLFCTVQR---------------GDKALLAVYDISTWNKIGHKRLLRK-----------PASVLSISLDGKYLAM  261 (261)
Q Consensus       211 ~~~~~~~~~~---------------~~d~~i~~~d~~~~~~~~~~~~~~~-----------~v~~~~~s~dg~~la~  261 (261)
                      .+ +   ..+               ..+..|++||+.+++.. .+..+..           .+..++|+|||++|++
T Consensus       296 ~l-~---~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  367 (396)
T 3c5m_A          296 LM-V---GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF  367 (396)
T ss_dssp             EE-E---EEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             eE-E---EecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence            62 1   111               14578999999887653 3333333           2567899999998863

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=6.6e-16  Score=116.21  Aligned_cols=224  Identities=9%  Similarity=0.005  Sum_probs=147.5

Q ss_pred             eeeEEEEEeeCCcceEEE-EecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            6 TVTCGSWIKRPENVNLVV-LGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ...++++.++   .++.+ +...++        .|+.|+..+...      ......+...+.+++++++|+.+++.. +
T Consensus        25 ~p~~i~~~~~---g~l~v~~~~~~~--------~i~~~~~~~~~~------~~~~~~~~~~p~~i~~~~~g~l~v~~~-~   86 (270)
T 1rwi_B           25 SPSGVAVDSA---GNVYVTSEGMYG--------RVVKLATGSTGT------TVLPFNGLYQPQGLAVDGAGTVYVTDF-N   86 (270)
T ss_dssp             CEEEEEECTT---CCEEEEECSSSC--------EEEEECC-----------EECCCCSCCSCCCEEECTTCCEEEEET-T
T ss_pred             CccceEECCC---CCEEEEccCCCC--------cEEEecCCCccc------ceEeeCCcCCcceeEECCCCCEEEEcC-C
Confidence            4567777764   34555 445566        788898765442      111122335688999999998665554 8


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  164 (261)
                      +.|.+||..+.....      . .......+..++++|+|+++++...++.|.+|+..+.............+.+++++|
T Consensus        87 ~~i~~~d~~~~~~~~------~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~  159 (270)
T 1rwi_B           87 NRVVTLAAGSNNQTV------L-PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN  159 (270)
T ss_dssp             TEEEEECTTCSCCEE------C-CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT
T ss_pred             CEEEEEeCCCceEee------e-ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC
Confidence            889999876543210      1 112235688999999999777777788999998655443322222334678899999


Q ss_pred             CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC
Q 024868          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (261)
Q Consensus       165 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  244 (261)
                      +|+++++...++.|.+||.............. ..+.+++++++|..     .++...++.|.+||..............
T Consensus       160 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l-----~v~~~~~~~v~~~~~~~~~~~~~~~~~~  233 (270)
T 1rwi_B          160 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTV-----YVTEHNTNQVVKLLAGSTTSTVLPFTGL  233 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCE-----EEEETTTSCEEEECTTCSCCEECCCCSC
T ss_pred             CCCEEEEECCCCEEEEEecCCCceEeecccCC-CCceEEEECCCCCE-----EEEECCCCcEEEEcCCCCcceeeccCCC
Confidence            99977777778899999988766543322222 35889999999964     3556667889999987654332211222


Q ss_pred             cCeeEEEEeeCCCEEe
Q 024868          245 KPASVLSISLDGKYLA  260 (261)
Q Consensus       245 ~~v~~~~~s~dg~~la  260 (261)
                      ..+.+++++++|+.++
T Consensus       234 ~~p~~i~~~~~g~l~v  249 (270)
T 1rwi_B          234 NTPLAVAVDSDRTVYV  249 (270)
T ss_dssp             SCEEEEEECTTCCEEE
T ss_pred             CCceeEEECCCCCEEE
Confidence            5678999999998654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.73  E-value=5.4e-15  Score=112.95  Aligned_cols=224  Identities=11%  Similarity=0.054  Sum_probs=145.8

Q ss_pred             EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEE
Q 024868            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCK   88 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   88 (261)
                      +..|+++  ...++++....+        .|+.||+.+...      . .+ .....+.+++++++|+++++ . ++.|.
T Consensus        17 gp~w~~~--~~~l~~~d~~~~--------~i~~~d~~~~~~------~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~   76 (297)
T 3g4e_A           17 SPVWEEV--SNSLLFVDIPAK--------KVCRWDSFTKQV------Q-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFC   76 (297)
T ss_dssp             EEEEETT--TTEEEEEETTTT--------EEEEEETTTCCE------E-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEE
T ss_pred             CCeEECC--CCEEEEEECCCC--------EEEEEECCCCcE------E-EE-eCCCceEEEEECCCCCEEEE-E-CCeEE
Confidence            5667764  366777777777        899999987653      1 12 23467899999999995554 4 45699


Q ss_pred             EEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC---------CeEEEEEccCceEEeeccccCCceeE
Q 024868           89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAHKSVLD  159 (261)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~v~~  159 (261)
                      +||..++.... +. . .........+.+++++|+|+++++....         ..-.+|.+..................
T Consensus        77 ~~d~~~g~~~~-~~-~-~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~png  153 (297)
T 3g4e_A           77 ALNWKEQSAVV-LA-T-VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNG  153 (297)
T ss_dssp             EEETTTTEEEE-EE-E-CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEE
T ss_pred             EEECCCCcEEE-EE-e-cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccc
Confidence            99987665311 11 1 1111113457899999999976654221         22344444322222223333345688


Q ss_pred             EEEcCCCCEEE-EecCCCcEEEEEc--cCCcEE--EEEee--cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          160 MDFSLDSEFLA-TTSTDGSARIWKT--EDGVAW--TFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       160 ~~~s~~~~~l~-~~~~d~~i~iwd~--~~~~~~--~~~~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      ++|+||++.++ +.+.++.|.+||+  .++...  +.+..  .....+..++++++|+.     .++....+.|..||..
T Consensus       154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-----wva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-----WVACYNGGRVIRLDPV  228 (297)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-----EEEEETTTEEEEECTT
T ss_pred             eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-----EEEEcCCCEEEEEcCC
Confidence            99999998665 4556789999997  455432  12211  11234788999999975     3444456789999999


Q ss_pred             CCeEEeeeeccCcCeeEEEEe-eCCCEEe
Q 024868          233 TWNKIGHKRLLRKPASVLSIS-LDGKYLA  260 (261)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~s-~dg~~la  260 (261)
                      +++.+..+..+...+++++|. ||++.|.
T Consensus       229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~  257 (297)
T 3g4e_A          229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMY  257 (297)
T ss_dssp             TCCEEEEEECSSSBEEEEEEESGGGCEEE
T ss_pred             CceEEEEEECCCCCceEEEEeCCCCCEEE
Confidence            899887777766788999999 8988764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=8.2e-16  Score=119.90  Aligned_cols=187  Identities=13%  Similarity=0.105  Sum_probs=121.1

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC---Cc--EEEEEEeCCccccceeeeeCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GG--CKLFEVYGGATDINLLAKKMPPLQDA  112 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~--i~i~~~~~~~~~~~~~~~~~~~~~~~  112 (261)
                      .||.+|..++..       ..+    ..+..++|+|||++|+..+.+   +.  |++|++.+++. ..+       ....
T Consensus        44 ~l~~~d~~~~~~-------~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~-~~l-------~~~~  104 (347)
T 2gop_A           44 TIVIENLKNNAR-------RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS-KKI-------LEAK  104 (347)
T ss_dssp             EEEEEETTTCCE-------EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-EEE-------EEES
T ss_pred             eEEEEeCCCCce-------EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-EEE-------EcCC
Confidence            788999877653       122    468899999999999887654   33  66667666542 111       1112


Q ss_pred             CCeEEEEEeeCCcEEEEeccC---------------------------CeEEEEEccCceEEeeccccCCceeEEEEcCC
Q 024868          113 GPQKCLSFSVDGSRFAAGGVD---------------------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD  165 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d---------------------------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~  165 (261)
                      . +..++|+|||+.|++++.+                           ..|++||+.+++.+..+.. . .+..+.|+||
T Consensus       105 ~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spd  181 (347)
T 2gop_A          105 N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRD  181 (347)
T ss_dssp             E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETT
T ss_pred             C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCC
Confidence            3 8899999999998887632                           5699999988776233333 3 7889999999


Q ss_pred             CCEEEEecCCC-------cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-------CcEEEEEEC
Q 024868          166 SEFLATTSTDG-------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-------KALLAVYDI  231 (261)
Q Consensus       166 ~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-------d~~i~~~d~  231 (261)
                      | +++++..+.       ...||.+.+++. ..+..+ . .+..+  +|||++++    +.+..       ...|++|| 
T Consensus       182 g-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~-~~~~~--spdg~~l~----~~~~~~~~~~~~~~~l~~~d-  250 (347)
T 2gop_A          182 K-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-V-SFYAV--DSDGERIL----LYGKPEKKYMSEHNKLYIYD-  250 (347)
T ss_dssp             E-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-E-SEEEE--EECSSCEE----EEECCSSSCCCSSCEEEEEC-
T ss_pred             e-EEEEEecccccccccccccEEEeCCCce-EEeccC-c-ceeeE--CCCCCEEE----EEEccccCCccccceEEEEC-
Confidence            9 777765542       345555545554 344433 2 35544  99999832    22221       35789998 


Q ss_pred             CCCeEEeeeeccCcCeeE-EEEeeCCCEEe
Q 024868          232 STWNKIGHKRLLRKPASV-LSISLDGKYLA  260 (261)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~-~~~s~dg~~la  260 (261)
                       +++.......+...+.. +.|+ || +++
T Consensus       251 -~~~~~~l~~~~~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          251 -GKEVMGILDEVDRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             -SSCEEESSTTCCSEEEEEEEET-TE-EEE
T ss_pred             -CCceEeccccCCcccCCccEEc-Cc-EEE
Confidence             55544333444567776 8999 88 544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=7.5e-15  Score=111.43  Aligned_cols=199  Identities=11%  Similarity=0.112  Sum_probs=135.0

Q ss_pred             eeeEEEEEeeCCcceEEEEecC-CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .+.++++.+.  ...++++... ++        .|..||.....+      ......+...+.+++++|+|+.+++...+
T Consensus        78 ~p~~i~~~~~--~g~l~v~~~~~~~--------~i~~~d~~g~~~------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  141 (286)
T 1q7f_A           78 YPNRVAVVRN--SGDIIVTERSPTH--------QIQIYNQYGQFV------RKFGATILQHPRGVTVDNKGRIIVVECKV  141 (286)
T ss_dssp             SEEEEEEETT--TTEEEEEECGGGC--------EEEEECTTSCEE------EEECTTTCSCEEEEEECTTSCEEEEETTT
T ss_pred             CceEEEEEcC--CCeEEEEcCCCCC--------EEEEECCCCcEE------EEecCccCCCceEEEEeCCCCEEEEECCC
Confidence            4566777422  2455555532 55        788898554332      11112344578999999999877776678


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc--CCceeEEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDMDF  162 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~  162 (261)
                      +.|++|+...... . .    .....+...+..++++|+|+++++...++.|++||.. ++.+..+...  ...+..+++
T Consensus       142 ~~i~~~~~~g~~~-~-~----~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~  214 (286)
T 1q7f_A          142 MRVIIFDQNGNVL-H-K----FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGI  214 (286)
T ss_dssp             TEEEEECTTSCEE-E-E----EECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEE
T ss_pred             CEEEEEcCCCCEE-E-E----eCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEE
Confidence            8899998643221 1 1    1111223468999999999988877788999999974 4444444322  246889999


Q ss_pred             cCCCCEEEEecCCC-cEEEEEccCCcEEEEEeecCC-CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          163 SLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       163 s~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      +|+|+++++...++ .|.+||. +++.+..+..+.. ..+.+++++|+|+.     +++ +.++.|++|++...
T Consensus       215 d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l-----~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          215 NSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV-----VLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE-----EEE-ETTTEEEEEECSCC
T ss_pred             CCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE-----EEE-CCCCeEEEEEcccc
Confidence            99999888887776 9999995 5677777765432 23779999999975     344 35889999998654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=4.2e-16  Score=132.53  Aligned_cols=233  Identities=10%  Similarity=-0.018  Sum_probs=143.6

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+..++|+|+   ..++|.+...+  |. ....|+.+|..+++....    ..+..  .....++|+|||+.|+.++.+
T Consensus       121 ~~~~~~~~SPD---G~~la~~~~~~--G~-~~~~i~v~dl~tg~~~~~----~~~~~--~~~~~~~wspDg~~l~~~~~d  188 (695)
T 2bkl_A          121 VSLGTWAVSWD---GKKVAFAQKPN--AA-DEAVLHVIDVDSGEWSKV----DVIEG--GKYATPKWTPDSKGFYYEWLP  188 (695)
T ss_dssp             EEEEEEEECTT---SSEEEEEEEET--TC-SCCEEEEEETTTCCBCSS----CCBSC--CTTCCCEECTTSSEEEEEECC
T ss_pred             EEEEEEEECCC---CCEEEEEECCC--CC-ceEEEEEEECCCCCCcCC----cccCc--ccccceEEecCCCEEEEEEec
Confidence            36888999986   34555332211  00 112899999988774100    01111  112689999999999998887


Q ss_pred             Cc-------------EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC----eEEEEEccCceEE
Q 024868           85 GG-------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLRII  147 (261)
Q Consensus        85 g~-------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~~~~  147 (261)
                      ..             |++|++.++.....++.   ....+...+..+.|||||++|++.+.++    .|++++..+++. 
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-  264 (695)
T 2bkl_A          189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-  264 (695)
T ss_dssp             CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-
T ss_pred             CCCCCccccCCCCCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-
Confidence            65             99999987653222211   1112235688999999999998877655    677777655543 


Q ss_pred             eeccccCCceeEEEEcCCCCEEEEec---CCCcEEEEEccCCcE--EEEEeecC-CCceEEEEEecCCCcceEEEEEeeC
Q 024868          148 LDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVA--WTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       148 ~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                      ..+..+...+....+ ++|.+++.+.   .++.|.+||+.+++.  ...+..+. ...+..++|+ ++..     +++..
T Consensus       265 ~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l-----v~~~~  337 (695)
T 2bkl_A          265 RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL-----SLEYL  337 (695)
T ss_dssp             EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE-----EEEEE
T ss_pred             EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE-----EEEEE
Confidence            333444445556666 5666444443   257899999987653  23333332 4457888888 4443     45666


Q ss_pred             CCcEEEEEECC-CCeEEeeeecc-CcCeeEEEEeeCCCEEe
Q 024868          222 DKALLAVYDIS-TWNKIGHKRLL-RKPASVLSISLDGKYLA  260 (261)
Q Consensus       222 ~d~~i~~~d~~-~~~~~~~~~~~-~~~v~~~~~s~dg~~la  260 (261)
                      .|+..++|.+. +++.+..+..+ ...+..++++||++.|+
T Consensus       338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  378 (695)
T 2bkl_A          338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY  378 (695)
T ss_dssp             ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred             ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence            67766666543 35544445444 45677888999988765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=3.8e-15  Score=115.40  Aligned_cols=213  Identities=6%  Similarity=-0.111  Sum_probs=141.4

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCcc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGAT   97 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~   97 (261)
                      ..+.++...++        .+..+|..+.+.      ...+. ....+..++++++++ +.++. .++.|.+||..+.+.
T Consensus        54 ~~lyv~~~~~~--------~v~viD~~t~~~------~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           54 GIGWIVVNNSH--------VIFAIDINTFKE------VGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEI  117 (328)
T ss_dssp             TEEEEEEGGGT--------EEEEEETTTCCE------EEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEE
T ss_pred             CEEEEEEcCCC--------EEEEEECcccEE------EEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeE
Confidence            44556665566        889999988764      22333 346788999999985 55444 789999999987764


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC-
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-  175 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-  175 (261)
                      .......  ...........+++ .+++.+++.. .++.|.++|..+++....+.. ......+.++|+|++++++..+ 
T Consensus       118 ~~~i~~g--~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~  193 (328)
T 3dsm_A          118 TGYIECP--DMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGY  193 (328)
T ss_dssp             EEEEECT--TCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBC
T ss_pred             EEEEEcC--CccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCc
Confidence            2221100  00000113455667 4454444443 488999999998887655443 2345788999999977776654 


Q ss_pred             ---------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee--eeccC
Q 024868          176 ---------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH--KRLLR  244 (261)
Q Consensus       176 ---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~--~~~~~  244 (261)
                               +.|.++|..+++....+.......+..++|+|+++.+|     .+..  .|.+||..+++....  .....
T Consensus       194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly-----v~~~--~v~~~d~~t~~~~~~~~~~~~~  266 (328)
T 3dsm_A          194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY-----WINN--DIWRMPVEADRVPVRPFLEFRD  266 (328)
T ss_dssp             TTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE-----EESS--SEEEEETTCSSCCSSCSBCCCS
T ss_pred             cCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE-----EEcc--EEEEEECCCCceeeeeeecCCC
Confidence                     78999999999888777643333589999999999843     2222  799999988775321  11113


Q ss_pred             cCeeEEEEeeCCCE
Q 024868          245 KPASVLSISLDGKY  258 (261)
Q Consensus       245 ~~v~~~~~s~dg~~  258 (261)
                      .....++++|++..
T Consensus       267 ~~p~gi~vdp~~g~  280 (328)
T 3dsm_A          267 TKYYGLTVNPNNGE  280 (328)
T ss_dssp             SCEEEEEECTTTCC
T ss_pred             CceEEEEEcCCCCe
Confidence            56788999995443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.71  E-value=5e-16  Score=121.51  Aligned_cols=177  Identities=10%  Similarity=0.017  Sum_probs=130.0

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc----eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN----LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d  140 (261)
                      .+..+++++...++++|+.++ +++|++........    .... ........ |+.++|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999999999998886 77899865431000    0000 01112234 999999  89999999 889999999


Q ss_pred             ccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEee
Q 024868          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                      +++.........+...+.++.+.+..  +++++.||.+.+||+++++... +   .. .|++++|||+| .      +.+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~---~~-~Vs~v~WSpkG-~------~vg  178 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L---AQ-NVTSFDVTNSQ-L------AVL  178 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E---EE-SEEEEEECSSE-E------EEE
T ss_pred             chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c---cC-CceEEEEcCCc-e------EEE
Confidence            98765444444555578887776542  8888899999999999887653 2   12 59999999999 3      456


Q ss_pred             CCCcEEEEEECCCCeE--Eeee------e---ccCcCeeEEEEeeCCCEEeC
Q 024868          221 GDKALLAVYDISTWNK--IGHK------R---LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~--~~~~------~---~~~~~v~~~~~s~dg~~la~  261 (261)
                      ..||++++|+...++.  ...+      .   .+...|.++.|.++++++++
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            6789999999887764  3334      1   25678999999999999874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=6.2e-16  Score=120.59  Aligned_cols=209  Identities=10%  Similarity=-0.019  Sum_probs=130.3

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-   84 (261)
                      .+..++|+|+   ...++....++   ......||.++..++..      ..... +.. +..++|+|||+.|+.++.+ 
T Consensus        60 ~~~~~~~SpD---g~~la~~~~~~---~~~~~~l~~~~~~~g~~------~~l~~-~~~-~~~~~wspdg~~l~~~~~~~  125 (347)
T 2gop_A           60 NATMPRISPD---GKKIAFMRANE---EKKVSEIWVADLETLSS------KKILE-AKN-IRSLEWNEDSRKLLIVGFKR  125 (347)
T ss_dssp             SCEEEEECTT---SSEEEEEEEET---TTTEEEEEEEETTTTEE------EEEEE-ESE-EEEEEECTTSSEEEEEEECC
T ss_pred             cCCCeEECCC---CCEEEEEEecc---CCCcceEEEEECCCCce------EEEEc-CCC-ccceeECCCCCEEEEEEccC
Confidence            3567889886   33455443221   01223799999877653      22222 223 8999999999999887642 


Q ss_pred             --------------------------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-----
Q 024868           85 --------------------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----  133 (261)
Q Consensus        85 --------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----  133 (261)
                                                ..|++||+.+++.... +.    .   . .+..+.|+||| +++++..+     
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~-l~----~---~-~~~~~~~spdg-~~~~~~~~~~~~~  195 (347)
T 2gop_A          126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE-FE----K---P-RFSSGIWHRDK-IVVNVPHREIIPQ  195 (347)
T ss_dssp             CC---------CCCC---------CEEEEEEEETTTTEEEEE-EE----E---E-TTCEEEEETTE-EEEEEECCCSSCC
T ss_pred             CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee-ec----C---C-CcccccCCCCe-EEEEEeccccccc
Confidence                                      4688888876653111 11    1   1 56789999999 77766543     


Q ss_pred             -C-eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC--------CcEEEEEccCCcEEEEEeecCCCceEE-
Q 024868          134 -G-HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIEL-  202 (261)
Q Consensus       134 -~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~-  202 (261)
                       . ...+|.+.+++. ..+..+ ..+..+  +|||++|+..+.+        ..|.+||  +++.. .+.......+.. 
T Consensus       196 ~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~~~~~~~~~  268 (347)
T 2gop_A          196 YFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILDEVDRGVGQA  268 (347)
T ss_dssp             SSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESSTTCCSEEEEE
T ss_pred             ccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccccCCcccCCc
Confidence             2 334444444443 333333 344444  9999988877644        3677777  55543 333333445776 


Q ss_pred             EEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       203 ~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      +.|+ ++ .     +++++.++.+++| +.+++.. .+..+...+.+++|+|
T Consensus       269 ~~~s-dg-~-----~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          269 KIKD-GK-V-----YFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEET-TE-E-----EEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS
T ss_pred             cEEc-Cc-E-----EEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC
Confidence            8999 87 4     4667778889999 8766554 3344467788999998

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=1.8e-15  Score=129.00  Aligned_cols=186  Identities=12%  Similarity=0.079  Sum_probs=125.1

Q ss_pred             CCCCceEEEECCCCCeEEEEecCC-----cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe-
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH-  135 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-  135 (261)
                      |...+..++|||||++|+.+..++     .|++||+.+++.......        ...+..++|+|||+.|+.++.++. 
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--------~~~~~~~~wspDg~~l~~~~~~~~~  194 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--------RVKFSCMAWTHDGKGMFYNAYPQQD  194 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--------EECSCCEEECTTSSEEEEEECCCCS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--------CcccceEEEEeCCCEEEEEEECCcc
Confidence            444688999999999998776543     899999988764221111        112567999999999998877655 


Q ss_pred             ---------------EEEEEccCceE----EeeccccCCceeEEEEcCCCCEEEEecC-----CCcEEEEEccC------
Q 024868          136 ---------------LRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTED------  185 (261)
Q Consensus       136 ---------------i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~iwd~~~------  185 (261)
                                     |++|++.+++.    +.....+...+..+.|+|||++|+..+.     +..|++||+.+      
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  274 (710)
T 2xdw_A          195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (710)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence                           99999987652    2122223345789999999999887654     56899999986      


Q ss_pred             Cc-EEEEEeecCCCceEEEEEecCCCcceEEEEEee--CCCcEEEEEECCCCeE--EeeeeccCc--CeeEEEEeeCCCE
Q 024868          186 GV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLLRK--PASVLSISLDGKY  258 (261)
Q Consensus       186 ~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~--~~d~~i~~~d~~~~~~--~~~~~~~~~--~v~~~~~s~dg~~  258 (261)
                      ++ ....+..+... +.. .|+|+|+.+++   .+.  ...+.|.+||+.+++.  ...+..+..  .+..++|++++.+
T Consensus       275 ~~~~~~~l~~~~~~-~~~-~~s~dg~~l~~---~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  349 (710)
T 2xdw_A          275 GILKWVKLIDNFEG-EYD-YVTNEGTVFTF---KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (710)
T ss_dssp             SSCCCEEEECSSSS-CEE-EEEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             CccceEEeeCCCCc-EEE-EEeccCCEEEE---EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence            53 34555555443 444 58999998432   221  2245899999987641  223333332  5778899866655


Q ss_pred             Ee
Q 024868          259 LA  260 (261)
Q Consensus       259 la  260 (261)
                      ++
T Consensus       350 v~  351 (710)
T 2xdw_A          350 VL  351 (710)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=2.1e-13  Score=103.87  Aligned_cols=224  Identities=6%  Similarity=-0.048  Sum_probs=151.9

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+.++++.++   .++.++...++        .+..||+. ..+     .......+...+.++++.++|+.+++...+
T Consensus        15 ~~~~~i~~d~~---g~l~v~~~~~~--------~v~~~d~~-~~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~   77 (299)
T 2z2n_A           15 TGPYGITVSDK---GKVWITQHKAN--------MISCINLD-GKI-----TEYPLPTPDAKVMCLTISSDGEVWFTENAA   77 (299)
T ss_dssp             CCEEEEEECTT---SCEEEEETTTT--------EEEEECTT-CCE-----EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCccceEECCC---CCEEEEecCCC--------cEEEEcCC-CCe-----EEecCCcccCceeeEEECCCCCEEEeCCCC
Confidence            45778888764   45555555556        78899987 443     122233345678999999999877776667


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s  163 (261)
                      +.|..|+... ..  ...    ........+..++++|+++++++...++.|..||. +++.... .......+..++++
T Consensus        78 ~~i~~~~~~g-~~--~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           78 NKIGRITKKG-II--KEY----TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG  149 (299)
T ss_dssp             TEEEEECTTS-CE--EEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             CeEEEECCCC-cE--EEE----eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc
Confidence            8899998652 21  111    11112456889999999988887777889999998 5544322 22233468999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eec
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL  242 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~  242 (261)
                      ++|+++++...++.|..||. +++............+.+++++++|+.     .++...++.|.+||. +++.... ...
T Consensus       150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~  222 (299)
T 2z2n_A          150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL-----WFVEIIGNKIGRITT-SGEITEFKIPT  222 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-----EEEccCCceEEEECC-CCcEEEEECCC
Confidence            99988887777889999998 666544312222335889999999885     355556778999999 6664321 122


Q ss_pred             cCcCeeEEEEeeCCCEEe
Q 024868          243 LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la  260 (261)
                      ....+.+++++++|+..+
T Consensus       223 ~~~~~~~i~~~~~g~l~v  240 (299)
T 2z2n_A          223 PNARPHAITAGAGIDLWF  240 (299)
T ss_dssp             TTCCEEEEEECSTTCEEE
T ss_pred             CCCCceeEEECCCCCEEE
Confidence            335788999999998654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.69  E-value=8.1e-14  Score=115.02  Aligned_cols=203  Identities=11%  Similarity=0.019  Sum_probs=143.0

Q ss_pred             EEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEE
Q 024868           12 WIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE   91 (261)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~   91 (261)
                      |..++ ...++++...++        .+..+|..+.++      ...+. ....+..+.|+|||+++++++.++.|.+||
T Consensus       161 ~~~d~-~~~~~V~~~~~~--------~V~viD~~t~~v------~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD  224 (567)
T 1qks_A          161 NDWDL-ENLFSVTLRDAG--------QIALIDGSTYEI------KTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMID  224 (567)
T ss_dssp             SCCCG-GGEEEEEETTTT--------EEEEEETTTCCE------EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             cccCC-CceEEEEeCCCC--------eEEEEECCCCeE------EEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEE
Confidence            33443 245666777777        999999988765      22333 223567999999999999999999999999


Q ss_pred             Ee--CCccccceeeeeCCCCCCCCCeEEEEEe----eCCcEEEEec-cCCeEEEEEccCceEEeecccc----------C
Q 024868           92 VY--GGATDINLLAKKMPPLQDAGPQKCLSFS----VDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKA----------H  154 (261)
Q Consensus        92 ~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~----------~  154 (261)
                      +.  +.+...        .+........++|+    |||+++++++ .++++.++|..+.+.+..+...          .
T Consensus       225 ~~~~t~~~v~--------~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p  296 (567)
T 1qks_A          225 LWMKEPTTVA--------EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP  296 (567)
T ss_dssp             TTSSSCCEEE--------EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred             CCCCCCcEeE--------EEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccC
Confidence            95  443211        11112345789999    6999988876 5689999999888876544321          1


Q ss_pred             C-ceeEEEEcCCCCE-EEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          155 K-SVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       155 ~-~v~~~~~s~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      . .+..+..++++.. ++....+|.|.++|..+.+...............+.|+|+|+++    +++...++.|.++|+.
T Consensus       297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~----~va~~~sn~V~ViD~~  372 (567)
T 1qks_A          297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF----ITAANARNKLVVIDTK  372 (567)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE----EEEEGGGTEEEEEETT
T ss_pred             CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE----EEEeCCCCeEEEEECC
Confidence            2 5778888887654 45556679999999987654433332333357889999999984    3455567889999999


Q ss_pred             CCeEEeeeec
Q 024868          233 TWNKIGHKRL  242 (261)
Q Consensus       233 ~~~~~~~~~~  242 (261)
                      +++.+.....
T Consensus       373 t~kl~~~i~v  382 (567)
T 1qks_A          373 EGKLVAIEDT  382 (567)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCcEEEEEec
Confidence            9987765544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.68  E-value=7.8e-15  Score=124.77  Aligned_cols=201  Identities=11%  Similarity=0.059  Sum_probs=128.9

Q ss_pred             EEEEEcCCCCceecCCeEEeee------cCCCCCceEEEECCCCCeEEEE-----ecCCcEEEEEEeCCccccceeeeeC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVF------DESEGDPMTIAVNPSGDDFVCS-----TTNGGCKLFEVYGGATDINLLAKKM  106 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~i~~~~~~~~~~~~~~~~~  106 (261)
                      .+|..+..++..      ...+      .+|...+..++|||||++|+.+     +.+.+|++||+.+++...      .
T Consensus        95 ~l~~~~~~~~~~------~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------~  162 (695)
T 2bkl_A           95 ILYWRQGESGQE------KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------V  162 (695)
T ss_dssp             EEEEEESTTSCC------EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------S
T ss_pred             EEEEEcCCCCCc------EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------C
Confidence            678777654432      2122      2455578899999999999844     334689999999876420      0


Q ss_pred             CCCCCCCCeEEEEEeeCCcEEEEeccCCe-------------EEEEEccCce----EEeeccccCCceeEEEEcCCCCEE
Q 024868          107 PPLQDAGPQKCLSFSVDGSRFAAGGVDGH-------------LRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFL  169 (261)
Q Consensus       107 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l  169 (261)
                      ..+.. .....++|+|||+.|+.++.+..             |++|++.++.    .+.....+...+..+.|||||++|
T Consensus       163 ~~~~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l  241 (695)
T 2bkl_A          163 DVIEG-GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYL  241 (695)
T ss_dssp             CCBSC-CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCE
T ss_pred             cccCc-ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEE
Confidence            01111 11267899999999999887665             9999998765    222222333468899999999999


Q ss_pred             EEecCCC----cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC---CCcEEEEEECCCCeE---Eee
Q 024868          170 ATTSTDG----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNK---IGH  239 (261)
Q Consensus       170 ~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~---~d~~i~~~d~~~~~~---~~~  239 (261)
                      +..+.++    .|++||..+++. ..+..+.. .+....| ++|+ ++    +...   .++.|.+||+.+++.   ...
T Consensus       242 ~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~-~~~~~~~-~~g~-l~----~~s~~~~~~~~l~~~d~~~~~~~~~~~l  313 (695)
T 2bkl_A          242 FVYILRGWSENDVYWKRPGEKDF-RLLVKGVG-AKYEVHA-WKDR-FY----VLTDEGAPRQRVFEVDPAKPARASWKEI  313 (695)
T ss_dssp             EEEEEETTTEEEEEEECTTCSSC-EEEEECSS-CCEEEEE-ETTE-EE----EEECTTCTTCEEEEEBTTBCSGGGCEEE
T ss_pred             EEEEeCCCCceEEEEEcCCCCce-EEeecCCC-ceEEEEe-cCCc-EE----EEECCCCCCCEEEEEeCCCCCccCCeEE
Confidence            8877655    677777655554 34444444 3556656 6777 43    2232   468999999987652   222


Q ss_pred             eecc-CcCeeEEEEeeCCCEEe
Q 024868          240 KRLL-RKPASVLSISLDGKYLA  260 (261)
Q Consensus       240 ~~~~-~~~v~~~~~s~dg~~la  260 (261)
                      +..+ ...+..++|+ ++.+++
T Consensus       314 ~~~~~~~~l~~~~~~-~~~lv~  334 (695)
T 2bkl_A          314 VPEDSSASLLSVSIV-GGHLSL  334 (695)
T ss_dssp             ECCCSSCEEEEEEEE-TTEEEE
T ss_pred             ecCCCCCeEEEEEEE-CCEEEE
Confidence            2222 3457778887 554443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.68  E-value=3.9e-14  Score=108.79  Aligned_cols=230  Identities=13%  Similarity=0.101  Sum_probs=144.3

Q ss_pred             eeEEEEEeeCCcceEEEE-------ecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeE
Q 024868            7 VTCGSWIKRPENVNLVVL-------GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDF   78 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l   78 (261)
                      ..+++|.++   ..+.++       +..++        .|+.||+.++.+..  .......++...+.+++++++ ++.+
T Consensus        20 ~~~~~~~~~---g~l~~~~~~~~~~~~~~~--------~i~~~d~~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~g~l~   86 (314)
T 1pjx_A           20 AEGPVFDKN---GDFYIVAPEVEVNGKPAG--------EILRIDLKTGKKTV--ICKPEVNGYGGIPAGCQCDRDANQLF   86 (314)
T ss_dssp             CEEEEECTT---SCEEEEETTCEETTEECC--------EEEEECTTTCCEEE--EECCEETTEECCEEEEEECSSSSEEE
T ss_pred             ccCceECCC---CCEEEEEeccccCCCCCC--------EEEEEeCCCCcEEE--EEecccCCCCCCCceEEEecCCCcEE
Confidence            467888753   456655       44556        79999977665411  000001124467899999999 7655


Q ss_pred             EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC---------------CeEEEEEccC
Q 024868           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------------GHLRIMHWPS  143 (261)
Q Consensus        79 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------~~i~~~d~~~  143 (261)
                      ++ +..+.|.+||.. ++. ...... .........+.+++++++|+++++...+               +.|..++.. 
T Consensus        87 v~-~~~~~l~~~d~~-g~~-~~~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (314)
T 1pjx_A           87 VA-DMRLGLLVVQTD-GTF-EEIAKK-DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-  161 (314)
T ss_dssp             EE-ETTTEEEEEETT-SCE-EECCSB-CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred             EE-ECCCCEEEEeCC-CCE-EEEEec-cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence            54 444468889877 432 111000 0000112457899999999887776554               567777755 


Q ss_pred             ceEEeeccccCCceeEEEEc----CCCCEEEE-ecCCCcEEEEEcc-CCcE-----EEEEeecCCCceEEEEEecCCCcc
Q 024868          144 LRIILDEPKAHKSVLDMDFS----LDSEFLAT-TSTDGSARIWKTE-DGVA-----WTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       144 ~~~~~~~~~~~~~v~~~~~s----~~~~~l~~-~~~d~~i~iwd~~-~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      ++.. ...........++|+    |+++.++. ...++.|.+||.. +++.     ...+..+....+..++++++|+. 
T Consensus       162 g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-  239 (314)
T 1pjx_A          162 GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL-  239 (314)
T ss_dssp             SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE-
T ss_pred             CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE-
Confidence            4432 222333456889999    99976554 4567899999987 4542     12222121034788999999985 


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                          .++...++.|.+||.++++.+..+..+...+.+++|+|||+.|.
T Consensus       240 ----~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          240 ----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             ----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred             ----EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence                34444567899999987776655655557889999999998553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=3.9e-15  Score=115.45  Aligned_cols=190  Identities=12%  Similarity=0.024  Sum_probs=128.2

Q ss_pred             eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC----
Q 024868           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----  133 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  133 (261)
                      .+..+...+.+++|+|+|+.++++..++.|++||..++..... .      ......+.+++++|+|+++++...+    
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~-~------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~  111 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-F------VSHKANPAAIKIHKDGRLFVCYLGDFKST  111 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-E------ECSSSSEEEEEECTTSCEEEEECTTSSSC
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-e------eCCCCCcceEEECCCCcEEEEeCCCCCCC
Confidence            4555666789999999999777777888999999877653111 0      0124578999999999988777655    


Q ss_pred             CeEEEEEccCceEEeecc--ccCCceeEEEEcCCCCEEEEecC------CCcEEEEEccCCcEEEEEeecCCCceEEEEE
Q 024868          134 GHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  205 (261)
                      +.|.+||..++.......  .....+..+.++|+|+++++...      .+.|..+|..+++...... ... .+..++|
T Consensus       112 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~i~~  189 (333)
T 2dg1_A          112 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NIS-VANGIAL  189 (333)
T ss_dssp             CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EES-SEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCC-cccceEE
Confidence            689999987765432221  22346899999999988877654      2456666665555443322 222 4789999


Q ss_pred             ecCCCcceEEEEEeeCCCcEEEEEECCC-CeEEee-----e-ecc-CcCeeEEEEeeCCCEEe
Q 024868          206 SKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGH-----K-RLL-RKPASVLSISLDGKYLA  260 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~-----~-~~~-~~~v~~~~~s~dg~~la  260 (261)
                      +|+|+.++    ++...++.|++||+.+ ++.+..     . ... ...+..++++++|++.+
T Consensus       190 ~~dg~~l~----v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v  248 (333)
T 2dg1_A          190 STDEKVLW----VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV  248 (333)
T ss_dssp             CTTSSEEE----EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE
T ss_pred             CCCCCEEE----EEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEE
Confidence            99998632    4445578999999963 332211     1 111 13567899999998654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=7.9e-15  Score=111.91  Aligned_cols=186  Identities=11%  Similarity=-0.032  Sum_probs=127.9

Q ss_pred             eecCCCCCceEEEECCCCC-eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeE
Q 024868           58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  136 (261)
                      .+..+.....+++|+|+++ .++++..++.|+.|+..++ . .. .      ..+...+.+++++|+|+++++...++.|
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~-~------~~~~~~~~~l~~~~dg~l~v~~~~~~~i   92 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP-E------MHPSHHQNGHCLNKQGHLIACSHGLRRL   92 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE-E------ESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE-E------ECCCCCcceeeECCCCcEEEEecCCCeE
Confidence            3444556788999999998 6777778899999998775 2 11 1      1134568999999999988877777899


Q ss_pred             EEEEccCceEEeecccc----CCceeEEEEcCCCCEEEE----ec-------------CCCcEEEEEccCCcEEEEEeec
Q 024868          137 RIMHWPSLRIILDEPKA----HKSVLDMDFSLDSEFLAT----TS-------------TDGSARIWKTEDGVAWTFLTRN  195 (261)
Q Consensus       137 ~~~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~----~~-------------~d~~i~iwd~~~~~~~~~~~~~  195 (261)
                      .+||..+++........    ...+..++++|+|+++++    ++             ..+.|..++.. ++. ..+..+
T Consensus        93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~  170 (296)
T 3e5z_A           93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD  170 (296)
T ss_dssp             EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC
T ss_pred             EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC
Confidence            99998777653322211    124678999999998887    33             12345555544 443 334333


Q ss_pred             CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC-CCeE---EeeeeccCcCeeEEEEeeCCCEEe
Q 024868          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNK---IGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       196 ~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~---~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .. .+..++|+|+|+.     +++...++.|++||+. +++.   ...+......+..++++++|++.+
T Consensus       171 ~~-~~~gi~~s~dg~~-----lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v  233 (296)
T 3e5z_A          171 RV-KPNGLAFLPSGNL-----LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA  233 (296)
T ss_dssp             CS-SEEEEEECTTSCE-----EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE
T ss_pred             CC-CCccEEECCCCCE-----EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE
Confidence            33 4789999999997     4666778899999997 4544   222222345567899999998654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=9.6e-13  Score=100.13  Aligned_cols=223  Identities=9%  Similarity=0.017  Sum_probs=148.3

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+.++++.++   ..+.++...++        .++.|++.. ..     ....+......+..+++.++++.+++...+
T Consensus        57 ~~~~~i~~~~~---g~l~v~~~~~~--------~i~~~~~~g-~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  119 (299)
T 2z2n_A           57 AKVMCLTISSD---GEVWFTENAAN--------KIGRITKKG-II-----KEYTLPNPDSAPYGITEGPNGDIWFTEMNG  119 (299)
T ss_dssp             CCEEEEEECTT---SCEEEEETTTT--------EEEEECTTS-CE-----EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CceeeEEECCC---CCEEEeCCCCC--------eEEEECCCC-cE-----EEEeCCCcCCCceeeEECCCCCEEEEecCC
Confidence            34666777653   44555555556        788898763 22     122233345678999999999877776667


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s  163 (261)
                      +.|..||. ++... .     .........+..++++++|+.+++...++.|..||. +++.... .......+..++++
T Consensus       120 ~~i~~~d~-~g~~~-~-----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~  191 (299)
T 2z2n_A          120 NRIGRITD-DGKIR-E-----YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG  191 (299)
T ss_dssp             TEEEEECT-TCCEE-E-----EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             ceEEEECC-CCCEE-E-----ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC
Confidence            88999987 43321 1     011112356889999999988877767789999998 6654332 22233468899999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eec
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL  242 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~  242 (261)
                      ++|+++++...++.|.+||. +++............+.+++++++|+.     .++...++.|..||. +++.... ...
T Consensus       192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~d~-~g~~~~~~~~~  264 (299)
T 2z2n_A          192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDL-----WFTEWGANKIGRLTS-NNIIEEYPIQI  264 (299)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCE-----EEEETTTTEEEEEET-TTEEEEEECSS
T ss_pred             CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCE-----EEeccCCceEEEECC-CCceEEEeCCC
Confidence            99997777777889999998 666443212212235889999999985     355556788999998 4543321 123


Q ss_pred             cCcCeeEEEEeeCCCEEe
Q 024868          243 LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la  260 (261)
                      ....+.++++ ++|++.+
T Consensus       265 ~~~~~~~i~~-~~g~l~v  281 (299)
T 2z2n_A          265 KSAEPHGICF-DGETIWF  281 (299)
T ss_dssp             SSCCEEEEEE-CSSCEEE
T ss_pred             CCCccceEEe-cCCCEEE
Confidence            3457888999 8888654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=2e-14  Score=111.44  Aligned_cols=207  Identities=14%  Similarity=0.121  Sum_probs=138.0

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee-------cCCCCCceEEEECC-CCCe
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-------DESEGDPMTIAVNP-SGDD   77 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~-~~~~   77 (261)
                      ....+++.|+   .+++++...++        .|+.|++++...   .......       ..+-..+..++++| +++.
T Consensus        92 ~p~gia~d~~---g~l~v~d~~~~--------~v~~~~~~g~~~---~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~l  157 (329)
T 3fvz_A           92 LPHGLSIDTD---GNYWVTDVALH--------QVFKLDPHSKEG---PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAV  157 (329)
T ss_dssp             SEEEEEECTT---SCEEEEETTTT--------EEEEECTTCSSC---CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCE
T ss_pred             CceEEEECCC---CCEEEEECCCC--------EEEEEeCCCCeE---EEEEecccCCCCCCccccCCCcEEEEeCCCCeE
Confidence            4567777764   45777777777        899999876521   0111100       23445789999999 7877


Q ss_pred             EEEEe-cCCcEEEEEEeCCccccceeeeeCC---CCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCceEEeecc-
Q 024868           78 FVCST-TNGGCKLFEVYGGATDINLLAKKMP---PLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP-  151 (261)
Q Consensus        78 l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~-  151 (261)
                      +++.+ .++.|++|+.. +............   ..........++++|+ ++++++...++.|++|+..+++.+..+. 
T Consensus       158 yv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~  236 (329)
T 3fvz_A          158 FVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH  236 (329)
T ss_dssp             EEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             EEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence            77765 58899999943 3321111100000   0011234789999998 7777777788999999998787765553 


Q ss_pred             -ccCCceeEEEEcC------CCCEEEEecCCCcEEEEEccCCcEEEEEe---ecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868          152 -KAHKSVLDMDFSL------DSEFLATTSTDGSARIWKTEDGVAWTFLT---RNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       152 -~~~~~v~~~~~s~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                       .....+..++++|      +|+..++...+..|++||..+++.+..+.   .+.. .+..++++|+|..     .++..
T Consensus       237 ~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~l-----yvad~  310 (329)
T 3fvz_A          237 ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTV-----YIGDA  310 (329)
T ss_dssp             TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEE-----EEEES
T ss_pred             cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCE-----EEEEC
Confidence             2334688999999      33333333345689999999999988874   2333 4889999999954     46777


Q ss_pred             CCcEEEEEECCC
Q 024868          222 DKALLAVYDIST  233 (261)
Q Consensus       222 ~d~~i~~~d~~~  233 (261)
                      .++.|++|++..
T Consensus       311 ~~~~I~~~~~~~  322 (329)
T 3fvz_A          311 HTNTVWKFTLTE  322 (329)
T ss_dssp             SSCCEEEEEEEE
T ss_pred             CCCEEEEEeCCc
Confidence            888999999753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.67  E-value=1.4e-14  Score=124.01  Aligned_cols=231  Identities=11%  Similarity=-0.056  Sum_probs=141.4

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      .+..++|+|+   ...++.+..++  | .....|+.+|..+++...     ...  +...+..++|+|| +.|+.+..++
T Consensus       164 ~~~~~~~SPD---G~~la~~~~~~--G-~e~~~i~v~dl~tg~~~~-----~~~--~~~~~~~~~wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          164 ALDAWAASDD---GRLLAYSVQDG--G-SDWRTVKFVGVADGKPLA-----DEL--KWVKFSGLAWLGN-DALLYSRFAE  229 (741)
T ss_dssp             EEEEEEECTT---SSEEEEEEEET--T-CSEEEEEEEETTTCCEEE-----EEE--EEEESCCCEESTT-SEEEEEECCC
T ss_pred             EEEeEEECCC---CCEEEEEEcCC--C-CceEEEEEEECCCCCCCC-----ccC--CCceeccEEEECC-CEEEEEEecC
Confidence            6778899986   44566554332  1 112379999998877411     111  1122457899999 9998887665


Q ss_pred             c--------------EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccCc--
Q 024868           86 G--------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSL--  144 (261)
Q Consensus        86 ~--------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~--  144 (261)
                      .              |++|++.+......++..   ...+...+..+.|||||++|+..+.++     .|++||+.++  
T Consensus       230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~---~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~  306 (741)
T 1yr2_A          230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA---TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI  306 (741)
T ss_dssp             C--------CCCCCEEEEEETTSCGGGCEEEEC---CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred             cccccccccCCCCCEEEEEECCCCchhCEEEec---cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence            3              888888665432111111   111223578999999999988876543     8999999876  


Q ss_pred             eEEeeccccCCceeEEEEcCCCCEEEEecCC----CcEEEEEccCC-cEEEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  219 (261)
                      +....+..+....... ++|+|+.|+..+.+    +.|.+||+.++ .....+..+....+..+.|+ ++..     +++
T Consensus       307 ~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~l-----v~~  379 (741)
T 1yr2_A          307 GPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRL-----FAS  379 (741)
T ss_dssp             CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEE-----EEE
T ss_pred             cccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEE-----EEE
Confidence            3023333444444444 34888888877653    45999999875 23344444444456677776 3333     355


Q ss_pred             eCCCcEEEEEECC-CCeEEeeeec-cCcCeeEEEEeeCCCEEe
Q 024868          220 RGDKALLAVYDIS-TWNKIGHKRL-LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       220 ~~~d~~i~~~d~~-~~~~~~~~~~-~~~~v~~~~~s~dg~~la  260 (261)
                      ...++..++|.+. +++....+.. ....+..+.++||++.|+
T Consensus       380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred             EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence            5566665555443 3454444543 346788899999998665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=2.7e-14  Score=110.63  Aligned_cols=206  Identities=11%  Similarity=-0.036  Sum_probs=137.0

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC  117 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~  117 (261)
                      .|..+|+.+.++.........-.........+.+. +++.+++...++.|.+||..+.+....+        ........
T Consensus        18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--------~~~~~p~~   88 (328)
T 3dsm_A           18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--------TGFTSPRY   88 (328)
T ss_dssp             EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--------ECCSSEEE
T ss_pred             eEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--------CCCCCCcE
Confidence            78888998877522100000000112345677774 3444455556789999999887652221        22356789


Q ss_pred             EEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-----CceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEEE
Q 024868          118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTF  191 (261)
Q Consensus       118 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~  191 (261)
                      ++++++++.+++...++.|.+||..+++....+....     .....+++ .+++.+++.. .++.|.++|..+++.+..
T Consensus        89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~  167 (328)
T 3dsm_A           89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE  167 (328)
T ss_dssp             EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred             EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE
Confidence            9999999555554478999999999888655443322     14566777 4444444443 488999999999998887


Q ss_pred             EeecCCCceEEEEEecCCCcceEEEEEeeCCC----------cEEEEEECCCCeEEeeeecc-CcCeeEEEEeeCCCEEe
Q 024868          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK----------ALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLA  260 (261)
Q Consensus       192 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d----------~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~dg~~la  260 (261)
                      +....  ....++++|+|+.     .++...+          +.|.++|..+++....+... ......++|+||+++|.
T Consensus       168 i~~g~--~p~~i~~~~dG~l-----~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly  240 (328)
T 3dsm_A          168 LTIGI--QPTSLVMDKYNKM-----WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY  240 (328)
T ss_dssp             EECSS--CBCCCEECTTSEE-----EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE
T ss_pred             EEcCC--CccceEEcCCCCE-----EEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE
Confidence            76432  3678899999985     2444333          78999999998877655532 34678999999998775

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.66  E-value=1.6e-13  Score=106.22  Aligned_cols=221  Identities=11%  Similarity=0.001  Sum_probs=141.7

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcE
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   87 (261)
                      .+.+|+|+  ...+++++..++        .|+.||+.++..      . .+. ....+.+++++|+|+++++. .++ |
T Consensus        52 egp~~~~~--~~~l~~~d~~~~--------~i~~~d~~~~~~------~-~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l  111 (326)
T 2ghs_A           52 EGPTFDPA--SGTAWWFNILER--------ELHELHLASGRK------T-VHA-LPFMGSALAKISDSKQLIAS-DDG-L  111 (326)
T ss_dssp             EEEEEETT--TTEEEEEEGGGT--------EEEEEETTTTEE------E-EEE-CSSCEEEEEEEETTEEEEEE-TTE-E
T ss_pred             cCCeEeCC--CCEEEEEECCCC--------EEEEEECCCCcE------E-EEE-CCCcceEEEEeCCCeEEEEE-CCC-E
Confidence            45678764  356677776667        899999887653      1 121 23578999999999877654 444 8


Q ss_pred             EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc------CCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      ++||..++... .+. . .........+.+++++|+|+++++...      .+.|+.++  +++.. .+.........++
T Consensus       112 ~~~d~~~g~~~-~~~-~-~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~  185 (326)
T 2ghs_A          112 FLRDTATGVLT-LHA-E-LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSIC  185 (326)
T ss_dssp             EEEETTTCCEE-EEE-C-SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEE
T ss_pred             EEEECCCCcEE-EEe-e-CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeE
Confidence            99998766531 111 0 000011245789999999987665432      24566666  44432 2222233567899


Q ss_pred             EcCCCCEEEEe-cCCCcEEEEEcc--CC-cEE--EEEee--cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          162 FSLDSEFLATT-STDGSARIWKTE--DG-VAW--TFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       162 ~s~~~~~l~~~-~~d~~i~iwd~~--~~-~~~--~~~~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      |+||++.++.+ +.++.|.+||+.  ++ +..  ..+..  .....+..++++++|..     .++...++.|..||. +
T Consensus       186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l-----wva~~~~~~v~~~d~-~  259 (326)
T 2ghs_A          186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-----WNARWGEGAVDRYDT-D  259 (326)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-----EEEEETTTEEEEECT-T
T ss_pred             EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE-----EEEEeCCCEEEEECC-C
Confidence            99999876554 557899999986  55 321  12211  11234778999999975     233434568999998 5


Q ss_pred             CeEEeeeeccCcCeeEEEEe-eCCCEEe
Q 024868          234 WNKIGHKRLLRKPASVLSIS-LDGKYLA  260 (261)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s-~dg~~la  260 (261)
                      ++.+..+......+.+++|+ ||++.|.
T Consensus       260 g~~~~~i~~~~~~~~~~af~g~d~~~L~  287 (326)
T 2ghs_A          260 GNHIARYEVPGKQTTCPAFIGPDASRLL  287 (326)
T ss_dssp             CCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             CCEEEEEECCCCCcEEEEEecCCCCEEE
Confidence            66666666666678999999 8887664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=5e-14  Score=105.85  Aligned_cols=200  Identities=8%  Similarity=0.002  Sum_probs=135.4

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      .+.++++.++   .++.++.. ++        .|+.||+.+...      ..........+..++++++|+.+++...++
T Consensus        68 ~p~~i~~~~~---g~l~v~~~-~~--------~i~~~d~~~~~~------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  129 (270)
T 1rwi_B           68 QPQGLAVDGA---GTVYVTDF-NN--------RVVTLAAGSNNQ------TVLPFDGLNYPEGLAVDTQGAVYVADRGNN  129 (270)
T ss_dssp             SCCCEEECTT---CCEEEEET-TT--------EEEEECTTCSCC------EECCCCSCSSEEEEEECTTCCEEEEEGGGT
T ss_pred             CcceeEECCC---CCEEEEcC-CC--------EEEEEeCCCceE------eeeecCCcCCCcceEECCCCCEEEEECCCC
Confidence            4556777653   34555544 55        788899876543      111112235688999999998777766678


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCC
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD  165 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~  165 (261)
                      .|.+|+..+...  .     .........+.+++++|+|+++++...++.|.+||................+..++++++
T Consensus       130 ~i~~~~~~~~~~--~-----~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  202 (270)
T 1rwi_B          130 RVVKLAAGSKTQ--T-----VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  202 (270)
T ss_dssp             EEEEECTTCCSC--E-----ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             EEEEEECCCcee--E-----eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCC
Confidence            899986433321  0     011112245678999999997777767889999998766554333333356889999999


Q ss_pred             CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       166 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      |+++++...++.|.+||........ ........+.+++++|+|+.     .++...++.|++|++...+.
T Consensus       203 g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l-----~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          203 GTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTV-----YVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCE-----EEEEGGGTEEEEECCCGGGS
T ss_pred             CCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCE-----EEEECCCCEEEEEcCCCccc
Confidence            9877877778899999987654432 22222235889999999975     46777889999999876543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.65  E-value=5.1e-13  Score=106.41  Aligned_cols=225  Identities=9%  Similarity=-0.010  Sum_probs=145.3

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      ....++|.++   .+++++...++        .|+.||+.++.+      ...... ..... ++|+|+++.|+++..++
T Consensus       132 ~P~~la~d~~---g~lyv~d~~~~--------~I~~id~~~g~~------~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~  192 (409)
T 3hrp_A          132 YMWGIAAVGN---NTVLAYQRDDP--------RVRLISVDDNKV------TTVHPG-FKGGK-PAVTKDKQRVYSIGWEG  192 (409)
T ss_dssp             CEEEEEECST---TEEEEEETTTT--------EEEEEETTTTEE------EEEEET-CCBCB-CEECTTSSEEEEEBSST
T ss_pred             CceEEEEeCC---CCEEEEecCCC--------cEEEEECCCCEE------EEeecc-CCCCc-eeEecCCCcEEEEecCC
Confidence            4567888764   45777766666        899999987664      222222 23344 99999999988887765


Q ss_pred             --cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee----ccccCCce-e
Q 024868           86 --GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----EPKAHKSV-L  158 (261)
Q Consensus        86 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~v-~  158 (261)
                        .|.+++......... ... . .......+.+++++|++..|+++..++.|+.||..++.....    .......- .
T Consensus       193 ~~~I~~~d~~~~~~~~~-~g~-~-~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~  269 (409)
T 3hrp_A          193 THTVYVYMKASGWAPTR-IGQ-L-GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPG  269 (409)
T ss_dssp             TCEEEEEEGGGTTCEEE-EEE-C-CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred             CceEEEEEcCCCceeEE-eee-c-cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCcc
Confidence              677777765442111 100 0 011235567899999544455566788999999877654322    11222222 3


Q ss_pred             -EEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecC--------------CCceEEEEEecCCCcceEEEEEeeC-
Q 024868          159 -DMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------------DEKIELCRFSKDGTKPFLFCTVQRG-  221 (261)
Q Consensus       159 -~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~v~~~~~~p~~~~~~~~~~~~~~-  221 (261)
                       .++|+|+ +.++++-..++.|+.|+....  +..+....              -.....++++|+|+.     .++.. 
T Consensus       270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l-----yvad~~  342 (409)
T 3hrp_A          270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF-----YIVDGF  342 (409)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE-----EEEETT
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE-----EEEeCC
Confidence             9999995 666666667889999987643  33333321              123789999999985     35666 


Q ss_pred             CCcEEEEEECCCCeEEeeeecc---------------CcCeeEEEEeeCCCEEe
Q 024868          222 DKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       222 ~d~~i~~~d~~~~~~~~~~~~~---------------~~~v~~~~~s~dg~~la  260 (261)
                      .++.|+.||+.+++.. .+...               -.....++++++|++++
T Consensus       343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyV  395 (409)
T 3hrp_A          343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWI  395 (409)
T ss_dssp             TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEE
T ss_pred             CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEE
Confidence            7889999998877653 33332               13578899999987654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.64  E-value=2.8e-13  Score=103.85  Aligned_cols=222  Identities=14%  Similarity=0.079  Sum_probs=142.7

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      .....+|.|+  +..+++++..++        .++.|++.. ..       ..+..+...+..++++++|+.+++...++
T Consensus        46 ~~egp~~~~~--g~~l~~~d~~~~--------~i~~~~~~g-~~-------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~  107 (305)
T 3dr2_A           46 WSEGPAWWEA--QRTLVWSDLVGR--------RVLGWREDG-TV-------DVLLDATAFTNGNAVDAQQRLVHCEHGRR  107 (305)
T ss_dssp             SEEEEEEEGG--GTEEEEEETTTT--------EEEEEETTS-CE-------EEEEESCSCEEEEEECTTSCEEEEETTTT
T ss_pred             CccCCeEeCC--CCEEEEEECCCC--------EEEEEeCCC-CE-------EEEeCCCCccceeeECCCCCEEEEECCCC
Confidence            3456778875  345777777777        889998743 32       12334556789999999999666655557


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE----ecc-------------CCeEEEEEccCceEEe
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GGV-------------DGHLRIMHWPSLRIIL  148 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~~-------------d~~i~~~d~~~~~~~~  148 (261)
                      .|.+|+.. +.. ..+....  .-.....+.+++++|+|++.++    +..             .+.|+.+|..+++...
T Consensus       108 ~v~~~~~~-g~~-~~~~~~~--~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~  183 (305)
T 3dr2_A          108 AITRSDAD-GQA-HLLVGRY--AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR  183 (305)
T ss_dssp             EEEEECTT-SCE-EEEECEE--TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred             EEEEECCC-CCE-EEEEecc--CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence            79998875 322 1111110  0011245678999999998876    331             2467778876665433


Q ss_pred             eccccCCceeEEEEcCCCCEEEEecCC------CcEEEEEccCCcEE--EEEeecCCCceEEEEEecCCCcceEEEEEee
Q 024868          149 DEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       149 ~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                      ..  .......++|+||++.|+.+...      +.|++|++..+...  ..+.......+..++++++|+.      ..+
T Consensus       184 ~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l------wv~  255 (305)
T 3dr2_A          184 MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL------WSS  255 (305)
T ss_dssp             EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE------EEC
T ss_pred             Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE------EEe
Confidence            22  33456789999999977776554      68999998765421  1121111223567899999995      333


Q ss_pred             CCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ..+ .|.+||. .++.+..+.... .+..++|+|+++.|.
T Consensus       256 ~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~  292 (305)
T 3dr2_A          256 SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLF  292 (305)
T ss_dssp             CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred             cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEE
Confidence            344 4999998 466666665544 588999999988664

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=5e-12  Score=96.19  Aligned_cols=224  Identities=9%  Similarity=-0.020  Sum_probs=149.1

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+.++++.++   ..+.++...++        .|..+|+. ..+.     ...+..+...+.++++.++++.+++...+
T Consensus        20 ~~p~~i~~d~~---g~l~v~~~~~~--------~v~~~~~~-~~~~-----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~   82 (300)
T 2qc5_A           20 SGPYGITSSED---GKVWFTQHKAN--------KISSLDQS-GRIK-----EFEVPTPDAKVMCLIVSSLGDIWFTENGA   82 (300)
T ss_dssp             CCEEEEEECTT---SCEEEEETTTT--------EEEEECTT-SCEE-----EEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCcceeeECCC---CCEEEEcCCCC--------eEEEECCC-CceE-----EEECCCCCCcceeEEECCCCCEEEEecCC
Confidence            35566777653   44666555566        88889887 4431     22233444678999999999877766557


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s  163 (261)
                      +.|..||.. +.. ...     ........+.+++++++|+++++...++.|..+|.. ++.... .......+..++++
T Consensus        83 ~~v~~~d~~-g~~-~~~-----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d  154 (300)
T 2qc5_A           83 NKIGKLSKK-GGF-TEY-----PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG  154 (300)
T ss_dssp             TEEEEECTT-SCE-EEE-----ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred             CeEEEECCC-CCe-EEe-----cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence            889998876 332 111     111123568899999999888877668889999976 554322 22233468999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eec
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL  242 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~  242 (261)
                      ++|+++++...++.|..+|. +++............+..++++++|+.     .++....+.|.+||. +++.... ...
T Consensus       155 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~  227 (300)
T 2qc5_A          155 SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGAL-----WFVEIMGNKIGRITT-TGEISEYDIPT  227 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCE-----EEEccCCCEEEEEcC-CCcEEEEECCC
Confidence            99997777766788999998 566543222122235889999999875     355556678999998 4554322 222


Q ss_pred             cCcCeeEEEEeeCCCEEe
Q 024868          243 LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la  260 (261)
                      ....+.+++++++|+..+
T Consensus       228 ~~~~~~~i~~d~~g~l~v  245 (300)
T 2qc5_A          228 PNARPHAITAGKNSEIWF  245 (300)
T ss_dssp             TTCCEEEEEECSTTCEEE
T ss_pred             CCCCceEEEECCCCCEEE
Confidence            345678999999988554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=6.3e-12  Score=95.65  Aligned_cols=224  Identities=8%  Similarity=0.028  Sum_probs=146.7

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+.++++.++   ..+.++...++        .|+.+|+. +..     ....+......+.++++.++|+.+++...+
T Consensus        62 ~~~~~i~~~~~---g~l~v~~~~~~--------~v~~~d~~-g~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  124 (300)
T 2qc5_A           62 AKVMCLIVSSL---GDIWFTENGAN--------KIGKLSKK-GGF-----TEYPLPQPDSGPYGITEGLNGDIWFTQLNG  124 (300)
T ss_dssp             CCEEEEEECTT---SCEEEEETTTT--------EEEEECTT-SCE-----EEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             CcceeEEECCC---CCEEEEecCCC--------eEEEECCC-CCe-----EEecCCCCCCCCccceECCCCCEEEEccCC
Confidence            34566666543   44555555456        78889887 442     122333344678999999999877776657


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEee-ccccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s  163 (261)
                      +.|..++.. +... ..     ........+..+++++++++.++...++.|..+|. +++.... .......+..++++
T Consensus       125 ~~i~~~~~~-g~~~-~~-----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d  196 (300)
T 2qc5_A          125 DRIGKLTAD-GTIY-EY-----DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG  196 (300)
T ss_dssp             TEEEEECTT-SCEE-EE-----ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             CeEEEECCC-CCEE-Ec-----cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC
Confidence            788888876 3321 10     01112356789999999997766666788999997 5544322 22233468899999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee-eec
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL  242 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~  242 (261)
                      ++|++.++....+.|.+||. +++............+.+++++++|+.     .++...++.|..||. +++.... ...
T Consensus       197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~  269 (300)
T 2qc5_A          197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEI-----WFTEWGANQIGRITN-DNTIQEYQLQT  269 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCE-----EEEETTTTEEEEECT-TSCEEEEECCS
T ss_pred             CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCE-----EEeccCCCeEEEECC-CCcEEEEECCc
Confidence            99987777777788999998 555443322222335889999999985     355556788999998 4543321 222


Q ss_pred             cCcCeeEEEEeeCCCEEe
Q 024868          243 LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la  260 (261)
                      ....+.+++++++|+..+
T Consensus       270 ~~~~~~~i~~~~~g~l~v  287 (300)
T 2qc5_A          270 ENAEPHGITFGKDGSVWF  287 (300)
T ss_dssp             TTCCCCCEEECTTSCEEE
T ss_pred             cCCccceeEeCCCCCEEE
Confidence            345678999999998654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.60  E-value=3.2e-14  Score=111.60  Aligned_cols=109  Identities=11%  Similarity=0.037  Sum_probs=77.7

Q ss_pred             CCCeEEEEe------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec----------cCCeEE
Q 024868           74 SGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------VDGHLR  137 (261)
Q Consensus        74 ~~~~l~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~  137 (261)
                      +++++++..      .|+.|++||..+++....+     .  .+..+  .++|+|||+++++++          .++.|.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-----~--~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~   84 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-----P--TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVE   84 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-----E--CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-----c--CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEE
Confidence            566666543      3678999998776542111     1  11222  899999999999886          256799


Q ss_pred             EEEccCceEEeecccc------CCceeEEEEcCCCCEEEEecC--CCcEEEEEccCCcEEEE
Q 024868          138 IMHWPSLRIILDEPKA------HKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTF  191 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~  191 (261)
                      +||..+.+.+..+...      ......++++|||++|+++..  ++.|.+||+.+++.+..
T Consensus        85 v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A           85 VWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             EEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             EEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            9999888776554322      234678999999999998763  57899999988776655

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.60  E-value=1.6e-12  Score=107.39  Aligned_cols=234  Identities=8%  Similarity=0.022  Sum_probs=151.1

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCC--CCceecCCeEEeeecCCCCCceEEEEC----CCCCeEE
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK--TTSVYTSPLVTYVFDESEGDPMTIAVN----PSGDDFV   79 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~   79 (261)
                      .+..++++|+   ..++.+++.++        .|..||..  +.+.      ...+.. ......++|+    |||++++
T Consensus       198 ~p~~v~~SpD---Gr~lyv~~~dg--------~V~viD~~~~t~~~------v~~i~~-G~~P~~ia~s~~~~pDGk~l~  259 (567)
T 1qks_A          198 AVHISRLSAS---GRYLFVIGRDG--------KVNMIDLWMKEPTT------VAEIKI-GSEARSIETSKMEGWEDKYAI  259 (567)
T ss_dssp             CEEEEEECTT---SCEEEEEETTS--------EEEEEETTSSSCCE------EEEEEC-CSEEEEEEECCSTTCTTTEEE
T ss_pred             CccceEECCC---CCEEEEEcCCC--------eEEEEECCCCCCcE------eEEEec-CCCCceeEEccccCCCCCEEE
Confidence            4567888885   44555566677        88999985  4432      223332 2346799999    6999988


Q ss_pred             EEec-CCcEEEEEEeCCccccceeeeeCCC----CCCCCCeEEEEEeeCCcE-EEEeccCCeEEEEEccCceEEe-eccc
Q 024868           80 CSTT-NGGCKLFEVYGGATDINLLAKKMPP----LQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIIL-DEPK  152 (261)
Q Consensus        80 ~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~-~~~~  152 (261)
                      +++. ++++.++|..+.+............    ......+..+..++++.. ++....+|.|.++|..+.+... ....
T Consensus       260 v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~  339 (567)
T 1qks_A          260 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS  339 (567)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE
T ss_pred             EEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee
Confidence            7766 4899999987765432221111000    011236788888987654 4455577999999987654221 1122


Q ss_pred             cCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEEEEee-cCC-CceEEEE-EecCCCcceEEEEEeeCCCcEEEE
Q 024868          153 AHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTR-NSD-EKIELCR-FSKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       153 ~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~-~~v~~~~-~~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                      ......++.|+|+|++++++. .++.|.++|+.+++.+..+.. ... .+-+.+. ++|++..++   +...-.++.|.+
T Consensus       340 ~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~---~t~~~g~~~Vsv  416 (567)
T 1qks_A          340 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW---ATSHMGDDSVAL  416 (567)
T ss_dssp             CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE---EEEBSSSSEEEE
T ss_pred             ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEE---EeCCCCCCeEEE
Confidence            233577899999999887655 578999999999998877764 211 1112233 588866532   122335678999


Q ss_pred             EECCC-------CeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          229 YDIST-------WNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       229 ~d~~~-------~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +|..+       ++.+..+......-..+..+||+++|.
T Consensus       417 id~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~  455 (567)
T 1qks_A          417 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY  455 (567)
T ss_dssp             EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred             ecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEE
Confidence            99987       677777665544445688999999875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.58  E-value=9.1e-12  Score=97.93  Aligned_cols=207  Identities=8%  Similarity=-0.007  Sum_probs=120.0

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe----------cCCcEEEEEEeCCccccceeeeeCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP  107 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~~  107 (261)
                      .+..+|..+.++      ...++.... . .++++|||++++++.          .++.|.+||..+.+...........
T Consensus        48 ~v~v~D~~t~~~------~~~i~~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~  119 (373)
T 2mad_H           48 QQWVLDAGSGSI------LGHVNGGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP  119 (373)
T ss_pred             EEEEEECCCCeE------EEEecCCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc
Confidence            678889887764      223332222 3 899999999998876          2577999999876542221110000


Q ss_pred             CCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEccCceEEee-ccccCCceeEEEEcCCC-CEEEEecCCC-------
Q 024868          108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDS-EFLATTSTDG-------  176 (261)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~-~~l~~~~~d~-------  176 (261)
                      ..........+.|+|||++|++++.  ++.|.++| .+++.+.. +... ..   +.+.|++ +.+++.+.||       
T Consensus       120 ~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          120 RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             ccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCceEEEEcCCCCEEEEEC
Confidence            0001123457999999999998864  47899999 98887655 4321 11   1222222 1222223333       


Q ss_pred             ----------------------------------------cEEEEEccCCc--EEEEEeecC---------CCceEEEEE
Q 024868          177 ----------------------------------------SARIWKTEDGV--AWTFLTRNS---------DEKIELCRF  205 (261)
Q Consensus       177 ----------------------------------------~i~iwd~~~~~--~~~~~~~~~---------~~~v~~~~~  205 (261)
                                                              .+.+.|+.++.  .+..+....         ......+.+
T Consensus       195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~  274 (373)
T 2mad_H          195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY  274 (373)
T ss_pred             CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence                                                    34444443221  111111000         011233678


Q ss_pred             ecCCCcceEEEEEeeC-------CCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC-EEe
Q 024868          206 SKDGTKPFLFCTVQRG-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLA  260 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la  260 (261)
                      +|+++.+|+.  ....       ..+.|.++|+.+++.+..+.. ......++|+|||+ .++
T Consensus       275 s~d~~~lyV~--~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~  334 (373)
T 2mad_H          275 LKSSDGIYLL--TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLY  334 (373)
T ss_pred             CCCCCEEEEE--eccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEE
Confidence            8888874421  1111       246899999999998877753 34678999999999 443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.57  E-value=7.8e-14  Score=109.16  Aligned_cols=174  Identities=10%  Similarity=-0.023  Sum_probs=120.4

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCc--e-----ecCCeEEeeecCCCCCceEEEECCCCCe
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS--V-----YTSPLVTYVFDESEGDPMTIAVNPSGDD   77 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~   77 (261)
                      .++..+++++.   ..++++|+.++         +..|+.+...  .     ...+...   ..+.. |+.++|  |+++
T Consensus        38 ~~~nlLais~~---~gll~a~~~~~---------l~v~~~~~l~~~~~~~~~~~~~~~~---~~lp~-V~~l~f--d~~~   99 (388)
T 1xip_A           38 ASLQNLDISNS---KSLFVAASGSK---------AVVGELQLLRDHITSDSTPLTFKWE---KEIPD-VIFVCF--HGDQ   99 (388)
T ss_dssp             SCCBCEEEETT---TTEEEEEETTE---------EEEEEHHHHHHHHHSSSCCCCCSEE---EECTT-EEEEEE--ETTE
T ss_pred             ccccEEEEcCC---CCEEEEeCCCE---------EEEEEhhHhhhhhccccccccceEE---eeCCC-eeEEEE--CCCE
Confidence            36888889885   45677776655         3335433221  0     0122222   23455 999999  9999


Q ss_pred             EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCce
Q 024868           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (261)
Q Consensus        78 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  157 (261)
                      |+++ .++.|++||+.+.......       ..+..++.++.+.+.  .+++++.||.+.+||+.++....    ....|
T Consensus       100 L~v~-~~~~l~v~dv~sl~~~~~~-------~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~V  165 (388)
T 1xip_A          100 VLVS-TRNALYSLDLEELSEFRTV-------TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNV  165 (388)
T ss_dssp             EEEE-ESSEEEEEESSSTTCEEEE-------EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESE
T ss_pred             EEEE-cCCcEEEEEchhhhccCcc-------ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCc
Confidence            9998 8899999999876532211       112345777776654  38888899999999998776542    33579


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEEccCCcE--EEEEee--------cCCCceEEEEEecCCCcc
Q 024868          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTR--------NSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~--------~~~~~v~~~~~~p~~~~~  212 (261)
                      .+++|||+|  ++.+..||.+++|+...++.  ..++..        .+...|.++.|.++++++
T Consensus       166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl  228 (388)
T 1xip_A          166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL  228 (388)
T ss_dssp             EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred             eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence            999999999  67788899999999887775  555621        124579999999988874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=2.8e-13  Score=102.20  Aligned_cols=170  Identities=7%  Similarity=-0.044  Sum_probs=127.9

Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      .++.|++++.++.|++||.++++...+...      .....+.++.++|+|+++++  .++.|..||. +++.+..+..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~------~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL------EKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC------CTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC------CccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCC
Confidence            457888999999999999978875333221      11135788999999998883  4778999998 88888777654


Q ss_pred             C-CceeEEEEcCCCCEEEEecC-CCcEEEEEccCCcEEEEEeecCC-----CceEEEEEecCCCcceEEEEEeeCCCcEE
Q 024868          154 H-KSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       154 ~-~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~~~~~~~~~~~d~~i  226 (261)
                      . ..+.++.+.|+|+++++.+. ++.+..+|. +|+.+..+.....     .....+++.++|++     +++...++.|
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-----lv~~~~~~~v  148 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY-----LVPLFATSEV  148 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE-----EEEETTTTEE
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE-----EEEecCCCEE
Confidence            3 46889999999999998877 778888885 7887777653211     13556678999997     5778889999


Q ss_pred             EEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       227 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ..||.. |+.+..+... ..+.++.+.++|+.++
T Consensus       149 ~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v  180 (276)
T 3no2_A          149 REIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLV  180 (276)
T ss_dssp             EEECTT-SCEEEEEECS-SCCCEEEECTTSCEEE
T ss_pred             EEECCC-CCEEEEEECC-CCccceeEcCCCCEEE
Confidence            999998 8888766544 4456677788888765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.55  E-value=5.6e-12  Score=99.27  Aligned_cols=225  Identities=16%  Similarity=0.149  Sum_probs=142.3

Q ss_pred             cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec------C-CCCCceEEEECCCCCeEEEEecC------
Q 024868           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD------E-SEGDPMTIAVNPSGDDFVCSTTN------   84 (261)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------   84 (261)
                      ...+++.|..++        +|+++|..+...  .+.....+.      . .......+..+|+| .++++..+      
T Consensus        95 r~~l~v~~l~s~--------~I~viD~~t~p~--~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~  163 (462)
T 2ece_A           95 RRFLIVPGLRSS--------RIYIIDTKPNPR--EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP  163 (462)
T ss_dssp             SCEEEEEBTTTC--------CEEEEECCSCTT--SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred             CCEEEEccCCCC--------eEEEEECCCCCC--CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence            466677777776        889998754321  122232331      1 11246678899999 66665554      


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-------------------cCCeEEEEEccCce
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------------------VDGHLRIMHWPSLR  145 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------------------~d~~i~~~d~~~~~  145 (261)
                      |.+.++|..+.+...+....    ......-+.+.|+|+++.+++..                   ...+|.+||+.+++
T Consensus       164 g~v~vlD~~T~~v~~~~~~~----~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k  239 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEID----RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK  239 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSB----CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred             CeEEEEECCCCeEEEEEccC----CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence            68999999887753222111    01112335688999999888874                   36789999999887


Q ss_pred             EEeecccc-C-CceeEEEE--cCCCCEEEEec------CCCcEEEEEccCCcE--EEEE--eec--C-------------
Q 024868          146 IILDEPKA-H-KSVLDMDF--SLDSEFLATTS------TDGSARIWKTEDGVA--WTFL--TRN--S-------------  196 (261)
Q Consensus       146 ~~~~~~~~-~-~~v~~~~~--s~~~~~l~~~~------~d~~i~iwd~~~~~~--~~~~--~~~--~-------------  196 (261)
                      .+..+... . .....+.|  +|++++++.++      .+++|.+|..+.++.  .+.+  ...  .             
T Consensus       240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            66555432 1 23556656  99999888766      456888877665432  1111  110  0             


Q ss_pred             CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC---CeEEeeeeccC--------------cCeeEEEEeeCCCEE
Q 024868          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLR--------------KPASVLSISLDGKYL  259 (261)
Q Consensus       197 ~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~---~~~~~~~~~~~--------------~~v~~~~~s~dg~~l  259 (261)
                      ......+.+||||+++|    ++.-..+.|.+||+..   .+.+..+...+              +....++++|||++|
T Consensus       320 ~~~pa~I~lS~DGrfLY----VSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L  395 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLY----LSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV  395 (462)
T ss_dssp             CCCCCCEEECTTSCEEE----EEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred             CCceeEEEECCCCCEEE----EEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence            12367899999999854    4555567999999852   34554444321              136889999999988


Q ss_pred             eC
Q 024868          260 AM  261 (261)
Q Consensus       260 a~  261 (261)
                      .+
T Consensus       396 yV  397 (462)
T 2ece_A          396 YV  397 (462)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.55  E-value=7.2e-13  Score=105.08  Aligned_cols=203  Identities=11%  Similarity=0.036  Sum_probs=131.1

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe----------cCCcEEEEEEeCCccccceeeeeCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP  107 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~~  107 (261)
                      .|..+|..+.+.      ...++--..+  .++++|||++++++.          .++.|.++|..+.+....+......
T Consensus       100 ~VsVID~~t~~v------v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~  171 (426)
T 3c75_H          100 QQFVIDGSTGRI------LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP  171 (426)
T ss_dssp             EEEEEETTTTEE------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             eEEEEECCCCEE------EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence            889999988875      2233322233  899999999998876          3578999999887653322111000


Q ss_pred             CCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEccCceEEeeccccC-------------------------------
Q 024868          108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAH-------------------------------  154 (261)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~-------------------------------  154 (261)
                      ..........+.|+|||++++++..  ++.|.+.|+.+++.+..+....                               
T Consensus       172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v  251 (426)
T 3c75_H          172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGET  251 (426)
T ss_dssp             CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCC
T ss_pred             ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcE
Confidence            0000123456899999999888763  5789999987765432211100                               


Q ss_pred             -------------------------------------------------------------------CceeEEEEcCCCC
Q 024868          155 -------------------------------------------------------------------KSVLDMDFSLDSE  167 (261)
Q Consensus       155 -------------------------------------------------------------------~~v~~~~~s~~~~  167 (261)
                                                                                         .....++++|+++
T Consensus       252 ~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~  331 (426)
T 3c75_H          252 KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD  331 (426)
T ss_dssp             EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred             EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence                                                                               0000156677767


Q ss_pred             EEEEecC----------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC-cceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          168 FLATTST----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-KPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       168 ~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      .+++...          ++.|.++|+.+.+.+.++....  ....++|+|||+ ++    .++...++.|.++|+.+++.
T Consensus       332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~l----yv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLL----YALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEE----EEEETTTTEEEEEETTTCCE
T ss_pred             EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEE----EEEcCCCCeEEEEECCCCCE
Confidence            6665432          3469999999999988887543  378999999999 52    24444689999999999999


Q ss_pred             EeeeeccCcCeeEEEEeeC
Q 024868          237 IGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~d  255 (261)
                      +..+...+... .+.++||
T Consensus       406 v~tI~~vG~~P-~~i~~~~  423 (426)
T 3c75_H          406 LRSVDQLGRGP-QIITTHD  423 (426)
T ss_dssp             EEEECCCSSSC-CEEECCC
T ss_pred             EEEecCCCCCC-cEEEcCC
Confidence            87763222222 2556665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=1.3e-11  Score=105.86  Aligned_cols=214  Identities=10%  Similarity=0.078  Sum_probs=131.8

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCC------CCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRAS------SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      ..++|+|+    ..++.+..++..      ......+|+.++..+...  ..........+...+..+.|+|||++|+..
T Consensus       212 ~~~~wspD----~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~  285 (741)
T 1yr2_A          212 SGLAWLGN----DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS--ADQPVFATPELPKRGHGASVSSDGRWVVIT  285 (741)
T ss_dssp             CCCEESTT----SEEEEEECCCC--------CCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             ccEEEECC----CEEEEEEecCcccccccccCCCCCEEEEEECCCCch--hCEEEeccCCCCeEEEEEEECCCCCEEEEE
Confidence            46778874    345544443310      011123688888765542  111222233344458899999999999877


Q ss_pred             ecCC-----cEEEEEEeCCccc-cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc----CCeEEEEEccCc--eEEee
Q 024868           82 TTNG-----GCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSL--RIILD  149 (261)
Q Consensus        82 ~~dg-----~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~--~~~~~  149 (261)
                      +.++     .|++||+.++... ...+.      .+....... ++|+|+.|+..+.    ++.|.+||+.++  +....
T Consensus       286 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~------~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l  358 (741)
T 1yr2_A          286 SSEGTDPVNTVHVARVTNGKIGPVTALI------PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV  358 (741)
T ss_dssp             EECTTCSCCEEEEEEEETTEECCCEEEE------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE
T ss_pred             EEccCCCcceEEEEECCCCCCcccEEec------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE
Confidence            7543     8999999876211 11111      112233333 4588988887764    345999998874  22222


Q ss_pred             ccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       150 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                      +..+...+..++|+ ++.++++...|+..+||.+. +++....+..+....+..+.++|+++.++ +...+....++|++
T Consensus       359 ~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~-~~~ss~~~P~~i~~  436 (741)
T 1yr2_A          359 VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY-LSFSSFTQPATVLA  436 (741)
T ss_dssp             ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE-EEEEETTEEEEEEE
T ss_pred             ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE-EEEcCCCCCCEEEE
Confidence            33333456678887 66777888888887777654 46666666544344588899999998732 22334566789999


Q ss_pred             EECCCCeE
Q 024868          229 YDISTWNK  236 (261)
Q Consensus       229 ~d~~~~~~  236 (261)
                      ||+.+++.
T Consensus       437 ~d~~tg~~  444 (741)
T 1yr2_A          437 LDPATAKT  444 (741)
T ss_dssp             EETTTTEE
T ss_pred             EECCCCcE
Confidence            99988764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.49  E-value=1.1e-10  Score=91.81  Aligned_cols=192  Identities=11%  Similarity=0.055  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCceecCCeEEeeec--C---CCCCceEEEECCCCCeEEEEec--CCcEEEEEEeCCccccc-eeeeeC-CC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFD--E---SEGDPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDIN-LLAKKM-PP  108 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~-~~~~~~-~~  108 (261)
                      .+..||..+.+.    .....+.  .   +......++|+|||++|++++.  ++.|.++| .+++.... ...... ..
T Consensus        98 ~v~viD~~t~~~----~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~  172 (373)
T 2mad_H           98 YVEVFDPVTFLP----IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHI  172 (373)
T ss_pred             eEEEEECCCCcE----EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEE
Confidence            577788876543    1111121  0   1134568999999999998874  47899999 87764222 100000 00


Q ss_pred             CC----------CCCC---------e-----------------EEEEEeeCCcEEEEeccCCeEEEEEccCceE--Eeec
Q 024868          109 LQ----------DAGP---------Q-----------------KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDE  150 (261)
Q Consensus       109 ~~----------~~~~---------v-----------------~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~  150 (261)
                      ..          ..+.         +                 ....+.+++..++..+..+.+.+.|+.....  ...+
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~  252 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence            00          0000         0                 0112333333323223455666666643321  1111


Q ss_pred             c--c--------cCCceeEEEEcCCCCEEEEecC----------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC
Q 024868          151 P--K--------AHKSVLDMDFSLDSEFLATTST----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (261)
Q Consensus       151 ~--~--------~~~~v~~~~~s~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~  210 (261)
                      .  .        .......+.++|+++.++....          ++.|.++|+.+++.+.++....  ...+++|+|||+
T Consensus       253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~  330 (373)
T 2mad_H          253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGG  330 (373)
T ss_pred             eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCC
Confidence            0  0        0112344788999888777543          3579999999999999886443  488999999999


Q ss_pred             cceEEEEEeeC-CCcEEEEEECCCCeEEeee
Q 024868          211 KPFLFCTVQRG-DKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       211 ~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~  240 (261)
                      ++    ++++. .++.|.+||+.+++.+..+
T Consensus       331 ~~----l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          331 PD----LYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             eE----EEEEcCCCCeEEEEECCCCCEEeee
Confidence            42    23444 5789999999999988763

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.48  E-value=5.1e-12  Score=107.43  Aligned_cols=230  Identities=10%  Similarity=0.025  Sum_probs=137.5

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+..++|+|+   ..++|.+...+  | .....|+.+|..+++..     ...+..  .....++|+ |++.|+.+..+
T Consensus       129 ~~l~~~~~SpD---g~~lAy~~~~~--G-~~~~~i~v~dl~tg~~~-----~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          129 TALDQLSFSRD---GRILAYSLSLA--G-SDWREIHLMDVESKQPL-----ETPLKD--VKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             CEEEEEEECTT---SSEEEEEEECS--S-CCEEEEEEEETTTCSEE-----EEEEEE--EESCCCEEE-TTTEEEEEESS
T ss_pred             EEEEEEEECCC---CCEEEEEEecC--C-CceEEEEEEECCCCCCC-----ccccCC--ceeccEEEe-CCCEEEEEEec
Confidence            35777788886   44555433222  1 11238999999887741     111211  113568899 99999988777


Q ss_pred             C-------------cEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEEeeCCcEEEEec----cCCeEEEEEccCce-
Q 024868           85 G-------------GCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGG----VDGHLRIMHWPSLR-  145 (261)
Q Consensus        85 g-------------~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~----~d~~i~~~d~~~~~-  145 (261)
                      .             .|++|++.+.......+..   ... +.....++.|+|||++|+...    ....++++|+.+++ 
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~  271 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG---AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA  271 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEES---CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEe---cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence            4             3888888766532222211   111 233467899999999886643    23589999987663 


Q ss_pred             EEeeccccCCceeEEEEcCCCCEEEEec-CC---CcEEEEEccCCcE--EEEEeecCCCceEEEEEecCCCcceEEEEEe
Q 024868          146 IILDEPKAHKSVLDMDFSLDSEFLATTS-TD---GSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d---~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  219 (261)
                      ....+..+....... |+++|..|+..+ .+   +.|..+|+.+++.  ...+..+... +.  .|++++++++    +.
T Consensus       272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv----~~  343 (693)
T 3iuj_A          272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLF----AE  343 (693)
T ss_dssp             CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEE----EE
T ss_pred             ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEE----EE
Confidence            223333344444444 666666555443 33   5799999987654  3445545443 43  8999999732    22


Q ss_pred             eCCC--cEEEEEECCCCeEEeeeec-cCcCeeEEEEeeCCCEEe
Q 024868          220 RGDK--ALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       220 ~~~d--~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~dg~~la  260 (261)
                      ...+  ..|++||+..+.. ..+.. ....+..+.++++++.|+
T Consensus       344 ~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~  386 (693)
T 3iuj_A          344 YMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALY  386 (693)
T ss_dssp             EEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEE
T ss_pred             EEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEE
Confidence            2233  3799999885543 33332 334566777888877654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=2.4e-11  Score=93.15  Aligned_cols=197  Identities=11%  Similarity=0.084  Sum_probs=126.5

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEee-ec---C-CCCCceEEEECCCCCeEE
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV-FD---E-SEGDPMTIAVNPSGDDFV   79 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~---~-~~~~v~~~~~~~~~~~l~   79 (261)
                      ..+.++++.++.  ..+.++. ...        .++.||.+ +.+      ... ..   . ....+.+++++++|+.++
T Consensus        71 ~~~~~i~~~~~~--g~l~v~~-~~~--------~l~~~d~~-g~~------~~~~~~~~~~~~~~~~~~i~~d~~g~l~v  132 (314)
T 1pjx_A           71 GIPAGCQCDRDA--NQLFVAD-MRL--------GLLVVQTD-GTF------EEIAKKDSEGRRMQGCNDCAFDYEGNLWI  132 (314)
T ss_dssp             CCEEEEEECSSS--SEEEEEE-TTT--------EEEEEETT-SCE------EECCSBCTTSCBCBCCCEEEECTTSCEEE
T ss_pred             CCCceEEEecCC--CcEEEEE-CCC--------CEEEEeCC-CCE------EEEEeccCCCccccCCcCEEECCCCCEEE
Confidence            345667776631  3344433 233        57788877 543      111 11   1 123588999999998777


Q ss_pred             EEecC---------------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEe----eCCcEEEEe-ccCCeEEEE
Q 024868           80 CSTTN---------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS----VDGSRFAAG-GVDGHLRIM  139 (261)
Q Consensus        80 ~~~~d---------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~-~~d~~i~~~  139 (261)
                      +...+               +.|..|+.. ++. ....       ........++|+    |+++.++++ ..++.|.+|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~  203 (314)
T 1pjx_A          133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSY  203 (314)
T ss_dssp             EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEE
T ss_pred             EecCcccccccccccccCCCCeEEEECCC-CCE-EEec-------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEE
Confidence            66544               345555443 221 1111       112346789999    999765554 567899999


Q ss_pred             Ecc-Cce-----EEeeccccC-CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868          140 HWP-SLR-----IILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       140 d~~-~~~-----~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      |.. +++     .......+. ..+..++++++|+++++...++.|.+||.++++.+..+..+.. .+.+++|+|+|+.+
T Consensus       204 ~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l  282 (314)
T 1pjx_A          204 DIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTI  282 (314)
T ss_dssp             EEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEE
T ss_pred             ECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEE
Confidence            976 343     112222222 5578899999999888877788999999987777666654433 58999999999853


Q ss_pred             eEEEEEeeCCCcEEEEEECCC
Q 024868          213 FLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~  233 (261)
                          .++...++.|..|++..
T Consensus       283 ----~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          283 ----FVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ----EEEETTTTEEEEEECSS
T ss_pred             ----EEEeCCCCeEEEEeCCC
Confidence                35556678899999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=2.9e-11  Score=94.18  Aligned_cols=237  Identities=8%  Similarity=-0.079  Sum_probs=138.1

Q ss_pred             eeeEEEEEeeCCcceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-
Q 024868            6 TVTCGSWIKRPENVNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-   83 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-   83 (261)
                      .+..++++++   ..++++.. .++  +  . ..|+.++  ++.+..-+........|-..+..++++++++.+++-.. 
T Consensus        18 ~p~~va~~~~---g~~~v~~~~~~~--~--~-~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~   87 (343)
T 2qe8_A           18 APGNITLTPD---GRLFLSLHQFYQ--P--E-MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN   87 (343)
T ss_dssp             CEEEEEECTT---SCEEEEECGGGC--C--S-CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred             CcceEEECCC---CCEEEEeCCCCC--C--c-eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence            4566777664   44555532 111  0  1 3677776  33321111000112235567999999999876665433 


Q ss_pred             ----CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEE-EEec---cCCeEEEEEccCceEEeecccc--
Q 024868           84 ----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGG---VDGHLRIMHWPSLRIILDEPKA--  153 (261)
Q Consensus        84 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~---~d~~i~~~d~~~~~~~~~~~~~--  153 (261)
                          ++.|.+||+.+++....... ......+...+..++++|++..+ ++-.   .++.|.+||+.+++.......+  
T Consensus        88 ~~~~~~~i~~~d~~tg~~~~~~~~-~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~  166 (343)
T 2qe8_A           88 QSKSVPKLVAWDTLNNQLSRVIYL-PPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG  166 (343)
T ss_dssp             HHTSCCEEEEEETTTTEEEEEEEC-CTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred             CcCCCCeEEEEECCCCeEEEEEEC-ChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence                57899999987663222111 01111223456899999865444 4444   5788999999877654332211  


Q ss_pred             ---------------------------CCceeEEEEcCCCCEEEEecCCC-cEEEEEcc---CCc--------EEEEEee
Q 024868          154 ---------------------------HKSVLDMDFSLDSEFLATTSTDG-SARIWKTE---DGV--------AWTFLTR  194 (261)
Q Consensus       154 ---------------------------~~~v~~~~~s~~~~~l~~~~~d~-~i~iwd~~---~~~--------~~~~~~~  194 (261)
                                                 ...+..++|+|||+.|+.+..++ .+..++..   .+.        .+.. ..
T Consensus       167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g  245 (343)
T 2qe8_A          167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER-YS  245 (343)
T ss_dssp             TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE-EE
T ss_pred             ccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe-cc
Confidence                                       01357899999999888876655 45555432   111        0111 12


Q ss_pred             cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeecc-CcCeeEEEEeeCCCEEe
Q 024868          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLA  260 (261)
Q Consensus       195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~dg~~la  260 (261)
                      +.. ....++++++|..     .++...++.|.+||..+++........ ...+.+++|.++|++++
T Consensus       246 ~~g-~pdgia~d~~G~l-----~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v  306 (343)
T 2qe8_A          246 EKP-ICDGISIDKDHNI-----YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYF  306 (343)
T ss_dssp             ECC-SCSCEEECTTCCE-----EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEE
T ss_pred             cCC-CCceEEECCCCCE-----EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEE
Confidence            222 3567899999976     466667789999998566643222221 34678999999988665

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.46  E-value=1.6e-12  Score=110.46  Aligned_cols=183  Identities=11%  Similarity=0.083  Sum_probs=119.2

Q ss_pred             CCCCceEEEECCCCCeEEEEec-----CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC--
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTT-----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--  134 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--  134 (261)
                      |...+..++|||||++|+.+..     ...|++||+.+++........        .....++|+ |++.|+.+..+.  
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--------~k~~~~~Ws-Dg~~l~y~~~~~~~  197 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--------VKFSGISWL-GNEGFFYSSYDKPD  197 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--------EESCCCEEE-TTTEEEEEESSCCC
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--------ceeccEEEe-CCCEEEEEEecCcc
Confidence            5557889999999999985432     257999999988742211100        012457899 999998887663  


Q ss_pred             -----------eEEEEEccCce----EEeeccc-cCCceeEEEEcCCCCEEEEecC----CCcEEEEEccCCc-EEEEEe
Q 024868          135 -----------HLRIMHWPSLR----IILDEPK-AHKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGV-AWTFLT  193 (261)
Q Consensus       135 -----------~i~~~d~~~~~----~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~~  193 (261)
                                 .|++|++.+..    .+..... +.....++.|+|||++|+....    ++.|+++|+.+++ ....+.
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~  277 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ  277 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred             cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence                       39999987654    2222222 2335778999999998865332    3589999998763 344555


Q ss_pred             ecCCCceEEEEEecCCCcceEEEEEee--CCCcEEEEEECCCCeE--EeeeeccCcCeeEEEEeeCCCEEe
Q 024868          194 RNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~--~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .+... .... |+++|..+++   .+.  ...+.|..+|+.+++.  ...+..+...+.  .|++++++|+
T Consensus       278 ~~~~~-~~~~-~~~~g~~l~~---~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv  341 (693)
T 3iuj_A          278 GDLDA-DVSL-VDNKGSTLYL---LTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLF  341 (693)
T ss_dssp             CSSSS-CEEE-EEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEE
T ss_pred             CCCCc-eEEE-EeccCCEEEE---EECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEE
Confidence            44442 4444 7788887432   222  2247899999987653  223444544444  8999999876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.45  E-value=2e-11  Score=95.33  Aligned_cols=223  Identities=12%  Similarity=0.005  Sum_probs=133.5

Q ss_pred             EeeCCcceEEEEecC----CCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe------
Q 024868           13 IKRPENVNLVVLGKS----SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST------   82 (261)
Q Consensus        13 ~~~~~~~~~~~~g~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------   82 (261)
                      .|.|+...+.++...    ++        .++.+|..+.+.      ...++....+ . ++++|||+++++++      
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~--------~V~ViD~~t~~v------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~  102 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVT--------QQFVIDGEAGRV------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRI  102 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSE--------EEEEEETTTTEE------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEET
T ss_pred             ccCCCCCEEEEEcCcccCCCC--------EEEEEECCCCeE------EEEEECCCCC-c-EEECCCCCEEEEEccccccc
Confidence            344544555555433    34        899999988775      2233322233 4 99999999988775      


Q ss_pred             ----cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEccCceEEeeccccCCc
Q 024868           83 ----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKS  156 (261)
Q Consensus        83 ----~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~  156 (261)
                          .++.|.+||..+.+....+....-...........+.|+|||++++++..  ++.|.++|+.+++.+..+....  
T Consensus       103 ~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--  180 (386)
T 3sjl_D          103 ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--  180 (386)
T ss_dssp             TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--
T ss_pred             ccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--
Confidence                35679999998876533221100000001124567999999999888863  6899999999998876654322  


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEEccC-CcEEEEEeecC---CCce-EEEEEe-cCCCcceEEEEEeeCCCcEEEEEE
Q 024868          157 VLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNS---DEKI-ELCRFS-KDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~---~~~v-~~~~~~-p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      . ...+....+.+++.+.||.+.+.++.+ ++.........   ..++ ....|. ++|++     ++ .+.+|++++.|
T Consensus       181 ~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~-----~~-vs~~g~V~v~d  253 (386)
T 3sjl_D          181 C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL-----VW-PTYTGKIHQID  253 (386)
T ss_dssp             E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE-----EE-EBTTSEEEEEE
T ss_pred             c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE-----EE-EeCCCEEEEEE
Confidence            1 222333455666777788888888875 55432221111   1122 124565 67765     22 34478999999


Q ss_pred             CCCCe--EEeeeec----------cCcCeeEEEEeeCCCEEe
Q 024868          231 ISTWN--KIGHKRL----------LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       231 ~~~~~--~~~~~~~----------~~~~v~~~~~s~dg~~la  260 (261)
                      +.+..  .+.....          .......++++|+++.|.
T Consensus       254 ~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ly  295 (386)
T 3sjl_D          254 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY  295 (386)
T ss_dssp             CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             CCCCcceeecceeccccccccccccCCCcceeeECCCCCeEE
Confidence            97654  2222220          112344577888887664

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.44  E-value=7.9e-11  Score=92.82  Aligned_cols=240  Identities=9%  Similarity=0.052  Sum_probs=140.8

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEE-----------C--CCCCeEEEE-ecCC
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-----------N--PSGDDFVCS-TTNG   85 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------~--~~~~~l~~~-~~dg   85 (261)
                      .++.+...++....+..+.+...|++...... -.....++.-.+....+.|           +  +++++|++. ..++
T Consensus        28 ~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~-vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~  106 (462)
T 2ece_A           28 AYVACLYTGTGINRADFIAVVDVNPKSETYSK-IVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSS  106 (462)
T ss_dssp             EEEEEECTTTTCCCCCEEEEEECCTTSTTTTS-EEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTC
T ss_pred             EEEEeeccCCCCCCCCeEEEEECCCCCCCcce-EEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCC
Confidence            34444443332234555555556654443211 1222333332334444445           6  788887654 4568


Q ss_pred             cEEEEEEeCCccccceeeeeC-CCC---CCCCCeEEEEEeeCCcEEEEeccC------CeEEEEEccCceEEeeccccCC
Q 024868           86 GCKLFEVYGGATDINLLAKKM-PPL---QDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAHK  155 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~-~~~---~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~  155 (261)
                      +|+++|+.+.....++..... ..+   ........+..+|+| .++++..+      +.+.++|.++.+.+........
T Consensus       107 ~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~  185 (462)
T 2ece_A          107 RIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG  185 (462)
T ss_dssp             CEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT
T ss_pred             eEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC
Confidence            899999975532122111100 000   011234567888999 66665444      7899999999988776653322


Q ss_pred             ---ceeEEEEcCCCCEEEEec-------------------CCCcEEEEEccCCcEEEEEeec-CCCceEEEEE--ecCCC
Q 024868          156 ---SVLDMDFSLDSEFLATTS-------------------TDGSARIWKTEDGVAWTFLTRN-SDEKIELCRF--SKDGT  210 (261)
Q Consensus       156 ---~v~~~~~s~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~--~p~~~  210 (261)
                         --+.+.|+|+++.+++..                   .+.+|.+||+.+++.+.++... .+.....+.|  +|+++
T Consensus       186 ~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~  265 (462)
T 2ece_A          186 DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKL  265 (462)
T ss_dssp             TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCC
T ss_pred             CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCC
Confidence               245688999999888874                   3689999999999888888753 2223556656  99999


Q ss_pred             cceEEEEEe-eCCCcEEEEEECCCCeE--Eeee--ecc----------------CcCeeEEEEeeCCCEEeC
Q 024868          211 KPFLFCTVQ-RGDKALLAVYDISTWNK--IGHK--RLL----------------RKPASVLSISLDGKYLAM  261 (261)
Q Consensus       211 ~~~~~~~~~-~~~d~~i~~~d~~~~~~--~~~~--~~~----------------~~~v~~~~~s~dg~~la~  261 (261)
                      +.|+.+.++ ...+++|.+|....++.  +..+  ...                ......+.+||||++|.+
T Consensus       266 ~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYV  337 (462)
T 2ece_A          266 MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYL  337 (462)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEE
T ss_pred             EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEE
Confidence            855432211 11456787766654432  1111  000                245688999999999863

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=1e-10  Score=89.19  Aligned_cols=185  Identities=13%  Similarity=0.152  Sum_probs=120.6

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-C-CCCCceEEEECCCCCeEEEEe
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-E-SEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..+.++++.++   ..+++..  +.        .|+.||++++.+..    ..... . ....+..++++|+|+++++..
T Consensus        54 ~~~~~i~~~~d---G~l~v~~--~~--------~l~~~d~~~g~~~~----~~~~~~~~~~~~~~di~~d~dG~l~~~~~  116 (297)
T 3g4e_A           54 APVSSVALRQS---GGYVATI--GT--------KFCALNWKEQSAVV----LATVDNDKKNNRFNDGKVDPAGRYFAGTM  116 (297)
T ss_dssp             SCEEEEEEBTT---SSEEEEE--TT--------EEEEEETTTTEEEE----EEECCTTCSSEEEEEEEECTTSCEEEEEE
T ss_pred             CceEEEEECCC---CCEEEEE--CC--------eEEEEECCCCcEEE----EEecCCCCCCCCCCCEEECCCCCEEEecC
Confidence            45777888764   3354443  34        68889987766411    11111 1 123578899999999666543


Q ss_pred             c---------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEc--cCceE----
Q 024868           83 T---------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHW--PSLRI----  146 (261)
Q Consensus        83 ~---------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~--~~~~~----  146 (261)
                      .         ...-.+|.+..........       ......+.++|+||++.++. .+.++.|..|++  .++..    
T Consensus       117 ~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~  189 (297)
T 3g4e_A          117 AEETAPAVLERHQGALYSLFPDHHVKKYF-------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR  189 (297)
T ss_dssp             ECCSBTTBCCTTCEEEEEECTTSCEEEEE-------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE
T ss_pred             CcccccccccCCCcEEEEEECCCCEEEEe-------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE
Confidence            2         2335677765432211111       11234578999999987654 456788999987  34432    


Q ss_pred             -EeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEe-cCCCcceE
Q 024868          147 -ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS-KDGTKPFL  214 (261)
Q Consensus       147 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~~~  214 (261)
                       ...+.........++++++|++.++...++.|..||..+++.+..+..+.. .+++++|. |+++.+|+
T Consensus       190 ~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          190 SVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             EEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEE
T ss_pred             EEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEE
Confidence             112222335678999999998888877788899999999999888876544 58999999 89887553

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=1.5e-11  Score=97.94  Aligned_cols=182  Identities=8%  Similarity=-0.039  Sum_probs=119.2

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC--eEEEEEc
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHW  141 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~~~d~  141 (261)
                      ..+..++|+++++.+++...++.|++||..++..... ..       ...... ++|+|+++.|+++..++  .|.+++.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~-~~-------~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~  201 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV-HP-------GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK  201 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE-EE-------TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe-ec-------cCCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence            3578999999998777766678999999987653111 10       112233 89999999888887655  7888887


Q ss_pred             cCceEEeec---cc-cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEE----EeecCCCceE-EEEEecCCCcc
Q 024868          142 PSLRIILDE---PK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF----LTRNSDEKIE-LCRFSKDGTKP  212 (261)
Q Consensus       142 ~~~~~~~~~---~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v~-~~~~~p~~~~~  212 (261)
                      ..+......   .. ....+.+++++|++..|+.+..++.|+.||..++.....    .......... .++|+|++..+
T Consensus       202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            655432222   12 334678899999555555566788999999987764322    1111111113 89999965553


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeeeeccC---------------cCeeEEEEeeCCCEEe
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------------KPASVLSISLDGKYLA  260 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------------~~v~~~~~s~dg~~la  260 (261)
                          .++...++.|+.||.... . ..+....               .....++++|+|++++
T Consensus       282 ----yv~d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv  338 (409)
T 3hrp_A          282 ----YMSDQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI  338 (409)
T ss_dssp             ----EEEETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE
T ss_pred             ----EEEeCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE
Confidence                355667789999997643 2 2222221               3468899999998654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.43  E-value=2.2e-13  Score=107.09  Aligned_cols=204  Identities=12%  Similarity=0.092  Sum_probs=109.0

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~   98 (261)
                      ...+++++.++        .++.||..+++.      ...+..  +.+.+..+..++..+++++.|+.|+.||..+++..
T Consensus         9 ~~~v~~gs~dg--------~v~a~d~~tG~~------~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~   72 (369)
T 2hz6_A            9 ETLLFVSTLDG--------SLHAVSKRTGSI------KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL   72 (369)
T ss_dssp             TTEEEEEETTS--------EEEEEETTTCCE------EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred             CCEEEEEcCCC--------EEEEEECCCCCE------EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence            45777888888        999999988775      222332  34545555567777888789999999999877642


Q ss_pred             cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcE
Q 024868           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA  178 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  178 (261)
                      ...... ........++    +. ++..+++++.++.++.||.++++.+.....+.    ...++|++..+++++.|+.|
T Consensus        73 w~~~~~-~~~~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v  142 (369)
T 2hz6_A           73 TKLPFT-IPELVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTI  142 (369)
T ss_dssp             EECSCC-HHHHHTTCSC----C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEE
T ss_pred             eeeecc-CccccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEE
Confidence            221100 0000001111    11 24467777789999999999998876654432    23456788889999999999


Q ss_pred             EEEEccCCcEEEEEeecCCCceEEEEEecCC---CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe-eEEEEee
Q 024868          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDG---TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISL  254 (261)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~s~  254 (261)
                      +.||.++|+.+..+....   .....++++.   ..     ++.++.+|.++.||.++|+.+..... ..++ ....+++
T Consensus       143 ~a~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~-----v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~  213 (369)
T 2hz6_A          143 TMYDTKTRELRWNATYFD---YAASLPEDDVDYKMS-----HFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQR  213 (369)
T ss_dssp             ECCCSSSSSCCCEEEEEE---ECCBCCCCCTTCCCC-----EEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTT
T ss_pred             EEEECCCCCEEEeEeccc---ccCccccCCccccce-----EEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecC
Confidence            999999998776654321   1223344432   33     35567789999999999998765553 3343 3455666


Q ss_pred             CCC
Q 024868          255 DGK  257 (261)
Q Consensus       255 dg~  257 (261)
                      ||.
T Consensus       214 dg~  216 (369)
T 2hz6_A          214 EGL  216 (369)
T ss_dssp             SSC
T ss_pred             Cce
Confidence            764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.40  E-value=2.8e-10  Score=87.92  Aligned_cols=177  Identities=12%  Similarity=0.001  Sum_probs=112.9

Q ss_pred             CceEEEECCCCCeE-EEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868           65 DPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        65 ~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~  143 (261)
                      ...++.|+|++..+ ++...++.|..||..++...  .       +.....+.++.|+|+|+++++. .+ .|.+||..+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~-------~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~  118 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT--V-------HALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT  118 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--E-------EECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--E-------EECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence            45688999975544 55556788999998765421  1       1113578999999999877765 33 499999877


Q ss_pred             ceEEeeccc---c-CCceeEEEEcCCCCEEEEecC------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868          144 LRIILDEPK---A-HKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (261)
Q Consensus       144 ~~~~~~~~~---~-~~~v~~~~~s~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  213 (261)
                      ++.......   . ...+..+.++|+|+++++...      .+.|..++  +++... +..... ....++|+|+|+.+|
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~-~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADIS-IPNSICFSPDGTTGY  194 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEES-SEEEEEECTTSCEEE
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCc-ccCCeEEcCCCCEEE
Confidence            765322111   1 125889999999997765432      24455555  555433 322222 377899999998732


Q ss_pred             EEEEEeeCCCcEEEEEECC--CC-eE-----EeeeeccCcCeeEEEEeeCCCEEe
Q 024868          214 LFCTVQRGDKALLAVYDIS--TW-NK-----IGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       214 ~~~~~~~~~d~~i~~~d~~--~~-~~-----~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                          ++...++.|.+||+.  ++ +.     ...+......+..++++++|++.+
T Consensus       195 ----v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv  245 (326)
T 2ghs_A          195 ----FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  245 (326)
T ss_dssp             ----EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             ----EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE
Confidence                445567899999986  55 31     111111234567788888887553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.39  E-value=5.6e-09  Score=78.24  Aligned_cols=221  Identities=9%  Similarity=-0.037  Sum_probs=136.3

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCC
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNG   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg   85 (261)
                      +..++|.++  ...+.++....+        .|+.++.++...      .............+++++++..|+.+. ..+
T Consensus        38 ~~gi~~d~~--~~~ly~~d~~~~--------~I~~~~~~g~~~------~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~  101 (267)
T 1npe_A           38 IIGLAFDCV--DKVVYWTDISEP--------SIGRASLHGGEP------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLD  101 (267)
T ss_dssp             EEEEEEETT--TTEEEEEETTTT--------EEEEEESSSCCC------EEEECTTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEEecC--CCEEEEEECCCC--------EEEEEecCCCCc------EEEEECCCCCccEEEEEecCCeEEEEECCCC
Confidence            356677653  355666665566        888888876542      222222235688999999766665554 457


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .|.+++.+.... .....      ........++++|++..|+.+..   .+.|..+++..................+++
T Consensus       102 ~I~~~~~~g~~~-~~~~~------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~  174 (267)
T 1npe_A          102 RIEVAKMDGTQR-RVLFD------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (267)
T ss_dssp             EEEEEETTSCSC-EEEEC------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EEEEEEcCCCCE-EEEEE------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEE
Confidence            898888865432 11110      11245689999997655555543   367888887533221111122235789999


Q ss_pred             cCCCCEEEE-ecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          163 SLDSEFLAT-TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       163 s~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      +|++..|+. -...+.|.++|........... ... ....++..  +..+    .++....+.|..+|..+++.+..+.
T Consensus       175 d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~-~P~gi~~d--~~~l----yva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          175 DAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQ-YPFAVTSY--GKNL----YYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCC-SEEEEEEE--TTEE----EEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCC-CceEEEEe--CCEE----EEEECCCCeEEEEeCCCCCceEEEc
Confidence            998766654 4456889999987544333333 222 35666653  4543    2455566899999999998877665


Q ss_pred             ccC-cCeeEEEEeeCCCE
Q 024868          242 LLR-KPASVLSISLDGKY  258 (261)
Q Consensus       242 ~~~-~~v~~~~~s~dg~~  258 (261)
                      ... .....+++.|++.-
T Consensus       247 ~g~~~~p~gi~~~~~~~~  264 (267)
T 1npe_A          247 PHKQTRLYGITIALSQCP  264 (267)
T ss_dssp             CSSCCCCCCEEEECSCC-
T ss_pred             cccccccceeeecCccCC
Confidence            443 24788999998753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.38  E-value=9.2e-12  Score=101.31  Aligned_cols=214  Identities=7%  Similarity=0.015  Sum_probs=137.6

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEE-C-CCCCeEEEEe--------------
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-N-PSGDDFVCST--------------   82 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~--------------   82 (261)
                      ..+.+....+.        +|..+|..+.+..    ....++. ...+..+++ + |+++++++++              
T Consensus       102 ~~lfVnd~~~~--------rVavIdl~t~~~~----~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~  168 (595)
T 1fwx_A          102 RFLFMNDKANT--------RVARVRCDVMKCD----AILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  168 (595)
T ss_dssp             EEEEEEETTTT--------EEEEEETTTTEEE----EEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             CEEEEEcCCCC--------EEEEEECCCceEe----eEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence            44555555555        8999999887751    1112322 245788888 5 9999998874              


Q ss_pred             ----cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC------------------------
Q 024868           83 ----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG------------------------  134 (261)
Q Consensus        83 ----~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~------------------------  134 (261)
                          .++.+.+.|..+.+...+...        .+....++++|||+++++.+.+.                        
T Consensus       169 ~~~~~~~~vtvID~~t~~v~~qI~V--------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~  240 (595)
T 1fwx_A          169 DVANYVNVFTAVDADKWEVAWQVLV--------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  240 (595)
T ss_dssp             CGGGEEEEEEEEETTTTEEEEEEEE--------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             cccccCceEEEEECCCCeEEEEEEe--------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence                235688888877654222211        11234578999999988876432                        


Q ss_pred             --------------eEEEEEccC--ceE-EeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCc---------
Q 024868          135 --------------HLRIMHWPS--LRI-ILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGV---------  187 (261)
Q Consensus       135 --------------~i~~~d~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~---------  187 (261)
                                    .|.+.|.++  ++. +..+. -.....++.++|||+++++++ .+.+|.++|+.+.+         
T Consensus       241 ~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~  319 (595)
T 1fwx_A          241 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP  319 (595)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred             eeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence                          356666665  322 22222 223467899999999887665 57899999998653         


Q ss_pred             ---EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC----------CeEEeeeeccCcCe-----eE
Q 024868          188 ---AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST----------WNKIGHKRLLRKPA-----SV  249 (261)
Q Consensus       188 ---~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~----------~~~~~~~~~~~~~v-----~~  249 (261)
                         ......  .+...+.++|+|+| +.|    .+..-|++|.+||+.+          .+.+..+..+-.+-     ..
T Consensus       320 ~~~v~~~v~--vG~gP~h~aF~~dG-~aY----~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g  392 (595)
T 1fwx_A          320 RSAVVAEPE--LGLGPLHTAFDGRG-NAY----TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMG  392 (595)
T ss_dssp             GGGEEECCB--CCSCEEEEEECTTS-EEE----EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTT
T ss_pred             ccceEEEcC--CCCCcceEEECCCC-eEE----EEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccc
Confidence               333333  33358899999999 533    5567788999999976          44555555443221     23


Q ss_pred             EEEeeCCCEEeC
Q 024868          250 LSISLDGKYLAM  261 (261)
Q Consensus       250 ~~~s~dg~~la~  261 (261)
                      +.++|||++|++
T Consensus       393 ~t~~~DGk~l~~  404 (595)
T 1fwx_A          393 ETLDATNDWLVC  404 (595)
T ss_dssp             TSTTCCSSEEEE
T ss_pred             eEeCCCCCEEEE
Confidence            467899999864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.38  E-value=1.2e-10  Score=86.35  Aligned_cols=179  Identities=8%  Similarity=-0.013  Sum_probs=121.3

Q ss_pred             ceEEEECCCCCeEEEEec--CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEcc
Q 024868           66 PMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWP  142 (261)
Q Consensus        66 v~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~~  142 (261)
                      ...++|++++..+++.+.  ++.|.++|..+++......      +........+++.  ++.|+. .-.++.+.++|..
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~------l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK------MDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE------CCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe------cCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence            579999998754444433  5789999999887533221      1111122344444  545544 4478899999999


Q ss_pred             CceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-C---ceEEEEEecCCCcceEEEEE
Q 024868          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-E---KIELCRFSKDGTKPFLFCTV  218 (261)
Q Consensus       143 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~---~v~~~~~~p~~~~~~~~~~~  218 (261)
                      +.+.+..+.....  ....+++||+.++.+..++.|.++|..+.+.+..+..... .   .++.+.|. +|+.     .+
T Consensus        95 t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l-----yv  166 (266)
T 2iwa_A           95 TLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV-----WA  166 (266)
T ss_dssp             TTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EE
T ss_pred             CCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE-----EE
Confidence            9888766543311  2234667888777777788999999999998888764321 1   26688888 6643     25


Q ss_pred             eeCCCcEEEEEECCCCeEEeeeeccC-------------cCeeEEEEeeCCCEEe
Q 024868          219 QRGDKALLAVYDISTWNKIGHKRLLR-------------KPASVLSISLDGKYLA  260 (261)
Q Consensus       219 ~~~~d~~i~~~d~~~~~~~~~~~~~~-------------~~v~~~~~s~dg~~la  260 (261)
                      ....++.|.+.|..+++.+..+....             .....++|+|+++.|.
T Consensus       167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf  221 (266)
T 2iwa_A          167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF  221 (266)
T ss_dssp             EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred             ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence            55567899999999999887776421             2458999999987664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.33  E-value=2.4e-10  Score=87.42  Aligned_cols=185  Identities=9%  Similarity=-0.055  Sum_probs=117.0

Q ss_pred             ecCCCCCceEEEECCCCC-eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEE
Q 024868           59 FDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (261)
Q Consensus        59 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  137 (261)
                      +...........|+|+++ .+++...++.|..|+.. +..  ...      ......+..++++++|+++++...++.|.
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~--~~~------~~~~~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV--DVL------LDATAFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE--EEE------EESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE--EEE------eCCCCccceeeECCCCCEEEEECCCCEEE
Confidence            334455678899999998 45566667889999873 321  111      11235688999999999777766667899


Q ss_pred             EEEccCceEEeecccc----CCceeEEEEcCCCCEEEE----ecC-------------CCcEEEEEccCCcEEEEEeecC
Q 024868          138 IMHWPSLRIILDEPKA----HKSVLDMDFSLDSEFLAT----TST-------------DGSARIWKTEDGVAWTFLTRNS  196 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~  196 (261)
                      .|+.. ++........    ...+..++++|+|+++++    +..             .+.|..+|..+++.....  ..
T Consensus       111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~  187 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL  187 (305)
T ss_dssp             EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred             EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence            99975 4432211111    124678999999998886    332             246777787667654433  22


Q ss_pred             CCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEEECCCCeEE--eee-eccCcCeeEEEEeeCCCEEe
Q 024868          197 DEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNKI--GHK-RLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       197 ~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~d~~~~~~~--~~~-~~~~~~v~~~~~s~dg~~la  260 (261)
                      . ....++|+||++.+|    ++...     ++.|++||+..+...  ..+ .........++++++|++.+
T Consensus       188 ~-~p~gl~~spdg~~ly----v~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv  254 (305)
T 3dr2_A          188 D-HPNGLAFSPDEQTLY----VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS  254 (305)
T ss_dssp             S-SEEEEEECTTSSEEE----EEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred             C-CCcceEEcCCCCEEE----EEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence            3 478899999999743    22222     368999998765411  111 11223455688888887543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.32  E-value=9.4e-11  Score=91.49  Aligned_cols=200  Identities=9%  Similarity=0.005  Sum_probs=121.6

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCC-----CCCceEEEECCCCCeEEEEec--CCcEEE--EEEeCCccccce------e
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDES-----EGDPMTIAVNPSGDDFVCSTT--NGGCKL--FEVYGGATDINL------L  102 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~i--~~~~~~~~~~~~------~  102 (261)
                      .|..+|+.+.+.    .....+.+.     ......++++|||++++++..  +..+.+  +|..+ ......      .
T Consensus        97 ~VsviD~~T~~v----v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~  171 (368)
T 1mda_H           97 YVEVFDPVTFLP----IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIH  171 (368)
T ss_dssp             EEEEECTTTCCE----EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCE
T ss_pred             EEEEEECCCCCE----EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEc
Confidence            789999988775    122222211     134678999999999998875  356888  77754 100000      0


Q ss_pred             eee-----------------CC---------------CC-CCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce--EE
Q 024868          103 AKK-----------------MP---------------PL-QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--II  147 (261)
Q Consensus       103 ~~~-----------------~~---------------~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~--~~  147 (261)
                      ...                 ..               .. ....+.   . ++++..++..+. +.+.+.|.....  .+
T Consensus       172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~  246 (368)
T 1mda_H          172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMK  246 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEE
T ss_pred             cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEE
Confidence            000                 00               00 001111   2 444454455545 778888875432  11


Q ss_pred             eeccc------cC----CceeEEEEcCCCCEEEEecC---------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecC
Q 024868          148 LDEPK------AH----KSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (261)
Q Consensus       148 ~~~~~------~~----~~v~~~~~s~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~  208 (261)
                      ..+..      ..    .....+.++||++.++.+..         ++.+.++|+.+++.+.++....  ....++|+||
T Consensus       247 ~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~D  324 (368)
T 1mda_H          247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQD  324 (368)
T ss_dssp             CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCS
T ss_pred             EEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCC
Confidence            11110      01    11223789999998876532         2356799999999998887554  4889999999


Q ss_pred             CCcceEEEEEeeC-CCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          209 GTKPFLFCTVQRG-DKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       209 ~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      |+++    +++.. .++.|.++|+.+++.+..+.... ....+++.+
T Consensus       325 g~~l----~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          325 GASD----NYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             SSCE----EEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred             CCEE----EEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence            9974    24455 58899999999999987776443 445666654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.31  E-value=1.5e-09  Score=84.87  Aligned_cols=217  Identities=9%  Similarity=0.026  Sum_probs=133.3

Q ss_pred             EEEEEeeCCcceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcE
Q 024868            9 CGSWIKRPENVNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   87 (261)
                      .++++|+  +..+.++.. .++        .+..+|..+.+.      ...+.-. + . ...+....+.+++.+.||++
T Consensus       141 ~~a~spD--Gk~lyVan~~~~~--------~VsVID~~t~~v------v~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~  201 (386)
T 3sjl_D          141 MTSLTPD--GKTLLFYQFSPAP--------AVGVVDLEGKAF------KRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSL  201 (386)
T ss_dssp             GEEECTT--SSEEEEEECSSSC--------EEEEEETTTTEE------EEEEECC-S-E-EEEEEEETTEEEEEETTSCE
T ss_pred             eEEEcCC--CCEEEEEEcCCCC--------eEEEEECCCCcE------EEEEECC-C-c-ceeecCCCceeEEECCCCCE
Confidence            3566665  244444433 245        788899888775      2222211 1 1 12222234556666778888


Q ss_pred             EEEEEeC-CccccceeeeeCCCC-CCCCCeE-EEEEe-eCCcEEEEeccCCeEEEEEccCceE--Eeecc--c-------
Q 024868           88 KLFEVYG-GATDINLLAKKMPPL-QDAGPQK-CLSFS-VDGSRFAAGGVDGHLRIMHWPSLRI--ILDEP--K-------  152 (261)
Q Consensus        88 ~i~~~~~-~~~~~~~~~~~~~~~-~~~~~v~-~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~--~-------  152 (261)
                      .+.++.. ++. ....   ...+ ....++. ...|. ++|++++.. .+|++++.|+.+...  .....  .       
T Consensus       202 ~~v~~~~~g~v-~~~~---~~~~~~~~~~~~~~~~~~~~dG~~~~vs-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g  276 (386)
T 3sjl_D          202 AKVAFGTEGTP-EITH---TEVFHPEDEFLINHPAYSQKAGRLVWPT-YTGKIHQIDLSSGDAKFLPAVEALTEAERADG  276 (386)
T ss_dssp             EEEECCSSSCC-EEEE---CCCCSCTTSCBCSCCEEETTTTEEEEEB-TTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred             EEEECCCCCeE-EEee---cceeccccccccccceeEcCCCcEEEEe-CCCEEEEEECCCCcceeecceecccccccccc
Confidence            8888765 332 1100   0111 1112222 24665 678665544 689999999875542  11110  0       


Q ss_pred             -cCCceeEEEEcCCCCEEEEecC----------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868          153 -AHKSVLDMDFSLDSEFLATTST----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       153 -~~~~v~~~~~s~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                       ..+....++++|+++.++....          .+.|.++|+.+++.+.++....  .+++++++||++..+   ..+..
T Consensus       277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~l---y~tn~  351 (386)
T 3sjl_D          277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLL---YALST  351 (386)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEE---EEEET
T ss_pred             ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEE---EEEcC
Confidence             0123455778999988877642          2579999999999999987653  488999999997311   24456


Q ss_pred             CCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       222 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d  255 (261)
                      .++.|.++|..+++.+..+... ....+|.+++|
T Consensus       352 ~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          352 GDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             TTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             CCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            7899999999999998777654 44467888887

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.31  E-value=1.4e-09  Score=92.26  Aligned_cols=185  Identities=12%  Similarity=0.112  Sum_probs=123.5

Q ss_pred             EEEECCCCCeEEEEecCCc-------------------EEEEEEeCCccccceeeeeCC--CCCCCCCeEEEEEeeCCc-
Q 024868           68 TIAVNPSGDDFVCSTTNGG-------------------CKLFEVYGGATDINLLAKKMP--PLQDAGPQKCLSFSVDGS-  125 (261)
Q Consensus        68 ~~~~~~~~~~l~~~~~dg~-------------------i~i~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~-  125 (261)
                      .++++|++..++.+..++.                   |..+|..+++...........  ......+........+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5788898888888877653                   899999988764433211000  011112232233344675 


Q ss_pred             --EEEEeccCCeEEEEEccCceEEeeccccC-------------------------------------C--ceeEEEEcC
Q 024868          126 --RFAAGGVDGHLRIMHWPSLRIILDEPKAH-------------------------------------K--SVLDMDFSL  164 (261)
Q Consensus       126 --~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-------------------------------------~--~v~~~~~s~  164 (261)
                        .++.++.+|.++++|..+++.+.......                                     +  .-..++++|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              78888999999999999998763221100                                     0  012378888


Q ss_pred             CCCEEEEecC---------------------------------------------CCcEEEEEccCCcEEEEEeecCCCc
Q 024868          165 DSEFLATTST---------------------------------------------DGSARIWKTEDGVAWTFLTRNSDEK  199 (261)
Q Consensus       165 ~~~~l~~~~~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~  199 (261)
                      +..++++...                                             +|.|+.||+.+|+.+.+...+..  
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~--  476 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI--  476 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS--
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC--
Confidence            8877776421                                             37799999999999888775432  


Q ss_pred             eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCc-CeeEEEEeeCCCEE
Q 024868          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYL  259 (261)
Q Consensus       200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~dg~~l  259 (261)
                      .....+...+..     ++.++.|+.++.||.++|+.+..+..... ...-+.|+.||+..
T Consensus       477 ~~~g~~~taggl-----vf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          477 FNGGTLSTAGNL-----VFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             CCCCEEEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccCccceECCCE-----EEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            344456777776     56778999999999999999877765432 23457788898744

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.30  E-value=1.4e-09  Score=92.05  Aligned_cols=186  Identities=12%  Similarity=0.104  Sum_probs=124.8

Q ss_pred             eEEEECCCCCeEEEEecCC-------------------cEEEEEEeCCccccceeeeeCCC--CCCCCCeEEEEEeeCC-
Q 024868           67 MTIAVNPSGDDFVCSTTNG-------------------GCKLFEVYGGATDINLLAKKMPP--LQDAGPQKCLSFSVDG-  124 (261)
Q Consensus        67 ~~~~~~~~~~~l~~~~~dg-------------------~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~-  124 (261)
                      ..++++|++..++.+..++                   .|..+|..+++............  ........-+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            3578889888888776553                   48888888887543322110000  0011222334445578 


Q ss_pred             --cEEEEeccCCeEEEEEccCceEEeeccccC----------C-ce------------------------eEEEEcCCCC
Q 024868          125 --SRFAAGGVDGHLRIMHWPSLRIILDEPKAH----------K-SV------------------------LDMDFSLDSE  167 (261)
Q Consensus       125 --~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~-~v------------------------~~~~~s~~~~  167 (261)
                        +.++.++.+|.++++|..+++.+.......          + ++                        ..++++|++.
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              678899999999999999998865443111          0 01                        2578899888


Q ss_pred             EEEEecC-------------------------------------------CCcEEEEEccCCcEEEEEeecCCCceEEEE
Q 024868          168 FLATTST-------------------------------------------DGSARIWKTEDGVAWTFLTRNSDEKIELCR  204 (261)
Q Consensus       168 ~l~~~~~-------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  204 (261)
                      ++++...                                           .+.|..||+.+++.+.+.....  ++....
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~g~  483 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGGT  483 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCCE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC--CCcCcc
Confidence            8776432                                           2779999999999988876432  355556


Q ss_pred             EecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC-cCeeEEEEeeCCCEE
Q 024868          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYL  259 (261)
Q Consensus       205 ~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l  259 (261)
                      +..++..     ++.++.|+.+++||.++++.+..+.... ....-+.+.++|+.+
T Consensus       484 ~~~~g~~-----v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          484 LTTAGNV-----VFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             EEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             eEeCCCE-----EEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence            7778876     4667889999999999999987776443 233456677888644

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.30  E-value=7.4e-10  Score=81.26  Aligned_cols=177  Identities=12%  Similarity=0.023  Sum_probs=120.2

Q ss_pred             ceEEEECCCCCeEEEEecCC--cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEEcc
Q 024868           66 PMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWP  142 (261)
Q Consensus        66 v~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~  142 (261)
                      ...+.|+ ++..+.+.+.+|  .|+++|+.+++......      +  ..........+++..|... -.++.+.+||..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~------l--~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE------L--GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE------C--CTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe------c--CCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            3789998 666666666665  89999999887533221      1  2233333344445555544 368899999999


Q ss_pred             CceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-C---CceEEEEEecCCCcceEEEEE
Q 024868          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-D---EKIELCRFSKDGTKPFLFCTV  218 (261)
Q Consensus       143 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~---~~v~~~~~~p~~~~~~~~~~~  218 (261)
                      +.+.+..+....   ....+++|++.|+.+..++.|.++|..+.+.+.++.... +   ..++.+.|. +|+.     .+
T Consensus       116 t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l-----ya  186 (262)
T 3nol_A          116 NLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI-----FA  186 (262)
T ss_dssp             TCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE-----EE
T ss_pred             cCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE-----EE
Confidence            998876655432   223344677877777667889999999999888876532 1   124567786 6753     24


Q ss_pred             eeCCCcEEEEEECCCCeEEeeeecc------------CcCeeEEEEeeCCCEEe
Q 024868          219 QRGDKALLAVYDISTWNKIGHKRLL------------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       219 ~~~~d~~i~~~d~~~~~~~~~~~~~------------~~~v~~~~~s~dg~~la  260 (261)
                      ..-.++.|.+.|.++++.+..+...            ....+.++|+|+++.|.
T Consensus       187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf  240 (262)
T 3nol_A          187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF  240 (262)
T ss_dssp             EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred             EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence            5556779999999999988766542            12457899999887664

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.26  E-value=2.6e-10  Score=89.06  Aligned_cols=209  Identities=7%  Similarity=-0.083  Sum_probs=119.4

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe----------cCCcEEEEEEeCCccccceeeeeCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP  107 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~~  107 (261)
                      .+..+|..+.+.      ...+.-...+  .+.++||+++++++.          .++.|.+||..+.+....+......
T Consensus        47 ~vsvID~~t~~v------~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~  118 (368)
T 1mda_H           47 ENWVSCAGCGVT------LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP  118 (368)
T ss_dssp             EEEEEETTTTEE------EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred             eEEEEECCCCeE------EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc
Confidence            677889888775      2233322334  799999999998886          3678999999988763332211000


Q ss_pred             CCCCCCCeEEEEEeeCCcEEEEecc--CCeEEE--EEccCceEEeecccc-----CCceeEEEE----------------
Q 024868          108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRI--MHWPSLRIILDEPKA-----HKSVLDMDF----------------  162 (261)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~--~d~~~~~~~~~~~~~-----~~~v~~~~~----------------  162 (261)
                      ..........++++|||++++++..  +..+.+  +|..+-+.+ .....     .+.-.-+.+                
T Consensus       119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i-~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT-KSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE-ECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEE-ECCCceEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence            0000123456999999999998864  456888  887651111 11000     000000111                


Q ss_pred             ---------------------cCCCCEEEEecCCCcEEEEEccCCc--EEEEEeec------CC---CceEEEEEecCCC
Q 024868          163 ---------------------SLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRN------SD---EKIELCRFSKDGT  210 (261)
Q Consensus       163 ---------------------s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~------~~---~~v~~~~~~p~~~  210 (261)
                                           ++++..++..+. +.+.+.|+.+++  .+..+...      ..   .....++++||++
T Consensus       198 ~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~  276 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD  276 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred             cCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence                                 233333333334 667777765432  22222110      00   0112268999999


Q ss_pred             cceEEEEEee-C-C-----CcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          211 KPFLFCTVQR-G-D-----KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       211 ~~~~~~~~~~-~-~-----d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ++|+   ... . .     ++.+.++|+.+++.+..+.... ....++|+|||++++
T Consensus       277 ~lyV---~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~  329 (368)
T 1mda_H          277 GIMI---LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDN  329 (368)
T ss_dssp             EEEE---EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEE
T ss_pred             EEEE---EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEE
Confidence            8542   222 1 2     2345699999999887766443 678999999998543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.21  E-value=1.5e-08  Score=75.20  Aligned_cols=198  Identities=9%  Similarity=-0.010  Sum_probs=130.0

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecCC
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNG   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg   85 (261)
                      ...++|+++   ..+.++.+..+..      .|..+|+.+++.    .....+..+ .....+++.  ++.|..+ ..++
T Consensus        23 ~~Gl~~~~d---g~Lyvstg~~~~s------~v~~iD~~tg~v----~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           23 TQGLVYAEN---DTLFESTGLYGRS------SVRQVALQTGKV----ENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEECST---TEEEEEECSTTTC------EEEEEETTTCCE----EEEEECCTT-CCEEEEEEE--TTEEEEEETTCS
T ss_pred             cccEEEeCC---CeEEEECCCCCCC------EEEEEECCCCCE----EEEEecCCC-cceEEEEEe--CCEEEEEEecCC
Confidence            356777764   3455544432222      899999998875    112223322 122345554  5555544 4578


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-----CceeEE
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----KSVLDM  160 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~  160 (261)
                      .+.++|..+.+....+.   ..  ..    ....+++||+.++++..++.|.++|..+.+.+..+.-..     ..+..+
T Consensus        87 ~v~viD~~t~~v~~~i~---~g--~~----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel  157 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFT---HQ--MK----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL  157 (266)
T ss_dssp             EEEEEETTTTEEEEEEE---CC--SS----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEEEEECCCCcEEEEEE---CC--CC----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence            99999998776532221   11  01    124467788888777778899999999887665554322     135678


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC------------CCceEEEEEecCCCcceEEEEEeeCCCcEEEE
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~  228 (261)
                      .|. +|+..+....++.|.+.|..+++.+..+....            ......++|+|+++.+    .+++...+.+.+
T Consensus       158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l----fVTgk~~~~v~~  232 (266)
T 2iwa_A          158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI----FVTGKLWPKLFE  232 (266)
T ss_dssp             EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE----EEEETTCSEEEE
T ss_pred             EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE----EEECCCCCeEEE
Confidence            888 77666666678899999999999998886421            1236899999999885    477888889999


Q ss_pred             EECCCC
Q 024868          229 YDISTW  234 (261)
Q Consensus       229 ~d~~~~  234 (261)
                      .++...
T Consensus       233 i~l~~~  238 (266)
T 2iwa_A          233 IKLHLV  238 (266)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            888653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.18  E-value=1.4e-09  Score=84.70  Aligned_cols=191  Identities=9%  Similarity=0.042  Sum_probs=115.0

Q ss_pred             ceeeEEEEEeeCCcceEEEEecC-----CCCCCCCCceEEEEEcCCCCceecCCeEEeeec----CCCCCceEEEECCCC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKS-----SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD----ESEGDPMTIAVNPSG   75 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~   75 (261)
                      ..+.++++.++   .++.++...     ..        +|+.||+.++++.    ....+.    .+...+..+++++++
T Consensus        67 ~~p~gv~~d~~---g~L~v~D~g~~~~~~~--------~i~~~d~~tg~~~----~~~~~~~~~~~~~~~~~~v~vd~~~  131 (343)
T 2qe8_A           67 DTVLGIKSDGN---GIVWMLDNGNQSKSVP--------KLVAWDTLNNQLS----RVIYLPPPITLSNSFVNDLAVDLIH  131 (343)
T ss_dssp             SCEEEEEECSS---SEEEEEECHHHHTSCC--------EEEEEETTTTEEE----EEEECCTTTSCTTCCCCEEEEETTT
T ss_pred             eEeeEEEEcCC---CcEEEEcCCCCcCCCC--------eEEEEECCCCeEE----EEEECChhhcccccccceEEEecCC
Confidence            45778888774   445554432     34        8899998876641    122222    123456899999865


Q ss_pred             CeE-EEEe---cCCcEEEEEEeCCccccceeeee--CC-----------CC---C-------CCCCeEEEEEeeCCcEEE
Q 024868           76 DDF-VCST---TNGGCKLFEVYGGATDINLLAKK--MP-----------PL---Q-------DAGPQKCLSFSVDGSRFA  128 (261)
Q Consensus        76 ~~l-~~~~---~dg~i~i~~~~~~~~~~~~~~~~--~~-----------~~---~-------~~~~v~~~~~s~~~~~l~  128 (261)
                      ..+ ++-.   .++.|.+||+.+++.... ....  ..           .+   .       ....+..++|+||++.|+
T Consensus       132 g~~yvtd~~~~~~~~i~v~d~~~g~~~r~-~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly  210 (343)
T 2qe8_A          132 NFVYISDPAPDDKAALIRVDLQTGLAARV-LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY  210 (343)
T ss_dssp             TEEEEEECCSGGGCEEEEEETTTCCEEEE-CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE
T ss_pred             CEEEEEcCccCCCCeEEEEECCCCCEEEE-ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEE
Confidence            555 4433   567899999876543111 1000  00           00   0       012468899999999888


Q ss_pred             EeccCC-eEEEEEccC---ce----EEe---eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC
Q 024868          129 AGGVDG-HLRIMHWPS---LR----IIL---DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD  197 (261)
Q Consensus       129 ~~~~d~-~i~~~d~~~---~~----~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  197 (261)
                      ++...+ .++.++...   +.    ...   ....+......++++++|+++++...++.|.+||..+++..........
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~  290 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKL  290 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGG
T ss_pred             EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCce
Confidence            876555 555555321   10    000   0111223467799999999999988899999999866764433332222


Q ss_pred             CceEEEEEecCCCc
Q 024868          198 EKIELCRFSKDGTK  211 (261)
Q Consensus       198 ~~v~~~~~~p~~~~  211 (261)
                      ..+.+++|.++++.
T Consensus       291 ~~p~~va~~~~g~l  304 (343)
T 2qe8_A          291 SWTDSFNFGSDGYL  304 (343)
T ss_dssp             SCEEEEEECTTSCE
T ss_pred             ecCCeeEECCCCcE
Confidence            35889999999875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.15  E-value=6.8e-08  Score=73.82  Aligned_cols=219  Identities=12%  Similarity=0.028  Sum_probs=126.3

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-   85 (261)
                      ...++|.++   .+++++....+        +|+.+|+.+...       ..+. ....+..+++.++|+.+++..... 
T Consensus        34 pegia~~~~---g~lyv~d~~~~--------~I~~~d~~g~~~-------~~~~-~~~~p~gia~~~dG~l~vad~~~~~   94 (306)
T 2p4o_A           34 LENLASAPD---GTIFVTNHEVG--------EIVSITPDGNQQ-------IHAT-VEGKVSGLAFTSNGDLVATGWNADS   94 (306)
T ss_dssp             EEEEEECTT---SCEEEEETTTT--------EEEEECTTCCEE-------EEEE-CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             cceEEECCC---CCEEEEeCCCC--------eEEEECCCCceE-------EEEe-CCCCceeEEEcCCCcEEEEeccCCc
Confidence            456777763   44666655566        899999876432       1111 234688999999998655543332 


Q ss_pred             -cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-Eeec---------cccC
Q 024868           86 -GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDE---------PKAH  154 (261)
Q Consensus        86 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~---------~~~~  154 (261)
                       .|..++..++... ... .    .........++..+++..+++-..++.|+.+|...++. +...         ....
T Consensus        95 ~~v~~~d~~~g~~~-~~~-~----~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~  168 (306)
T 2p4o_A           95 IPVVSLVKSDGTVE-TLL-T----LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  168 (306)
T ss_dssp             CEEEEEECTTSCEE-EEE-E----CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             ceEEEEcCCCCeEE-EEE-e----CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence             3555665554421 111 1    11122334555555555555554688899999765431 2100         0111


Q ss_pred             CceeEEEEcCCCCEEEE-ecCCCcEEEEEccC-CcE--EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868          155 KSVLDMDFSLDSEFLAT-TSTDGSARIWKTED-GVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       155 ~~v~~~~~s~~~~~l~~-~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      .....+  +|+++.|+. -...+.|..||+.. ++.  ...+.. .. ....++++++|+.     .++....+.|.++|
T Consensus       169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~-~P~gi~vd~dG~l-----~va~~~~~~V~~~~  239 (306)
T 2p4o_A          169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QT-NIDDFAFDVEGNL-----YGATHIYNSVVRIA  239 (306)
T ss_dssp             CSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SC-CCSSEEEBTTCCE-----EEECBTTCCEEEEC
T ss_pred             CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cC-CCCCeEECCCCCE-----EEEeCCCCeEEEEC
Confidence            234455  888876654 45578899999874 332  122221 12 3567899999975     34444567899999


Q ss_pred             CCCCeEEe--eeeccCcCeeEEEEe---eCCCEEe
Q 024868          231 ISTWNKIG--HKRLLRKPASVLSIS---LDGKYLA  260 (261)
Q Consensus       231 ~~~~~~~~--~~~~~~~~v~~~~~s---~dg~~la  260 (261)
                      .. ++...  ..........+++|.   ||++.|.
T Consensus       240 ~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~Ly  273 (306)
T 2p4o_A          240 PD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  273 (306)
T ss_dssp             TT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             CC-CCEEEEeecccccCCceEEEEecccCCCCEEE
Confidence            75 55432  222223567899999   8987664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.15  E-value=5.8e-09  Score=76.56  Aligned_cols=176  Identities=9%  Similarity=-0.031  Sum_probs=118.7

Q ss_pred             ceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEccCc
Q 024868           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSL  144 (261)
Q Consensus        66 v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~  144 (261)
                      ...+.|+ ++.++.+.+.+|.|+++|+.+++.....       +.  .........++++.|.. .-.++.+.+||..+.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-------l~--~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-------RL--GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-------EC--TTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-------CC--CCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence            3688887 3555567777889999999998763332       11  22333223444444444 447889999999999


Q ss_pred             eEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC----CceEEEEEecCCCcceEEEEEee
Q 024868          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                      +.+..+..... -..++  +|++.|+.+..++.|.++|..+.+.+.++.....    ..++.+.|. +|+.     .+..
T Consensus       127 ~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l-----yanv  197 (268)
T 3nok_A          127 QRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI-----YANI  197 (268)
T ss_dssp             EEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EEEE
T ss_pred             cEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE-----EEEE
Confidence            88766654322 23343  5678777777789999999999998888764321    135677776 6753     2445


Q ss_pred             CCCcEEEEEECCCCeEEeeeecc-------------CcCeeEEEEeeCCCEEe
Q 024868          221 GDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~~~~~~~~-------------~~~v~~~~~s~dg~~la  260 (261)
                      -.++.|.+.|.++++.+..+...             ..-.+.++++|+++.|.
T Consensus       198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf  250 (268)
T 3nok_A          198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF  250 (268)
T ss_dssp             TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred             CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence            55679999999999987666532             13568899999876553

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.15  E-value=1.8e-08  Score=73.26  Aligned_cols=178  Identities=7%  Similarity=-0.032  Sum_probs=116.8

Q ss_pred             CceEEEECCCCCeEEEEecC--CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEc
Q 024868           65 DPMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHW  141 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~  141 (261)
                      -...+.|++ +..+.+.+.+  ..|+.+|+.+++.....        .-..........+++..|.. .-.++.+.+||.
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~--------~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA--------EVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE--------ECCTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE--------eCCCCcceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence            356899986 4455555554  48999999988753222        11123333333444444444 447899999999


Q ss_pred             cCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC----CceEEEEEecCCCcceEEEE
Q 024868          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCT  217 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~~~~~~  217 (261)
                      .+.+.+..+..... -..+  +++++.|+.+..++.|.++|..+.+.+.++.....    ..++.+.|. +|+.     .
T Consensus        93 ~tl~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l-----y  163 (243)
T 3mbr_X           93 ATLTPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL-----L  163 (243)
T ss_dssp             TTTEEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----E
T ss_pred             CcCcEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE-----E
Confidence            99988766654332 2344  45677777666788999999999998888764321    135667765 6653     2


Q ss_pred             EeeCCCcEEEEEECCCCeEEeeeecc-------------CcCeeEEEEeeCCCEEe
Q 024868          218 VQRGDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLA  260 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~~~~~~~~~~-------------~~~v~~~~~s~dg~~la  260 (261)
                      +..-.+..|.+.|.++++.+..+...             ..-.+.++++|+++.|.
T Consensus       164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf  219 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF  219 (243)
T ss_dssp             EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred             EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence            44445668999999999987766522             12457899999877654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.13  E-value=1.6e-09  Score=88.34  Aligned_cols=171  Identities=10%  Similarity=0.064  Sum_probs=121.1

Q ss_pred             CCCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEE-e-eCCcEEEEec------------------c
Q 024868           74 SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-S-VDGSRFAAGG------------------V  132 (261)
Q Consensus        74 ~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~  132 (261)
                      ||+++..... ++.|.+.|+.+.+....+      .+........+++ + |+++++++++                  .
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii------~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAIL------EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEE------ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEE------eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            8888877665 467999999887752211      2333345778887 5 8999988884                  2


Q ss_pred             CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCC------------------------------------
Q 024868          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG------------------------------------  176 (261)
Q Consensus       133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~------------------------------------  176 (261)
                      ++.+.++|..+.+...++.-.. ....++++|+|+++++.+.+.                                    
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            4579999999988877665433 457788999999998877543                                    


Q ss_pred             --cEEEEEccC--CcE-EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe------------EEee
Q 024868          177 --SARIWKTED--GVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------KIGH  239 (261)
Q Consensus       177 --~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~------------~~~~  239 (261)
                        .|.+.|.++  ++. +..+....  ...++.++|||+++    ++++..+.+|.++|+.+.+            ....
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v----~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHL----CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEE----EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             ECcEEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEE----EEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence              367777776  444 45555433  36789999999984    4677788899999998653            2222


Q ss_pred             eeccCcCeeEEEEeeCCCEE
Q 024868          240 KRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       240 ~~~~~~~v~~~~~s~dg~~l  259 (261)
                      . ..+.....++|+||| ++
T Consensus       327 v-~vG~gP~h~aF~~dG-~a  344 (595)
T 1fwx_A          327 P-ELGLGPLHTAFDGRG-NA  344 (595)
T ss_dssp             C-BCCSCEEEEEECTTS-EE
T ss_pred             c-CCCCCcceEEECCCC-eE
Confidence            2 334567899999999 53

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.13  E-value=7.4e-09  Score=79.79  Aligned_cols=202  Identities=11%  Similarity=0.042  Sum_probs=128.5

Q ss_pred             EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc
Q 024868           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN  100 (261)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  100 (261)
                      .+.+|..++        .++.+|.. +..      ......+...+.++...+++. +..++.++.|..+|.. +.....
T Consensus       109 ~l~v~t~~~--------~l~~~d~~-g~~------~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~  171 (330)
T 3hxj_A          109 ILYVTSMDG--------HLYAINTD-GTE------KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR  171 (330)
T ss_dssp             EEEEECTTS--------EEEEECTT-SCE------EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred             EEEEEecCC--------EEEEEcCC-CCE------EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence            345555566        78888887 443      222233344566677777776 5556777889999887 443111


Q ss_pred             eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEE
Q 024868          101 LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI  180 (261)
Q Consensus       101 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i  180 (261)
                      ..       .....+.++...+++...+ ++  +.+..+| .+++...........+.++...++|.+ ..++.++.+..
T Consensus       172 ~~-------~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~  239 (330)
T 3hxj_A          172 FK-------TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYA  239 (330)
T ss_dssp             EE-------CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEE
T ss_pred             Ee-------cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEE
Confidence            11       1123455666767776544 43  7799999 777766665555556888888888764 44556778888


Q ss_pred             EEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       181 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +|. +++.+..+..... .+..+.+.+++..      ..++.++.|..+|. +++.+.........+.++...++|+..+
T Consensus       240 ~~~-~g~~~~~~~~~~~-~~~~~~~~~~g~l------~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~  310 (330)
T 3hxj_A          240 INP-DGTEKWRFKTGKR-IESSPVIGNTDTI------YFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF  310 (330)
T ss_dssp             ECT-TSCEEEEEECSSC-CCSCCEECTTSCE------EEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE
T ss_pred             ECC-CCCEeEEeeCCCC-ccccceEcCCCeE------EEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE
Confidence            874 5666666554332 2445566667763      66777888999996 6776655555556677777777877543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.09  E-value=1.8e-09  Score=85.68  Aligned_cols=133  Identities=11%  Similarity=0.007  Sum_probs=97.7

Q ss_pred             eCCcEEEEecc-C----CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec----------CCCcEEEEEccCC
Q 024868          122 VDGSRFAAGGV-D----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS----------TDGSARIWKTEDG  186 (261)
Q Consensus       122 ~~~~~l~~~~~-d----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~iwd~~~~  186 (261)
                      |+++.+++... +    +.|.++|..+++.+..+.....+  .+.++|||++++.+.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            46776666543 2    68999999999988777665555  899999999888775          3678999999999


Q ss_pred             cEEEEEeec-C-----CCceEEEEEecCCCcceEEEEEeeC-CCcEEEEEECCCCeEEeeeeccCc-------CeeEEEE
Q 024868          187 VAWTFLTRN-S-----DEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDISTWNKIGHKRLLRK-------PASVLSI  252 (261)
Q Consensus       187 ~~~~~~~~~-~-----~~~v~~~~~~p~~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~~~~~~~~~-------~v~~~~~  252 (261)
                      +.+.++... .     ......+.|+|||+++|    ++.. .++.|.+.|+.+++.+..+.....       .-.-+.+
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~ly----V~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLL----FYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEE----EEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEE----EEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEE
Confidence            998887643 0     12356789999999843    2232 367899999999998876664221       1223678


Q ss_pred             eeCCCEEe
Q 024868          253 SLDGKYLA  260 (261)
Q Consensus       253 s~dg~~la  260 (261)
                      ++||++++
T Consensus       236 ~~dG~~~~  243 (426)
T 3c75_H          236 CRDGSLAR  243 (426)
T ss_dssp             ETTSSEEE
T ss_pred             cCCCCEEE
Confidence            88888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.08  E-value=5.5e-07  Score=66.39  Aligned_cols=205  Identities=10%  Similarity=0.049  Sum_probs=127.8

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      ..+..++|.|+  ...+.++...++        .|+.+|.. +.+    .....+.+. .....+++.+++.++++.-.+
T Consensus        27 ~~lSGla~~~~--~~~L~aV~d~~~--------~I~~ld~~-g~v----~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~   90 (255)
T 3qqz_A           27 NNISSLTWSAQ--SNTLFSTINKPA--------AIVEMTTN-GDL----IRTIPLDFV-KDLETIEYIGDNQFVISDERD   90 (255)
T ss_dssp             SCEEEEEEETT--TTEEEEEEETTE--------EEEEEETT-CCE----EEEEECSSC-SSEEEEEECSTTEEEEEETTT
T ss_pred             cCcceeEEeCC--CCEEEEEECCCC--------eEEEEeCC-CCE----EEEEecCCC-CChHHeEEeCCCEEEEEECCC
Confidence            35788999876  366777777777        89999998 443    222223332 568899999988766665567


Q ss_pred             CcEEEEEEeCCccccceeeeeC--CCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC---ce--EEeec-----cc
Q 024868           85 GGCKLFEVYGGATDINLLAKKM--PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LR--IILDE-----PK  152 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~---~~--~~~~~-----~~  152 (261)
                      +.+.++++..............  ...........++|+|+++.|+++.......+|.+..   ..  .+...     ..
T Consensus        91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~  170 (255)
T 3qqz_A           91 YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF  170 (255)
T ss_dssp             TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred             CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence            7899999876553111111111  1123345679999999987777766554445555431   11  11100     01


Q ss_pred             cCCceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCC--------CceEEEEEecCCCcceEEEEEeeCCC
Q 024868          153 AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDK  223 (261)
Q Consensus       153 ~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~p~~~~~~~~~~~~~~~d  223 (261)
                      .-..+.+++++|. +++++....+..+.++|.+ |+.+..+.-..+        .....++|.++|+.      ...++.
T Consensus       171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l------yIvsE~  243 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI------YIVSEP  243 (255)
T ss_dssp             CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE------EEEETT
T ss_pred             ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE------EEEcCC
Confidence            1235789999995 5556666677889999965 666666553321        14789999999984      334566


Q ss_pred             cEEEEEECC
Q 024868          224 ALLAVYDIS  232 (261)
Q Consensus       224 ~~i~~~d~~  232 (261)
                      +.++.|.-.
T Consensus       244 n~~y~f~~~  252 (255)
T 3qqz_A          244 NRFYRFTPQ  252 (255)
T ss_dssp             TEEEEEEC-
T ss_pred             ceEEEEEec
Confidence            677777643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.04  E-value=5.4e-07  Score=67.34  Aligned_cols=186  Identities=6%  Similarity=-0.041  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      .|+.++.++........ ...+......+..++|+++++.|+.+. ..+.|..++..+... ....      ........
T Consensus        11 ~I~~~~~~g~~~~~~~~-~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~------~~~~~~p~   82 (267)
T 1npe_A           11 KIERLPLERNTMKKTEA-KAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTII------RQDLGSPE   82 (267)
T ss_dssp             EEEEEEESSSCBCGGGC-EEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEE------CTTCCCEE
T ss_pred             eEEEEEecCcccccccc-eeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEE------ECCCCCcc
Confidence            67777766544211000 001111123578999999776666554 467899999876542 1111      01124678


Q ss_pred             EEEEeeCCcEEEEe-ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC---CCcEEEEEccCCcEEEEE
Q 024868          117 CLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFL  192 (261)
Q Consensus       117 ~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~  192 (261)
                      .++++|++..|+.+ ...+.|.+++...................++++|++..|+.+..   .+.|..+++.. +....+
T Consensus        83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~  161 (267)
T 1npe_A           83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRIL  161 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEE
T ss_pred             EEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEE
Confidence            99999976555544 45678999998643322112222245789999997665554443   36788888764 333333


Q ss_pred             eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       193 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      ..........++++|++..+|    ++....+.|.++|......
T Consensus       162 ~~~~~~~P~gia~d~~~~~ly----v~d~~~~~I~~~~~~g~~~  201 (267)
T 1npe_A          162 AQDNLGLPNGLTFDAFSSQLC----WVDAGTHRAECLNPAQPGR  201 (267)
T ss_dssp             ECTTCSCEEEEEEETTTTEEE----EEETTTTEEEEEETTEEEE
T ss_pred             EECCCCCCcEEEEcCCCCEEE----EEECCCCEEEEEecCCCce
Confidence            212223478999999988743    4556677999999975443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.02  E-value=6.3e-08  Score=76.15  Aligned_cols=157  Identities=11%  Similarity=0.023  Sum_probs=95.3

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccCCeEEEEEccCceEEeeccc
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  152 (261)
                      +..++.+..++.+..+|..+++..................+..+.-.|  .+..+++++.++.+..+|..+++.+.....
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~  267 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL  267 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence            346777778889999998877653332111000000000000000111  245677777889999999999988765442


Q ss_pred             cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       153 ~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                        .....+..  ++..++.++.++.+..+|..+++.+.............+...  +..     ++.++.+|.++++|.+
T Consensus       268 --~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~-----l~v~~~~g~l~~~d~~  336 (376)
T 3q7m_A          268 --GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGN-----LVVGDSEGYLHWINVE  336 (376)
T ss_dssp             --CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTE-----EEEECTTSEEEEEETT
T ss_pred             --CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCE-----EEEEeCCCeEEEEECC
Confidence              23344433  366777778889999999999998776652222123333332  334     4667788999999999


Q ss_pred             CCeEEeeeec
Q 024868          233 TWNKIGHKRL  242 (261)
Q Consensus       233 ~~~~~~~~~~  242 (261)
                      +++.+.....
T Consensus       337 tG~~~~~~~~  346 (376)
T 3q7m_A          337 DGRFVAQQKV  346 (376)
T ss_dssp             TCCEEEEEEC
T ss_pred             CCcEEEEEec
Confidence            9998766554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.02  E-value=1.1e-11  Score=97.43  Aligned_cols=147  Identities=14%  Similarity=0.037  Sum_probs=78.0

Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecccc
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  153 (261)
                      ++..+++++.||.|+.||..+++...+...         +.+.+..+..+++.+++++.|+.|+.||..+++.+.....+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            577899999999999999998876443321         22333334567778888889999999999888775544322


Q ss_pred             CC-cee-EEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          154 HK-SVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       154 ~~-~v~-~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      .. .+. ...+. ++..+++++.++.++.||.++|+.+..+..+.     ...++|++..     ++.++.++.|+.||.
T Consensus        79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~-----v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSL-----LYLGRTEYTITMYDT  147 (369)
T ss_dssp             HHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCS
T ss_pred             CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCE-----EEEEecCCEEEEEEC
Confidence            11 111 11111 34567788889999999999999887776432     1345677776     566778899999999


Q ss_pred             CCCeEEeee
Q 024868          232 STWNKIGHK  240 (261)
Q Consensus       232 ~~~~~~~~~  240 (261)
                      ++|+.+..+
T Consensus       148 ~tG~~~W~~  156 (369)
T 2hz6_A          148 KTRELRWNA  156 (369)
T ss_dssp             SSSSCCCEE
T ss_pred             CCCCEEEeE
Confidence            998865443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.01  E-value=1.9e-08  Score=86.23  Aligned_cols=156  Identities=11%  Similarity=0.029  Sum_probs=95.1

Q ss_pred             CceEEEEC-CCCCeEEEEec-CC----cEEEEEEeCC-ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC----
Q 024868           65 DPMTIAVN-PSGDDFVCSTT-NG----GCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----  133 (261)
Q Consensus        65 ~v~~~~~~-~~~~~l~~~~~-dg----~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  133 (261)
                      .+...+|| |||++|+.+.. +|    +|+++|+.++ ......+         ......+.|+|||+.|+....+    
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---------~~~~~~~~WspDg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---------SGTNGEIVWGPDHTSLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---------EEECSCCEECSSTTEEEEEEECTTCC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---------cCceeeEEEecCCCEEEEEEECCCCC
Confidence            57789999 99999886544 23    4999999887 4211101         0113468899999888877654    


Q ss_pred             -CeEEEEEccCceE--Eeecc-ccCCceeEEEEcCCCCEEEEecC---CCcEEEEEccCCc-EE--EEEeecCCCceEEE
Q 024868          134 -GHLRIMHWPSLRI--ILDEP-KAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGV-AW--TFLTRNSDEKIELC  203 (261)
Q Consensus       134 -~~i~~~d~~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~-~~--~~~~~~~~~~v~~~  203 (261)
                       ..|+++++.++..  ...+. ........+.|||||++|+..+.   ...|+++|+.++. ..  ..+.........++
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~  325 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV  325 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence             2588888876531  11111 22234568899999998886552   3468889988752 22  33433333345555


Q ss_pred             EEecCCCcceEEEEEeeC---CCcEEEEEECCC
Q 024868          204 RFSKDGTKPFLFCTVQRG---DKALLAVYDIST  233 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~---~d~~i~~~d~~~  233 (261)
                      .|+. |+.+++   .+..   ....|..+|+.+
T Consensus       326 ~~~~-g~~l~~---~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          326 QMHG-TSHLVI---LTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEET-TTEEEE---EECTTTCTTCEEEEEETTS
T ss_pred             eeee-CCEEEE---EeCCCCCCCcEEEEEcCCC
Confidence            5543 555321   2221   235788888865

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.98  E-value=2.3e-07  Score=71.37  Aligned_cols=191  Identities=11%  Similarity=0.055  Sum_probs=114.9

Q ss_pred             ecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCC--------------CCCCCCeEEEEEee-C
Q 024868           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP--------------LQDAGPQKCLSFSV-D  123 (261)
Q Consensus        59 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~v~~~~~s~-~  123 (261)
                      +++.-....+++|.++++.++++..++.|..|+..++....  .......              ......+..+++++ +
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD--FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE--EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE--EecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            44333456789999999878888888889999876543211  1000000              00113578899998 6


Q ss_pred             CcEEEEeccCCeEEEEEccCceEEeecc--c--cCCceeEEEEcC-CCCEEEEecC-----------------CCcEEEE
Q 024868          124 GSRFAAGGVDGHLRIMHWPSLRIILDEP--K--AHKSVLDMDFSL-DSEFLATTST-----------------DGSARIW  181 (261)
Q Consensus       124 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~--~~~~v~~~~~s~-~~~~l~~~~~-----------------d~~i~iw  181 (261)
                      ++++++ ...+.+..+|..++.......  .  .......+++.| +|++.++...                 ++.|..|
T Consensus        92 g~l~v~-d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           92 NQLYIV-DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             TEEEEE-ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             CcEEEE-ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            655544 344558888876553211111  1  112467899999 9987766432                 3678888


Q ss_pred             EccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC---eEEeeeeccCcCeeEEEEeeCCCE
Q 024868          182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRKPASVLSISLDGKY  258 (261)
Q Consensus       182 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~dg~~  258 (261)
                      |..+++....... .. ....++|+|+|+.+|    ++....+.|++|++...   +.. .+....+ ...++++++|++
T Consensus       171 d~~~~~~~~~~~~-~~-~p~gia~~~dg~~ly----v~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          171 DPSTKETTLLLKE-LH-VPGGAEVSADSSFVL----VAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHF  242 (322)
T ss_dssp             ETTTTEEEEEEEE-ES-CCCEEEECTTSSEEE----EEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCE
T ss_pred             eCCCCEEEEeccC-Cc-cCcceEECCCCCEEE----EEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCE
Confidence            9877765333222 12 367899999998632    34445678999998742   211 1111223 677888888875


Q ss_pred             Ee
Q 024868          259 LA  260 (261)
Q Consensus       259 la  260 (261)
                      .+
T Consensus       243 ~v  244 (322)
T 2fp8_A          243 WV  244 (322)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.97  E-value=3.5e-07  Score=66.56  Aligned_cols=177  Identities=10%  Similarity=0.091  Sum_probs=114.0

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE-EecCCc
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC-STTNGG   86 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~   86 (261)
                      ..+.|.+    ..+..+++..+.+      .|..+|+.+++.    .....+..   ........+.++.|.. ...++.
T Consensus        24 qGL~~~~----~~LyestG~~g~S------~v~~vD~~tgkv----~~~~~l~~---~~fgeGi~~~~~~ly~ltw~~~~   86 (243)
T 3mbr_X           24 EGLFYLR----GHLYESTGETGRS------SVRKVDLETGRI----LQRAEVPP---PYFGAGIVAWRDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEET----TEEEEEECCTTSC------EEEEEETTTCCE----EEEEECCT---TCCEEEEEEETTEEEEEESSSSE
T ss_pred             ccEEEEC----CEEEEECCCCCCc------eEEEEECCCCCE----EEEEeCCC---CcceeEEEEeCCEEEEEEeeCCE
Confidence            3455554    4566666666555      899999998876    22223332   2322323333455544 445789


Q ss_pred             EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-----CceeEEE
Q 024868           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----KSVLDMD  161 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~  161 (261)
                      +.+||..+.+....+.        ...  ....+.++++.|+.+..++.|.++|..+.+.+..+.-..     ..+..+.
T Consensus        87 v~v~D~~tl~~~~ti~--------~~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe  156 (243)
T 3mbr_X           87 GFVYDLATLTPRARFR--------YPG--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE  156 (243)
T ss_dssp             EEEEETTTTEEEEEEE--------CSS--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EEEEECCcCcEEEEEe--------CCC--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence            9999998876532221        111  123445677777777778899999999887765544321     2355677


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec------------CCCceEEEEEecCCCcc
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------------SDEKIELCRFSKDGTKP  212 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~p~~~~~  212 (261)
                      |. +|+..+..-.+..|.+.|.++++.+..+...            ...-.+.++++|+++.+
T Consensus       157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l  218 (243)
T 3mbr_X          157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL  218 (243)
T ss_dssp             EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred             Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence            66 6776666657789999999999999887632            12246889999998874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.97  E-value=1.7e-07  Score=68.88  Aligned_cols=170  Identities=12%  Similarity=0.060  Sum_probs=111.3

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCcc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGAT   97 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~   97 (261)
                      ..+..+++..+.+      .|..+|+.+++.    .....+.   .........++++.|.... .++.+.+||..+.+.
T Consensus        53 ~~LyestG~~g~S------~v~~vD~~Tgkv----~~~~~l~---~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           53 GYFYESTGLNGRS------SIRKVDIESGKT----LQQIELG---KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             TEEEEEEEETTEE------EEEEECTTTCCE----EEEEECC---TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred             CEEEEECCCCCCc------eEEEEECCCCcE----EEEEecC---CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence            3455666555544      789999998876    2222232   2333333333455665544 578999999988775


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-----CceeEEEEcCCCCEEEEe
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----KSVLDMDFSLDSEFLATT  172 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~  172 (261)
                      ...+.        ...  ....+++|++.|+.+..++.|.++|..+.+....+....     ..+..+.|. +|+..+..
T Consensus       120 ~~ti~--------~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~  188 (262)
T 3nol_A          120 VRSFN--------YDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV  188 (262)
T ss_dssp             EEEEE--------CSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             EEEEE--------CCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence            32221        111  223455778888777667889999999887765544321     234567776 77766666


Q ss_pred             cCCCcEEEEEccCCcEEEEEeecC-----------CCceEEEEEecCCCcc
Q 024868          173 STDGSARIWKTEDGVAWTFLTRNS-----------DEKIELCRFSKDGTKP  212 (261)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~v~~~~~~p~~~~~  212 (261)
                      -.++.|.+.|.++++.+..+....           ....+.++|+|+++.+
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence            678899999999999998886421           1246889999999884

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.97  E-value=2e-07  Score=68.52  Aligned_cols=167  Identities=5%  Similarity=-0.046  Sum_probs=111.1

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEecCCcEEEEEEeCCcc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGAT   97 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~   97 (261)
                      ..+.++++.++        +|..+|+.+++.    .... +... ..-..+++  +++.|. ....++.+.+||..+.+.
T Consensus        65 ~~Ly~stG~~g--------~v~~iD~~Tgkv----~~~~-l~~~-~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~  128 (268)
T 3nok_A           65 GHFFESTGHQG--------TLRQLSLESAQP----VWME-RLGN-IFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQR  128 (268)
T ss_dssp             TEEEEEETTTT--------EEEECCSSCSSC----SEEE-ECTT-CCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEE
T ss_pred             CEEEEEcCCCC--------EEEEEECCCCcE----EeEE-CCCC-cceeEEEE--eCCEEEEEEccCCEEEEEECCcCcE
Confidence            56777777778        799999998875    2222 3321 11123555  444444 444678999999988775


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC-----CceeEEEEcCCCCEEEEe
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-----KSVLDMDFSLDSEFLATT  172 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~  172 (261)
                      ...+.     . .  ..  ...+.+|++.|+.+..++.|.++|..+.+.+..+....     ..+..+.|. +|+..+..
T Consensus       129 ~~ti~-----~-~--~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv  197 (268)
T 3nok_A          129 ERTTR-----Y-S--GE--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI  197 (268)
T ss_dssp             EEEEE-----C-S--SC--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             EEEEe-----C-C--Cc--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence            33221     1 1  11  13344678888877778899999999887765544322     235667777 77766666


Q ss_pred             cCCCcEEEEEccCCcEEEEEeec------------CCCceEEEEEecCCCcc
Q 024868          173 STDGSARIWKTEDGVAWTFLTRN------------SDEKIELCRFSKDGTKP  212 (261)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~p~~~~~  212 (261)
                      -.++.|.+.|.++++.+..+...            ...-.+.++|+|+++.+
T Consensus       198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl  249 (268)
T 3nok_A          198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI  249 (268)
T ss_dssp             TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred             CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence            67889999999999998887642            11246889999998884

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.96  E-value=3.1e-07  Score=77.98  Aligned_cols=160  Identities=13%  Similarity=0.135  Sum_probs=95.3

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECC---CCCeEEEEe------cCCcEEEE
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGDDFVCST------TNGGCKLF   90 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~------~dg~i~i~   90 (261)
                      ..+++++.++        .++.+|..+++....    .....+......+..+|   ++ .++++.      .+|.|+.|
T Consensus       122 g~v~v~~~dg--------~l~AlDa~TG~~~W~----~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~  188 (689)
T 1yiq_A          122 GKVYVGVLDG--------RLEAIDAKTGQRAWS----VDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAY  188 (689)
T ss_dssp             TEEEEECTTS--------EEEEEETTTCCEEEE----EECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEE
T ss_pred             CEEEEEccCC--------EEEEEECCCCCEeee----ecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEE
Confidence            3566677777        899999988775221    11110111111111222   44 444443      26889999


Q ss_pred             EEeCCccccceeeeeCCCC------------------------CCCCCeEEEEEeeCCcEEEEeccCC------------
Q 024868           91 EVYGGATDINLLAKKMPPL------------------------QDAGPQKCLSFSVDGSRFAAGGVDG------------  134 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~~~~l~~~~~d~------------  134 (261)
                      |..+++.............                        .+......++++|++.+++++..++            
T Consensus       189 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~  268 (689)
T 1yiq_A          189 DAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAK  268 (689)
T ss_dssp             ETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTC
T ss_pred             ECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence            9998876443321000000                        0011123578899888888887765            


Q ss_pred             -------eEEEEEccCceEEeeccccC---------CceeEEEEcCCCC---EEEEecCCCcEEEEEccCCcEEEEE
Q 024868          135 -------HLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDSE---FLATTSTDGSARIWKTEDGVAWTFL  192 (261)
Q Consensus       135 -------~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~  192 (261)
                             .|..+|.++++.+..+...+         .+..-.....+|+   .++.++.+|.++++|.++|+.+...
T Consensus       269 gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          269 GDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK  345 (689)
T ss_dssp             SCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             CCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence                   39999999999887664321         1111222233565   7888999999999999999987543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.94  E-value=4.2e-06  Score=65.11  Aligned_cols=216  Identities=6%  Similarity=-0.076  Sum_probs=124.9

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecCC
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNG   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg   85 (261)
                      +..++|.+.  ...+.++-...+        .|+.+++++...      .............+++.+.+..|+.+ ...+
T Consensus        75 ~~~l~~d~~--~~~ly~~D~~~~--------~I~r~~~~g~~~------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~  138 (349)
T 3v64_C           75 AIALDFHHR--RELVFWSDVTLD--------RILRANLNGSNV------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTS  138 (349)
T ss_dssp             EEEEEEETT--TTEEEEEETTTT--------EEEEEETTSCSC------EEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             eEEEEEecc--ccEEEEEeccCC--------ceEEEecCCCCc------eEEEeCCCCCccEEEEecCCCeEEEEcCCCC
Confidence            456777654  245555554555        788888776542      22222233456789998865555444 4457


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cC-CeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD-GHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      .|.+.+++.... ..+.      .........++++|.+..|+... .. +.|..+++............-.....++++
T Consensus       139 ~I~~~~~dG~~~-~~l~------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d  211 (349)
T 3v64_C          139 RIEVANLDGAHR-KVLL------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTID  211 (349)
T ss_dssp             EEEEEETTSCSC-EEEE------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEE
T ss_pred             eEEEEcCCCCce-EEEE------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEe
Confidence            788888865432 1111      01234568999999665555543 34 778888876433322222223357899999


Q ss_pred             CCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          164 LDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       164 ~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      |++..|+.+ ...+.|..+|+........+..... ....+++. .+..     ..+....+.|..+|..+++.+..+..
T Consensus       212 ~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~-~~~l-----y~td~~~~~V~~~~~~~G~~~~~i~~  284 (349)
T 3v64_C          212 YAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSL-----YWTDWHTKSINSANKFTGKNQEIIRN  284 (349)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEE-TTEE-----EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-CceEEEEE-CCEE-----EEecCCCCeEEEEEccCCCccEEecc
Confidence            876666554 4567899999875433333332223 46788883 3432     25556677899998766665544443


Q ss_pred             cCcCeeEEEE
Q 024868          243 LRKPASVLSI  252 (261)
Q Consensus       243 ~~~~v~~~~~  252 (261)
                      .......+++
T Consensus       285 ~~~~p~gi~v  294 (349)
T 3v64_C          285 KLHFPMDIHT  294 (349)
T ss_dssp             SCSCCCCEEE
T ss_pred             CCCCCceEEE
Confidence            2233344443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=2.7e-07  Score=78.22  Aligned_cols=158  Identities=9%  Similarity=0.093  Sum_probs=96.9

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-C----CCce-EEEECCCCCeEEEEec------CCcE
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-E----GDPM-TIAVNPSGDDFVCSTT------NGGC   87 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~----~~v~-~~~~~~~~~~l~~~~~------dg~i   87 (261)
                      ..+.++..++        .++.+|..+++..      ..+..+ .    ..+. ....  .+..+++++.      ++.|
T Consensus       129 ~~v~v~~~dg--------~l~alD~~tG~~~------W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v  192 (677)
T 1kb0_A          129 GKVYVGAWDG--------RLIALDAATGKEV------WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYI  192 (677)
T ss_dssp             TEEEEECTTS--------EEEEEETTTCCEE------EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEE
T ss_pred             CEEEEEcCCC--------EEEEEECCCCCEE------eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEE
Confidence            3566666777        8999999887752      122211 0    1111 1111  2345555543      6889


Q ss_pred             EEEEEeCCccccceeeeeCCC---------------C----------CCCCCeEEEEEeeCCcEEEEeccCC--------
Q 024868           88 KLFEVYGGATDINLLAKKMPP---------------L----------QDAGPQKCLSFSVDGSRFAAGGVDG--------  134 (261)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~---------------~----------~~~~~v~~~~~s~~~~~l~~~~~d~--------  134 (261)
                      +.+|..+++...+........               .          .+......++++|++..++++..++        
T Consensus       193 ~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~  272 (677)
T 1kb0_A          193 TAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVR  272 (677)
T ss_dssp             EEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred             EEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCC
Confidence            999998887644332111000               0          0111224578899888888876553        


Q ss_pred             -----------eEEEEEccCceEEeeccccC---------CceeEEEEcCCC---CEEEEecCCCcEEEEEccCCcEEEE
Q 024868          135 -----------HLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDS---EFLATTSTDGSARIWKTEDGVAWTF  191 (261)
Q Consensus       135 -----------~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~---~~l~~~~~d~~i~iwd~~~~~~~~~  191 (261)
                                 .|..+|.++++.+..+...+         ....-+....+|   ..++.++.+|.++++|..+|+.+..
T Consensus       273 ~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~  352 (677)
T 1kb0_A          273 SPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA  352 (677)
T ss_dssp             STTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             CccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecc
Confidence                       59999999999877654321         112223333477   6789999999999999999999877


Q ss_pred             Ee
Q 024868          192 LT  193 (261)
Q Consensus       192 ~~  193 (261)
                      +.
T Consensus       353 ~~  354 (677)
T 1kb0_A          353 KN  354 (677)
T ss_dssp             EE
T ss_pred             cc
Confidence            65

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=5.6e-07  Score=76.16  Aligned_cols=183  Identities=13%  Similarity=0.140  Sum_probs=115.9

Q ss_pred             EEEECCCCCeEEEEecCC-------------------cEEEEEEeCCccccceeeeeCC--CCCCCCCeEEEEEeeCCc-
Q 024868           68 TIAVNPSGDDFVCSTTNG-------------------GCKLFEVYGGATDINLLAKKMP--PLQDAGPQKCLSFSVDGS-  125 (261)
Q Consensus        68 ~~~~~~~~~~l~~~~~dg-------------------~i~i~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~-  125 (261)
                      .+++.|+...++.+..++                   .|..+|..+++...........  ......+.....+..+|+ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            478888888888777665                   3888888888754432211000  000113333334445776 


Q ss_pred             --EEEEeccCCeEEEEEccCceEEeeccccC------------Cc------------------------eeEEEEcCCCC
Q 024868          126 --RFAAGGVDGHLRIMHWPSLRIILDEPKAH------------KS------------------------VLDMDFSLDSE  167 (261)
Q Consensus       126 --~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------~~------------------------v~~~~~s~~~~  167 (261)
                        .++.++.+|.++++|..+++.+.......            .+                        -..++++|+..
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g  393 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG  393 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred             EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence              68888899999999999998763221110            00                        01267788766


Q ss_pred             EEEEe------------------------------------cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          168 FLATT------------------------------------STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       168 ~l~~~------------------------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      .++..                                    ..++.|..||+.+++.+.+.....  +.....+...+..
T Consensus       394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~  471 (668)
T 1kv9_A          394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNL  471 (668)
T ss_dssp             EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTE
T ss_pred             EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCE
Confidence            65541                                    124789999999999988776543  2444445666776


Q ss_pred             ceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe-eEEEEeeCCC
Q 024868          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGK  257 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~s~dg~  257 (261)
                           ++.++.|+.++.||.++++.+..+....... .-+.+..+|+
T Consensus       472 -----vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~  513 (668)
T 1kv9_A          472 -----VFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR  513 (668)
T ss_dssp             -----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             -----EEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE
Confidence                 4667889999999999999987666543211 2344556666

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.92  E-value=1.8e-06  Score=63.70  Aligned_cols=192  Identities=8%  Similarity=0.074  Sum_probs=122.0

Q ss_pred             eeecCCCCCceEEEECCCCCeEEE-EecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868           57 YVFDESEGDPMTIAVNPSGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (261)
Q Consensus        57 ~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  135 (261)
                      +.+++-...+..++|+|+++.|++ ...++.|...|.. ++.....      .+........+++.+++.++++.-.++.
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i------~l~g~~D~EGIa~~~~g~~~vs~E~~~~   92 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI------PLDFVKDLETIEYIGDNQFVISDERDYA   92 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE------ECSSCSSEEEEEECSTTEEEEEETTTTE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE------ecCCCCChHHeEEeCCCEEEEEECCCCc
Confidence            356666678999999998776654 5666777777776 3321111      1233356788999999987777656788


Q ss_pred             EEEEEccCceEE---eec------cccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc---CCcEEEEEee------cCC
Q 024868          136 LRIMHWPSLRII---LDE------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE---DGVAWTFLTR------NSD  197 (261)
Q Consensus       136 i~~~d~~~~~~~---~~~------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~------~~~  197 (261)
                      +.++++.....+   ...      .........++|+|.++.|+++.......||.++   ..+.+..+..      ...
T Consensus        93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A           93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL  172 (255)
T ss_dssp             EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred             EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence            999887654321   111      1122357899999998777766655555555553   1122222211      111


Q ss_pred             CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC---------cCeeEEEEeeCCCEEe
Q 024868          198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLA  260 (261)
Q Consensus       198 ~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~dg~~la  260 (261)
                      ..+.+++++|....+    ++.+.....+..+|.. ++.+..+....         .....++|.++|+..+
T Consensus       173 ~d~S~l~~dp~tg~l----liLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI  239 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTL----LVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI  239 (255)
T ss_dssp             SCCCEEEEETTTTEE----EEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred             CCceeEEEcCCCCeE----EEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence            247899999987764    3556777899999976 55655554432         2457899999998654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.91  E-value=1.6e-08  Score=77.88  Aligned_cols=198  Identities=14%  Similarity=0.079  Sum_probs=117.8

Q ss_pred             EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc
Q 024868           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN  100 (261)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  100 (261)
                      .+.+++.++        .++.+| .+++.      ......+...+.++...+++. +..++.+  +..+|. +++....
T Consensus        32 ~l~v~t~~~--------~l~~~d-~~g~~------~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~   92 (330)
T 3hxj_A           32 TIYLGSSNK--------NLYAIN-TDGSV------KWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWR   92 (330)
T ss_dssp             CEECSSTTT--------TTEEEC-TTSCE------EESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGG
T ss_pred             eEEEEcCCC--------EEEEEC-CCCcE------EEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEE
Confidence            455555555        567788 55543      111222223456666766775 4444444  777775 3332111


Q ss_pred             eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEE
Q 024868          101 LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI  180 (261)
Q Consensus       101 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i  180 (261)
                      ..       ..........+.  +..+.+++.++.+..+|.. ++...........+.++...+++. +..++.++.+..
T Consensus        93 ~~-------~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~  161 (330)
T 3hxj_A           93 FD-------TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYA  161 (330)
T ss_dssp             SC-------C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEE
T ss_pred             EE-------CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEE
Confidence            10       001112222333  4456677788999999987 666555544444566677777776 555667899999


Q ss_pred             EEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       181 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                      +|.. ++....+..... .+.++...+++..      ..++  +.|..+| .+++.+.........+.++...++|+..
T Consensus       162 ~d~~-g~~~~~~~~~~~-~~~~~~~d~~g~l------~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~  229 (330)
T 3hxj_A          162 INPD-GTEKWRFKTNDA-ITSAASIGKDGTI------YFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY  229 (330)
T ss_dssp             ECTT-SCEEEEEECSSC-CCSCCEECTTCCE------EEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE
T ss_pred             ECCC-CCEeEEEecCCC-ceeeeEEcCCCEE------EEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE
Confidence            9998 877766654433 4667777778874      3333  6799999 7777665555455567777787776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.89  E-value=1.9e-06  Score=66.23  Aligned_cols=222  Identities=11%  Similarity=0.024  Sum_probs=125.9

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec------------------CCCCCceEE
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD------------------ESEGDPMTI   69 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------------------~~~~~v~~~   69 (261)
                      .+++|.++   .+++.++..++        .|+.|++.+..+.     .....                  .....+..+
T Consensus        22 ~~i~~d~~---g~~l~v~~~~~--------~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi   85 (322)
T 2fp8_A           22 NSFTFDST---NKGFYTSVQDG--------RVIKYEGPNSGFV-----DFAYASPYWNKAFCENSTDAEKRPLCGRTYDI   85 (322)
T ss_dssp             CCEECCTT---CSSEEEECTTS--------EEEEECCTTTCEE-----EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEE
T ss_pred             eEEEEcCC---CCEEEEEcCCC--------eEEEECCCCCceE-----EEecccccccccccccccchhccccCCCCceE
Confidence            34556553   44455566666        8999988765431     11110                  011357889


Q ss_pred             EECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEecc---------------
Q 024868           70 AVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGV---------------  132 (261)
Q Consensus        70 ~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~---------------  132 (261)
                      ++.+ +++ |+++...+.+..+|..++..  ..+...... ........+++.+ +|+..++-..               
T Consensus        86 ~~~~~~g~-l~v~d~~~~i~~~d~~~g~~--~~~~~~~~~-~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~  161 (322)
T 2fp8_A           86 SYNLQNNQ-LYIVDCYYHLSVVGSEGGHA--TQLATSVDG-VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS  161 (322)
T ss_dssp             EEETTTTE-EEEEETTTEEEEECTTCEEC--EEEESEETT-EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred             EEcCCCCc-EEEEECCCCEEEEeCCCCEE--EEecccCCC-CcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence            9998 565 55554555577777554321  111100000 0123568899999 9987666432               


Q ss_pred             --CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe-cCCCcEEEEEccCCc--EEEEEeecCCCceEEEEEec
Q 024868          133 --DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSK  207 (261)
Q Consensus       133 --d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p  207 (261)
                        ++.|..+|..+++... ..........++++|+++.|+.+ +.++.|.+|++....  ....+.. ... ...+++.+
T Consensus       162 ~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~  238 (322)
T 2fp8_A          162 DKTGRLIKYDPSTKETTL-LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNA  238 (322)
T ss_dssp             CCCEEEEEEETTTTEEEE-EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECT
T ss_pred             CCCceEEEEeCCCCEEEE-eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECC
Confidence              3678888876665422 21122345679999999866554 556899999987421  1222222 223 77899999


Q ss_pred             CCCcceEEEEEeeC---------CCcEEEEEECCCCeEEeeeeccC----cCeeEEEEeeCCCE
Q 024868          208 DGTKPFLFCTVQRG---------DKALLAVYDISTWNKIGHKRLLR----KPASVLSISLDGKY  258 (261)
Q Consensus       208 ~~~~~~~~~~~~~~---------~d~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~dg~~  258 (261)
                      +|+. |+   +...         ..+.|..+|.. ++.+..+....    ..+..+++ .+|+.
T Consensus       239 ~G~l-~v---a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L  296 (322)
T 2fp8_A          239 DGHF-WV---SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLL  296 (322)
T ss_dssp             TSCE-EE---EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEE
T ss_pred             CCCE-EE---EecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEE
Confidence            9975 32   2211         24678888874 66665554332    34556665 45543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.88  E-value=8.7e-06  Score=63.33  Aligned_cols=196  Identities=5%  Similarity=-0.041  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      .|+.+++++...      ...... ...+..++|++....|.... ..+.|+.++..+..... ..      ........
T Consensus        54 ~I~~i~~~g~~~------~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~------~~~~~~p~  119 (349)
T 3v64_C           54 DIRQVLPHRSEY------TLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VV------STGLESPG  119 (349)
T ss_dssp             CEEEECTTSCCE------EEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EE------CSSCSCCC
T ss_pred             ceEEEeCCCCee------EEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-EE------eCCCCCcc
Confidence            467777766543      222332 34578999998666665544 46778888877654211 11      01123457


Q ss_pred             EEEEeeCCc-EEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe-cCC-CcEEEEEccCCcEEEEEe
Q 024868          117 CLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STD-GSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       117 ~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d-~~i~iwd~~~~~~~~~~~  193 (261)
                      .+++++.+. ++++-...+.|.+.++..................++++|.+..|+.. ..+ +.|..+++.... ...+.
T Consensus       120 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~  198 (349)
T 3v64_C          120 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIA  198 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESC
T ss_pred             EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEE
Confidence            899998554 44554567789999976443322222233457899999966555544 344 778888876433 33332


Q ss_pred             ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE
Q 024868          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI  252 (261)
Q Consensus       194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  252 (261)
                      ...-.....++++|++..+|    ++-...+.|..+|+..................+++
T Consensus       199 ~~~~~~PnGla~d~~~~~lY----~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav  253 (349)
T 3v64_C          199 DTHLFWPNGLTIDYAGRRMY----WVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  253 (349)
T ss_dssp             CSSCSCEEEEEEETTTTEEE----EEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             ECCCCCcceEEEeCCCCEEE----EEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence            22223478999999888744    44455678999998753322222222234456666

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.87  E-value=1.6e-06  Score=74.49  Aligned_cols=202  Identities=9%  Similarity=-0.026  Sum_probs=107.4

Q ss_pred             eeeEEEEE-eeCCcceEEEEecCCCCCCCCCceEEEEEcCCCC-ceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            6 TVTCGSWI-KRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT-SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         6 ~v~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+...+|+ |+   ..++|.+....  |. ....|+.+|..++ .....     .+.   .....++|+|||+.|+....
T Consensus       175 ~~~~~~~S~PD---G~~lAy~~~~~--G~-~~~~l~v~dl~~g~~~l~~-----~~~---~~~~~~~WspDg~~l~y~~~  240 (751)
T 2xe4_A          175 DVMEVKPAPPE---HDLVAFSVDMS--GN-EVYTIEFKRISDPSQTIAD-----KVS---GTNGEIVWGPDHTSLFYVTK  240 (751)
T ss_dssp             EEEEEEECTTT---TCEEEEEEESS--SS-SCEEEEEEETTCTTCCCCC-----CEE---EECSCCEECSSTTEEEEEEE
T ss_pred             EEeeeEecCCC---CCEEEEEEeCC--CC-ceEEEEEEECCCCCEeCCc-----ccc---CceeeEEEecCCCEEEEEEE
Confidence            45667888 75   44555443221  11 1236889998877 52111     111   11356889999998887766


Q ss_pred             C-----CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEEEccCce-EE--eecc-
Q 024868           84 N-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLR-II--LDEP-  151 (261)
Q Consensus        84 d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~-~~--~~~~-  151 (261)
                      +     ..|+.+++.+.......+...    ........+.|||||++|+....   ...|+++|+.++. ..  ..+. 
T Consensus       241 d~~~~~~~v~~~~lgt~~~~~~lv~~~----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          241 DETLRENKVWRHVMGKLQSEDVCLYEE----HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             CTTCCEEEEEEEETTSCGGGCEEEEEC----CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             CCCCCCCEEEEEECCCCchhcEEEEec----CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence            5     246667766543211111110    11234567899999999887652   3468889987652 11  2222 


Q ss_pred             ccCCceeEEEEcCCCCEEEEecCC----CcEEEEEccCC-cEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeCCCc-
Q 024868          152 KAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDG-VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-  224 (261)
Q Consensus       152 ~~~~~v~~~~~s~~~~~l~~~~~d----~~i~iwd~~~~-~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~-  224 (261)
                      .......++.|+.++.+++....+    ..|..+|+.++ +... .+.......+..  +++.+..+    ++....++ 
T Consensus       317 ~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~--~~~~~~~l----v~~~~~~g~  390 (751)
T 2xe4_A          317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMES--IAVRSNYL----VVAGRRAGL  390 (751)
T ss_dssp             CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEE--EEECSSEE----EEEEEETTE
T ss_pred             CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEE--EEEECCEE----EEEEEeCCE
Confidence            223455666665544444454443    35667777642 2222 222222212344  45556653    23333344 


Q ss_pred             -EEEEEEC
Q 024868          225 -LLAVYDI  231 (261)
Q Consensus       225 -~i~~~d~  231 (261)
                       .|+++|+
T Consensus       391 ~~l~~~dl  398 (751)
T 2xe4_A          391 TRIWTMMA  398 (751)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence             5777776

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.87  E-value=9.3e-07  Score=73.51  Aligned_cols=166  Identities=11%  Similarity=0.078  Sum_probs=100.6

Q ss_pred             CcEEEEEEeCCccccceeeeeCCC--CCC-CCCeEEEEEe-eCCc---EEEEeccCCeEEEEEccCceEEeeccccC---
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPP--LQD-AGPQKCLSFS-VDGS---RFAAGGVDGHLRIMHWPSLRIILDEPKAH---  154 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~--~~~-~~~v~~~~~s-~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---  154 (261)
                      +.|.-+|..+++............  +.. ..++. +... .+|+   .++.++.+|.++++|..+++.+.......   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            578888888887644321110000  000 11222 2222 4674   67788899999999999988765433221   


Q ss_pred             ----------Cc--------------------------------eeEEEEcCCCCEEEEec-------------------
Q 024868          155 ----------KS--------------------------------VLDMDFSLDSEFLATTS-------------------  173 (261)
Q Consensus       155 ----------~~--------------------------------v~~~~~s~~~~~l~~~~-------------------  173 (261)
                                .+                                -..++++|+..++++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      00                                01346666655554422                   


Q ss_pred             --------------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          174 --------------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       174 --------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                                    .++.|.-||+.+++.+.+......  ...-.....+..     ++.++.|+.++.||.++|+.+..
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~--~~~g~~~taggl-----vf~g~~dg~l~A~D~~tG~~lW~  522 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP--LWAGVLATAGNL-----VFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC--CCSCCEEETTTE-----EEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC--CcccceEeCCCE-----EEEECCCCcEEEEECCCCCEEEE
Confidence                          257899999999998877764432  222222334554     45688899999999999999877


Q ss_pred             eeccCcCe-eEEEEeeCCCE
Q 024868          240 KRLLRKPA-SVLSISLDGKY  258 (261)
Q Consensus       240 ~~~~~~~v-~~~~~s~dg~~  258 (261)
                      +....... .-+.+..||+.
T Consensus       523 ~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          523 FQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EECSSCCCSCCEEEEETTEE
T ss_pred             ecCCCCcccCceEEEECCEE
Confidence            76543322 23677788874

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.86  E-value=3.9e-06  Score=66.22  Aligned_cols=217  Identities=6%  Similarity=-0.075  Sum_probs=125.2

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d   84 (261)
                      .+..++|.+.  ...++++-...+        .|+.+++++...      ...+.........+++.+.+..|+.+ ...
T Consensus       117 ~~~gl~~d~~--~~~ly~~D~~~~--------~I~r~~~~g~~~------~~~~~~~~~~p~glavd~~~g~lY~~d~~~  180 (386)
T 3v65_B          117 NAIALDFHHR--RELVFWSDVTLD--------RILRANLNGSNV------EEVVSTGLESPGGLAVDWVHDKLYWTDSGT  180 (386)
T ss_dssp             CEEEEEEETT--TTEEEEEETTTT--------EEEEEETTSCCE------EEEECSSCSCCCCEEEETTTTEEEEEETTT
T ss_pred             ccEEEEEecC--CCeEEEEeCCCC--------cEEEEecCCCCc------EEEEeCCCCCccEEEEEeCCCeEEEEcCCC
Confidence            3456777654  245555555555        788888776542      22233233456778888765555544 445


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cC-CeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD-GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      +.|.+.+++.... ..+.      .........++++|.+..|+.+. .. +.|..+++............-.....+++
T Consensus       181 ~~I~~~~~dg~~~-~~l~------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlav  253 (386)
T 3v65_B          181 SRIEVANLDGAHR-KVLL------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTI  253 (386)
T ss_dssp             TEEEECBTTSCSC-EEEE------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             CeEEEEeCCCCce-EEee------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEE
Confidence            6777777765432 1111      11234578999999766655553 33 67888887543332222222335789999


Q ss_pred             cCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       163 s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      +|++..|+.+ +..+.|..+|+........+..... ....+++. .+..     ..+....+.|..+|..+++.+..+.
T Consensus       254 d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~-~~~l-----y~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          254 DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAITVF-EDSL-----YWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCS-SEEEEEEE-TTEE-----EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCC-CceEEEEE-CCEE-----EEeeCCCCeEEEEECCCCcceEEEc
Confidence            9876655544 4567899999865433333332223 46788883 3332     2555667889999976776554444


Q ss_pred             ccCcCeeEEEE
Q 024868          242 LLRKPASVLSI  252 (261)
Q Consensus       242 ~~~~~v~~~~~  252 (261)
                      ........+++
T Consensus       327 ~~~~~p~gi~v  337 (386)
T 3v65_B          327 NKLHFPMDIHT  337 (386)
T ss_dssp             CSCSCCCCEEE
T ss_pred             cCCCCCceEEE
Confidence            33233444544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.86  E-value=2.3e-06  Score=71.06  Aligned_cols=185  Identities=14%  Similarity=0.012  Sum_probs=111.8

Q ss_pred             EEEECCCCCeEEEEecC----------------CcEEEEEEeCCccccceeeeeCCC--CC-CCCCeEEEEEeeCCc---
Q 024868           68 TIAVNPSGDDFVCSTTN----------------GGCKLFEVYGGATDINLLAKKMPP--LQ-DAGPQKCLSFSVDGS---  125 (261)
Q Consensus        68 ~~~~~~~~~~l~~~~~d----------------g~i~i~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~~~s~~~~---  125 (261)
                      .+++.++...++.+..+                +.|..+|..+++............  .. ...++. +...++|+   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            35566666666655432                258888888877533321110000  00 112222 33335784   


Q ss_pred             EEEEeccCCeEEEEEccCceEEeeccccC-------------Cce--------------------------eEEEEcCCC
Q 024868          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAH-------------KSV--------------------------LDMDFSLDS  166 (261)
Q Consensus       126 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~s~~~  166 (261)
                      .++.++.+|.++++|..+++.+.......             .++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            56778889999999999998765543211             011                          246788877


Q ss_pred             CEEEEec-------------------------------------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCC
Q 024868          167 EFLATTS-------------------------------------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (261)
Q Consensus       167 ~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~  209 (261)
                      .+++...                                     .++.+..||..+++.+.++.....  +....+...+
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~--~~~~~~~t~g  475 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKG  475 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETT
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC--ccceeEEECC
Confidence            7666543                                     357899999999998887764322  3333334445


Q ss_pred             CcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcC-eeEEEEeeCCCEEe
Q 024868          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKYLA  260 (261)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~dg~~la  260 (261)
                      ..     ++.++.|+.|+.+|.++++.+..+...... -..+.+..+|+.++
T Consensus       476 g~-----v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          476 GL-----VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             TE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CE-----EEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence            55     355788999999999999998776644321 22345667887543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.81  E-value=7.8e-06  Score=64.52  Aligned_cols=196  Identities=5%  Similarity=-0.023  Sum_probs=115.0

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      .|+.+++.+...      ..... ....+..++|.+.+..|+... ..+.|+.++..+.... ...      ........
T Consensus        97 ~I~~i~~~~~~~------~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~------~~~~~~p~  162 (386)
T 3v65_B           97 DIRQVLPHRSEY------TLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVV------STGLESPG  162 (386)
T ss_dssp             CEEEECTTSCCC------EEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEE------CSSCSCCC
T ss_pred             cceeeccCCCcE------EEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEE------eCCCCCcc
Confidence            567777766543      22232 234578999998666665544 4577888887765421 111      01123446


Q ss_pred             EEEEeeCCcEE-EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec-CC-CcEEEEEccCCcEEEEEe
Q 024868          117 CLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TD-GSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       117 ~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~  193 (261)
                      .+++++.+..| ++-...+.|.+.++..................++++|.+..|+.+. .. +.|..+++..... ..+.
T Consensus       163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~  241 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIA  241 (386)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE
T ss_pred             EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEE
Confidence            78899855444 4445667888888764433222222334678999999766555543 34 6788888764433 3332


Q ss_pred             ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE
Q 024868          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI  252 (261)
Q Consensus       194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  252 (261)
                      ...-.....++|+|++..+|    ++-...+.|..+|+..................+++
T Consensus       242 ~~~~~~PnGlavd~~~~~lY----~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav  296 (386)
T 3v65_B          242 DTHLFWPNGLTIDYAGRRMY----WVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  296 (386)
T ss_dssp             CSSCSCEEEEEEEGGGTEEE----EEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred             ECCCCCeeeEEEeCCCCEEE----EEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence            22222478999999887744    44556678999998753322222222234456666

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.81  E-value=3.9e-06  Score=70.96  Aligned_cols=118  Identities=15%  Similarity=0.114  Sum_probs=71.7

Q ss_pred             ceEEEEecCCCCC--C-CCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeC
Q 024868           19 VNLVVLGKSSRAS--S-SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYG   94 (261)
Q Consensus        19 ~~~~~~g~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~   94 (261)
                      ..+++.||.+...  + ....-.++.||+.+..+...+  . ....+.....++++.++++.++.|+. +..+.+||..+
T Consensus       198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~-~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t  274 (656)
T 1k3i_A          198 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--V-TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  274 (656)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--E-EECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc--c-cCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcC
Confidence            5677777654321  1 122336889999888763221  1 11223334556788899999999884 46799999876


Q ss_pred             CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cC-----CeEEEEEccCce
Q 024868           95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD-----GHLRIMHWPSLR  145 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-----~~i~~~d~~~~~  145 (261)
                      ..-  ..    ...+.....-.++...++++.++.|+ .+     ..+.+||..+.+
T Consensus       275 ~~W--~~----~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          275 DSW--IP----GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             TEE--EE----CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             Cce--eE----CCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            542  11    11222222223455667899999988 34     468999987654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=1.6e-05  Score=63.69  Aligned_cols=154  Identities=10%  Similarity=0.042  Sum_probs=92.1

Q ss_pred             eeEEEEEe-eCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-
Q 024868            7 VTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-   84 (261)
Q Consensus         7 v~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-   84 (261)
                      ...++|.| +  ..++.++-.. +        .|..+|+.+..+      .... ........++|++++++|+++... 
T Consensus       139 P~~lavdp~~--~g~Lyv~d~~-~--------~I~~id~~~~~v------~~~~-~~~~~P~~ia~d~~G~~lyvad~~~  200 (430)
T 3tc9_A          139 AVWLSFDPKN--HNHLYLVGEQ-H--------PTRLIDFEKEYV------STVY-SGLSKVRTICWTHEADSMIITNDQN  200 (430)
T ss_dssp             CCEEEEETTE--EEEEEEEEBT-E--------EEEEEETTTTEE------EEEE-CCCSCEEEEEECTTSSEEEEEECCS
T ss_pred             CCEEEECCCC--CCeEEEEeCC-C--------cEEEEECCCCEE------EEEe-cCCCCcceEEEeCCCCEEEEEeCCC
Confidence            35678875 3  2444444332 4        888999887664      2222 234568899999999977666542 


Q ss_pred             C----cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEee-ccccCCcee
Q 024868           85 G----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVL  158 (261)
Q Consensus        85 g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~  158 (261)
                      +    .+..++..........+    .   .......++++| ++.++++-..++.|..++...+..... .........
T Consensus       201 ~~~~~~v~~~~~~g~~~~~~~l----~---~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~  273 (430)
T 3tc9_A          201 NNDRPNNYILTRESGFKVITEL----T---KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEF  273 (430)
T ss_dssp             CTTSEEEEEEEGGGTSCSEEEE----E---ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCE
T ss_pred             CcccceEEEEeCCCceeeeeee----c---cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcce
Confidence            2    23333322211100111    1   123356788999 677666666778899999876654211 122223468


Q ss_pred             EEEEcCCCCEEE-EecCCCcEEEEEccC
Q 024868          159 DMDFSLDSEFLA-TTSTDGSARIWKTED  185 (261)
Q Consensus       159 ~~~~s~~~~~l~-~~~~d~~i~iwd~~~  185 (261)
                      .++|+|+|++|+ +-...+.|..++...
T Consensus       274 gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          274 HIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             eEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            899999999554 445678899988763

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.78  E-value=1.1e-05  Score=61.94  Aligned_cols=206  Identities=6%  Similarity=-0.078  Sum_probs=119.9

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEecC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d   84 (261)
                      .+..++|.+.  .+.+..+-...+        .|+.+++++...   .  ...+...-..+..+++.+.+..|+ +-...
T Consensus        36 ~~~~ld~d~~--~~~lyw~D~~~~--------~I~r~~~~g~~~---~--~~~~~~~l~~p~glavd~~~g~ly~~d~~~  100 (318)
T 3sov_A           36 DAAAVDFVFS--HGLIYWSDVSEE--------AIKRTEFNKTES---V--QNVVVSGLLSPDGLACDWLGEKLYWTDSET  100 (318)
T ss_dssp             EEEEEEEEGG--GTEEEEEETTTT--------EEEEEETTSSSC---C--CEEEEECCSCCCEEEEETTTTEEEEEETTT
T ss_pred             ccEEEEEEeC--CCEEEEEECCCC--------cEEEEEccCCCc---e--EEEEcCCCCCccEEEEEcCCCeEEEEECCC
Confidence            3456777764  245555555555        788888766531   0  111222234567899987555554 44456


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      +.|.+++++.... ..+.      .........++++|.+..|+.+.  ..+.|...++............-.....+++
T Consensus       101 ~~I~~~~~dG~~~-~~l~------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglav  173 (318)
T 3sov_A          101 NRIEVSNLDGSLR-KVLF------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTL  173 (318)
T ss_dssp             TEEEEEETTSCSC-EEEE------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             CEEEEEECCCCcE-EEEE------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEE
Confidence            7888888865432 1111      02234568999999765655554  3577888887532221111222235689999


Q ss_pred             cCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       163 s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      +|++..|+.+ +..+.|..+|+..... ..+..........+++..  ..+    ..+....+.|..+|..+++....+
T Consensus       174 d~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~--~~l----ywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          174 DYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFE--DIL----YWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEET--TEE----EEEETTTTEEEEEETTTCCSCEEE
T ss_pred             eccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeC--CEE----EEEecCCCeEEEEECCCCCceEEE
Confidence            9976666554 4568899999864333 333221222467787753  332    244556788999998777654433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.78  E-value=2.3e-05  Score=60.04  Aligned_cols=208  Identities=11%  Similarity=-0.062  Sum_probs=118.0

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecCC
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNG   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg   85 (261)
                      +..++|.+.  ...+.++-...+        .|+.++.++.......  ...+...-..+..+++.+.+..|+.+ ...+
T Consensus        32 p~g~~~d~~--~~~ly~~D~~~~--------~I~~~~~~g~~~~~~~--~~~~~~~~~~p~glavd~~~~~ly~~d~~~~   99 (316)
T 1ijq_A           32 VVALDTEVA--SNRIYWSDLSQR--------MICSTQLDRAHGVSSY--DTVISRDIQAPDGLAVDWIHSNIYWTDSVLG   99 (316)
T ss_dssp             EEEEEEETT--TTEEEEEETTTT--------EEEEEEC--------C--EEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             eEEEEEEeC--CCEEEEEECCCC--------cEEEEECCCCCCCccc--EEEEeCCCCCcCEEEEeecCCeEEEEECCCC
Confidence            456777664  245555555556        7888887652100000  11232223456789998755555444 4567


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-C-CeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D-GHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      .|.+++...... ..+..      ........++++|.+..|+.+.. . +.|...++............-.....++++
T Consensus       100 ~I~~~~~~g~~~-~~~~~------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d  172 (316)
T 1ijq_A          100 TVSVADTKGVKR-KTLFR------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD  172 (316)
T ss_dssp             EEEEEETTSSSE-EEEEE------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEE
T ss_pred             EEEEEeCCCCce-EEEEE------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEe
Confidence            899988765432 11111      12246789999996665555543 2 678888875332211111223457899999


Q ss_pred             CCCCEEEEe-cCCCcEEEEEccCCcEEEEEeec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          164 LDSEFLATT-STDGSARIWKTEDGVAWTFLTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       164 ~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      |++..|+.+ +..+.|..+|+.... .+.+...  .......+++. .+ .+    ..+....+.|..+|..+++.+..+
T Consensus       173 ~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~-~l----y~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          173 LLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-ED-KV----FWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TT-EE----EEEETTTTEEEEEETTTCCCCEEE
T ss_pred             ccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CC-EE----EEEECCCCeEEEEeCCCCcceEEE
Confidence            977666554 456789999987433 2333221  12236778884 33 32    245566788999998777654443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.77  E-value=3.1e-06  Score=70.43  Aligned_cols=183  Identities=9%  Similarity=-0.020  Sum_probs=109.4

Q ss_pred             EEEECCCCCeEEEEecC----------------CcEEEEEEeCCccccceeeeeCCC--CCC-CCCeEEEEEe-eCC---
Q 024868           68 TIAVNPSGDDFVCSTTN----------------GGCKLFEVYGGATDINLLAKKMPP--LQD-AGPQKCLSFS-VDG---  124 (261)
Q Consensus        68 ~~~~~~~~~~l~~~~~d----------------g~i~i~~~~~~~~~~~~~~~~~~~--~~~-~~~v~~~~~s-~~~---  124 (261)
                      .+++.++...++.+..+                +.|.-+|..+++............  +.. ..++. +... .+|   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            34566666677766554                368888888877543321110000  000 11222 2222 467   


Q ss_pred             cEEEEeccCCeEEEEEccCceEEeeccccC------------C-ce--------------------------eEEEEcCC
Q 024868          125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAH------------K-SV--------------------------LDMDFSLD  165 (261)
Q Consensus       125 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------~-~v--------------------------~~~~~s~~  165 (261)
                      +.++.++.+|.++++|.++++.+.......            + ++                          ..++++|+
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            467778899999999999998776443111            0 11                          24567776


Q ss_pred             CCEEEEe---------------------------------c------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEe
Q 024868          166 SEFLATT---------------------------------S------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (261)
Q Consensus       166 ~~~l~~~---------------------------------~------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  206 (261)
                      ..++++.                                 +      .+|.+.-||+.+++.+.+.....  +...-...
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~  481 (599)
T 1w6s_A          404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMA  481 (599)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEE
T ss_pred             CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceE
Confidence            6655442                                 1      34789999999999887775432  12221233


Q ss_pred             cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcC-eeEEEEeeCCCE
Q 024868          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKY  258 (261)
Q Consensus       207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~dg~~  258 (261)
                      ..+..     ++.++.|+.++.||.++|+.+..+...... ..-+.+..||+.
T Consensus       482 tagg~-----vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          482 TAGDL-----VFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             ETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ecCCE-----EEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            35555     455788999999999999998776644322 233666778874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.75  E-value=2.4e-06  Score=65.22  Aligned_cols=181  Identities=13%  Similarity=0.039  Sum_probs=106.3

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--CeEEEEEc
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMHW  141 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--~~i~~~d~  141 (261)
                      .....++|+++++.+++-..++.|..||..+...  ...       ........++++++|+++++....  ..|..+|.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~--~~~-------~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHA-------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EEE-------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE--EEE-------eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence            4578999999998666655678888887654321  111       112457889999999866554332  24777777


Q ss_pred             cCceEEeecc-ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE-EEEEee--------cCCCceEEEEEecCCCc
Q 024868          142 PSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTR--------NSDEKIELCRFSKDGTK  211 (261)
Q Consensus       142 ~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~--------~~~~~v~~~~~~p~~~~  211 (261)
                      .+++...... ........++..+++..+++-..++.|+.+|..+++. +.....        ..-.....+  +|+++.
T Consensus       103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            7766432111 1112334555556665556555688899999876532 211110        011124555  899886


Q ss_pred             ceEEEEEeeCCCcEEEEEECCC-CeE--EeeeeccCcCeeEEEEeeCCCEEe
Q 024868          212 PFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~-~~~--~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +|    ++....+.|+.||+.. ++.  ...+.. ......++++++|++.+
T Consensus       181 ly----v~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~v  227 (306)
T 2p4o_A          181 LY----VSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYG  227 (306)
T ss_dssp             EE----EEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEE
T ss_pred             EE----EEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEE
Confidence            43    5556678999999874 321  111111 13456788888887543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.75  E-value=4.7e-06  Score=65.45  Aligned_cols=191  Identities=12%  Similarity=0.103  Sum_probs=110.8

Q ss_pred             EEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc
Q 024868           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN  100 (261)
Q Consensus        21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  100 (261)
                      .+.+++.++        .++.+|..+++...    ...+..  ........  .+..+++++.++.++.+|..+++....
T Consensus       105 ~v~v~~~~g--------~l~a~d~~tG~~~W----~~~~~~--~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~  168 (376)
T 3q7m_A          105 HVYIGSEKA--------QVYALNTSDGTVAW----QTKVAG--EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWT  168 (376)
T ss_dssp             EEEEEETTS--------EEEEEETTTCCEEE----EEECSS--CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEEEEcCCC--------EEEEEECCCCCEEE----EEeCCC--ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            455566666        88999988776421    112221  11111112  244677788899999999988775333


Q ss_pred             eeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCc----ee---EEEEcC--CCCEEEE
Q 024868          101 LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS----VL---DMDFSL--DSEFLAT  171 (261)
Q Consensus       101 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----v~---~~~~s~--~~~~l~~  171 (261)
                      ..... ..... .........  +..++++..++.+..+|..+++.+.........    +.   .+.-.|  .+..++.
T Consensus       169 ~~~~~-~~~~~-~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~  244 (376)
T 3q7m_A          169 VNLDM-PSLSL-RGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA  244 (376)
T ss_dssp             EECCC-------CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE
T ss_pred             EeCCC-Cceee-cCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE
Confidence            21110 00000 000111122  346777878999999999999887655422110    00   011122  3456777


Q ss_pred             ecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       172 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      ++.++.+..+|.++|+.+.....  . ....+..  ++..     +..+..++.+..+|.++++.+....
T Consensus       245 ~~~~g~l~~~d~~tG~~~w~~~~--~-~~~~~~~--~~~~-----l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          245 LAYNGNLTALDLRSGQIMWKREL--G-SVNDFIV--DGNR-----IYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECC--C-CEEEEEE--ETTE-----EEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             EecCcEEEEEECCCCcEEeeccC--C-CCCCceE--ECCE-----EEEEcCCCeEEEEECCCCcEEEeec
Confidence            78899999999999998766542  2 2444443  3444     3555667889999999998765544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.74  E-value=2.3e-05  Score=62.81  Aligned_cols=223  Identities=10%  Similarity=-0.014  Sum_probs=123.5

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-   85 (261)
                      ...++|.|+....++.++-.. +        .|+.+++.++.+      . .+......+..++++++|+ |+.+...+ 
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~-~--------~I~~id~~~g~v------~-~~~~~~~~P~giavd~dG~-lyVad~~~~  203 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR-D--------AFRHVDFVNQYV------D-IKTTNIGQCADVNFTLNGD-MVVVDDQSS  203 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT-S--------CEEEEETTTTEE------E-EECCCCSCEEEEEECTTCC-EEEEECCSC
T ss_pred             CceEEEccccCCCEEEEEeCC-C--------CEEEEECCCCEE------E-EeecCCCCccEEEECCCCC-EEEEcCCCC
Confidence            456778763112444444332 4        788888876664      2 2222345688999999999 54444321 


Q ss_pred             ---c-EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeeccc--cCCcee
Q 024868           86 ---G-CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVL  158 (261)
Q Consensus        86 ---~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~v~  158 (261)
                         . +...+..........       +........++++| ++.++++-..++.|+.+|..++.....+..  ....-.
T Consensus       204 ~~~~gv~~~~~~~~~~~~~~-------~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~  276 (433)
T 4hw6_A          204 DTNTGIYLFTRASGFTERLS-------LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNF  276 (433)
T ss_dssp             TTSEEEEEECGGGTTCCEEE-------EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCE
T ss_pred             cccceEEEEECCCCeecccc-------ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcc
Confidence               1 222222211110000       11123456788999 666665655678899999876654222211  112235


Q ss_pred             EEEEcCCCCEEE-EecCCCcEEEEEcc--CCcE--EEEEeecC--------------CCceEEEEE---------ecCCC
Q 024868          159 DMDFSLDSEFLA-TTSTDGSARIWKTE--DGVA--WTFLTRNS--------------DEKIELCRF---------SKDGT  210 (261)
Q Consensus       159 ~~~~s~~~~~l~-~~~~d~~i~iwd~~--~~~~--~~~~~~~~--------------~~~v~~~~~---------~p~~~  210 (261)
                      .++|+|+++.|+ +-...+.|+.++..  +++.  ...+.+..              -.....+++         .++|.
T Consensus       277 ~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~  356 (433)
T 4hw6_A          277 HIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD  356 (433)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc
Confidence            799999998555 44556889998865  2321  12222210              013667888         56665


Q ss_pred             cceEEEEEeeCCCcEEEEEECCCCeEEeeeecc------------------CcCeeEEEEe-eCCCEEe
Q 024868          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------------------RKPASVLSIS-LDGKYLA  260 (261)
Q Consensus       211 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~------------------~~~v~~~~~s-~dg~~la  260 (261)
                      .     .++-...+.|+.++. ++... .+.+.                  -.....++++ ++|.+++
T Consensus       357 l-----yvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyV  418 (433)
T 4hw6_A          357 F-----YFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYI  418 (433)
T ss_dssp             E-----EEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEE
T ss_pred             E-----EEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEE
Confidence            4     355566778999985 55433 22211                  0236789999 6666543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.73  E-value=4e-05  Score=60.73  Aligned_cols=223  Identities=11%  Similarity=-0.061  Sum_probs=123.5

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ec
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT   83 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~   83 (261)
                      ..+..++|.+..  ..+..+-...+        .|+.+++++.....  ............+..+++.+.+..|+.+ ..
T Consensus       112 ~~~~~l~~d~~~--~~lywsD~~~~--------~I~~~~~~g~~~~~--~~~~~~~~~~~~p~glavD~~~~~lY~~d~~  179 (400)
T 3p5b_L          112 RNVVALDTEVAS--NRIYWSDLSQR--------MICSTQLDRAHGVS--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSV  179 (400)
T ss_dssp             SCEEEEEEETTT--TEEEEEETTTT--------EEEEEEC------C--CCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CcceEEeeeecc--CceEEEecCCC--------eEEEEEcccCCCCC--cceEEEeCCCCCcccEEEEecCCceEEEECC
Confidence            345667776642  44445544455        67777765422100  0122233334567889998855555444 45


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  161 (261)
                      .+.|.+.+++.... ..+..      ........++++|.+..|+...  ..+.|...++............-.....++
T Consensus       180 ~~~I~~~~~~g~~~-~~l~~------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~gla  252 (400)
T 3p5b_L          180 LGTVSVADTKGVKR-KTLFR------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  252 (400)
T ss_dssp             TTEEEEECTTTCSE-EEEEE------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             CCeEEEEeCCCCce-EEEEe------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEE
Confidence            67788888765542 11111      1234578999999666665553  246788888764333222222234678999


Q ss_pred             EcCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          162 FSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       162 ~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      ++|++..|+.+ ...+.|..+|+............ .-....++++  ++..+|    .+....+.|..+|..+|+.+..
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~ly----wtd~~~~~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVF----WTDIINEAIFSANRLTGSDVNL  326 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEE----EEESSSCSEEEEESSSCCCCEE
T ss_pred             EEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEE----EecCCCCeEEEEEcCCCCceEE
Confidence            99877766665 45678999998654433333221 1123556766  334432    4445667899999777766554


Q ss_pred             eeccCcCeeEEEE
Q 024868          240 KRLLRKPASVLSI  252 (261)
Q Consensus       240 ~~~~~~~v~~~~~  252 (261)
                      +.........+++
T Consensus       327 i~~~~~~p~~i~v  339 (400)
T 3p5b_L          327 LAENLLSPEDMVL  339 (400)
T ss_dssp             EECSCSCEEEEEE
T ss_pred             EecCCCCCceEEE
Confidence            4433333444443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=5.8e-07  Score=72.01  Aligned_cols=155  Identities=6%  Similarity=0.078  Sum_probs=97.0

Q ss_pred             CceEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-CC----eEEE
Q 024868           65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG----HLRI  138 (261)
Q Consensus        65 ~v~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~----~i~~  138 (261)
                      ....++++| ++..|.++...+.|+.+|..++... .+       .........++|++++++|+++.. ++    .+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~-------~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~  209 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TV-------YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI  209 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EE-------ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EE-------ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence            467899998 4556666655577888887665421 11       113356789999999996666643 11    2343


Q ss_pred             EEccCceEE-eeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEE
Q 024868          139 MHWPSLRII-LDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (261)
Q Consensus       139 ~d~~~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~  216 (261)
                      ++ ..+... ............++++| +|.++++-..++.|+.++..++..............+.++|+|+|+++|   
T Consensus       210 ~~-~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly---  285 (430)
T 3tc9_A          210 LT-RESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY---  285 (430)
T ss_dssp             EE-GGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE---
T ss_pred             Ee-CCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE---
Confidence            44 333211 01111223457788999 6776667667789999999876643333322223478999999999643   


Q ss_pred             EEeeCCCcEEEEEECC
Q 024868          217 TVQRGDKALLAVYDIS  232 (261)
Q Consensus       217 ~~~~~~d~~i~~~d~~  232 (261)
                       ++....+.|..++..
T Consensus       286 -v~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          286 -IVVVNQHYILRSDYD  300 (430)
T ss_dssp             -EEETTTTEEEEEEEE
T ss_pred             -EEECCCCEEEEEeCC
Confidence             455667789998765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.72  E-value=2.5e-05  Score=59.88  Aligned_cols=210  Identities=13%  Similarity=0.207  Sum_probs=123.2

Q ss_pred             EEE-eeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC----CCe--E-EEEe
Q 024868           11 SWI-KRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----GDD--F-VCST   82 (261)
Q Consensus        11 ~~~-~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l-~~~~   82 (261)
                      -|. |......+++.....+        -+..||.....+       ..++.  +.++.+..-|+    |+.  + ++..
T Consensus        31 vw~~~~dp~~s~ii~t~k~~--------gL~Vydl~G~~l-------~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~   93 (355)
T 3amr_A           31 IWLDPKTPQNSKLITTNKKS--------GLVVYSLDGKML-------HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASN   93 (355)
T ss_dssp             EECCSSCGGGCEEEEEETTT--------EEEEEETTSCEE-------EEECC--SCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EecCCCCCCccEEEEEcCCC--------CEEEEcCCCcEE-------EEccC--CCcccEEEecccccCCceEeEEEEeC
Confidence            353 4322345555555555        788999965553       23332  55677776653    222  3 3333


Q ss_pred             c---CCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEE--eeC-Cc-EEEEeccCCeEEEEEcc-------CceEE
Q 024868           83 T---NGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSF--SVD-GS-RFAAGGVDGHLRIMHWP-------SLRII  147 (261)
Q Consensus        83 ~---dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~--s~~-~~-~l~~~~~d~~i~~~d~~-------~~~~~  147 (261)
                      .   +++|.+|++................+ .....+..+++  +|. ++ ++++...+|.+..|++.       +.+.+
T Consensus        94 R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV  173 (355)
T 3amr_A           94 RSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV  173 (355)
T ss_dssp             CSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE
T ss_pred             CCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE
Confidence            3   47899999953322111111000011 11145666777  664 44 57777788999999883       22333


Q ss_pred             eeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEcc-----CCcEEEEEe-ecCCCceEEEEE--ecCCCcceEEEEEe
Q 024868          148 LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-----DGVAWTFLT-RNSDEKIELCRF--SKDGTKPFLFCTVQ  219 (261)
Q Consensus       148 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~-~~~~~~v~~~~~--~p~~~~~~~~~~~~  219 (261)
                      +.+ ...+.+..+...+....|+.+-.+..|..++.+     +++.+..+. .+....+..+++  .++++. |+  +++
T Consensus       174 R~f-~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~g-yL--ivS  249 (355)
T 3amr_A          174 RAF-KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKG-YL--MAS  249 (355)
T ss_dssp             EEE-ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCE-EE--EEE
T ss_pred             EEe-cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCE-EE--EEE
Confidence            333 334578899999988889999888767777754     344554442 222234788888  456662 22  466


Q ss_pred             eCCCcEEEEEECC-CCeEEeeee
Q 024868          220 RGDKALLAVYDIS-TWNKIGHKR  241 (261)
Q Consensus       220 ~~~d~~i~~~d~~-~~~~~~~~~  241 (261)
                      +..++++.+||.+ +.+.+..+.
T Consensus       250 sQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          250 SQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EGGGTEEEEEESSTTCCEEEEEE
T ss_pred             cCCCCEEEEEECCCCCcEEEEEE
Confidence            6677899999996 566665554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.67  E-value=1.3e-05  Score=67.93  Aligned_cols=157  Identities=16%  Similarity=0.189  Sum_probs=99.8

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCC-CCCC-CCCeEEEEEeeCCcEEEEecc------CCeEEEEEccCceE
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQD-AGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRI  146 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~  146 (261)
                      +..+++++.|+.|+.+|..+++...+....... .... ..++    . .++ .++++..      ++.|+.+|.++++.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR----V-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKL  190 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE----E-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence            557888888999999999988764443211000 0000 1111    1 144 4555432      58999999999998


Q ss_pred             EeeccccC-C------------------------------ceeEEEEcCCCCEEEEecCCC-------------------
Q 024868          147 ILDEPKAH-K------------------------------SVLDMDFSLDSEFLATTSTDG-------------------  176 (261)
Q Consensus       147 ~~~~~~~~-~------------------------------~v~~~~~s~~~~~l~~~~~d~-------------------  176 (261)
                      +....... .                              ....++++|+...++.++.++                   
T Consensus       191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~  270 (668)
T 1kv9_A          191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (668)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            77654210 0                              112468888888888887665                   


Q ss_pred             cEEEEEccCCcEEEEEeecC-C-------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          177 SARIWKTEDGVAWTFLTRNS-D-------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~-~-------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      .|..+|.++|+.+..++... .       .+.....+..+|+..  -.++.++.+|.++++|.++|+.+..
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~--~~v~~~~~~G~l~~lD~~tG~~l~~  339 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR--KVLMQAPKNGFFYVLDRTNGKLISA  339 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE--EEEEEECCCCEEEEEECCCCCEecc
Confidence            39999999999988876431 1       122223334467521  0157788999999999999998743

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.66  E-value=7.5e-05  Score=59.20  Aligned_cols=180  Identities=8%  Similarity=-0.015  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCcc---ccceeeeeCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGAT---DINLLAKKMPPLQDAG  113 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~---~~~~~~~~~~~~~~~~  113 (261)
                      .|..++.+....      .... .....+..++|++....|..+. ..+.|+.+++.....   .....      .....
T Consensus        93 ~I~~i~l~~~~~------~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~------~~~~~  159 (400)
T 3p5b_L           93 EVRKMTLDRSEY------TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI------SRDIQ  159 (400)
T ss_dssp             EEEEECTTSCSC------EEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE------CSSCS
T ss_pred             eeEEEccCCcce------eEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE------eCCCC
Confidence            677777766543      2222 2345788999998766665554 457788888765321   01111      11234


Q ss_pred             CeEEEEEeeC-CcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CCCcEEEEEccCCcEEE
Q 024868          114 PQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWT  190 (261)
Q Consensus       114 ~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~  190 (261)
                      ....+++.+. ++++++-...+.|.+.+++.................++++|.+.+|+...  ..+.|...++.......
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence            5788999984 44445555678899999865543333323334578999999666555543  24788888886443333


Q ss_pred             EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       191 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      ...... .....++++|++..+|    .+-...+.|..+|+....
T Consensus       240 ~~~~~l-~~P~glavd~~~~~lY----~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          240 LVTENI-QWPNGITLDLLSGRLY----WVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             EECSSC-SCEEEEEEETTTTEEE----EEETTTTEEEEEETTSCC
T ss_pred             EEECCC-CceEEEEEEeCCCEEE----EEECCCCEEEEEeCCCCc
Confidence            333222 3588999999888744    344556789999987543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.65  E-value=6.2e-05  Score=57.68  Aligned_cols=178  Identities=8%  Similarity=-0.020  Sum_probs=106.8

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCC---ccccceeeeeCCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGG---ATDINLLAKKMPPLQDAG  113 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~---~~~~~~~~~~~~~~~~~~  113 (261)
                      .|..+|..+...      ...+. ....+..++|+++++.|+.+. ..+.|+.+++.+.   .......    .  ....
T Consensus        11 ~I~~i~~~~~~~------~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~----~--~~~~   77 (316)
T 1ijq_A           11 EVRKMTLDRSEY------TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----S--RDIQ   77 (316)
T ss_dssp             SEEEEETTSCCC------EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE----C--SSCS
T ss_pred             eEEEEECCCcce------Eehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE----e--CCCC
Confidence            467777766543      22222 235678999998766665554 4578988988762   1111111    0  1123


Q ss_pred             CeEEEEEeeCCcEE-EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-C-CcEEEEEccCCcEEE
Q 024868          114 PQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D-GSARIWKTEDGVAWT  190 (261)
Q Consensus       114 ~v~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-~~i~iwd~~~~~~~~  190 (261)
                      ....+++++.+..| ++-...+.|.+++...................++++|.+..|+.+.. . +.|...++. |+...
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~  156 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIY  156 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeE
Confidence            45789998755444 44456788999997644332222222346789999996665554443 2 678888875 44333


Q ss_pred             EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       191 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      .+....-.....++++|++..+|    .+-...+.|..+|+..
T Consensus       157 ~~~~~~~~~P~gla~d~~~~~lY----~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLSGRLY----WVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEE----EEETTTTEEEEEETTS
T ss_pred             EEEECCCCCceEEEEeccCCEEE----EEECCCCeEEEEecCC
Confidence            33222223578999999888743    4455667899999874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.63  E-value=4.7e-05  Score=58.38  Aligned_cols=200  Identities=9%  Similarity=-0.044  Sum_probs=114.1

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      .|..+++++.....    ...+.+ ...+..++|.+....|... ...+.|+.++..+..........      ......
T Consensus        14 ~I~~i~l~~~~~~~----~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~------~l~~p~   82 (318)
T 3sov_A           14 DLRLVDATNGKENA----TIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS------GLLSPD   82 (318)
T ss_dssp             EEEEEETTCTTSCC----EEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE------CCSCCC
T ss_pred             eEEEEECCCCceEE----EEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC------CCCCcc
Confidence            67778877653100    111211 1346789999865555544 44677888887765321111111      123457


Q ss_pred             EEEEeeCC-cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CCCcEEEEEccCCcEEEEEe
Q 024868          117 CLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       117 ~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~  193 (261)
                      .+++.+.+ +++++-...+.|.++++..................+++.|.+..|+.+.  ..+.|...++.... ...+.
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~  161 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIII  161 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEE
Confidence            79999754 4445545677899999764433222223334678999999766555544  35778888876433 23332


Q ss_pred             ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (261)
Q Consensus       194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  253 (261)
                      ...-.....++++|++..+|    .+-...+.|..+|+..................+++.
T Consensus       162 ~~~l~~Pnglavd~~~~~lY----~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~  217 (318)
T 3sov_A          162 NSEIYWPNGLTLDYEEQKLY----WADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF  217 (318)
T ss_dssp             CSSCSCEEEEEEETTTTEEE----EEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred             ECCCCCccEEEEeccCCEEE----EEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence            22223478999999887743    445567789999987433221122122334555554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.63  E-value=0.00012  Score=63.36  Aligned_cols=187  Identities=9%  Similarity=0.049  Sum_probs=114.3

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~  142 (261)
                      ...|.++...++|...+ |+.+| |.+|+..+...............-....|.++...++|.+- .|+.++-|..++..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCC
Confidence            35689999998887554 44555 88888765542110000000011123579999999888754 45566668888876


Q ss_pred             CceEEeecc-c-----cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec-------CCCceEEEEEecCC
Q 024868          143 SLRIILDEP-K-----AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-------SDEKIELCRFSKDG  209 (261)
Q Consensus       143 ~~~~~~~~~-~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~p~~  209 (261)
                      +........ .     ....|.++...++|++. .|+.++-+..||..+++........       ....|.++...++|
T Consensus       339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  417 (795)
T 4a2l_A          339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK  417 (795)
T ss_dssp             GGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred             cccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence            544221111 0     12358999888888744 4666777999998876644322111       12358899888888


Q ss_pred             C-cceEEEEEeeCCCcEEEEEECCCCeEEeeee----ccCcCeeEEEEeeCCCEE
Q 024868          210 T-KPFLFCTVQRGDKALLAVYDISTWNKIGHKR----LLRKPASVLSISLDGKYL  259 (261)
Q Consensus       210 ~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l  259 (261)
                      + .      ..+..++-|..||.++++......    .....|.++...++|+..
T Consensus       418 ~~l------Wigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lw  466 (795)
T 4a2l_A          418 SLV------YIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLW  466 (795)
T ss_dssp             TEE------EEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEE
T ss_pred             CEE------EEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEE
Confidence            8 4      334455569999998776432211    123568888888888754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.59  E-value=0.00015  Score=62.78  Aligned_cols=186  Identities=13%  Similarity=0.102  Sum_probs=115.4

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~  143 (261)
                      ..|.++...++|... .|+.++-|..|+.................+ ....|.++...++|++- +|+.++-|..|+..+
T Consensus       310 ~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l-~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSL-SDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPIT  386 (795)
T ss_dssp             SCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSC-SCSSEEEEEECTTSCEE-EEESSSCEEEECTTT
T ss_pred             CcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCC-CCCeeEEEEECCCCCEE-EEECCCCeEEEcCCC
Confidence            569999999988744 556655588888655432110000000011 23568899888888644 455666699999876


Q ss_pred             ceEEeeccc--------cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee---cCCCceEEEEEecCCCcc
Q 024868          144 LRIILDEPK--------AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       144 ~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~  212 (261)
                      +........        ....|.++...++|+.|..|+.++.+..||..+++.......   .....|.++...++|+. 
T Consensus       387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-  465 (795)
T 4a2l_A          387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL-  465 (795)
T ss_dssp             CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE-
T ss_pred             CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE-
Confidence            654322111        124688999888888566666767799999888765432210   11235889988888875 


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeeee------ccCcCeeEEEEeeCCCEE
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHKR------LLRKPASVLSISLDGKYL  259 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~------~~~~~v~~~~~s~dg~~l  259 (261)
                           ..+..+| +.+||..+++......      .....|.++...++|+..
T Consensus       466 -----wigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW  512 (795)
T 4a2l_A          466 -----WLGTLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW  512 (795)
T ss_dssp             -----EEEESSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred             -----EEEecCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE
Confidence                 2233344 8899988776432211      123568888888888754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.57  E-value=6.2e-06  Score=66.09  Aligned_cols=156  Identities=9%  Similarity=0.060  Sum_probs=93.3

Q ss_pred             CceEEEECCC--CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC---Ce-EEE
Q 024868           65 DPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GH-LRI  138 (261)
Q Consensus        65 ~v~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~-i~~  138 (261)
                      ....++|+|+  ...|+.+...+.|+.++..++....        ..........++++++|+++++-...   .. +..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~--------~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI--------KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE--------ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE--------eecCCCCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence            4678999984  4456555554788888886655311        11123567899999999944443211   12 333


Q ss_pred             EEccCceEEeeccccCCceeEEEEcC-CCCEEEEecCCCcEEEEEccCCcEEEEEe-ecCCCceEEEEEecCCCcceEEE
Q 024868          139 MHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFC  216 (261)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~  216 (261)
                      .+...+...............++++| +|.++++-..++.|+.+|..+++....+. .........++|+|+|+++|   
T Consensus       212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY---  288 (433)
T 4hw6_A          212 FTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY---  288 (433)
T ss_dssp             ECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE---
T ss_pred             EECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE---
Confidence            33221111001111223457788999 67666666677889999988777633332 22222245799999999643   


Q ss_pred             EEeeCCCcEEEEEECC
Q 024868          217 TVQRGDKALLAVYDIS  232 (261)
Q Consensus       217 ~~~~~~d~~i~~~d~~  232 (261)
                       ++-...+.|+.++..
T Consensus       289 -vad~~~~~I~~~~~d  303 (433)
T 4hw6_A          289 -IIYNGKHCIYRVDYN  303 (433)
T ss_dssp             -EEETTTTEEEEEEBC
T ss_pred             -EEeCCCCEEEEEeCC
Confidence             455667789998865

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.51  E-value=4.3e-05  Score=63.69  Aligned_cols=165  Identities=10%  Similarity=0.057  Sum_probs=99.8

Q ss_pred             EEECCCCCe----EEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE-EEEEeeCCcEEEEec------cCCeEE
Q 024868           69 IAVNPSGDD----FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGG------VDGHLR  137 (261)
Q Consensus        69 ~~~~~~~~~----l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~------~d~~i~  137 (261)
                      ++++|.+..    ++.++.|+.|+-+|..+++...+......   .....+. .... .++ .+++++      .++.|+
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~---~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~  185 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDI---KVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLT  185 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCG---GGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCC---CccceeecCCEE-ECC-EEEEEecccccCCCCeEE
Confidence            455444444    77888899999999988876443221110   0000111 1111 144 445544      378999


Q ss_pred             EEEccCceEEeeccccCCc-------------------------------------e-eEEEEcCCCCEEEEecCC----
Q 024868          138 IMHWPSLRIILDEPKAHKS-------------------------------------V-LDMDFSLDSEFLATTSTD----  175 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~s~~~~~l~~~~~d----  175 (261)
                      -+|.++++.+.+.......                                     + ..+++.++...++.++.+    
T Consensus       186 A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~  265 (599)
T 1w6s_A          186 AYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPW  265 (599)
T ss_dssp             EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred             EEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccc
Confidence            9999999987665432211                                     0 134566777777776654    


Q ss_pred             ------------CcEEEEEccCCcEEEEEeecCC---------CceEEEEEe-cCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          176 ------------GSARIWKTEDGVAWTFLTRNSD---------EKIELCRFS-KDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       176 ------------~~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~~-p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                                  +.|.-+|.++|+.+..++....         .++. +... .+|+..-  .++.++.+|.++++|.++
T Consensus       266 ~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~--~v~~~~~~G~l~~lD~~t  342 (599)
T 1w6s_A          266 NETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK--LLTHPDRNGIVYTLDRTD  342 (599)
T ss_dssp             CGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE--EEEEECTTSEEEEEETTT
T ss_pred             cCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE--EEEEECCCcEEEEEECCC
Confidence                        3799999999999888765322         1111 2222 4674211  146688999999999999


Q ss_pred             CeEEeeee
Q 024868          234 WNKIGHKR  241 (261)
Q Consensus       234 ~~~~~~~~  241 (261)
                      |+.+....
T Consensus       343 G~~lw~~~  350 (599)
T 1w6s_A          343 GALVSANK  350 (599)
T ss_dssp             CCEEEEEE
T ss_pred             CCEeeccc
Confidence            99875543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.50  E-value=0.00027  Score=60.79  Aligned_cols=165  Identities=7%  Similarity=-0.096  Sum_probs=98.9

Q ss_pred             CCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEE
Q 024868           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMH  140 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d  140 (261)
                      ...+..++|.+....|+.+. ..+.|+.+++.......... ...  .........|++.+.++.|+.+ ...+.|.+.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~-~vi--~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-TVI--SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE-EEE--CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCccee-EEE--ecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence            45678999998655555444 45778888886532100000 000  0123456789999877555544 4678899999


Q ss_pred             ccCceEEeeccccCCceeEEEEcCCCCEEEEec-C-CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEE
Q 024868          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-T-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~  218 (261)
                      +..................|+++|.+.+|+.+. . .+.|...++..... ..+....-.....+++++.+..+|    +
T Consensus       500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LY----w  574 (791)
T 3m0c_C          500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLY----W  574 (791)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEE----E
T ss_pred             CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCCeEE----E
Confidence            865443222222334678999999766565543 2 36788888864443 333322223588999998887744    3


Q ss_pred             eeCCCcEEEEEECCCCe
Q 024868          219 QRGDKALLAVYDISTWN  235 (261)
Q Consensus       219 ~~~~d~~i~~~d~~~~~  235 (261)
                      +-...+.|..+|+....
T Consensus       575 aD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EETTTTEEEEEETTSCS
T ss_pred             EeCCCCcEEEEecCCCc
Confidence            34556789999986543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.49  E-value=0.00037  Score=60.01  Aligned_cols=210  Identities=11%  Similarity=-0.050  Sum_probs=116.7

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCC
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNG   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg   85 (261)
                      +..++|.+.  ...++++-...+        .|+.++.++.....  .....+......+..|++.+.++.|+.+. ..+
T Consensus       426 ~~gl~~d~~--~~~lY~sD~~~~--------~I~~~~l~g~~~~~--~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~  493 (791)
T 3m0c_C          426 VVALDTEVA--SNRIYWSDLSQR--------MICSTQLDRAHGVS--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG  493 (791)
T ss_dssp             EEEEEEETT--TTEEEEEETTTT--------EEEEEEC----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             eEEEeeccc--CCeeEEeeccce--------eEEEEeccCCCCCc--ceeEEEecCCCCcceeeeeecCCcEEEEecCCC
Confidence            344555542  234444444444        66666665421100  11223333445677899988776665544 457


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      .|.+.++..... ..+..      ........|+++|.+..|+.+.  ..+.|...++............-.....|+++
T Consensus       494 ~I~v~~ldG~~~-~~l~~------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD  566 (791)
T 3m0c_C          494 TVSVADTKGVKR-KTLFR------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD  566 (791)
T ss_dssp             EEEEEETTSSSE-EEEEE------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEE
T ss_pred             eEEEEeCCCCeE-EEEEe------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEe
Confidence            888888875442 11111      1224578999999765665553  23678888876444322222233467899999


Q ss_pred             CCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          164 LDSEFLATT-STDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       164 ~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      +.+..|+.+ ...+.|..+++........+.... -....++++.  +.++|    .+-...+.|...|..+++.+..+.
T Consensus       567 ~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lY----wtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          567 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVF----WTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEE----EEETTTTEEEEEETTTCCCCEEEE
T ss_pred             cCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEE----EEECCCCEEEEEeCCCCcceEEee
Confidence            876666655 445789999986544433333211 1124566653  44432    555667789999987776554443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.45  E-value=6e-05  Score=62.73  Aligned_cols=78  Identities=15%  Similarity=0.182  Sum_probs=55.1

Q ss_pred             CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      +|.|.-||+.+++.+.+..... ++..-.....+.+++.++.|+.++.||.++|+.+.++.........-+.|..+|++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            5789999999999877664332 22221222246677789999999999999999999887654322233667789986

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.40  E-value=1.9e-06  Score=73.27  Aligned_cols=176  Identities=10%  Similarity=-0.059  Sum_probs=97.6

Q ss_pred             CceEEEECCCCCeEEEE-ecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEc
Q 024868           65 DPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHW  141 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~  141 (261)
                      .+..+++.+.+..|+.+ ...+.|.++++..... ..+..      ........++++|.+.+|+.+..  .+.|..+++
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~  526 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFR------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  526 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECC------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEe------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence            45678888655444443 4467898888765432 11110      11234577899997666555542  267887776


Q ss_pred             cCceEEeeccccCCceeEEEEcCCCCEEE-EecCCCcEEEEEccCCcEEEEEeec-CCCceEEEEEecCCCcceEEEEEe
Q 024868          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQ  219 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~  219 (261)
                      ............-.....|+|+|++..|+ +-+..+.|..+|+........+... .......+++..+  .+    .++
T Consensus       527 dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~l----ywt  600 (699)
T 1n7d_A          527 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KV----FWT  600 (699)
T ss_dssp             SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EE----EEE
T ss_pred             CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EE----EEE
Confidence            53222111112223467899999765554 4455678999998643332222211 1112445666443  42    244


Q ss_pred             eCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (261)
Q Consensus       220 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  253 (261)
                      ....+.|..+|..+++.+..+.........+++.
T Consensus       601 d~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          601 DIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             CSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred             eCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence            5666789999988888765554332334444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.40  E-value=7.4e-05  Score=57.32  Aligned_cols=169  Identities=14%  Similarity=0.232  Sum_probs=102.7

Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC----CcE--EEEe-c-c--CCeEEEEEcc-
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSR--FAAG-G-V--DGHLRIMHWP-  142 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~~~-~-~--d~~i~~~d~~-  142 (261)
                      ...+++.....+-+.+||+. ++.        ...+. .+.++.+..-|+    |+.  ++.+ . .  +++|.+|++. 
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~-G~~--------l~~~~-~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp  108 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD-GKM--------LHSYN-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT-SCE--------EEEEC-CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred             CccEEEEEcCCCCEEEEcCC-CcE--------EEEcc-CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence            34456666677789999994 443        11122 245666666663    332  3333 3 3  5789999773 


Q ss_pred             -CceEEeeccc------cC-CceeEEEE--cCC-CC-EEEEecCCCcEEEEEcc-------CCcEEEEEeecCCCceEEE
Q 024868          143 -SLRIILDEPK------AH-KSVLDMDF--SLD-SE-FLATTSTDGSARIWKTE-------DGVAWTFLTRNSDEKIELC  203 (261)
Q Consensus       143 -~~~~~~~~~~------~~-~~v~~~~~--s~~-~~-~l~~~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~v~~~  203 (261)
                       +++ +.....      .. ..+..+++  +|. ++ +++....+|.+..|++.       +.+.++++...  ..+..+
T Consensus       109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~Egc  185 (355)
T 3amr_A          109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGM  185 (355)
T ss_dssp             TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEE
T ss_pred             CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceE
Confidence             333 333311      11 45677887  774 44 67777888999999883       34566777644  358889


Q ss_pred             EEecCCCcceEEEEEeeCCCcEEEEEECC-----CCeEEeeee--ccCcCeeEEEE--eeCCC-EEe
Q 024868          204 RFSKDGTKPFLFCTVQRGDKALLAVYDIS-----TWNKIGHKR--LLRKPASVLSI--SLDGK-YLA  260 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~-----~~~~~~~~~--~~~~~v~~~~~--s~dg~-~la  260 (261)
                      ...+...+     ++.+.++.-|..||.+     +++.+....  .....+..|++  .++|+ ||+
T Consensus       186 vvDd~~g~-----Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi  247 (355)
T 3amr_A          186 AADDEYGR-----LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM  247 (355)
T ss_dssp             EEETTTTE-----EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred             EEcCCCCe-----EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence            99988777     4667777668888865     344553332  12246777877  45555 554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.39  E-value=0.0001  Score=56.12  Aligned_cols=167  Identities=11%  Similarity=0.052  Sum_probs=106.6

Q ss_pred             eecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCC--C--CCCeEEEEE---eeCCcEEEE
Q 024868           58 VFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQ--D--AGPQKCLSF---SVDGSRFAA  129 (261)
Q Consensus        58 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~--~--~~~v~~~~~---s~~~~~l~~  129 (261)
                      .++....-..+++|.+....|..++ ..++|..|+...+.....    ......  .  ...+..+.|   .|+++++++
T Consensus         7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~----~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv   82 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV----VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAV   82 (334)
T ss_dssp             EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE----CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEE
T ss_pred             EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE----ecCCccccCCCcceeeEEEEeccCCCCcEEEE
Confidence            3444455567899988666666665 689999999875432111    111111  1  124589999   688888776


Q ss_pred             ecc-------------CCeEEEEEcc---CceEEeecc--c-----------cCCceeEEEEcCCCCEEEEecCC-CcEE
Q 024868          130 GGV-------------DGHLRIMHWP---SLRIILDEP--K-----------AHKSVLDMDFSLDSEFLATTSTD-GSAR  179 (261)
Q Consensus       130 ~~~-------------d~~i~~~d~~---~~~~~~~~~--~-----------~~~~v~~~~~s~~~~~l~~~~~d-~~i~  179 (261)
                      ...             +..+..||+.   +++......  .           .......++..++|+..++++.. +.|.
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~  162 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA  162 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence            432             5779999998   676543321  0           11247899999999988888877 7777


Q ss_pred             EEEccCCcEEEEEeecC-----CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          180 IWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       180 iwd~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      ..+... +.+..+....     ....+.++++|+|+.+     +.....+.|..+|+++.
T Consensus       163 rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~L-----iv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          163 RVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKL-----IAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEE-----EEESSSSSEEEEECSSS
T ss_pred             EEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEE-----EEEcCCCeEEEEcCCCC
Confidence            766543 3333322111     1126689999999973     33433899999998754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=0.00054  Score=55.42  Aligned_cols=160  Identities=6%  Similarity=-0.048  Sum_probs=92.2

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC---CCCCceEEEE-------CCCCC
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAV-------NPSGD   76 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~   76 (261)
                      ...++|.|.. ..+++++-....        .|+.+|..+..+      ......   .......++|       +++++
T Consensus       141 p~~la~dp~~-~~~Lyv~~~~~~--------~i~~ID~~~~~v------~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~  205 (496)
T 3kya_A          141 NGRLAFDPLN-KDHLYICYDGHK--------AIQLIDLKNRML------SSPLNINTIPTNRIRSIAFNKKIEGYADEAE  205 (496)
T ss_dssp             EEEEEEETTE-EEEEEEEEETEE--------EEEEEETTTTEE------EEEECCTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred             CCEEEEccCC-CCEEEEEECCCC--------eEEEEECCCCEE------EEEEccCccccCCCcEEEEeecccccCCCCC
Confidence            4567787621 255666555444        789999988775      222222   1235889999       99999


Q ss_pred             eEEEEecCC-c------EEEEEEeC-CccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEcc-----
Q 024868           77 DFVCSTTNG-G------CKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWP-----  142 (261)
Q Consensus        77 ~l~~~~~dg-~------i~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~-----  142 (261)
                      .|+++...+ .      +.+++... +..............   .....++++|+ +.++++-..++.|..+|+.     
T Consensus       206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~---~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~  282 (496)
T 3kya_A          206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY---KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKT  282 (496)
T ss_dssp             EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE---SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHH
T ss_pred             EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC---CCceEEEEcCCCCeEEEEECCCCEEEEEeccccccc
Confidence            777665553 2      55554333 111100000001111   23456888995 5555555678889999987     


Q ss_pred             --CceE-----------Eee--ccccCCceeEEEEcCCCCEEEE-ecCCCcEEEEEcc
Q 024868          143 --SLRI-----------ILD--EPKAHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTE  184 (261)
Q Consensus       143 --~~~~-----------~~~--~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~iwd~~  184 (261)
                        ++..           ...  ..........++|+|+|+.|+. -+....|+.++..
T Consensus       283 ~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          283 IKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence              4432           011  1122234679999999995444 4566788886654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.36  E-value=0.00012  Score=60.85  Aligned_cols=159  Identities=9%  Similarity=0.022  Sum_probs=95.6

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE-EEEEeeCCcEEEEecc------CCeEEEEEccCceEE
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGV------DGHLRIMHWPSLRII  147 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~  147 (261)
                      +..+++++.|+.++.+|..+++...+......   .....+. .... .++ .+++++.      ++.|+.+|.++++.+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~---~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDP---KVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCG---GGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCC---CccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            55777888899999999988876443221110   0000111 1111 144 4455543      789999999999987


Q ss_pred             eeccccCCc--------------------------------------eeEEEEcCCCCEEEEecCC--------------
Q 024868          148 LDEPKAHKS--------------------------------------VLDMDFSLDSEFLATTSTD--------------  175 (261)
Q Consensus       148 ~~~~~~~~~--------------------------------------v~~~~~s~~~~~l~~~~~d--------------  175 (261)
                      .+.......                                      ...+++.++...++.++.+              
T Consensus       190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence            655432110                                      0235566766666665532              


Q ss_pred             --CcEEEEEccCCcEEEEEeecC---------CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          176 --GSARIWKTEDGVAWTFLTRNS---------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       176 --~~i~iwd~~~~~~~~~~~~~~---------~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                        +.|..+|.++|+.+..++...         ..++ -+...++|+...+  ++.++.+|.++++|.++|+.+....
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~--v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPL--LSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEE--EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEE--EEEeCCCcEEEEEECCCCCEEeeec
Confidence              359999999999988776431         1112 1222357752111  4667889999999999999875544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.35  E-value=0.00037  Score=54.00  Aligned_cols=164  Identities=8%  Similarity=0.024  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCceecCCeEEeeecC-----CCCCceEEEECC--CCC-eEEEEe-c--CCcEEEEEEeCCccccceeeeeC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDE-----SEGDPMTIAVNP--SGD-DFVCST-T--NGGCKLFEVYGGATDINLLAKKM  106 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l~~~~-~--dg~i~i~~~~~~~~~~~~~~~~~  106 (261)
                      .|+.+|+++....   .....+.+     ..-....+.+.+  ++. +|+++. .  +.++.+|+++.............
T Consensus        84 ~I~~~d~~~~~~~---~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           84 KILLMDLNEKEPA---VSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             EEEEEETTSSSCC---EEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             eEEEEecCCCCCc---eEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            8889998743211   11222322     234677888755  454 444443 2  46788998876543333222211


Q ss_pred             CCCCCCCCeEEEEEeeCCcEEEEec---c--------------CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEE
Q 024868          107 PPLQDAGPQKCLSFSVDGSRFAAGG---V--------------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL  169 (261)
Q Consensus       107 ~~~~~~~~v~~~~~s~~~~~l~~~~---~--------------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  169 (261)
                      .  ......+++.+.++|++.++..   .              .|.++-+|.  ++. ......-.....++|+||++.+
T Consensus       161 g--~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~l  235 (355)
T 3sre_A          161 H--KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYV  235 (355)
T ss_dssp             C--TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEE
T ss_pred             c--CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEE
Confidence            1  1235679999999999877653   1              244555553  322 2222223356889999999877


Q ss_pred             EEec-CCCcEEEEEccC-CcEE--EEEeecCCCceEEEEEec-CCCc
Q 024868          170 ATTS-TDGSARIWKTED-GVAW--TFLTRNSDEKIELCRFSK-DGTK  211 (261)
Q Consensus       170 ~~~~-~d~~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~~p-~~~~  211 (261)
                      +.+. ..+.|+.|++.. ++..  +.+.  .....-.+++.+ +|+.
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCE
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcE
Confidence            6654 568899999863 3322  2332  234577889998 5885

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.28  E-value=0.0012  Score=57.17  Aligned_cols=212  Identities=12%  Similarity=-0.013  Sum_probs=114.4

Q ss_pred             EEEEEcCCCCceecCCeEEe-eecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTY-VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      -++.||..+..+..-..... ...-....|.++...+++...+. +.+| +.+||..+....................|.
T Consensus       184 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~G-l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~  261 (781)
T 3v9f_A          184 GLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSKG-LALFNANTETFTNFHNNPGNIHGALSSYIF  261 (781)
T ss_dssp             EEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETTE-EEEEETTTTEEEC-----------CCCCEE
T ss_pred             CeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCCc-HheECCCCCcEEEEEcCCCccccccCceEE
Confidence            47778877654311000000 00011356889988888875554 4454 888987655421110000000011245788


Q ss_pred             EEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc--------------ccCCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 024868          117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--------------KAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (261)
Q Consensus       117 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd  182 (261)
                      ++...++|.+.+ |+..+-|.++|..+........              -....|.++...++|.+ -.|+.++-|..++
T Consensus       262 ~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~  339 (781)
T 3v9f_A          262 SIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGGINFIS  339 (781)
T ss_dssp             EEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSCEEEEC
T ss_pred             EEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCeEEEeC
Confidence            998888886544 4453558888876654321111              11236889988888874 4455567788898


Q ss_pred             ccCCcEEEEEe--------ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee---eccCcCeeEEE
Q 024868          183 TEDGVAWTFLT--------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLS  251 (261)
Q Consensus       183 ~~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~  251 (261)
                      ..++.......        .-....|.++...++|..      ..+..++-|..||..+++.....   ......|.++.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l------Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~  413 (781)
T 3v9f_A          340 NAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL------WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL  413 (781)
T ss_dssp             SSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE------EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred             CCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE------EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence            77654322211        001235888988888874      44444445888998764432111   12235678888


Q ss_pred             EeeCCCEE
Q 024868          252 ISLDGKYL  259 (261)
Q Consensus       252 ~s~dg~~l  259 (261)
                      ..++|++.
T Consensus       414 ~d~~g~lW  421 (781)
T 3v9f_A          414 KDSEGNLW  421 (781)
T ss_dssp             ECTTSCEE
T ss_pred             ECCCCCEE
Confidence            77777654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.00098  Score=57.61  Aligned_cols=186  Identities=11%  Similarity=0.029  Sum_probs=110.4

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeee--CCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEE
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK--MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d  140 (261)
                      ...|.++...++|. |..|+.++-|..++..............  ....-....|.++...++|++. +|+.++-|..|+
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~  389 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE  389 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence            45689999988887 4455655558888876543211100000  0011123568888888877644 455555688898


Q ss_pred             ccCceEEeec---cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee--cCCCceEEEEEecCCCcceEE
Q 024868          141 WPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       141 ~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      ..++......   ......|.++...++|++.+ ++.++.+..+|.++++.. .+..  .....|.++...++|+.    
T Consensus       390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~l----  463 (781)
T 3v9f_A          390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKI----  463 (781)
T ss_dssp             TTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEE----
T ss_pred             CCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCE----
Confidence            7654432111   11224688998888887555 555667889998776543 2321  12235888888888874    


Q ss_pred             EEEeeCCCcEEEEEECCCCeEEeeeecc-----CcCeeEEEEeeCCCEE
Q 024868          216 CTVQRGDKALLAVYDISTWNKIGHKRLL-----RKPASVLSISLDGKYL  259 (261)
Q Consensus       216 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~s~dg~~l  259 (261)
                        ..+.. +-|..||..+++........     ...+.++...++|++.
T Consensus       464 --wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW  509 (781)
T 3v9f_A          464 --WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW  509 (781)
T ss_dssp             --EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred             --EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE
Confidence              22333 35889998876543222111     3567888888887754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.27  E-value=0.00075  Score=52.29  Aligned_cols=195  Identities=13%  Similarity=0.113  Sum_probs=107.9

Q ss_pred             ecCCCCCceEEEECCCCCeEEEE------------ecCCcEEEEEEeCCccccceeeeeCC-CCCCCCCeEEEEEee--C
Q 024868           59 FDESEGDPMTIAVNPSGDDFVCS------------TTNGGCKLFEVYGGATDINLLAKKMP-PLQDAGPQKCLSFSV--D  123 (261)
Q Consensus        59 ~~~~~~~v~~~~~~~~~~~l~~~------------~~dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~--~  123 (261)
                      +++-......+...|+|..++++            ..+|.|.++|.++.......+...-. .-...-....+.+.+  +
T Consensus        45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d  124 (355)
T 3sre_A           45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  124 (355)
T ss_dssp             CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred             eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence            44323456678888887655554            26899999998743221111111100 111123567788877  4


Q ss_pred             Cc-EEEEec-c--CCeEEEEEccCce--E--Eeecccc-CCceeEEEEcCCCCEEEEecC---C------------CcEE
Q 024868          124 GS-RFAAGG-V--DGHLRIMHWPSLR--I--ILDEPKA-HKSVLDMDFSLDSEFLATTST---D------------GSAR  179 (261)
Q Consensus       124 ~~-~l~~~~-~--d~~i~~~d~~~~~--~--~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---d------------~~i~  179 (261)
                      ++ +|+++. .  +.++.+|++....  .  +...... -.....+.+.++|++.++...   |            ..-.
T Consensus       125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~  204 (355)
T 3sre_A          125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF  204 (355)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred             CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence            54 344442 2  4678888776432  1  1112111 125789999999998777541   1            1233


Q ss_pred             EEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC-CeEE--eeeeccCcCeeEEEEee-C
Q 024868          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKI--GHKRLLRKPASVLSISL-D  255 (261)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~--~~~~~~~~~v~~~~~s~-d  255 (261)
                      +|.+..++.. .+..... ..+.++|+||++.+|    ++-+..+.|+.||+.. ++..  ..+ ...+..-.+++.+ +
T Consensus       205 vyr~d~~~~~-~~~~~l~-~pNGia~spDg~~lY----vadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~  277 (355)
T 3sre_A          205 VTYYSPNDVR-VVAEGFD-FANGINISPDGKYVY----IAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVT  277 (355)
T ss_dssp             EEEECTTCCE-EEEEEES-SEEEEEECTTSSEEE----EEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTT
T ss_pred             EEEEECCeEE-EeecCCc-ccCcceECCCCCEEE----EEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCC
Confidence            4444334433 2322222 378999999999853    4445567899999863 3321  222 2245566788888 5


Q ss_pred             CCEEe
Q 024868          256 GKYLA  260 (261)
Q Consensus       256 g~~la  260 (261)
                      |++.+
T Consensus       278 G~lwv  282 (355)
T 3sre_A          278 GDLWV  282 (355)
T ss_dssp             CCEEE
T ss_pred             CcEEE
Confidence            87643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.26  E-value=0.00072  Score=51.99  Aligned_cols=192  Identities=13%  Similarity=0.101  Sum_probs=106.5

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      .++.+.+.++   ..+++++. ++        .++.-......+      ......+...+..+.+.+++..++++ .+|
T Consensus       123 ~~~~i~~~~~---~~~~~~~~-~g--------~v~~S~DgG~tW------~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G  183 (327)
T 2xbg_A          123 SPRLIKALGN---GSAEMITN-VG--------AIYRTKDSGKNW------QALVQEAIGVMRNLNRSPSGEYVAVS-SRG  183 (327)
T ss_dssp             CEEEEEEEET---TEEEEEET-TC--------CEEEESSTTSSE------EEEECSCCCCEEEEEECTTSCEEEEE-TTS
T ss_pred             CeEEEEEECC---CCEEEEeC-Cc--------cEEEEcCCCCCC------EEeecCCCcceEEEEEcCCCcEEEEE-CCC
Confidence            3566666543   34555553 33        344433333333      22233445678899999998877665 455


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccc----cCCceeEEE
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK----AHKSVLDMD  161 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~~~  161 (261)
                      .++.-+-..+.. .....     ......+..+.++++++.++.+ .+|.+++.+...++.-.....    ....+..+.
T Consensus       184 ~~~~S~d~gG~t-W~~~~-----~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~  256 (327)
T 2xbg_A          184 SFYSTWEPGQTA-WEPHN-----RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLA  256 (327)
T ss_dssp             SEEEEECTTCSS-CEEEE-----CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEE
T ss_pred             cEEEEeCCCCCc-eeECC-----CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEE
Confidence            444332111221 11111     1123567889999988776555 678777764222333222211    123588999


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      +.++++.++.+. ++.+ .+..+.|+.-..+...  ....+.++.|.++++.      +..+.+|.|.-++-
T Consensus       257 ~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~------~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          257 YRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQG------FILGQKGILLRYVT  320 (327)
T ss_dssp             ESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEE------EEECSTTEEEEECC
T ss_pred             ecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCce------EEEcCCceEEEEcC
Confidence            998887777665 5666 4455555544434321  1234788888866653      66677888776653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.25  E-value=1.6e-05  Score=67.64  Aligned_cols=162  Identities=6%  Similarity=-0.096  Sum_probs=94.9

Q ss_pred             CCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCC-CCCCCeEEEEEeeCC-cEEEEeccCCeEEEEE
Q 024868           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMH  140 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d  140 (261)
                      ..+..++|.+.+..|+.+. ..+.|+.+++.+......    ....+ ........+++.+.+ +++++-...+.|.+++
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~----~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d  481 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  481 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC----CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc----eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence            4567899998777776654 357888888875210000    01111 112234568888654 4444444567899999


Q ss_pred             ccCceEEeeccccCCceeEEEEcCCCCEEEEecC--CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEE
Q 024868          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~  218 (261)
                      +..................++++|.+.+|+.+..  .+.|..+++.... ...+....-...+.++|+|++..+|    +
T Consensus       482 ~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY----~  556 (699)
T 1n7d_A          482 TKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLY----W  556 (699)
T ss_dssp             SSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEE----E
T ss_pred             cCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEE----E
Confidence            7654433222222345678999997665555443  2678887775332 2222211222467899999887754    4


Q ss_pred             eeCCCcEEEEEECCCC
Q 024868          219 QRGDKALLAVYDISTW  234 (261)
Q Consensus       219 ~~~~d~~i~~~d~~~~  234 (261)
                      +-...+.|..+|+...
T Consensus       557 aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGG  572 (699)
T ss_dssp             EETTTTEEEEECSSSS
T ss_pred             EecCCCeEEEEccCCC
Confidence            4456678999998643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.21  E-value=0.00028  Score=54.87  Aligned_cols=227  Identities=11%  Similarity=0.071  Sum_probs=111.0

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEe-eecCCCCCceEEEECCC---CCeEEEEec
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTY-VFDESEGDPMTIAVNPS---GDDFVCSTT   83 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~---~~~l~~~~~   83 (261)
                      ..++|.|+   ..++++ ...+        .|+.++ . +..  ...... ...........++++|+   +..|.++..
T Consensus        34 ~~ia~~pd---G~l~V~-e~~g--------~I~~i~-~-g~~--~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           34 WALAFLPD---GGMLIA-ERPG--------RIRLFR-E-GRL--STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             EEEEECTT---SCEEEE-ETTT--------EEEEEE-T-TEE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             eEEEEcCC---CeEEEE-eCCC--------eEEEEE-C-CCc--cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence            46777775   334444 3345        788777 2 221  011110 11122456889999998   555554433


Q ss_pred             -C-----CcEEEEEEeCCccc--cceeeeeCCC-CCCCCCeEEEEEeeCCcEEEEeccC-------------CeEEEEEc
Q 024868           84 -N-----GGCKLFEVYGGATD--INLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVD-------------GHLRIMHW  141 (261)
Q Consensus        84 -d-----g~i~i~~~~~~~~~--~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d-------------~~i~~~d~  141 (261)
                       .     +.|..++.......  ..++.. ... .........++|.|||.++++.+..             +.|.-++.
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~-~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~  176 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGERGVLDRVVLDG-IPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP  176 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSCEEEEEEEEEE-ECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred             cCCCCCccEEEEEEeCCCCcCceEEEEEe-CCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence             2     56778887643210  111111 110 0111223679999999766664321             45555554


Q ss_pred             cCceE-------------EeeccccCCceeEEEEcC-CCCEEEEecCCCcE------EEEEccCCc--------------
Q 024868          142 PSLRI-------------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSA------RIWKTEDGV--------------  187 (261)
Q Consensus       142 ~~~~~-------------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i------~iwd~~~~~--------------  187 (261)
                      . ++.             ...+.........++|+| +++++++-...+.+      .|.-+..+.              
T Consensus       177 d-G~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~  255 (352)
T 2ism_A          177 E-GEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDP  255 (352)
T ss_dssp             T-SSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred             C-CCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCC
Confidence            3 210             000111123357789999 66655553322221      122222221              


Q ss_pred             ----EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe----E--EeeeeccCcCeeEEEEeeCCC
Q 024868          188 ----AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----K--IGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       188 ----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~----~--~~~~~~~~~~v~~~~~s~dg~  257 (261)
                          ++..+. ++. ....++| .+|..     .++.-..+.|...++....    .  ...+......+..+++.|||.
T Consensus       256 ~~~~p~~~~~-~~~-ap~G~~~-~~G~l-----~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  327 (352)
T 2ism_A          256 RYRDPLYFWP-QGF-PPGNLAF-FRGDL-----YVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA  327 (352)
T ss_dssp             TSCCCSEECT-TCC-CEEEEEE-ETTEE-----EEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC
T ss_pred             CCcCCeEecC-CCC-CCcceEE-ECCEE-----EEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc
Confidence                122221 112 3567777 45654     2444555678877775332    1  112212235788999999997


Q ss_pred             EEe
Q 024868          258 YLA  260 (261)
Q Consensus       258 ~la  260 (261)
                      ..+
T Consensus       328 lyv  330 (352)
T 2ism_A          328 LYV  330 (352)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.19  E-value=0.001  Score=50.71  Aligned_cols=209  Identities=10%  Similarity=0.031  Sum_probs=118.5

Q ss_pred             EEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC----CC--CCceEEEE---CCCCCeEE
Q 024868            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE----SE--GDPMTIAV---NPSGDDFV   79 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~--~~v~~~~~---~~~~~~l~   79 (261)
                      +++|.+..  ..+.++.-..+        .|..|++..+...     ...+.+    ..  ..+..+.|   .|++++++
T Consensus        17 ~~~wd~~~--g~~~vs~l~~g--------~V~~~~~~~~~~~-----~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~v   81 (334)
T 2p9w_A           17 DTIYDRTR--QVFYQSNLYKG--------RIEVYNPKTQSHF-----NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFA   81 (334)
T ss_dssp             CEEEETTT--TEEEEEETTTT--------EEEEECTTTCCEE-----EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred             CccCcCCC--CEEEEEeccCC--------EEEEEcCCCCeEE-----EEecCCccccCCCcceeeEEEEeccCCCCcEEE
Confidence            56787642  44444444667        8999999755420     112222    11  13579999   68877766


Q ss_pred             EEec-------------CCcEEEEEEe---CCccccceee-eeCCC----CC-CCCCeEEEEEeeCCcEEEEeccC-CeE
Q 024868           80 CSTT-------------NGGCKLFEVY---GGATDINLLA-KKMPP----LQ-DAGPQKCLSFSVDGSRFAAGGVD-GHL  136 (261)
Q Consensus        80 ~~~~-------------dg~i~i~~~~---~~~~~~~~~~-~~~~~----~~-~~~~v~~~~~s~~~~~l~~~~~d-~~i  136 (261)
                      +...             +..|..||+.   +++.....-. .....    .. ......+++..++|+..++++.. +.|
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I  161 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI  161 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeE
Confidence            5432             5678899998   5543221110 00000    00 11347899999999998888777 777


Q ss_pred             EEEEccCceEE-eeccc--cC--CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE--EEEEe-ec--CCCceEEE-EE
Q 024868          137 RIMHWPSLRII-LDEPK--AH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLT-RN--SDEKIELC-RF  205 (261)
Q Consensus       137 ~~~d~~~~~~~-~~~~~--~~--~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~-~~--~~~~v~~~-~~  205 (261)
                      ...+....... .....  ..  .....|+++|+|+.|++....+.+..+|+.+...  +..-. +.  .......+ .-
T Consensus       162 ~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~  241 (334)
T 2p9w_A          162 ARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTV  241 (334)
T ss_dssp             EEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEE
T ss_pred             EEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccc
Confidence            77775432221 11111  11  1367999999999888876699999999884322  11110 11  11123343 33


Q ss_pred             ecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      -.+|+.+    +++....+.+.+.+...++.
T Consensus       242 ~~~G~vl----lV~~~~~~~~~l~S~DgW~s  268 (334)
T 2p9w_A          242 PVGNESV----LVGARAPYAISFRSWDNWKS  268 (334)
T ss_dssp             EETTEEE----EEEEETTEEEEEECSSTTSE
T ss_pred             ccCCEEE----EEEcCCCCEEEEECCCCcce
Confidence            3466652    34444566777777665554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.19  E-value=0.002  Score=54.15  Aligned_cols=201  Identities=6%  Similarity=-0.097  Sum_probs=121.7

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d   84 (261)
                      .+..++|.+.  ...+.++-...+        .|+.++.++...      ...+......+..+++.+.+..|+.+. ..
T Consensus        38 ~~~~l~~d~~--~~~lywtD~~~~--------~I~r~~~~g~~~------~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~  101 (628)
T 4a0p_A           38 EASALDFDVT--DNRIYWTDISLK--------TISRAFMNGSAL------EHVVEFGLDYPEGMAVDWLGKNLYWADTGT  101 (628)
T ss_dssp             CEEEEEEETT--TTEEEEEETTTT--------EEEEEETTSCSC------EEEECSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEEECC--CCEEEEEECCCC--------eEEEEECCCCCc------EEEEeCCCCCcceEEEEeCCCEEEEEECCC
Confidence            4556777764  345555555556        788888766442      222332234577899987666665544 45


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      +.|.+.+++.... ..+..      ........++++|....|+...  ..+.|...++...... .+...-.....+++
T Consensus       102 ~~I~v~~~dG~~~-~~l~~------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~Glal  173 (628)
T 4a0p_A          102 NRIEVSKLDGQHR-QVLVW------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTI  173 (628)
T ss_dssp             TEEEEEETTSTTC-EEEEC------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEEEE
T ss_pred             CEEEEEecCCCcE-EEEEe------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceEEE
Confidence            7788888865432 11110      1234568999999555555543  2567888877543332 22233346789999


Q ss_pred             cCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe
Q 024868          163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (261)
Q Consensus       163 s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  238 (261)
                      +++++.|+.+ ...+.|..+|+..... ..+..... ...++++.. + .+    ..+-...+.|...|..+++...
T Consensus       174 D~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~-~-~l----y~tD~~~~~I~~~dk~tg~~~~  242 (628)
T 4a0p_A          174 DYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ-D-YI----YWTDWSRRSIERANKTSGQNRT  242 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET-T-EE----EEEETTTTEEEEEETTTCCSCE
T ss_pred             ccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC-C-EE----EEecCCCCEEEEEECCCCCceE
Confidence            9977666655 4567899999875443 33443333 366788765 3 32    2555667889999987776443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.13  E-value=0.0016  Score=50.67  Aligned_cols=227  Identities=13%  Similarity=0.038  Sum_probs=115.6

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEe-eecCCCCCceEEEECCC---CCeEEEEe
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTY-VFDESEGDPMTIAVNPS---GDDFVCST   82 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~---~~~l~~~~   82 (261)
                      ...++|.|+   ..++++ ...+        +|+.++.+...    ..... ...........++++|+   +..|.++.
T Consensus        31 P~~ia~~pd---G~l~V~-e~~g--------~I~~~d~~G~~----~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           31 PWSIAPLGG---GRYLVT-ERPG--------RLVLISPSGKK----LVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             EEEEEEEET---TEEEEE-ETTT--------EEEEECSSCEE----EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CeEEEEcCC---CeEEEE-eCCC--------EEEEEeCCCce----EeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            456788885   344444 3446        88888754321    11110 11222356889999997   44554443


Q ss_pred             c----C----CcEEEEEEeCCc--c--ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-------------CCeEE
Q 024868           83 T----N----GGCKLFEVYGGA--T--DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-------------DGHLR  137 (261)
Q Consensus        83 ~----d----g~i~i~~~~~~~--~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------d~~i~  137 (261)
                      .    +    ..|..|+.....  .  ...++.. ... ........++|.|||.++++.+.             .|.|.
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~-~~~-~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~  172 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG-IPG-AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKIL  172 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE-EEC-CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEE
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEc-CCC-CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEE
Confidence            3    2    567777776541  1  0111111 111 11123467999999987776432             14455


Q ss_pred             EEEccCceE--------EeeccccCCceeEEEEcC-CCCEEEEecCCC---cEEEEEccCCc------------------
Q 024868          138 IMHWPSLRI--------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDG---SARIWKTEDGV------------------  187 (261)
Q Consensus       138 ~~d~~~~~~--------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~---~i~iwd~~~~~------------------  187 (261)
                      -++.. ++.        ...+.........++|+| +|+++++-...+   .|.+.  ..+.                  
T Consensus       173 ri~~d-G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~  249 (354)
T 3a9g_A          173 RVDEE-GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVD  249 (354)
T ss_dssp             EECTT-SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCC
T ss_pred             EEcCC-CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcC
Confidence            55543 220        001111223457899999 676555533222   23332  2221                  


Q ss_pred             EEEEEeecCCCceEEEEEe-------cCCCcceEEEEEeeCCCcEEEEEECCCC-eEE--eeee-ccCcCeeEEEEeeCC
Q 024868          188 AWTFLTRNSDEKIELCRFS-------KDGTKPFLFCTVQRGDKALLAVYDISTW-NKI--GHKR-LLRKPASVLSISLDG  256 (261)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~-------p~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~--~~~~-~~~~~v~~~~~s~dg  256 (261)
                      ++..+. +....+..++|.       .+|++     +++.-..+.|...++... +..  ..+. .....+..+++.|||
T Consensus       250 p~~~~~-~~~~ap~G~~~y~g~~fp~~~G~l-----~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG  323 (354)
T 3a9g_A          250 PVIDTG-SETWAPSGASFVHGDMFPGLRGWL-----LIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG  323 (354)
T ss_dssp             CSEECT-TCCCCEEEEEECCSSSCGGGTTEE-----EEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred             CEeecC-CCCcCCcceEEECCCCCcccCCcE-----EEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence            222221 112236778884       45654     344555678888888753 222  1221 123568899999999


Q ss_pred             CEEe
Q 024868          257 KYLA  260 (261)
Q Consensus       257 ~~la  260 (261)
                      ...+
T Consensus       324 ~lyv  327 (354)
T 3a9g_A          324 GILI  327 (354)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            7654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.12  E-value=0.0011  Score=55.55  Aligned_cols=203  Identities=7%  Similarity=-0.070  Sum_probs=111.4

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d   84 (261)
                      .+..++|.+..  ..+.++--..+        +|+.++.++...     ....+...-..+..+++.+.+..|+.+. ..
T Consensus        41 ~~~~ld~~~~~--~~ly~sD~~~~--------~I~r~~~~g~~~-----~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~  105 (619)
T 3s94_A           41 DAAAVDFVFSH--GLIYWSDVSEE--------AIKRTEFNKTES-----VQNVVVSGLLSPDGLACDWLGEKLYWTDSET  105 (619)
T ss_dssp             CEEEEEEETTT--TEEEEEETTTT--------EEEEEEC----------CEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEEEeCC--CEEEEEECCCC--------eEEEEEccCCCc-----eEEEEeCCCCCcCeEEEEecCCEEEEEeCCC
Confidence            34566776642  44444443444        677777655421     0122333335688999998666665554 46


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      +.|.+.++++.... .+..      ........++++|.+..|+.+.  ..+.|...++............-.....+++
T Consensus       106 ~~I~v~~~dG~~~~-~l~~------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glal  178 (619)
T 3s94_A          106 NRIEVSNLDGSLRK-VLFW------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTL  178 (619)
T ss_dssp             TEEEEEETTSCSCE-EEEC------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             CEEEEEECCCCCEE-EEEe------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEE
Confidence            78999988765421 1111      1223467899999755555554  2456777776533222222222345789999


Q ss_pred             cCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       163 s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                      ++++..|+.+ ...+.|..+|+.............. ...++++..+  .+    ..+-...+.|...|..+++..
T Consensus       179 d~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~l----y~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          179 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--IL----YWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             ETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS--EE----EEECTTTCSEEEEESSSCCCC
T ss_pred             EccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EE----EEecCCCCEEEEEECCCCccc
Confidence            9976666554 4567888888865433222221222 2456666554  32    245556678999998777644

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.07  E-value=0.0027  Score=53.23  Aligned_cols=183  Identities=8%  Similarity=-0.051  Sum_probs=104.5

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      .|...+.+....    . ...+...-..+..++|++.+..|+.+.. .+.|+.+++.+........      ........
T Consensus        19 ~I~~i~~~~~~~----~-~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~------~~~~~~P~   87 (619)
T 3s94_A           19 DLRLVDATNGKE----N-ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV------VSGLLSPD   87 (619)
T ss_dssp             BEEEECCC--------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE------CSSCSCEE
T ss_pred             cEEEEeCCCCcc----e-EEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE------eCCCCCcC
Confidence            566777765321    0 1112223345789999997776665544 5778888876542111111      11224678


Q ss_pred             EEEEeeCCcEEEE-eccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC--CCcEEEEEccCCcEEEEEe
Q 024868          117 CLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       117 ~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~  193 (261)
                      .+++++.+..|+. -...+.|.+.++............-.....+++.|.+.+|+.+..  .+.|...++..... ..+.
T Consensus        88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~  166 (619)
T 3s94_A           88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIII  166 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE
T ss_pred             eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEE
Confidence            9999996555544 456788999998654332222223345788999997555555442  45677777653333 3332


Q ss_pred             ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      ...-.....++++++++.+|    .+-...+.|..+|+.....
T Consensus       167 ~~~~~~P~Glald~~~~~LY----~aD~~~~~I~~~~~dG~~~  205 (619)
T 3s94_A          167 NSEIYWPNGLTLDYEEQKLY----WADAKLNFIHKSNLDGTNR  205 (619)
T ss_dssp             CSSCSSEEEEEEETTTTEEE----EEETTTCCEEEESSSCCEE
T ss_pred             eCCCCCCcEEEEEccCCEEE----EEeCCCCeEEEecCCCCcc
Confidence            22233588999999877754    3445567899999875443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.06  E-value=0.002  Score=49.45  Aligned_cols=226  Identities=13%  Similarity=0.096  Sum_probs=114.6

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ...+.++++.++   ...+++| ..+        .++.-......+....   .........+.++.+.+ +..++ ++.
T Consensus        35 ~~~~~~v~~~~~---~~~~~~G-~~g--------~i~~s~DgG~tW~~~~---~~~~~~~~~~~~i~~~~-~~~~~-~g~   97 (327)
T 2xbg_A           35 TATILDMSFIDR---HHGWLVG-VNA--------TLMETRDGGQTWEPRT---LVLDHSDYRFNSVSFQG-NEGWI-VGE   97 (327)
T ss_dssp             SSCEEEEEESSS---SCEEEEE-TTT--------EEEEESSTTSSCEECC---CCCSCCCCEEEEEEEET-TEEEE-EEE
T ss_pred             CCcEEEEEECCC---CcEEEEc-CCC--------eEEEeCCCCCCCeECC---CCCCCCCccEEEEEecC-CeEEE-EEC
Confidence            456778877542   4455554 345        5655443333331110   00112234688899976 44444 455


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec-cccCCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PKAHKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~  162 (261)
                      .+.  +|...++........   ......+.+..+.+.++++.++++ .++.|+.- .+.++.-... ......+..+.+
T Consensus        98 ~g~--i~~S~DgG~tW~~~~---~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~  170 (327)
T 2xbg_A           98 PPI--MLHTTDGGQSWSQIP---LDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR  170 (327)
T ss_dssp             TTE--EEEESSTTSSCEECC---CCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred             CCe--EEEECCCCCCceECc---cccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence            663  343433322111111   000112356778888888777666 45544321 1223221111 223346889999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      .|++++++.+...+..+-.|- .++.-..+.......+..+.+.++++.      ...+.+|.+++.+...++.-.....
T Consensus       171 ~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~------~~~~~~G~~~~s~~D~G~tW~~~~~  243 (327)
T 2xbg_A          171 SPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRL------WMIVNGGKIAFSDPDNSENWGELLS  243 (327)
T ss_dssp             CTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCE------EEEETTTEEEEEETTEEEEECCCBC
T ss_pred             cCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCE------EEEeCCceEEEecCCCCCeeEeccC
Confidence            999988877754333333332 122222222222335888999999875      3344567777765333443322221


Q ss_pred             ----cCcCeeEEEEeeCCCEEe
Q 024868          243 ----LRKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ----~~~~v~~~~~s~dg~~la  260 (261)
                          ....+..+.+.++++.++
T Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~  265 (327)
T 2xbg_A          244 PLRRNSVGFLDLAYRTPNEVWL  265 (327)
T ss_dssp             TTSSCCSCEEEEEESSSSCEEE
T ss_pred             CcccCCcceEEEEecCCCEEEE
Confidence                123577888888877665

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.04  E-value=0.00017  Score=58.36  Aligned_cols=158  Identities=10%  Similarity=0.032  Sum_probs=92.3

Q ss_pred             CceEEEECC-CCCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEE-------eeCCcEEEEeccCC-
Q 024868           65 DPMTIAVNP-SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-------SVDGSRFAAGGVDG-  134 (261)
Q Consensus        65 ~v~~~~~~~-~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~~~~l~~~~~d~-  134 (261)
                      ....++|.| +...|+.+.. .+.|++.|+..+... .+..  . ..........++|       +++++.|+++...+ 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~--~-~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLN--I-NTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEEC--C-TTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEc--c-CccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            356899998 3555555544 355777777665431 1111  0 0012345889999       99998666665443 


Q ss_pred             ------eEEEEEccC-ceEE-----eeccccCCceeEEEEcCC-CCEEEEecCCCcEEEEEcc-------CCcE------
Q 024868          135 ------HLRIMHWPS-LRII-----LDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTE-------DGVA------  188 (261)
Q Consensus       135 ------~i~~~d~~~-~~~~-----~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~-------~~~~------  188 (261)
                            .+.+++... +...     ..+. .......++.+|+ +.++++-..++.|..+|+.       ++..      
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                  266665333 1111     1111 1124467889995 4555566677889999997       5553      


Q ss_pred             -----EEE-EeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          189 -----WTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       189 -----~~~-~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                           ... +........+.++|+|+|+.+|    ++-.....|+.+|.
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lY----vaD~~~h~I~kid~  339 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAY----FGVINNHYFMRSDY  339 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEE----EEETTTTEEEEEEE
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEE----EEeCCCCEEEEEec
Confidence                 122 2222233468999999999533    44456678888654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.98  E-value=0.0027  Score=48.13  Aligned_cols=191  Identities=11%  Similarity=0.033  Sum_probs=96.3

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC----CcEEEEEEeC
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN----GGCKLFEVYG   94 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~~~~~   94 (261)
                      ..+++.||.+...      .++.||+.+..+...+    .++........+.+  ++..++.|+.+    ..+.+||..+
T Consensus        12 ~~l~~~GG~~~~~------~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~   79 (306)
T 3ii7_A           12 DYRIALFGGSQPQ------SCRYFNPKDYSWTDIR----CPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVK   79 (306)
T ss_dssp             CEEEEEECCSSTT------SEEEEETTTTEEEECC----CCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTT
T ss_pred             ceEEEEeCCCCCc------eEEEecCCCCCEecCC----CCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCC
Confidence            4577778765422      6889999888763221    11211112222222  56667777654    5677788766


Q ss_pred             CccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC------CeEEEEEccCceEEeeccccCC-ceeEEEEcCCCC
Q 024868           95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSE  167 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~  167 (261)
                      ..-  ....    .+... ........-+++.++.|+.+      ..+.+||..+.+-...-..... .-.+++. -+++
T Consensus        80 ~~W--~~~~----~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~  151 (306)
T 3ii7_A           80 DSW--YSKL----GPPTP-RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGL  151 (306)
T ss_dssp             TEE--EEEE----CCSSC-CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE
T ss_pred             CeE--EECC----CCCcc-ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCE
Confidence            542  1111    11111 11111222377888888755      4589999887653221111111 1112222 2667


Q ss_pred             EEEEecC---------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCC
Q 024868          168 FLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDIST  233 (261)
Q Consensus       168 ~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~  233 (261)
                      +++.|+.         -..+.+||+.+.+-...-.......-.+++. -+++. |    +.++.+     ..+.+||+.+
T Consensus       152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-~----v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKI-F----AVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE-E----EECCEETTEEBCCEEEEETTT
T ss_pred             EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEE-E----EEeCCCCCCCCceEEEeeCCC
Confidence            7777654         3458899998775433222111111112222 24543 2    334432     4689999987


Q ss_pred             Ce
Q 024868          234 WN  235 (261)
Q Consensus       234 ~~  235 (261)
                      .+
T Consensus       226 ~~  227 (306)
T 3ii7_A          226 NE  227 (306)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.92  E-value=0.0034  Score=47.38  Aligned_cols=196  Identities=13%  Similarity=0.092  Sum_probs=96.2

Q ss_pred             ceEEEEec-CCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEEEE
Q 024868           19 VNLVVLGK-SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEV   92 (261)
Q Consensus        19 ~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~   92 (261)
                      ..+++.|| .+.. .  ..-.++.||+.+..+...+    .++........+.  .+++.++.|+.+     ..+.+||.
T Consensus        15 ~~i~~~GG~~~~~-~--~~~~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~   85 (301)
T 2vpj_A           15 EVLLVVGGFGSQQ-S--PIDVVEKYDPKTQEWSFLP----SITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDY   85 (301)
T ss_dssp             EEEEEECCEETTT-E--ECCCEEEEETTTTEEEECC----CCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEET
T ss_pred             CEEEEEeCccCCC-c--ceeEEEEEcCCCCeEEeCC----CCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEEC
Confidence            45777777 3321 1  1125788899887763221    1221111122222  256667777654     45888888


Q ss_pred             eCCcc-ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-----CeEEEEEccCceEEe--eccccCCceeEEEEcC
Q 024868           93 YGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSL  164 (261)
Q Consensus        93 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~s~  164 (261)
                      .+... .....    ..+... .........+++.++.|+.+     ..+.+||..+.+-..  ...... .-.++.. -
T Consensus        86 ~~~~~~~W~~~----~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~-~  158 (301)
T 2vpj_A           86 TADEDGVWYSV----APMNVR-RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR-EGAGLVV-A  158 (301)
T ss_dssp             TCCTTCCCEEE----CCCSSC-CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC-BSCEEEE-E
T ss_pred             CCCCCCeeEEC----CCCCCC-ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc-ccceEEE-E
Confidence            76541 01111    111111 11111122367788887643     368899987765322  111111 1112222 2


Q ss_pred             CCCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEEECCCC
Q 024868          165 DSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTW  234 (261)
Q Consensus       165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~d~~~~  234 (261)
                      ++++++.|+.+     ..+.+||+.+.+-...-.......-.+++ .-+++. +    +.++.     ...+.+||+.+.
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i-~----v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHI-Y----VVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEE-E----EECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE-EECCEE-E----EEeCCCCCcccceEEEEeCCCC
Confidence            67777777654     46889999877654332111111111222 224443 2    34443     246999999876


Q ss_pred             eE
Q 024868          235 NK  236 (261)
Q Consensus       235 ~~  236 (261)
                      +-
T Consensus       233 ~W  234 (301)
T 2vpj_A          233 SW  234 (301)
T ss_dssp             EE
T ss_pred             cE
Confidence            53

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.91  E-value=0.0011  Score=52.12  Aligned_cols=150  Identities=13%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             CCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-----
Q 024868           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-----  146 (261)
Q Consensus        72 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-----  146 (261)
                      ..+|..++.+ .++.||.-++.... ..+.+...  ..-....+..+..||+|++||..+ +..|.+..+..+..     
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~~~--~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDS-LYHSLNFS--RHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCS-SCEEEECT--TTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCC-cceEEecC--cccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccc
Confidence            4466666664 45667766766433 12222111  000123567799999999999984 55788888873221     


Q ss_pred             -------Eeecc-c-----cCCceeEEEEcCC---CCEEEEecCCCcEEEEEccCC--cEEEEEeecC--------CCce
Q 024868          147 -------ILDEP-K-----AHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDG--VAWTFLTRNS--------DEKI  200 (261)
Q Consensus       147 -------~~~~~-~-----~~~~v~~~~~s~~---~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~--------~~~v  200 (261)
                             ...+. +     ...+|..+.|+|-   +..|++-..|+.|++||+...  ++. .+....        ...+
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence                   00111 0     2357999999994   457888889999999999852  222 232111        1247


Q ss_pred             EEEEEecCCCcceEEEEEeeCCCcEEEEEE
Q 024868          201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (261)
Q Consensus       201 ~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d  230 (261)
                      .+++|.+++-.+|   +++..+.|.|+-.-
T Consensus       183 ~S~~Fg~~~lTLY---vl~~t~~GDIYAlc  209 (452)
T 3pbp_A          183 TDLEFSKDGLTLY---CLNTTEGGDIFAFY  209 (452)
T ss_dssp             EEEEECTTSSCEE---EEECTTSCEEEEES
T ss_pred             EEEEEcCCCcEEE---EEecCCCCCEEEEC
Confidence            8889988765533   34455667666543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.91  E-value=0.0074  Score=50.73  Aligned_cols=198  Identities=8%  Similarity=-0.042  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      .|..++.++...    .....+. .-..+..++|++.+..|+.+. .++.|+.+++..... .....      .......
T Consensus        16 ~I~~i~l~~~~~----~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~------~g~~~P~   83 (628)
T 4a0p_A           16 DIRRISLETNNN----NVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVE------FGLDYPE   83 (628)
T ss_dssp             EEEEEESSCTTC----EEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC------SSCSCCC
T ss_pred             cEEEEECCCCCc----ceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEe------CCCCCcc
Confidence            677888766442    1111122 234678999999766666544 467888888765432 11110      1123567


Q ss_pred             EEEEeeCCcEEEEe-ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CCCcEEEEEccCCcEEEEEe
Q 024868          117 CLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       117 ~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~  193 (261)
                      .+++++.+..|+.+ ...+.|.+.++............-.....++++|....|+.+.  ..+.|...++...... .+.
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~  162 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLV  162 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEE
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEE
Confidence            89998765555444 4567899999764432222223334578999999655555543  2567888887644433 332


Q ss_pred             ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                      ... .....++++++++.+|    .+-...+.|..+|+..... ..+.........+++..
T Consensus       163 ~~~-~~P~GlalD~~~~~LY----~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~  217 (628)
T 4a0p_A          163 PNV-GRANGLTIDYAKRRLY----WTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ  217 (628)
T ss_dssp             CSC-SSEEEEEEETTTTEEE----EEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET
T ss_pred             CCC-CCcceEEEccccCEEE----EEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC
Confidence            233 3588999999888754    4445667899999875433 22222223344566544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.86  E-value=0.0049  Score=52.18  Aligned_cols=119  Identities=11%  Similarity=0.041  Sum_probs=74.4

Q ss_pred             eEEEECC-CCCeEEEEecCC-----------cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cC
Q 024868           67 MTIAVNP-SGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD  133 (261)
Q Consensus        67 ~~~~~~~-~~~~l~~~~~dg-----------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d  133 (261)
                      ...++.+ +++.++.|+.+.           .+.+||..++.-...  ...  .........+.++.++++.+++|+ .+
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~--~~~--~~~~~~~~~~~~~~~~g~lyv~GG~~~  264 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR--TVT--VTKHDMFCPGISMDGNGQIVVTGGNDA  264 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC--EEE--ECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC--ccc--CCCCCCccccccCCCCCCEEEeCCCCC
Confidence            3566777 888888876542           477888876653111  100  011122334567788999999998 45


Q ss_pred             CeEEEEEccCceEEeeccccCC-ceeEEEEcCCCCEEEEec-CC-----CcEEEEEccCCcEE
Q 024868          134 GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS-TD-----GSARIWKTEDGVAW  189 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~-~d-----~~i~iwd~~~~~~~  189 (261)
                      ..+.+||..+.+-......... .-.+++..+++++++.|+ .+     ..+.+||..+++..
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            6899999887653322111111 234556677999999988 34     46999999877643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.85  E-value=0.0056  Score=47.55  Aligned_cols=56  Identities=9%  Similarity=-0.029  Sum_probs=35.6

Q ss_pred             eEEEEEec-------CCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee---ccCcCeeEEEEeeCCCEEe
Q 024868          200 IELCRFSK-------DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       200 v~~~~~~p-------~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~dg~~la  260 (261)
                      +..+.|..       +|++     +++.-..+.|...++..++......   .....+..+++.|||.+.+
T Consensus       273 p~G~~~y~g~~fp~~~g~l-----~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv  338 (353)
T 2g8s_A          273 VSGMAFYNSDKFPQWQQKL-----FIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYV  338 (353)
T ss_dssp             EEEEEEECCSSSGGGTTEE-----EEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEE
T ss_pred             cceeEEECCccCcccCCcE-----EEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEE
Confidence            66777764       3444     3444556788888887665433222   2234788999999998654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.76  E-value=0.0031  Score=49.01  Aligned_cols=140  Identities=10%  Similarity=0.068  Sum_probs=78.3

Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccCce-EEeec---cccCCceeEEEEcCC---CCEEEEecC----C----Cc
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDE---PKAHKSVLDMDFSLD---SEFLATTST----D----GS  177 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~---~~~~~~v~~~~~s~~---~~~l~~~~~----d----~~  177 (261)
                      .....++|.|+|+++++- .++.|++++ .+++ .+..+   .........++++|+   +..|+.+..    +    +.
T Consensus        29 ~~P~~ia~~pdG~l~V~e-~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTE-RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEEe-CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            346789999999865554 669999987 4444 22211   112346889999997   444444332    3    56


Q ss_pred             EEEEEccCC--c-----EE-EEEeecCCCceEEEEEecCCCcceEEEEEeeC------------CCcEEEEEECCCC---
Q 024868          178 ARIWKTEDG--V-----AW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG------------DKALLAVYDISTW---  234 (261)
Q Consensus       178 i~iwd~~~~--~-----~~-~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~------------~d~~i~~~d~~~~---  234 (261)
                      |..|+...+  .     .+ ..+..........++|.|||.. |+   ..+.            ..|.|.-++....   
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~L-yv---t~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~  182 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGML-YI---TTGDAADPRLAQDLSSLAGKILRVDEEGRPPA  182 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCE-EE---ECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcE-EE---EECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence            777776643  1     11 1122111112567999999974 31   2221            1256666665421   


Q ss_pred             ------eEEeeeeccCcCeeEEEEee-CCCEEe
Q 024868          235 ------NKIGHKRLLRKPASVLSISL-DGKYLA  260 (261)
Q Consensus       235 ------~~~~~~~~~~~~v~~~~~s~-dg~~la  260 (261)
                            ..+ ....+ .....++|+| +|++.+
T Consensus       183 ~npf~~~~i-~a~G~-rnp~Gla~d~~~g~l~v  213 (354)
T 3a9g_A          183 DNPFPNSPI-WSYGH-RNPQGIDWHRASGVMVA  213 (354)
T ss_dssp             TSSSTTCCE-EEECC-SCCCEEEECTTTCCEEE
T ss_pred             CCCCCCCcE-EEEcc-CCcceEEEeCCCCCEEE
Confidence                  011 11222 2346899999 677654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.73  E-value=0.0079  Score=45.52  Aligned_cols=193  Identities=10%  Similarity=0.047  Sum_probs=96.0

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC------CcEEEEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEV   92 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~~~   92 (261)
                      ..+++.||.+.    ...-.++.||+.+..+...    ..++........+.+  +++.++.|+.+      ..+.+||.
T Consensus        56 ~~lyv~GG~~~----~~~~~~~~~d~~~~~W~~~----~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~  125 (306)
T 3ii7_A           56 NVVYILGGSQL----FPIKRMDCYNVVKDSWYSK----LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDT  125 (306)
T ss_dssp             TEEEEECCBSS----SBCCEEEEEETTTTEEEEE----ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEET
T ss_pred             CEEEEEeCCCC----CCcceEEEEeCCCCeEEEC----CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeC
Confidence            45677777541    1122688899988776221    112222222222333  56677777654      45788887


Q ss_pred             eCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---------CCeEEEEEccCceEEeeccccCC-ceeEEEE
Q 024868           93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLRIMHWPSLRIILDEPKAHK-SVLDMDF  162 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~  162 (261)
                      .+..-  ...    ..+.....-.++ ..-+++.++.|+.         -..+.+||..+.+-......... .-.++..
T Consensus       126 ~~~~W--~~~----~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  198 (306)
T 3ii7_A          126 RTESW--HTK----PSMLTQRCSHGM-VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF  198 (306)
T ss_dssp             TTTEE--EEE----CCCSSCCBSCEE-EEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             CCCce--EeC----CCCcCCcceeEE-EEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE
Confidence            76542  111    111111111112 2236777777763         34588999887653221111111 1122222


Q ss_pred             cCCCCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEEECC
Q 024868          163 SLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDIS  232 (261)
Q Consensus       163 s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~d~~  232 (261)
                      . ++++++.|+.+     ..+.+||+.+.+-...-.......-.+++.. +++.     .+.++.     -..+.+||..
T Consensus       199 ~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i-----~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          199 V-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIV-----YVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             E-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEE-----EEEECBCSSSBCCEEEEEETT
T ss_pred             E-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEE-----EEEeCcCCCeeeeeEEEEcCC
Confidence            2 67777777653     4688999987654332111111111122222 4443     244442     2579999998


Q ss_pred             CCe
Q 024868          233 TWN  235 (261)
Q Consensus       233 ~~~  235 (261)
                      +.+
T Consensus       272 ~~~  274 (306)
T 3ii7_A          272 TDK  274 (306)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.71  E-value=0.0086  Score=45.42  Aligned_cols=192  Identities=13%  Similarity=0.083  Sum_probs=93.9

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec----C-----CcEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----N-----GGCKL   89 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~i   89 (261)
                      ..+++.||..+  ..  .-.++.||+.+..+...+    .++........+.+  ++..++.|+.    +     ..+.+
T Consensus        25 ~~i~v~GG~~~--~~--~~~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~   94 (308)
T 1zgk_A           25 RLIYTAGGYFR--QS--LSYLEAYNPSNGTWLRLA----DLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDC   94 (308)
T ss_dssp             CCEEEECCBSS--SB--CCCEEEEETTTTEEEECC----CCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEE
T ss_pred             CEEEEEeCcCC--CC--cceEEEEcCCCCeEeECC----CCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEE
Confidence            45777777522  11  125788999887763321    11111111122222  5666677665    2     45777


Q ss_pred             EEEeCCccccceeeeeCCCCCC-CCCeEEEEEeeCCcEEEEeccC-----CeEEEEEccCceEEeeccccCC-ceeEEEE
Q 024868           90 FEVYGGATDINLLAKKMPPLQD-AGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHK-SVLDMDF  162 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~  162 (261)
                      ||..+..-  ..    ...+.. .......  .-+++.++.|+.+     ..+.+||..+.+-......... .-.+++.
T Consensus        95 ~d~~~~~W--~~----~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  166 (308)
T 1zgk_A           95 YNPMTNQW--SP----CAPMSVPRNRIGVG--VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV  166 (308)
T ss_dssp             EETTTTEE--EE----CCCCSSCCBTCEEE--EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             ECCCCCeE--eE----CCCCCcCccccEEE--EECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence            88766542  11    111111 1111222  2377888887643     3588899877653221111111 1112222


Q ss_pred             cCCCCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECC
Q 024868          163 SLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDIS  232 (261)
Q Consensus       163 s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~  232 (261)
                      . ++++++.|+.+     ..+.+||+.+.+-...-.......-.+++.. +++. |    +.++.+     ..+.+||+.
T Consensus       167 ~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i-y----v~GG~~~~~~~~~v~~yd~~  239 (308)
T 1zgk_A          167 L-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCI-Y----AAGGYDGQDQLNSVERYDVE  239 (308)
T ss_dssp             E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEE-E----EECCBCSSSBCCCEEEEETT
T ss_pred             E-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEE-E----EEeCCCCCCccceEEEEeCC
Confidence            2 67777777654     4588999887654322111111111122222 4443 2    344432     469999998


Q ss_pred             CCe
Q 024868          233 TWN  235 (261)
Q Consensus       233 ~~~  235 (261)
                      +.+
T Consensus       240 ~~~  242 (308)
T 1zgk_A          240 TET  242 (308)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.66  E-value=0.012  Score=45.52  Aligned_cols=231  Identities=13%  Similarity=0.020  Sum_probs=114.1

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEE--eeecCCCCCceEEEECCC---CCeEEEE
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT--YVFDESEGDPMTIAVNPS---GDDFVCS   81 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~---~~~l~~~   81 (261)
                      ...++|.|+   ..++++-...+        +|+.++..++...  ....  ............++++|+   +..|...
T Consensus        34 P~~ia~~pd---G~llVter~~G--------~I~~v~~~~g~~~--~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           34 PWGLAPLPG---GDLLVSSRDEA--------TITRVDAKTGRKT--ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             EEEEEECTT---SCEEEEETTTC--------EEEEECTTTCCEE--EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             ceEEEEcCC---CcEEEEEecCC--------EEEEEECCCCcEe--eecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            356677775   34555554467        8888887654421  0000  011223456889999995   3344332


Q ss_pred             -e--cCCcEEEEEEeCCc----c---ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc-------------CCeEEE
Q 024868           82 -T--TNGGCKLFEVYGGA----T---DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-------------DGHLRI  138 (261)
Q Consensus        82 -~--~dg~i~i~~~~~~~----~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------d~~i~~  138 (261)
                       +  .++.|.-|.+....    .   ...++.. ... .....-..|.|.|||.++++.+.             .|.|.-
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~-~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlR  178 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRG-IPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILR  178 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEE-ECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEc-CCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEE
Confidence             2  34456666665421    0   1111111 111 11223467999999987777542             244444


Q ss_pred             EEccCceE--------EeeccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCc------------------EEEE
Q 024868          139 MHWPSLRI--------ILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGV------------------AWTF  191 (261)
Q Consensus       139 ~d~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~------------------~~~~  191 (261)
                      .+.. ++.        ...+.........++|+|+|++.++-. .|+.-.|--+..+.                  ++..
T Consensus       179 i~~d-G~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~  257 (347)
T 3das_A          179 MTPD-GEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ  257 (347)
T ss_dssp             ECTT-SSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred             EeCC-CCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence            4433 210        001111223467899999887666532 23322222222221                  1222


Q ss_pred             EeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE----EeeeeccCcCeeEEEEeeCCCEEe
Q 024868          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       192 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +..++. ....++|. +|..     +...-..+.|....+.....    ...+......+.+++..|||.+++
T Consensus       258 ~~~~~~-ap~G~~~~-~g~~-----~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv  323 (347)
T 3das_A          258 WSTDEA-SPSGIAYA-EGSV-----WMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWL  323 (347)
T ss_dssp             ECTTTC-CEEEEEEE-TTEE-----EEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEE
T ss_pred             cCCCCC-CCcceEEE-cCce-----eeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEE
Confidence            221111 25567776 3443     23333444566666654432    112223346789999999998654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.64  E-value=0.0061  Score=46.23  Aligned_cols=158  Identities=11%  Similarity=0.044  Sum_probs=87.1

Q ss_pred             CCCCCeEEEEec--CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--------------Ce
Q 024868           72 NPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------------GH  135 (261)
Q Consensus        72 ~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------~~  135 (261)
                      ++++.+|.....  ++.|+..+.+....  ..+..          -.+--+++++.+|+.+...              ..
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~--~~l~~----------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~   89 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSNI--HKLSN----------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNS   89 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCSC--EEEEE----------EEEEEEEECSSEEEEEEECC------CCSSCCSEE
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCCC--EEccC----------CceeeEEEcCCEEEEEECCCCcccccceeccCCCe
Confidence            346777776643  34455555443321  11111          1223468899998887643              35


Q ss_pred             EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CC--CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TD--GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      |+..++...+... +..  .  ....|++++++|+-..  .+  ..|+..++...+ ...+..+.   +  ..|+|+++.
T Consensus        90 Iy~i~~dg~~~~~-l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~---~--~~~~~~g~~  158 (302)
T 3s25_A           90 LCRIKRNGHGSTV-LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHY---L--FTCNTSDRY  158 (302)
T ss_dssp             EEEEETTSCCCEE-EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSC---C--CCSEEETTE
T ss_pred             EEEEeCCCCcceE-eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCC---c--eEeeEECCE
Confidence            6777766554322 211  1  2236788899888765  33  455555655333 34444322   2  457889998


Q ss_pred             ceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       212 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      +|    .+.....+|++.++..+.......   +... ..++|++++|+
T Consensus       159 iy----~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy  199 (302)
T 3s25_A          159 FY----YNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVY  199 (302)
T ss_dssp             EE----EECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEE
T ss_pred             EE----EEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEE
Confidence            43    333346789999987765432222   2222 34668888875

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.63  E-value=0.014  Score=46.09  Aligned_cols=116  Identities=17%  Similarity=0.188  Sum_probs=75.7

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccc---------eeeeeCCCCC--CCCCeEEEEEeeC---CcEEEEe
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN---------LLAKKMPPLQ--DAGPQKCLSFSVD---GSRFAAG  130 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---------~~~~~~~~~~--~~~~v~~~~~s~~---~~~l~~~  130 (261)
                      .+..+..+|+|++||..+. ..|.|-.+..+.....         ...-......  ...+|..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            6888999999999988754 4699999874321110         0000111111  2578999999994   4578888


Q ss_pred             ccCCeEEEEEccCce--EE-e-------eccccCCceeEEEEcCCCCEEEE--ecCCCcEEEE
Q 024868          131 GVDGHLRIMHWPSLR--II-L-------DEPKAHKSVLDMDFSLDSEFLAT--TSTDGSARIW  181 (261)
Q Consensus       131 ~~d~~i~~~d~~~~~--~~-~-------~~~~~~~~v~~~~~s~~~~~l~~--~~~d~~i~iw  181 (261)
                      ..|+.|++||+....  +. .       ........|.+++|.+++-.|+.  .+.+|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            899999999997521  11 0       00111146889999998876766  4477876643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.63  E-value=0.0021  Score=49.96  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=57.4

Q ss_pred             CeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--Eeecc---ccCCceeEEEEcCC---CCEEEEecC-C-----CcEE
Q 024868          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEP---KAHKSVLDMDFSLD---SEFLATTST-D-----GSAR  179 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~---~~~~~v~~~~~s~~---~~~l~~~~~-d-----~~i~  179 (261)
                      ....++|.|+|+++++ ..++.|++++  +++.  +....   ........++++|+   +..|+.+.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4678999999986555 4669999998  3332  11111   12346889999998   555544332 2     5688


Q ss_pred             EEEccCCcE-----EE-EEee--cCCCceEEEEEecCCCc
Q 024868          180 IWKTEDGVA-----WT-FLTR--NSDEKIELCRFSKDGTK  211 (261)
Q Consensus       180 iwd~~~~~~-----~~-~~~~--~~~~~v~~~~~~p~~~~  211 (261)
                      .|+...++.     +. .+..  ........++|.|||..
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~L  148 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGML  148 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCE
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCE
Confidence            888764421     11 1221  11112468999999964

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.61  E-value=0.012  Score=44.54  Aligned_cols=182  Identities=9%  Similarity=0.083  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC--------------cEEEEEEeCCccccceee
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG--------------GCKLFEVYGGATDINLLA  103 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~i~~~~~~~~~~~~~~  103 (261)
                      .|+..+.+....      .....   +.  +--+++++++|+......              .|+..++.+...  ..+.
T Consensus        38 ~ly~~~~dg~~~------~~l~~---~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l~  104 (302)
T 3s25_A           38 RLYAMNIDGSNI------HKLSN---DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVLD  104 (302)
T ss_dssp             EEEEEETTSCSC------EEEEE---EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEEE
T ss_pred             eEEEEcCCCCCC------EEccC---Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEee
Confidence            788888776553      11111   11  234578899988776532              445555544431  1111


Q ss_pred             eeCCCCCCCCCeEEEEEeeCCcEEEEec--cC--CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CCcE
Q 024868          104 KKMPPLQDAGPQKCLSFSVDGSRFAAGG--VD--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSA  178 (261)
Q Consensus       104 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i  178 (261)
                              ..  ....|++++++|+...  .+  ..|+..++..... ..+..+..    ..++|+++.|+..+. ..+|
T Consensus       105 --------~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~I  169 (302)
T 3s25_A          105 --------PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQL  169 (302)
T ss_dssp             --------CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred             --------cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence                    11  2247889999888775  23  3455556553332 22322222    456888888886665 5778


Q ss_pred             EEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCE
Q 024868          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY  258 (261)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~  258 (261)
                      ...++..+.....+.   . ... ..++|++.+++.   ........|..-++...... .+.  ...+  ..|+|+|++
T Consensus       170 y~~~l~g~~~~~l~~---~-~~~-~~~~P~g~~iy~---t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~  236 (302)
T 3s25_A          170 YRYDTASQSEALFYD---C-NCY-KPVVLDDTNVYY---MDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSL  236 (302)
T ss_dssp             EEEETTTTEEEEEEC---S-CEE-EEEEEETTEEEE---EEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTE
T ss_pred             EEEECCCCCEEEEeC---C-Ccc-ceeeecCCEEEE---EEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCE
Confidence            888877655443322   2 122 346699998432   12222246777777655432 222  1222  347777776


Q ss_pred             Ee
Q 024868          259 LA  260 (261)
Q Consensus       259 la  260 (261)
                      |.
T Consensus       237 Iy  238 (302)
T 3s25_A          237 IF  238 (302)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.53  E-value=0.0032  Score=44.91  Aligned_cols=139  Identities=12%  Similarity=-0.003  Sum_probs=74.3

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCC--CCCCeEEEEEeeCCcEEEEeccCCeEEEEEcc
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ--DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~  142 (261)
                      .+..++|+|+|.+.++  .+|.++-.+..+...  .........+.  .-.....+.|.|+|.+.++  .||.|+-++-.
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN--DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTT--CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCc--ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            6779999999986666  677655544432211  00000000000  0011367889999988877  56988888753


Q ss_pred             CceEE-e----eccc--cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCc------EEEEEeecCCCceEEEEEecCC
Q 024868          143 SLRII-L----DEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV------AWTFLTRNSDEKIELCRFSKDG  209 (261)
Q Consensus       143 ~~~~~-~----~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~p~~  209 (261)
                      +.... .    ....  .-..+..+.+.|+|.+.+..  |+.++-....++.      ....+-...-..-+.+.|.|++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            32110 0    0011  11368999999999977776  6764432222111      0111110111124556688888


Q ss_pred             Cc
Q 024868          210 TK  211 (261)
Q Consensus       210 ~~  211 (261)
                      ..
T Consensus       194 ~l  195 (236)
T 1tl2_A          194 TL  195 (236)
T ss_dssp             CE
T ss_pred             cE
Confidence            75

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.52  E-value=0.0073  Score=46.61  Aligned_cols=142  Identities=8%  Similarity=-0.018  Sum_probs=79.8

Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE--eec----cccCCceeEEEEcCC---CCEEEEe---cCCCcEEE
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDE----PKAHKSVLDMDFSLD---SEFLATT---STDGSARI  180 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~----~~~~~~v~~~~~s~~---~~~l~~~---~~d~~i~i  180 (261)
                      .....|+|.|||+++++-...|.|++++...++..  ...    .........++++|+   +..|+..   ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            35688999999998777755899999986554432  111    122346889999995   3344432   23455666


Q ss_pred             EEccCC----------cEEE-EEeecCCCceEEEEEecCCCcceEEEEEeeC------------CCcEEEEEECCCC---
Q 024868          181 WKTEDG----------VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRG------------DKALLAVYDISTW---  234 (261)
Q Consensus       181 wd~~~~----------~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~------------~d~~i~~~d~~~~---  234 (261)
                      |.+..+          +.+. .+..........+.|.|||.. |   +..+.            ..|.|.-++....   
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~L-y---vt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~  187 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKML-Y---AGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP  187 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCE-E---EECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCE-E---EEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence            665541          1111 122111123567999999974 3   23221            2355555555421   


Q ss_pred             ------eEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          235 ------NKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       235 ------~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                            ..+ ...++ .....++|+|+|++.+
T Consensus       188 ~nPf~~~~i-~a~G~-RNp~Gla~dp~G~L~~  217 (347)
T 3das_A          188 GNPFPGSPV-YSYGH-RNVQGLAWDDKQRLFA  217 (347)
T ss_dssp             TCSSTTCCE-EEBCC-SBCCEEEECTTCCEEE
T ss_pred             CCCCCCCeE-EeeCC-CCcceEEECCCCCEEE
Confidence                  111 11223 2346899999987654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.51  E-value=0.013  Score=47.24  Aligned_cols=99  Identities=13%  Similarity=0.174  Sum_probs=57.7

Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE--eeccc------cCCceeEEEEcCC---CCEEEEecC-------
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDEPK------AHKSVLDMDFSLD---SEFLATTST-------  174 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~------~~~~v~~~~~s~~---~~~l~~~~~-------  174 (261)
                      .....|+|.|+|+++++-...+.|++++..+++..  ..+..      .......|+|+|+   +..|+....       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            34678999999997777644457888876544332  22211      2346789999995   554544331       


Q ss_pred             ------CCcEEEEEccCC--c-----EEE-EEeecCCCceEEEEEecCCCc
Q 024868          175 ------DGSARIWKTEDG--V-----AWT-FLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       175 ------d~~i~iwd~~~~--~-----~~~-~~~~~~~~~v~~~~~~p~~~~  211 (261)
                            ...|.-|+...+  +     .+. .+..........++|.|||..
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L  157 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI  157 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCE
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeE
Confidence                  134555665432  1     111 122111224788999999975

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.49  E-value=0.019  Score=43.54  Aligned_cols=178  Identities=12%  Similarity=0.063  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEEEEeCCccccceeeeeCCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDA  112 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~  112 (261)
                      .++.||+.+..+...+    .++........+.+  +++.++.|+.+     ..+.+||..+..-  ..    ...+...
T Consensus        91 ~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~----~~~~p~~  158 (308)
T 1zgk_A           91 ALDCYNPMTNQWSPCA----PMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW--HL----VAPMLTR  158 (308)
T ss_dssp             CEEEEETTTTEEEECC----CCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE--EE----CCCCSSC
T ss_pred             eEEEECCCCCeEeECC----CCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE--eE----CCCCCcc
Confidence            5788898887763221    12211112222333  56667776643     3577788766542  11    1111111


Q ss_pred             CCeEEEEEeeCCcEEEEeccC-----CeEEEEEccCceEEeeccccCC-ceeEEEEcCCCCEEEEecCC-----CcEEEE
Q 024868          113 GPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTD-----GSARIW  181 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-----~~i~iw  181 (261)
                      ..-.++. .-+++.++.|+.+     ..+..||+.+.+-......... .-.++... ++++++.|+.+     ..+.+|
T Consensus       159 r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          159 RIGVGVA-VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             CBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEE
T ss_pred             ccceEEE-EECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEE
Confidence            1111122 2267788887754     4588999877653221111111 11222222 67777777654     568999


Q ss_pred             EccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEEECCCCe
Q 024868          182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWN  235 (261)
Q Consensus       182 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~d~~~~~  235 (261)
                      |+.+.+-...-.......-.+++. -+++. |    +.++.     -..+.+||+.+.+
T Consensus       237 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-~----v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          237 DVETETWTFVAPMKHRRSALGITV-HQGRI-Y----VLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEE-ETTEE-E----EECCBCSSCBCCEEEEEETTTTE
T ss_pred             eCCCCcEEECCCCCCCccceEEEE-ECCEE-E----EEcCcCCCcccceEEEEcCCCCE
Confidence            998765433211111111112222 24543 2    34442     2468899998765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.47  E-value=0.019  Score=43.28  Aligned_cols=194  Identities=13%  Similarity=0.088  Sum_probs=96.0

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCc---eecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTS---VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLF   90 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~   90 (261)
                      ..+++.||.++.   ...-.++.||+.+..   +...    ..++........+.+  +++.++.|+.+     ..+.+|
T Consensus        63 ~~l~v~GG~~~~---~~~~~~~~~d~~~~~~~~W~~~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~  133 (301)
T 2vpj_A           63 DRIYVIGGYDGR---SRLSSVECLDYTADEDGVWYSV----APMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERY  133 (301)
T ss_dssp             TEEEEECCBCSS---CBCCCEEEEETTCCTTCCCEEE----CCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEE
T ss_pred             CEEEEEcCCCCC---ccCceEEEEECCCCCCCeeEEC----CCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEE
Confidence            456777775531   112257888887766   4221    112222222222333  56667777654     357777


Q ss_pred             EEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-----CeEEEEEccCceEEeeccccCC-ceeEEEEcC
Q 024868           91 EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSL  164 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~  164 (261)
                      |..+..-  .....    +... .........+++.++.|+.+     ..+..||+.+.+-......... .-.++.. -
T Consensus       134 d~~~~~W--~~~~~----~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~  205 (301)
T 2vpj_A          134 DPNIDQW--SMLGD----MQTA-REGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-L  205 (301)
T ss_dssp             ETTTTEE--EEEEE----CSSC-CBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E
T ss_pred             cCCCCeE--EECCC----CCCC-cccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-E
Confidence            7765542  11111    1111 11111222378888888754     4588999877653222111111 1112222 2


Q ss_pred             CCCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCCC
Q 024868          165 DSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTW  234 (261)
Q Consensus       165 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~~  234 (261)
                      ++++++.|+.+     ..+.+||+.+.+-...-.......-.++ ..-+++.     .+.++.+     ..+.+||.++.
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i-----~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGA-TVLRGRL-----YAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEE-----EEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeE-EEECCEE-----EEEcCcCCCcccccEEEEcCCCC
Confidence            57777777754     4689999987765433221111111122 2235553     2444433     57899999875


Q ss_pred             e
Q 024868          235 N  235 (261)
Q Consensus       235 ~  235 (261)
                      +
T Consensus       280 ~  280 (301)
T 2vpj_A          280 S  280 (301)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.47  E-value=0.019  Score=43.30  Aligned_cols=195  Identities=14%  Similarity=0.132  Sum_probs=95.4

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-----cEEEEEEe
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVY   93 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~   93 (261)
                      ..+++.||.++..   ..-.++.||+.+..+...+    .++........+.+  +++.++.|+.++     .+.+||..
T Consensus        62 ~~lyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~  132 (302)
T 2xn4_A           62 GLVFAVGGFNGSL---RVRTVDSYDPVKDQWTSVA----NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIK  132 (302)
T ss_dssp             TEEEEESCBCSSS---BCCCEEEEETTTTEEEEEC----CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETT
T ss_pred             CEEEEEeCcCCCc---cccceEEECCCCCceeeCC----CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCC
Confidence            4567777754421   1125788999887763211    12211122222223  566777776553     46666665


Q ss_pred             CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-------CeEEEEEccCceEEeeccccCC-ceeEEEEcCC
Q 024868           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLD  165 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~  165 (261)
                      +..-  ...    ..+.....-.++ ..-+++.++.|+.+       ..+..||+.+.+-......... .-.++.. -+
T Consensus       133 ~~~W--~~~----~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~  204 (302)
T 2xn4_A          133 SNEW--FHV----APMNTRRSSVGV-GVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LN  204 (302)
T ss_dssp             TTEE--EEE----CCCSSCCBSCEE-EEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET
T ss_pred             CCeE--eec----CCCCCcccCceE-EEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-EC
Confidence            5432  111    111111111112 22367777777642       3588999877653221111111 1122222 26


Q ss_pred             CCEEEEecCC-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCCCe
Q 024868          166 SEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWN  235 (261)
Q Consensus       166 ~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~  235 (261)
                      +++++.|+.+     ..+.+||+.+.+-...-.......-..++ .-+++.     .+.++.+     ..+.+||..+.+
T Consensus       205 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i-----~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          205 NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLL-----YVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEE-----EEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEE-----EEECCcCCCcccccEEEEcCCCCe
Confidence            7777787754     46889999877644322111111111222 235553     2444433     358999998765


Q ss_pred             E
Q 024868          236 K  236 (261)
Q Consensus       236 ~  236 (261)
                      -
T Consensus       279 W  279 (302)
T 2xn4_A          279 W  279 (302)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.44  E-value=0.018  Score=44.64  Aligned_cols=146  Identities=8%  Similarity=0.018  Sum_probs=76.1

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC---CcEEEEec-c-------
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGG-V-------  132 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~-~-------  132 (261)
                      .....++|.|+|+.|+++...|.|++++.. +......................++++|+   +..|.+.. .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            357899999999844455678888888743 22110000000011122346789999995   44444432 2       


Q ss_pred             CCeEEEEEccCc-------eEEeeccc----cCCceeEEEEcCCCCEEEEecCC-------------CcEEEEEccCC--
Q 024868          133 DGHLRIMHWPSL-------RIILDEPK----AHKSVLDMDFSLDSEFLATTSTD-------------GSARIWKTEDG--  186 (261)
Q Consensus       133 d~~i~~~d~~~~-------~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d-------------~~i~iwd~~~~--  186 (261)
                      ...|..+++...       +.+.....    .......+.|.|||.+.++.+..             +.|.-++....  
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            234666665432       11111111    11124679999999766665432             34655665421  


Q ss_pred             ----------cEEEEEeecCCCceEEEEEec-CCCc
Q 024868          187 ----------VAWTFLTRNSDEKIELCRFSK-DGTK  211 (261)
Q Consensus       187 ----------~~~~~~~~~~~~~v~~~~~~p-~~~~  211 (261)
                                .....+..... ....++|+| +|+.
T Consensus       177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l  211 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNAL  211 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEE
T ss_pred             CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCE
Confidence                      01122222222 378899999 5553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.44  E-value=0.022  Score=43.25  Aligned_cols=188  Identities=14%  Similarity=0.096  Sum_probs=93.5

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-----C--C----cE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-----N--G----GC   87 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d--g----~i   87 (261)
                      +.+++.|+  .        .++.||+.+..+..     ..++.............+++.++.|+.     .  .    .+
T Consensus         5 ~~l~~~GG--~--------~~~~yd~~~~~W~~-----~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~   69 (315)
T 4asc_A            5 DLIFMISE--E--------GAVAYDPAANECYC-----ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYF   69 (315)
T ss_dssp             EEEEEEET--T--------EEEEEETTTTEEEE-----EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEE
T ss_pred             eEEEEEcC--C--------ceEEECCCCCeEec-----CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccce
Confidence            34666776  3        79999999988732     222222233333344457777777773     1  1    25


Q ss_pred             EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC--------CeEEEEEccCceEEeeccccCCc-ee
Q 024868           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWPSLRIILDEPKAHKS-VL  158 (261)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~-v~  158 (261)
                      ..||..+..-  ..    ...+.....-.++ ..-+++.++.|+.+        ..+.+||..+.+-.......... -.
T Consensus        70 ~~~d~~~~~W--~~----~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  142 (315)
T 4asc_A           70 LQFDHLDSEW--LG----MPPLPSPRCLFGL-GEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH  142 (315)
T ss_dssp             EEEETTTTEE--EE----CCCBSSCEESCEE-EEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred             EEecCCCCeE--EE----CCCCCcchhceeE-EEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce
Confidence            5666655432  11    1111111000111 12267777777732        35889998876532211111111 12


Q ss_pred             EEEEcCCCCEEEEecC-C-----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEE
Q 024868          159 DMDFSLDSEFLATTST-D-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLA  227 (261)
Q Consensus       159 ~~~~s~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~  227 (261)
                      +++ .-++++++.|+. +     ..+.+||..+.+-...-.......-.+++ .-+++. |    +.++.+     ..+.
T Consensus       143 ~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i-y----v~GG~~~~~~~~~~~  215 (315)
T 4asc_A          143 TVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRI-I----VAAGVTDTGLTSSAE  215 (315)
T ss_dssp             EEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEE-E----EEEEECSSSEEEEEE
T ss_pred             eEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEE-E----EEeccCCCCccceEE
Confidence            222 246677777775 2     46899999876543321111111111222 224543 3    333322     3689


Q ss_pred             EEECCCCe
Q 024868          228 VYDISTWN  235 (261)
Q Consensus       228 ~~d~~~~~  235 (261)
                      +||..+.+
T Consensus       216 ~yd~~~~~  223 (315)
T 4asc_A          216 VYSITDNK  223 (315)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCe
Confidence            99998764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.39  E-value=0.025  Score=42.93  Aligned_cols=139  Identities=10%  Similarity=0.042  Sum_probs=71.0

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC--------CcEEEEEEeCCccccceeeeeCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--------GGCKLFEVYGGATDINLLAKKMPPL  109 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~~~~~~~~~~~~~~~~~~~~  109 (261)
                      .++.||+.+..+...+.    ++........+.+  +++.++.|+.+        ..+.+||..+..-  ..    ...+
T Consensus        68 ~~~~~d~~~~~W~~~~~----~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W--~~----~~~~  135 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPP----LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW--GE----SDPL  135 (315)
T ss_dssp             EEEEEETTTTEEEECCC----BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE--EE----CCCC
T ss_pred             ceEEecCCCCeEEECCC----CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE--eE----CCCC
Confidence            38899998877632211    1111111122222  56666666632        4578888776542  11    1111


Q ss_pred             CCCCCeEEEEEeeCCcEEEEecc-C-----CeEEEEEccCceEEeeccccCCc-eeEEEEcCCCCEEEEecCCC-----c
Q 024868          110 QDAGPQKCLSFSVDGSRFAAGGV-D-----GHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTDG-----S  177 (261)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~-d-----~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d~-----~  177 (261)
                      ... .....+...+++.++.|+. +     ..+.+||..+.+-.......... -.++.. -++++++.|+.++     .
T Consensus       136 p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~  213 (315)
T 4asc_A          136 PYV-VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSS  213 (315)
T ss_dssp             SSC-CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEE
T ss_pred             CCc-ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccce
Confidence            111 1111222356778888875 2     46899998776532211111111 122222 2677777777654     5


Q ss_pred             EEEEEccCCcEEE
Q 024868          178 ARIWKTEDGVAWT  190 (261)
Q Consensus       178 i~iwd~~~~~~~~  190 (261)
                      +.+||+.+.+-..
T Consensus       214 ~~~yd~~~~~W~~  226 (315)
T 4asc_A          214 AEVYSITDNKWAP  226 (315)
T ss_dssp             EEEEETTTTEEEE
T ss_pred             EEEEECCCCeEEE
Confidence            8889998775443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.36  E-value=0.0016  Score=46.47  Aligned_cols=137  Identities=10%  Similarity=-0.059  Sum_probs=76.2

Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-----eecccc--CCceeEEEEcCCCCEEEEecCCCcEEEEEccC
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----LDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~  185 (261)
                      ..+..++|+|+|.+.++  .+|.++-.+..+.+..     ......  -.....+.|.|+|.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            36679999999987777  7887777665442210     001111  112478999999987777  458887776533


Q ss_pred             CcEE------EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE------Eeeee-ccCcCeeEEEE
Q 024868          186 GVAW------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------IGHKR-LLRKPASVLSI  252 (261)
Q Consensus       186 ~~~~------~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~------~~~~~-~~~~~v~~~~~  252 (261)
                      ....      ..+-...-..+..+.|.|+|..      .... |+.++-....+...      ...+. ..-.....+.|
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L------yav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f  189 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYL------YAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF  189 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCE------EEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceE------EEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence            2111      1111111124789999999985      3333 66654433332110      01111 11123445678


Q ss_pred             eeCCCEEe
Q 024868          253 SLDGKYLA  260 (261)
Q Consensus       253 s~dg~~la  260 (261)
                      +++|...+
T Consensus       190 ~~~G~l~~  197 (236)
T 1tl2_A          190 SSVGTLFG  197 (236)
T ss_dssp             CTTSCEEE
T ss_pred             CCCCcEEE
Confidence            88887665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.31  E-value=0.03  Score=42.15  Aligned_cols=193  Identities=13%  Similarity=0.129  Sum_probs=93.9

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-----CcEEEEEEe
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVY   93 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~   93 (261)
                      ..+++.||.+..    ..-.++.||+.+..+...    ..++.....-..+.+  ++..++.|+.+     ..+.+||..
T Consensus        16 ~~i~v~GG~~~~----~~~~~~~~d~~~~~W~~~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~   85 (302)
T 2xn4_A           16 KLMVVVGGQAPK----AIRSVECYDFKEERWHQV----AELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPV   85 (302)
T ss_dssp             EEEEEECCBSSS----BCCCEEEEETTTTEEEEE----CCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETT
T ss_pred             CEEEEECCCCCC----CCCcEEEEcCcCCcEeEc----ccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCC
Confidence            457777775431    112478889888765221    112211111122222  56667777654     357778776


Q ss_pred             CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-----eEEEEEccCceEEeeccccCC-ceeEEEEcCCCC
Q 024868           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSE  167 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~  167 (261)
                      +..-  ...    ..+.....-.++ ..-+++.++.|+.++     .+.+||..+.+-......... .-.+++. -+++
T Consensus        86 ~~~W--~~~----~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~  157 (302)
T 2xn4_A           86 KDQW--TSV----ANMRDRRSTLGA-AVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGL  157 (302)
T ss_dssp             TTEE--EEE----CCCSSCCBSCEE-EEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE
T ss_pred             CCce--eeC----CCCCccccceEE-EEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCE
Confidence            6542  111    111111111112 223677888887553     578888877653221111111 1122222 2567


Q ss_pred             EEEEecCC-------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCCCe
Q 024868          168 FLATTSTD-------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWN  235 (261)
Q Consensus       168 ~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~  235 (261)
                      +++.|+.+       ..+.+||+.+.+-...-.......-.+++. -+++. |    +.++.+     ..+.+||..+.+
T Consensus       158 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-y----v~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLL-Y----AVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE-E----EECCBSSSSBCCCEEEEETTTTE
T ss_pred             EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEE-E----EECCCCCCcccceEEEEeCCCCC
Confidence            77776642       358899998776443321111111112222 24443 2    444432     469999998765

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.28  E-value=0.049  Score=43.87  Aligned_cols=110  Identities=11%  Similarity=0.118  Sum_probs=60.0

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC---CCCCCeEEEEEeeC---CcEEEEecc----
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL---QDAGPQKCLSFSVD---GSRFAAGGV----  132 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~---~~~l~~~~~----  132 (261)
                      -.....++|.|+|+.+++-...+.|++++..++... . +......+   ........++|+|+   +..|.++..    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-T-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-E-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-E-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            346779999999986665433346777765433321 1 11111111   13456789999995   444444432    


Q ss_pred             ---------CCeEEEEEccCc-------eEEee-ccc-cCCceeEEEEcCCCCEEEEecC
Q 024868          133 ---------DGHLRIMHWPSL-------RIILD-EPK-AHKSVLDMDFSLDSEFLATTST  174 (261)
Q Consensus       133 ---------d~~i~~~d~~~~-------~~~~~-~~~-~~~~v~~~~~s~~~~~l~~~~~  174 (261)
                               ...|.-++....       +.+.. +.. .......+.|.|||.+.++.+.
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                     234555554321       11221 111 1124688999999987776543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.19  E-value=0.033  Score=42.38  Aligned_cols=138  Identities=10%  Similarity=0.030  Sum_probs=68.6

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-------CcEEEEEEeCCccccceeeeeCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-------GGCKLFEVYGGATDINLLAKKMPPLQ  110 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~~~~~~~~  110 (261)
                      .++.||+.+..+...+    .++........+.+  +++.++.|+.+       ..+.+||..+..-  ....    .+.
T Consensus        79 ~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~----~~p  146 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLP----PLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--SEVK----NLP  146 (318)
T ss_dssp             EEEEEETTTTEEEECS----CBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE--EEEC----CCS
T ss_pred             cEEEEeCCCCcEEECC----CCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE--eECC----CCC
Confidence            4888999887763321    12211112222223  56666777653       2466666655432  1111    111


Q ss_pred             CCCCeEEEEEeeCCcEEEEecc------CCeEEEEEccCceEEeeccccCC-ceeEEEEcCCCCEEEEecCC-----CcE
Q 024868          111 DAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTD-----GSA  178 (261)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-----~~i  178 (261)
                      .. .....+...+++.++.|+.      -..+.+||..+.+-......... .-.+++. -++++++.|+.+     ..+
T Consensus       147 ~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  224 (318)
T 2woz_A          147 IK-VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASV  224 (318)
T ss_dssp             SC-EESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEE
T ss_pred             Cc-ccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceE
Confidence            11 1111122257778888764      23589999887653221111111 1122222 257777777653     357


Q ss_pred             EEEEccCCcEE
Q 024868          179 RIWKTEDGVAW  189 (261)
Q Consensus       179 ~iwd~~~~~~~  189 (261)
                      .+||+.+.+-.
T Consensus       225 ~~yd~~~~~W~  235 (318)
T 2woz_A          225 EAFDLKTNKWE  235 (318)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEECCCCeEE
Confidence            78998876643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.18  E-value=0.024  Score=43.88  Aligned_cols=111  Identities=5%  Similarity=-0.043  Sum_probs=50.1

Q ss_pred             CCcEEEEecc------CCeEEEEEc--cCceEEe--eccccCCceeEEEEcCCCCEEEEecCC-----------------
Q 024868          123 DGSRFAAGGV------DGHLRIMHW--PSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTD-----------------  175 (261)
Q Consensus       123 ~~~~l~~~~~------d~~i~~~d~--~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------------  175 (261)
                      +++.++.|+.      ...+..||+  .+.+-..  .+..........+...++++++.|+.+                 
T Consensus       200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~  279 (357)
T 2uvk_A          200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE  279 (357)
T ss_dssp             TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred             CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence            6777777763      345777876  3332211  111111111212223367777777632                 


Q ss_pred             -----CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC------cEEEEEECCCCeEEee
Q 024868          176 -----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK------ALLAVYDISTWNKIGH  239 (261)
Q Consensus       176 -----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d------~~i~~~d~~~~~~~~~  239 (261)
                           ..+.+||+.+.+-...-..... .....+...+++. +    +.|+.+      ..+.++++++++.+..
T Consensus       280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i-~----v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          280 GLKKSYSTDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSL-L----IIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             TCCCEECCEEEECC---CEEEEECSSC-CBSSEEEEETTEE-E----EEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             cccceeeEEEEecCCCceeeCCCCCCC-cccceeEEeCCEE-E----EEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence                 2578899886654332211111 1112223345554 3    333322      3577778887776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.02  E-value=0.13  Score=43.89  Aligned_cols=202  Identities=10%  Similarity=0.045  Sum_probs=100.5

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeE--EeeecCCCCCceEEEECC-CCCeEEEEecC------CcEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLV--TYVFDESEGDPMTIAVNP-SGDDFVCSTTN------GGCKL   89 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i   89 (261)
                      ..+++.||.++  ...  -.++.||+.+..+...+..  ...++.. ..-.+++..+ +++.++.|+.+      ..+.+
T Consensus       398 ~~iyv~GG~~~--~~~--~~v~~yd~~~~~W~~~~~~~p~~~~p~~-R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~  472 (695)
T 2zwa_A          398 NDVFYMGGSNP--YRV--NEILQLSIHYDKIDMKNIEVSSSEVPVA-RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI  472 (695)
T ss_dssp             SCEEEECCBSS--SBC--CCEEEEEECSSCEEEEECCCCCSCCCCC-CBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred             CEEEEECCCCC--CCc--CcEEEEECCCCeEEEeccCCCCCCCCcc-ccceEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence            45667776544  111  2478888887766221100  0001111 1122333333 67777777654      34677


Q ss_pred             EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC--eEEEEEccCceEEeecc-----ccCCceeEEEE
Q 024868           90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEP-----KAHKSVLDMDF  162 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~  162 (261)
                      ||..+..-  ..    ...+.....-.+++.-.+++.++.|+.++  .+.+||..+..-.....     ........+.+
T Consensus       473 yd~~t~~W--~~----~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~  546 (695)
T 2zwa_A          473 FDMKTREW--SM----IKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEF  546 (695)
T ss_dssp             EETTTTEE--EE----CCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEE
T ss_pred             EeCCCCcE--EE----CCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEE
Confidence            77766432  11    11111111112222223788888887554  68999988765322111     11112233555


Q ss_pred             cCC-CCEEEEecC--C-----CcEEEEEccCCcE-----EEEEee--cCCCceEEEEEecCCCcceEEEEEeeCC-----
Q 024868          163 SLD-SEFLATTST--D-----GSARIWKTEDGVA-----WTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGD-----  222 (261)
Q Consensus       163 s~~-~~~l~~~~~--d-----~~i~iwd~~~~~~-----~~~~~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----  222 (261)
                      ..+ +++++.|+.  +     +.+.+||+.+.+.     -..+..  .....-.+++...+++. |    +.|+.     
T Consensus       547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i-y----v~GG~~~~~~  621 (695)
T 2zwa_A          547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL-L----IVGGTSPSGL  621 (695)
T ss_dssp             ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE-E----EECCBCSSCC
T ss_pred             eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE-E----EECCccCCCC
Confidence            655 667777765  2     3588999988761     122211  11111122333333554 2    33442     


Q ss_pred             ---CcEEEEEECCCCeE
Q 024868          223 ---KALLAVYDISTWNK  236 (261)
Q Consensus       223 ---d~~i~~~d~~~~~~  236 (261)
                         ...+.+||..+.+-
T Consensus       622 ~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          622 FDRTNSIISLDPLSETL  638 (695)
T ss_dssp             CCTTTSEEEEETTTTEE
T ss_pred             CCCCCeEEEEECCCCeE
Confidence               35699999987654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.01  E-value=0.07  Score=40.54  Aligned_cols=187  Identities=12%  Similarity=0.112  Sum_probs=90.8

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec----CC---c----EE
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NG---G----CK   88 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg---~----i~   88 (261)
                      .+++.|+.          .++.||+.+..+..     ..+..............++..++.|+.    ++   .    +.
T Consensus        17 ~i~~~GG~----------~~~~yd~~~~~W~~-----~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~   81 (318)
T 2woz_A           17 LILLVNDT----------AAVAYDPMENECYL-----TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFF   81 (318)
T ss_dssp             EEEEECSS----------EEEEEETTTTEEEE-----EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEE
T ss_pred             hhhhcccc----------ceEEECCCCCceec-----ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEE
Confidence            45666663          57899999888632     122221222233334457777777773    12   1    55


Q ss_pred             EEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-------CeEEEEEccCceEEeeccccCCc-eeEE
Q 024868           89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------GHLRIMHWPSLRIILDEPKAHKS-VLDM  160 (261)
Q Consensus        89 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~-v~~~  160 (261)
                      .||..+..-  ..    ...+.....-.++. .-+++.++.|+.+       ..+.+||..+.+-.......... -.++
T Consensus        82 ~~d~~~~~W--~~----~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  154 (318)
T 2woz_A           82 QLDNVSSEW--VG----LPPLPSARCLFGLG-EVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNV  154 (318)
T ss_dssp             EEETTTTEE--EE----CSCBSSCBCSCEEE-EETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEE
T ss_pred             EEeCCCCcE--EE----CCCCCccccccceE-EECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEE
Confidence            666655432  11    11111111111122 2267777787753       24788888776532211111111 1122


Q ss_pred             EEcCCCCEEEEecC------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCC-----CcEEEEE
Q 024868          161 DFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVY  229 (261)
Q Consensus       161 ~~s~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~-----d~~i~~~  229 (261)
                      +. .++++++.|+.      -..+.+||+.+.+-...-.......-.+++. -+++. |+    .++.     ...+.+|
T Consensus       155 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-yv----~GG~~~~~~~~~~~~y  227 (318)
T 2woz_A          155 IS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKI-VI----AGGVTEDGLSASVEAF  227 (318)
T ss_dssp             EE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE-EE----EEEEETTEEEEEEEEE
T ss_pred             EE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEE-EE----EcCcCCCCccceEEEE
Confidence            22 46777777764      2358999998776443321111111112222 24443 32    2322     2468899


Q ss_pred             ECCCCe
Q 024868          230 DISTWN  235 (261)
Q Consensus       230 d~~~~~  235 (261)
                      |+.+.+
T Consensus       228 d~~~~~  233 (318)
T 2woz_A          228 DLKTNK  233 (318)
T ss_dssp             ETTTCC
T ss_pred             ECCCCe
Confidence            987654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.89  E-value=0.11  Score=41.17  Aligned_cols=165  Identities=10%  Similarity=0.075  Sum_probs=90.4

Q ss_pred             eeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC---CCeEEEEecC---CcE
Q 024868           14 KRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFVCSTTN---GGC   87 (261)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d---g~i   87 (261)
                      .+++..-++++|=........+.+++|..+..-         .+.+.+|......+...-+   .+.+..+...   +++
T Consensus       158 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL  228 (494)
T 1bpo_A          158 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (494)
T ss_dssp             ECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC---------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred             ECCCCCeEEEEeecccCCcccceEEEeeccccc---------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence            344334444444322222344445555444332         4567788666555544321   1233344332   789


Q ss_pred             EEEEEeCCc---cc--cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           88 KLFEVYGGA---TD--INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        88 ~i~~~~~~~---~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .+.++....   ..  .+...-........+-..++..|+.-..++.-+.-|.+++||+.++..+..-.-....|..-+-
T Consensus       229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~  308 (494)
T 1bpo_A          229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP  308 (494)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecc
Confidence            999986441   10  1111111111112345567888987777888889999999999999987665545556665555


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCc
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGV  187 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~  187 (261)
                      +....-++.....|+|.--.++..+
T Consensus       309 ~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          309 HEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             ETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             cCCCCcEEEEccCceEEEEEEcccc
Confidence            5544445555566666655555443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.018  Score=44.22  Aligned_cols=195  Identities=14%  Similarity=0.099  Sum_probs=96.0

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEE--CC-CCCeEEEE-ecCCcEEEEEEe
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAV--NP-SGDDFVCS-TTNGGCKLFEVY   93 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~dg~i~i~~~~   93 (261)
                      ..++++++.+|        .++.+|..+++...      .++.. ..++....-  .+ ++..++.. ..||.|+.++..
T Consensus        10 ~~~V~v~t~dG--------~l~Ald~~tG~~~W------~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~   75 (339)
T 2be1_A           10 SDILIAADVEG--------GLHAVDRRNGHIIW------SIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH   75 (339)
T ss_dssp             EEEEEEEETTS--------CEEEEETTTTEEEE------EECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred             CCEEEEEeCCC--------eEEEEECCCCcEEE------EecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence            45788888999        88999988776522      12111 011111110  01 22333332 478888888876


Q ss_pred             CCccccceeeeeCCCCCCCCCeEE---EEE-e----eCCcEEEEeccCCeEEEEEccCceEEeeccccCC-c------ee
Q 024868           94 GGATDINLLAKKMPPLQDAGPQKC---LSF-S----VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-S------VL  158 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~---~~~-s----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~------v~  158 (261)
                      ++.......   ...+....++..   ... .    ..+..+++++.+|.+...|+.+|+.++.+..... .      ..
T Consensus        76 ~G~~~~~~~---~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~  152 (339)
T 2be1_A           76 QGLQKLPLS---IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVD  152 (339)
T ss_dssp             TEEEEEEEE---HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------
T ss_pred             CCcEEeeec---cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccc
Confidence            653321111   111111122221   000 0    1355788899999999999999999877654321 0      01


Q ss_pred             EEEEc-----CCCCEEEEecCCCcEEEEEccCCcEEEEEe-----ecCCC-ce-EEEEEecCCCcceEEEEEeeCCCcEE
Q 024868          159 DMDFS-----LDSEFLATTSTDGSARIWKTEDGVAWTFLT-----RNSDE-KI-ELCRFSKDGTKPFLFCTVQRGDKALL  226 (261)
Q Consensus       159 ~~~~s-----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~-~v-~~~~~~p~~~~~~~~~~~~~~~d~~i  226 (261)
                      +....     ..+..++.+..+..+.+.+ ++|+ +..+.     ..... ++ .....+.|+.+      +.+..||.|
T Consensus       153 ~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~------~~~~~dg~v  224 (339)
T 2be1_A          153 CSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC------IAPFRDKSL  224 (339)
T ss_dssp             ------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC------EEEETTTEE
T ss_pred             cccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE------EEECCCCEE
Confidence            11111     1234566666666666655 4443 21111     00000 00 00001234555      335678888


Q ss_pred             EEEECCCCeEEe
Q 024868          227 AVYDISTWNKIG  238 (261)
Q Consensus       227 ~~~d~~~~~~~~  238 (261)
                      ..+|..+|+.+.
T Consensus       225 ~A~d~~~G~~~W  236 (339)
T 2be1_A          225 LASDLDFRIARW  236 (339)
T ss_dssp             EEECSTTCCEEE
T ss_pred             EEEECCCCcEEE
Confidence            888888887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.72  E-value=0.13  Score=39.62  Aligned_cols=49  Identities=4%  Similarity=-0.130  Sum_probs=25.7

Q ss_pred             CeEEEEEccCceEEe--eccccCCceeEEEEcCCCCEEEEecC------CCcEEEEEc
Q 024868          134 GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTST------DGSARIWKT  183 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~iwd~  183 (261)
                      ..+.+||..+.+-..  .+......-.+++.. ++++++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            578999987765321  111111111233332 5667777664      245777887

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.50  E-value=0.46  Score=43.05  Aligned_cols=176  Identities=13%  Similarity=0.194  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEE---ECCC-CCeEEEEe----------cCCcEEEEEEeCCccccceee
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA---VNPS-GDDFVCST----------TNGGCKLFEVYGGATDINLLA  103 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~-~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~  103 (261)
                      .+..+|+.+.+.    .....+... ..+.+++   |..+ ..++++|.          ..|.|++|++...+.  +++ 
T Consensus       808 ~i~lidp~t~~~----i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL--~lv-  879 (1158)
T 3ei3_A          808 NLLIIDQHTFEV----LHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL--QTV-  879 (1158)
T ss_dssp             EEEEEETTTCCE----EEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE--EEE-
T ss_pred             EEEEEeCCCCeE----EEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE--EEE-
Confidence            355566655442    223334332 2344444   3332 46788775          248899999984321  111 


Q ss_pred             eeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEc
Q 024868          104 KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT  183 (261)
Q Consensus       104 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~  183 (261)
                         .....++++++++-- +|+ |+++ ...++++|++...+.+.........+..+.....+++++.|..-..+.++..
T Consensus       880 ---~~~~v~g~v~al~~~-~g~-Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y  953 (1158)
T 3ei3_A          880 ---AEKEVKGAVYSMVEF-NGK-LLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAY  953 (1158)
T ss_dssp             ---EEEEESSCEEEEEEE-TTE-EEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEE
T ss_pred             ---EEEEcCCcCEEEeee-CCE-EEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEE
Confidence               111225678776533 464 4444 4678999999766533311111222333333345778888887777776554


Q ss_pred             c--CCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          184 E--DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       184 ~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      +  .++....-.......++++.|-.++.      ++.+..+|.+.++....
T Consensus       954 ~~~~~~L~~~a~D~~~~~vta~~~ld~~t------~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          954 KPMEGNFEEIARDFNPNWMSAVEILDDDN------FLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ETTTTEEEEEEECCSCBCEEEEEEEETTE------EEEEETTSEEEEEEECT
T ss_pred             EcCCCeEEEEEeecccccEEEEEEEccCc------EEEEcCCCcEEEEecCC
Confidence            3  44443333333344688888877664      36678889999987653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.014  Score=44.86  Aligned_cols=112  Identities=14%  Similarity=0.158  Sum_probs=70.2

Q ss_pred             cEEEEeccCCeEEEEEccCceEEeeccccC-CceeEEEE--cC-CCCEEEEe-cCCCcEEEEEccCCcEEEEEeecC---
Q 024868          125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF--SL-DSEFLATT-STDGSARIWKTEDGVAWTFLTRNS---  196 (261)
Q Consensus       125 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~--s~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~---  196 (261)
                      ..+++++.||.|+-+|..+|+..+.+.... .++....-  .+ ++..++.. +.||.++.++..+|.....+....   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            367788899999999999999988776541 22222110  11 23334343 589999999998886554443211   


Q ss_pred             CCceEE---EEE------ecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          197 DEKIEL---CRF------SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       197 ~~~v~~---~~~------~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      ..++..   ...      +.++.      +++++.+|.+...|+++|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~------Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEK------VYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCEE------EEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCCE------EEEEecCCEEEEEECCCCcEEEEEec
Confidence            111211   000      12333      57889999999999999998876653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.23  E-value=0.035  Score=45.41  Aligned_cols=71  Identities=7%  Similarity=0.010  Sum_probs=50.3

Q ss_pred             ceeEEEEcCCCCEEEEec-CCCcEEEEEccC------CcE-------EEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868          156 SVLDMDFSLDSEFLATTS-TDGSARIWKTED------GVA-------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~------~~~-------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                      ....+..+|||++++.++ .+.++.++|++.      ++.       .....  .+......+|.++|.-     ..+--
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~a-----YTtlf  396 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNA-----YTTLF  396 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEE-----EEEET
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCce-----Eeeee
Confidence            456789999999988766 478999999873      221       22222  2334778999999942     24445


Q ss_pred             CCcEEEEEECCC
Q 024868          222 DKALLAVYDIST  233 (261)
Q Consensus       222 ~d~~i~~~d~~~  233 (261)
                      -|.+|.-|++..
T Consensus       397 idSqvvkWni~~  408 (638)
T 3sbq_A          397 IDSQVVKWNMEE  408 (638)
T ss_dssp             TTTEEEEEEHHH
T ss_pred             ecceEEEEeccH
Confidence            788999999864

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.10  E-value=0.38  Score=41.02  Aligned_cols=161  Identities=14%  Similarity=0.128  Sum_probs=84.3

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC--cEEEEEEeCCc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGA   96 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~   96 (261)
                      ..+++.||.++....-+  .++.||+.+..+...+    .++.. ..-.+.+.-.+++.++.|+.++  .+.+||..+..
T Consensus       452 ~~lyv~GG~~~~~~~~~--dv~~yd~~t~~W~~~~----~~p~~-R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~  524 (695)
T 2zwa_A          452 NQLLLIGGRKAPHQGLS--DNWIFDMKTREWSMIK----SLSHT-RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI  524 (695)
T ss_dssp             TEEEEECCBSSTTCBCC--CCEEEETTTTEEEECC----CCSBC-CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred             CEEEEEcCCCCCCCccc--cEEEEeCCCCcEEECC----CCCCC-cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence            45677777654222222  4788898887763221    11111 1122333334788888887654  68888887654


Q ss_pred             cccceeeeeCCCCC-CCCCeEEEEEeeC-CcEEEEecc--C-----CeEEEEEccCce------E--EeeccccCCceeE
Q 024868           97 TDINLLAKKMPPLQ-DAGPQKCLSFSVD-GSRFAAGGV--D-----GHLRIMHWPSLR------I--ILDEPKAHKSVLD  159 (261)
Q Consensus        97 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~-~~~l~~~~~--d-----~~i~~~d~~~~~------~--~~~~~~~~~~v~~  159 (261)
                      -  ..... ..... .......+.+..+ ++.++.|+.  +     ..+..||+.+..      -  +.........-.+
T Consensus       525 W--~~~~~-~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~  601 (695)
T 2zwa_A          525 F--KDVTP-KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ  601 (695)
T ss_dssp             E--EECCC-SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE
T ss_pred             e--EEccC-CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce
Confidence            2  11110 00011 1112233555555 677788765  2     458899988766      1  1111111111123


Q ss_pred             EEEcCCCCEEEEecC--------CCcEEEEEccCCcEE
Q 024868          160 MDFSLDSEFLATTST--------DGSARIWKTEDGVAW  189 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~--------d~~i~iwd~~~~~~~  189 (261)
                      +....++++++.|+.        ...+.+||+.+.+..
T Consensus       602 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          602 IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            333334777777774        346899999887654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.00  E-value=0.24  Score=39.92  Aligned_cols=112  Identities=13%  Similarity=0.091  Sum_probs=60.4

Q ss_pred             CCceEEEECCCCC-eEEEEecCCcEEEEEEeCCccccceeeeeCCCC-----CCCCCeEEEEEeeC----CcEEEEecc-
Q 024868           64 GDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-----QDAGPQKCLSFSVD----GSRFAAGGV-  132 (261)
Q Consensus        64 ~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~----~~~l~~~~~-  132 (261)
                      .....++|.|+|. +|+++...|.|++++.........+........     ........++|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567899999996 566667889999986433211111111000011     11356789999996    444333221 


Q ss_pred             -C----------CeEEEEEccC----------ceEEeecc--ccCCceeEEEEcCCCCEEEEecCC
Q 024868          133 -D----------GHLRIMHWPS----------LRIILDEP--KAHKSVLDMDFSLDSEFLATTSTD  175 (261)
Q Consensus       133 -d----------~~i~~~d~~~----------~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d  175 (261)
                       +          ..|.-|.+..          .+.+....  ........|.|.|||.+.++.++.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence             1          1344455432          12222222  111236789999999877776543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.98  E-value=0.45  Score=37.89  Aligned_cols=193  Identities=9%  Similarity=0.030  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC  117 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~  117 (261)
                      .+..||.+++..    ...+.+.   ..|.--.|-.+. .|+.. .+..|+-|++.+...+.+........ . ...|..
T Consensus        87 ~lQiFnle~K~k----lks~~~~---e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L-~-~~QIIn  155 (494)
T 1bpo_A           87 TLQIFNIEMKSK----MKAHTMT---DDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSL-A-GCQIIN  155 (494)
T ss_dssp             EEEEEETTTTEE----EEEEECS---SCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGG-T-TCEEEE
T ss_pred             eEEEEchHHhhh----hcceecC---CCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhc-c-cceEEE
Confidence            677777777653    2222332   456666775443 34443 35569999998766555555443222 2 367778


Q ss_pred             EEEeeCCcEEEEec-------cCCeEEEEEccCceEEeeccccCCceeEEEEcCC---CCEEEEecC---CCcEEEEEcc
Q 024868          118 LSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTST---DGSARIWKTE  184 (261)
Q Consensus       118 ~~~s~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~---d~~i~iwd~~  184 (261)
                      ...+++.++++..+       ..|.+.+|..+.+.. +.+.+|-.....+....+   .+.++.+..   .+.++|.++.
T Consensus       156 Y~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~  234 (494)
T 1bpo_A          156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG  234 (494)
T ss_dssp             EEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECS
T ss_pred             EEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence            88888999877554       246788998776544 334444333333333211   124444443   2688888885


Q ss_pred             CC---c-----EEEEEe-ec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe
Q 024868          185 DG---V-----AWTFLT-RN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA  247 (261)
Q Consensus       185 ~~---~-----~~~~~~-~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  247 (261)
                      ..   .     ....+. ..  ...-..++..++.-..+     ..-..-|.|++||++++..+..-......|
T Consensus       235 ~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi-----yviTK~G~i~lyDleTgt~i~~nrIs~~~i  303 (494)
T 1bpo_A          235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV-----FLITKYGYIHLYDLETGTCIYMNRISGETI  303 (494)
T ss_dssp             CCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE-----EEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE-----EEEecCceEEEEecccceeeeeecccCCce
Confidence            32   1     111111 11  11124467777766653     334467899999999999875444443333

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.95  E-value=0.7  Score=39.78  Aligned_cols=197  Identities=10%  Similarity=-0.005  Sum_probs=105.7

Q ss_pred             EEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEE
Q 024868           39 IFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL  118 (261)
Q Consensus        39 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  118 (261)
                      ++.||..+..+..      ........|.++.. .++ .|..++.+| +..++..+....  ........+ ....|.++
T Consensus        84 l~~yd~~~~~f~~------~~~~~~~~i~~i~~-~~g-~lWigt~~G-l~~~~~~~~~~~--~~~~~~~~l-~~~~i~~i  151 (758)
T 3ott_A           84 ILVYNYRADRYEQ------PETDFPTDVRTMAL-QGD-TLWLGALNG-LYTYQLQSRKLT--SFDTRRNGL-PNNTIYSI  151 (758)
T ss_dssp             EEEEETTTTEECC------CSCCCCSCEEEEEE-ETT-EEEEEETTE-EEEEETTTCCEE--EECHHHHCC-SCSCEEEE
T ss_pred             eEEEeCCCCEEEC------cccCCCceEEEEEe-cCC-cEEEEcCCc-ceeEeCCCCeEE--EeccCCCCc-CCCeEEEE
Confidence            6788887765421      01111234666654 355 455566664 888887654321  110000011 13467888


Q ss_pred             EEeeCCcEEEEeccCCeEEEEEccCceEEeeccc-c----CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868          119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-A----HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       119 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~----~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (261)
                      ....++++.+. +.. -+..++..+++....... .    ...|.++...+++..|..++. +.+..+|..+++......
T Consensus       152 ~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~  228 (758)
T 3ott_A          152 IRTKDNQIYVG-TYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA  228 (758)
T ss_dssp             EECTTCCEEEE-ETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE
T ss_pred             EEcCCCCEEEE-eCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC
Confidence            77777776553 344 477888766553221111 1    124788888777665555553 458889987765432211


Q ss_pred             ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee-------ccCcCeeEEEEeeCCCE
Q 024868          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------LLRKPASVLSISLDGKY  258 (261)
Q Consensus       194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-------~~~~~v~~~~~s~dg~~  258 (261)
                      .. ...|.++....+|..      ..+..+| +.++|..+++......       .....|.++....+|..
T Consensus       229 l~-~~~i~~i~~d~~g~l------WigT~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l  292 (758)
T 3ott_A          229 FH-NNSIKSLALDGNGDL------LAGTDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI  292 (758)
T ss_dssp             EE-EEEEEEEEECTTCCE------EEEETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred             CC-CCeEEEEEEcCCCCE------EEEeCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence            11 224888887777775      2233444 7888887654321111       11235777776666653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.33  E-value=0.99  Score=37.22  Aligned_cols=73  Identities=22%  Similarity=0.267  Sum_probs=52.1

Q ss_pred             CCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceE------------EeeccccCCceeEEEEcCCCCEEEEecCCCcEE
Q 024868          113 GPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI------------ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR  179 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  179 (261)
                      .....+..+|||+++++++ -+.++.++|+++...            +.......-.....+|.++|.-..+..-|.+|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            3446788999999988876 678899999874211            111122223568899999996555666899999


Q ss_pred             EEEccC
Q 024868          180 IWKTED  185 (261)
Q Consensus       180 iwd~~~  185 (261)
                      -|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.21  E-value=0.88  Score=42.00  Aligned_cols=168  Identities=10%  Similarity=0.067  Sum_probs=90.4

Q ss_pred             EEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC--CC-CCeEEEEec---CC
Q 024868           12 WIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--PS-GDDFVCSTT---NG   85 (261)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---dg   85 (261)
                      +..+++..-++++|=........+.++++..+..-.+         .+.+|......+...  +. ...+..+..   .+
T Consensus       156 Y~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ---------~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~  226 (1630)
T 1xi4_A          156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (1630)
T ss_pred             eeeCCCCCeEEEEeeccCCCcccceeeeeecccccch---------hhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence            3344444555555554444466777777777654433         466776665555442  22 223333222   26


Q ss_pred             cEEEEEEeCCccc-cceeeeeC-CCCC---CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEE
Q 024868           86 GCKLFEVYGGATD-INLLAKKM-PPLQ---DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (261)
Q Consensus        86 ~i~i~~~~~~~~~-~~~~~~~~-~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~  160 (261)
                      ++.|-++...... .....+.. ..++   ...-..++..|+.-..+...+.-|.+++||+.++..+..-.-....|...
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~  306 (1630)
T 1xi4_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  306 (1630)
T ss_pred             eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEe
Confidence            8999988654110 00000000 0111   12334567778766677777799999999999998865444334455555


Q ss_pred             EEcCCCCEEEEecCCCcEEEEEccCCcE
Q 024868          161 DFSLDSEFLATTSTDGSARIWKTEDGVA  188 (261)
Q Consensus       161 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~  188 (261)
                      +-++...-++.....|+|.--.++..+.
T Consensus       307 ~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          307 APHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             ccCCCCCceEEEcCCceEEEEEEccchh
Confidence            4444333344444666665555554443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.67  E-value=1.9  Score=39.91  Aligned_cols=163  Identities=10%  Similarity=0.034  Sum_probs=87.9

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-------cCCeE
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------VDGHL  136 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~d~~i  136 (261)
                      .+|.--.|-.+.. |+.. .+..|+-|++.+...+.+........ . ...|....-+++.++++..+       ..|.+
T Consensus       106 e~VvfWkWis~~~-l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L-~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m  181 (1630)
T 1xi4_A          106 DDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHSSL-A-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAM  181 (1630)
T ss_pred             CCceEEEecCCCe-eEEE-cCCeEEEeccCCCCccHHHHhcchhc-c-cCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence            4566667754443 4333 34569999998755544444332222 1 35677788888998877544       34788


Q ss_pred             EEEEccCceEEeeccccCCceeEEEEc--C-CCCEEEEecC---CCcEEEEEccCC---cEEE------EEeec---CCC
Q 024868          137 RIMHWPSLRIILDEPKAHKSVLDMDFS--L-DSEFLATTST---DGSARIWKTEDG---VAWT------FLTRN---SDE  198 (261)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~v~~~~~s--~-~~~~l~~~~~---d~~i~iwd~~~~---~~~~------~~~~~---~~~  198 (261)
                      .+|..+.+.. +.+.+|-.....+...  + ..+.++.+..   .+.++|-++...   .+..      .+...   .+.
T Consensus       182 QLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df  260 (1630)
T 1xi4_A          182 QLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF  260 (1630)
T ss_pred             eeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCc
Confidence            8998765443 2333333322222221  1 1223333222   367888887432   1111      11111   121


Q ss_pred             ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE
Q 024868          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (261)
Q Consensus       199 ~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  237 (261)
                       ..++..++.-..     +..-..-|.+++||+.++..+
T Consensus       261 -pv~~~vs~k~g~-----iy~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          261 -PVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             -ceEEEeccccCE-----EEEEecCceEEEEecccchhh
Confidence             334555655554     233456789999999998875

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.96  E-value=2.7  Score=36.12  Aligned_cols=175  Identities=9%  Similarity=0.034  Sum_probs=97.9

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~  143 (261)
                      ..|.++....+| .|..++.+| +..||..+.....     ...  .....|.++.. .++. |..++.+ -+..+|..+
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~-----~~~--~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~  130 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ-----PET--DFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQS  130 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC-----CSC--CCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTT
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC-----ccc--CCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCC
Confidence            468888777666 455666666 8888876643211     000  11235666654 4554 4455445 588888766


Q ss_pred             ceEEeecc----ccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC-----CCceEEEEEecCCCcceE
Q 024868          144 LRIILDEP----KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       144 ~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~~~  214 (261)
                      ++......    .....|.++...++|++.+.. . +-+..+|..+++... +....     ...|.++...+++..++ 
T Consensus       131 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lW-  206 (758)
T 3ott_A          131 RKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-Y-NGLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVW-  206 (758)
T ss_dssp             CCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-T-TEEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEE-
T ss_pred             CeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-C-CCHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEE-
Confidence            55322101    112358888888788766543 3 357788877665432 22111     12377887777766422 


Q ss_pred             EEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                          .+.. +-+..||..+++...........|.++...++|.+.
T Consensus       207 ----igt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW  246 (758)
T 3ott_A          207 ----IGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL  246 (758)
T ss_dssp             ----EEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE
T ss_pred             ----EEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE
Confidence                2222 348889987765432222223456777776666643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.46  E-value=4.4  Score=36.89  Aligned_cols=184  Identities=9%  Similarity=0.029  Sum_probs=92.6

Q ss_pred             CCCceEEEECCC------CCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccC
Q 024868           63 EGDPMTIAVNPS------GDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD  133 (261)
Q Consensus        63 ~~~v~~~~~~~~------~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d  133 (261)
                      ...|.|+++.|.      ++++++|.. |++++|+++.+.+...      ...+.......++.+..  ...+|.+|-.|
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~------~~~L~~~~~p~si~l~~~~~~~~L~igl~d  626 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH------KEMLGGEIIPRSILMTTFESSHYLLCALGD  626 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE------EEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE------EEECCCCCCCcEEEEEEeCCCcEEEEEeCC
Confidence            457999999763      368888886 9999999997543211      11121222345554443  23467888889


Q ss_pred             CeEEEEEcc--CceEEe--eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCce-EEEEEecC
Q 024868          134 GHLRIMHWP--SLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI-ELCRFSKD  208 (261)
Q Consensus       134 ~~i~~~d~~--~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~~p~  208 (261)
                      |.+.-+.+.  +++...  ...-...++.=..+...|..-+.+..+....++.-+ ++....  .-....+ ....|+..
T Consensus       627 G~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s--~l~~~~v~~~~~F~se  703 (1158)
T 3ei3_A          627 GALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS--NVNLKEVNYMCPLNSD  703 (1158)
T ss_dssp             SEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE--EBSSSCCCEEEEECCS
T ss_pred             CeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe--ccChHHhceEeccCcc
Confidence            987655543  333221  111123344444444444433333334555555433 332221  1111123 23345432


Q ss_pred             C-CcceEEEEEeeCCCcEEEEEECCCCeEEee-eeccCcCeeEEEEeeCCCEEe
Q 024868          209 G-TKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       209 ~-~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~dg~~la  260 (261)
                      . ..-    ++... ++.++|..+...+.... ....+..+..++++|+.+.++
T Consensus       704 ~~~~g----~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~  752 (1158)
T 3ei3_A          704 GYPDS----LALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFG  752 (1158)
T ss_dssp             SSTTE----EEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEE
T ss_pred             cCCCc----EEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEE
Confidence            2 110    12222 34588887754332211 123446778888888776544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.08  E-value=2.9  Score=33.71  Aligned_cols=19  Identities=26%  Similarity=0.174  Sum_probs=15.1

Q ss_pred             CeEEEEEeeCCcEEEEecc
Q 024868          114 PQKCLSFSVDGSRFAAGGV  132 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~  132 (261)
                      .-..|+|.|||.++++.+.
T Consensus       140 ~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C          140 LGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CEEEEEECTTSCEEEEECC
T ss_pred             cCCcEeECCCCcEEEEeCC
Confidence            4688999999987777654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=91.85  E-value=0.7  Score=38.45  Aligned_cols=57  Identities=16%  Similarity=0.140  Sum_probs=43.1

Q ss_pred             eeEEEEcCCCCEEEEecCC------------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868          157 VLDMDFSLDSEFLATTSTD------------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  213 (261)
                      .-.|.|+|.|++++.-..+            +.+.+.+..+++..+.+..+.+..++.++|+||++.+|
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlf  546 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEE
Confidence            4679999999977664322            24566677778887777777777899999999999854

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.95  E-value=8.3  Score=34.35  Aligned_cols=38  Identities=13%  Similarity=0.131  Sum_probs=32.9

Q ss_pred             ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (261)
                      .+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677778888899999999999999999999988764

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=89.64  E-value=2.4  Score=35.06  Aligned_cols=59  Identities=15%  Similarity=0.143  Sum_probs=41.3

Q ss_pred             ceeEEEEcCCCCEEEEecC------------CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE
Q 024868          156 SVLDMDFSLDSEFLATTST------------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  214 (261)
                      ....|.|+++|.+.+....            .+.+..++..+++....+.......++.++|+||++.+|+
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV  547 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV  547 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEE
Confidence            4568999999987773321            1256667777788766555444446899999999998543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=87.60  E-value=11  Score=31.38  Aligned_cols=59  Identities=17%  Similarity=0.062  Sum_probs=39.1

Q ss_pred             CeEEEEEeeCCcEEEEeccC------------CeEEEEEccCceEEeeccccC-CceeEEEEcCCCCEEEEe
Q 024868          114 PQKCLSFSVDGSRFAAGGVD------------GHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATT  172 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~  172 (261)
                      ..-.|+|+|+|++++.-..+            ..+.+.+..+++..+-..... .+++.++|+||++.|+..
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            45678999999976664322            235555666666543333333 479999999999877664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.38  E-value=17  Score=33.14  Aligned_cols=37  Identities=14%  Similarity=0.121  Sum_probs=31.3

Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEe
Q 024868          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  193 (261)
                      +-+++..++..++++-+.|+++|||++.+++++.+..
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            4455666788899999999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.5 bits (158), Expect = 5e-13
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
             F   E D   I   P+G+ F   + +  C+LF++      +                 
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-----YSHDNIICGIT 274

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            +SFS  G    AG  D +  +                  V  +  + D   +AT S D 
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334

Query: 177 SARIW 181
             +IW
Sbjct: 335 FLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 3/100 (3%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA 170
                + F  +G+ FA G  D   R+  +      +          +  + FS     L 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
               D +  +W          L  + +  +     + DG 
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGM 325

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 6/138 (4%)

Query: 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT 183
              F +G  D   ++                  +  + F  +    AT S D + R++  
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 184 EDGVAWTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
                    + ++    I    FSK G    L       D     V+D    ++ G    
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSG--RLLLAG---YDDFNCNVWDALKADRAGVLAG 310

Query: 243 LRKPASVLSISLDGKYLA 260
                S L ++ DG  +A
Sbjct: 311 HDNRVSCLGVTDDGMAVA 328

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 11/82 (13%), Positives = 25/82 (30%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
                + +  D     +   DG L I    +   +   P     V+   ++    ++A  
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115

Query: 173 STDGSARIWKTEDGVAWTFLTR 194
             D    I+  +       ++R
Sbjct: 116 GLDNICSIYNLKTREGNVRVSR 137

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 4e-11
 Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 9/143 (6%)

Query: 40  FSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI 99
              D    S            +      ++   P+G+       +   ++  V       
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---- 256

Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159
                K            L F+  G  F + G D  L     P    I  + K   SVL 
Sbjct: 257 ----DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLS 311

Query: 160 MDFSLDSEFLATTSTDGSARIWK 182
            D S+D +++ T S D  A +++
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 3/98 (3%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
                L +   G   A G    ++ ++H                +  + F+   ++  +T
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL-SLKFAYCGKWFVST 283

Query: 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
             D     W+T  G   +         +  C  S D  
Sbjct: 284 GKDNLLNAWRTPYGA--SIFQSKESSSVLSCDISVDDK 319

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 6/94 (6%)

Query: 103 AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI-----MHWPSLRIILDEPKAHKSV 157
           A+++  L        ++ S        GG  G +++         S    LD       +
Sbjct: 42  ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYI 100

Query: 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191
                  D   L       +  IW          
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 154 HKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKD 208
           H   V  +  S  +  + T    G  ++W        + ++     N D  I  C+   D
Sbjct: 50  HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 209 GT 210
           G 
Sbjct: 109 GC 110

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (134), Expect = 8e-10
 Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 12/135 (8%)

Query: 64  GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD 123
           G          G      + +   ++++   G     L ++             + F+ D
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265

Query: 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAH------------KSVLDMDFSLDSEFLAT 171
           G    +G +D  +++ +  +     D    +              VL +  + + E++ +
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325

Query: 172 TSTDGSARIWKTEDG 186
            S D     W  + G
Sbjct: 326 GSKDRGVLFWDKKSG 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 18/134 (13%), Positives = 41/134 (30%), Gaps = 13/134 (9%)

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK-----KMPPLQDAGPQKC 117
           +    ++     G   V  + +   KL+ +       +         ++  +        
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-------VLDMDFSLDSEFLA 170
           ++ + +     +G  D  +      S   +L   + H++               +    A
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLL-MLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 171 TTSTDGSARIWKTE 184
           T S D  ARIWK +
Sbjct: 373 TGSGDCKARIWKYK 386

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 13/70 (18%), Positives = 28/70 (40%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
              + + F   G    +   D  LR+  + + R +         V  +DF   + ++ T 
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307

Query: 173 STDGSARIWK 182
           S D + ++W+
Sbjct: 308 SVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 18/167 (10%), Positives = 46/167 (27%), Gaps = 14/167 (8%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-------- 108
             F         +  N  G      + +   +++ V        L   +           
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 109 -----LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163
                + +A   +       G    +G  D  +++    +   ++        V  + F 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
              +F+ + + D + R+W  ++      L  +    +    F K   
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-VTSLDFHKTAP 302

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 31/209 (14%), Positives = 65/209 (31%), Gaps = 33/209 (15%)

Query: 72  NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131
            P+GD  V ++ +   K++EV  G         +          + +  + DG+  A+  
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-------EWVRMVRPNQDGTLIASCS 162

Query: 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS--------------------EFLAT 171
            D  +R+    +     +  +    V  + ++ +S                     FL +
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
            S D + ++W    G+    L  + +  +    F   G   F+       D   L V+D 
Sbjct: 223 GSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGG--KFILSC---ADDKTLRVWDY 276

Query: 232 STWNKIGHKRLLRKPASVLSISLDGKYLA 260
                +          + L       Y+ 
Sbjct: 277 KNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDG 186
             H+S V  + F      + + S D + ++W  E G
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG 49

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 1e-09
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHK-SVLDMDFSLDSEFLAT 171
           P  C +++ D ++ A    +  + I      + + + E K H   V  +D++ DS  + T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 172 TSTDGSARIW 181
             TD +A +W
Sbjct: 69  CGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 65  DPMT-IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD 123
           +P++  A N           N    ++E  G         +     +  G    + ++ D
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPD 62

Query: 124 GSRFAAGGVDGHLRIMHWP 142
            +R    G D +  +    
Sbjct: 63  SNRIVTCGTDRNAYVWTLK 81

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 6e-06
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 67  MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD--------AGPQKCL 118
               +    + + CS+ +G   +        D N   +               A P   +
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257

Query: 119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA 178
            FS         G DG +   +  + + I +  K ++    +  +     L   ++D + 
Sbjct: 258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-VVKIACSDNILCLATSDDTF 316

Query: 179 RIWKTED 185
           +     D
Sbjct: 317 KTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 151 PKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK--IELCRFSK 207
            +A K  + D+        L  TS DGS  ++K +       L ++   K  +  C F  
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 208 DGTKPFLFCT 217
           +        T
Sbjct: 67  NTDLQIYVGT 76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 3/78 (3%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHW--PSLRIILDEPKAHKS-VLDMDFSLDSEFLATTS 173
            +      S       DG L +  +   +  + L +   +K  +L  +F  +++      
Sbjct: 16  DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75

Query: 174 TDGSARIWKTEDGVAWTF 191
           T     +     G     
Sbjct: 76  TVQGEILKVDLIGSPSFQ 93

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 1/114 (0%)

Query: 72  NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131
           NP G  F  +  +G   L+    G          +  +  +G    L++S DG++ A+  
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 132 VDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTE 184
            D  ++I +  +L++    P   +     +      + L + S +G       E
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 3/85 (3%)

Query: 108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDS 166
           P    G    L  +  G +         +  +   SL    +    H         S   
Sbjct: 13  PRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT-EIYTEHSHQTTVAKTSPSG 70

Query: 167 EFLATTSTDGSARIWKTEDGVAWTF 191
            + A+    G+ RIW T        
Sbjct: 71  YYCASGDVHGNVRIWDTTQTTHILK 95

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 2e-05
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTS 173
           +      ++    A G +D ++ I        I+    AHK  V ++ +   S  L ++ 
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG 276

Query: 174 TDGSARIWK 182
            D   + W 
Sbjct: 277 ADACIKRWN 285

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 4/130 (3%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
           +V     G P    + P          +             D       +P         
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
                   + +      G L      + ++     +   ++ D+  S D + +     DG
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 177 SARIWKTEDG 186
               +  E  
Sbjct: 337 KIYTFPLEKP 346

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 1e-04
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 127 FAAGGVDGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW 181
            A G +D  + +  M+ PS   I+ +     S ++    L+   + +   D + + W
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 2e-04
 Identities = 8/51 (15%), Positives = 17/51 (33%)

Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205
           K++  +  S D + L +   +G    W    G++           I   + 
Sbjct: 13  KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD 175
            LS S DG    +   +GH+      +       P  H + +  +  +   +    +  D
Sbjct: 17  ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD 76

Query: 176 GSARIWKTEDGVAWTF 191
               +     GV  + 
Sbjct: 77  HLKVVPAGGSGVDSSK 92

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 12/152 (7%)

Query: 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS 173
             +  S   DG    +G +D  +R+    +   I            M+       L + +
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN 234

Query: 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233
            D + +IW  + G     L   +  +  +     +             D   + ++D+ T
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-----SDDGTVKLWDLKT 289

Query: 234 WNKI-----GHKRLLRKPASVLSISLDGKYLA 260
              I                 +  S      A
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 321

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 14/146 (9%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 45  KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK 104
            +  V+       +   +    +T  +    +  V    +   K++++  G         
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC------L 250

Query: 105 KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----LDEPKAHKSVLD 159
           +     +           + +       DG +++    +   I     L+   +   V  
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310

Query: 160 MDFSLDSEFLATTSTDGSA----RIW 181
           +  S      A  S +G+      + 
Sbjct: 311 IRASNTKLVCAVGSRNGTEETKLLVL 336

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 7/66 (10%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD 175
            ++           G +    I +  S +++          +  ++F      +A    D
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKD 344

Query: 176 GSARIW 181
           G + + 
Sbjct: 345 GQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 4/98 (4%)

Query: 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR 194
              I  W +          H ++  +     S+ +  + ++    I+    G        
Sbjct: 262 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL 321

Query: 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232
              ++I    F        L   V++  ++ L + D S
Sbjct: 322 KDADQIWSVNFKGKT----LVAAVEKDGQSFLEILDFS 355

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (80), Expect = 0.004
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 123 DGSRFAAGGVDGHLRIMHWPSLRII--LDEPKAHKSVLDMDFSLDSE-FLATTSTDGSAR 179
           D  +FA  G D  +R+    + + +      K       +         + + S DG+  
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 180 IWK 182
            ++
Sbjct: 322 FYE 324

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.6
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.59
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.55
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.52
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.44
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.44
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.42
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.34
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.33
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.29
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.17
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.16
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.15
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.14
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.11
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.06
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.93
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.84
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.47
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.18
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.02
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.89
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.82
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.78
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.71
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.64
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.61
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.52
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.4
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.4
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.26
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.24
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.15
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	97.1
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.1
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.1
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.03
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.95
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.84
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.61
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.34
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.95
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.27
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.77
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.23
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.92
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.15
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.23
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	86.99
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.64
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	84.41
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	83.31
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	80.22

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-38  Score=249.03  Aligned_cols=231  Identities=14%  Similarity=0.197  Sum_probs=190.4

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      -.||+|++|+|+   ..++|+|+.++        .|..||..+.++    .....+++|.+.|.+++|+|++++|++++.
T Consensus         7 ~~pIt~~~~s~d---g~~la~~~~~~--------~i~iw~~~~~~~----~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~   71 (371)
T d1k8kc_           7 VEPISCHAWNKD---RTQIAICPNNH--------EVHIYEKSGNKW----VQVHELKEHNGQVTGVDWAPDSNRIVTCGT   71 (371)
T ss_dssp             SSCCCEEEECTT---SSEEEEECSSS--------EEEEEEEETTEE----EEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEECCC---CCEEEEEeCCC--------EEEEEECCCCCE----EEEEEecCCCCCEEEEEECCCCCEEEEEEC
Confidence            368999999996   56889998888        777888766543    235678899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE----EeeccccCCceeE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI----ILDEPKAHKSVLD  159 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~  159 (261)
                      |++|++||+.++....     ......+...|.+++|+|+++.|++++.|+.+++|++.....    ......+...|.+
T Consensus        72 D~~i~vWd~~~~~~~~-----~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          72 DRNAYVWTLKGRTWKP-----TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             TSCEEEEEEETTEEEE-----EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             CCeEEEEeeccccccc-----ccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccc
Confidence            9999999998765321     122234567899999999999999999999999999876442    2223345668999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEccCC------------------cEEEEEeecCCCceEEEEEecCCCcceEEEEEeeC
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTEDG------------------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~------------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~  221 (261)
                      ++|+|++++|++++.|+.+++||....                  +.+.....+.. .+.+++|+|+|++     +++++
T Consensus       147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~-----l~s~~  220 (371)
T d1k8kc_         147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSR-----VAWVS  220 (371)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSE-----EEEEE
T ss_pred             ccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeeccccc-----ccccc
Confidence            999999999999999999999998642                  23444444444 6999999999998     68888


Q ss_pred             CCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       222 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      .|+.|++||+++++.+..+..+..+|.+++|+|||++||
T Consensus       221 ~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la  259 (371)
T d1k8kc_         221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA  259 (371)
T ss_dssp             TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             cCCcceEEeeecccceeeeecccccceeeeecCCCCEEE
Confidence            999999999999999888888999999999999999886

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-36  Score=231.38  Aligned_cols=237  Identities=18%  Similarity=0.187  Sum_probs=199.9

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|+|++|+|+   ..++++|+.|+        .|..||..+...      ...+..|...|.+++|+|+++++++++
T Consensus        54 H~~~I~~l~~s~~---~~~l~sgs~Dg--------~v~iWd~~~~~~------~~~~~~~~~~v~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_          54 HLAKIYAMHWGTD---SRLLVSASQDG--------KLIIWDSYTTNK------VHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEETTT--------EEEEEETTTTEE------EEEEECSCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEEEECCC---CCEEEEEECCC--------ceeeeeccccee------EEEEecccccEEeeEeeccceeeeeec
Confidence            3688999999985   56899999999        999999888765      567888999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceee--------------------------------------eeCCCCCCCCCeEEEEEeeCC
Q 024868           83 TNGGCKLFEVYGGATDINLLA--------------------------------------KKMPPLQDAGPQKCLSFSVDG  124 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~v~~~~~s~~~  124 (261)
                      .|+.+++|+............                                      ...........+....+.+.+
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             ccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccc
Confidence            999999999765432111000                                      000111224567788888889


Q ss_pred             cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee-cCCCceEEE
Q 024868          125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELC  203 (261)
Q Consensus       125 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~  203 (261)
                      .++++++.|+.+++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||++..+....+.. .....+.++
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  276 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence            9999999999999999999999888888888999999999999999999999999999999888776643 223469999


Q ss_pred             EEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       204 ~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +|+|++++     +++++.||.|++||+.+++.+..+..|..+|.+++|+||+++||+
T Consensus       277 ~~s~~~~~-----l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         277 SFSKSGRL-----LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             EECSSSCE-----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             EECCCCCE-----EEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            99999998     688999999999999999999999999999999999999999874

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-35  Score=227.46  Aligned_cols=231  Identities=14%  Similarity=0.154  Sum_probs=187.1

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|+|++|+|+   .+++++|+.++        .|..||..+...    .....+..|...|.+++|+|++++|++++
T Consensus        57 H~~~v~~~~~sp~---g~~latg~~dg--------~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~d~~~l~~~~  121 (311)
T d1nr0a1          57 HSHQTTVAKTSPS---GYYCASGDVHG--------NVRIWDTTQTTH----ILKTTIPVFSGPVKDISWDSESKRIAAVG  121 (311)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEETTS--------EEEEEESSSTTC----CEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEEeCC---CCeEeccccCc--------eEeeeeeecccc----ccccccccccCcccccccccccccccccc
Confidence            3679999999985   67999999999        888888776542    22456788999999999999999999887


Q ss_pred             cC--CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcE-EEEeccCCeEEEEEccCceEEeeccccCCceeE
Q 024868           83 TN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (261)
Q Consensus        83 ~d--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~  159 (261)
                      .+  ..+++|+++.++...       ....|...|.+++|+|++++ |++|+.|+.|++||+++++.......|..+|.+
T Consensus       122 ~~~~~~~~v~~~~~~~~~~-------~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~  194 (311)
T d1nr0a1         122 EGRERFGHVFLFDTGTSNG-------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS  194 (311)
T ss_dssp             CCSSCSEEEEETTTCCBCB-------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred             ccccccccccccccccccc-------cccccccccccccccccceeeecccccccccccccccccccccccccccccccc
Confidence            64  569999998776421       12235678999999999885 778889999999999999988888888889999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeec------CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      +.|+|+++++++++.|+.+++||+.+++....+...      +...|.+++|+|++++     +++++.||.|++||+++
T Consensus       195 v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~-----l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-----IASASADKTIKIWNVAT  269 (311)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTT
T ss_pred             cccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCE-----EEEEeCCCeEEEEECCC
Confidence            999999999999999999999999999888776532      2346999999999998     68899999999999999


Q ss_pred             CeEEeeeeccCc-CeeEEEEeeCCCEEe
Q 024868          234 WNKIGHKRLLRK-PASVLSISLDGKYLA  260 (261)
Q Consensus       234 ~~~~~~~~~~~~-~v~~~~~s~dg~~la  260 (261)
                      ++.+..+..+.. ....+.+.+++++|+
T Consensus       270 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~  297 (311)
T d1nr0a1         270 LKVEKTIPVGTRIEDQQLGIIWTKQALV  297 (311)
T ss_dssp             TEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred             CcEEEEEECCCCccceEEEEEecCCEEE
Confidence            998877765542 223334444455554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-35  Score=227.79  Aligned_cols=228  Identities=15%  Similarity=0.178  Sum_probs=185.9

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      +.+.+++++|+   ...++.+. ++        .+..|+..+...      ...+.+|...|++++|+|+|++|++|+.|
T Consensus        18 ~~~~~~a~~~~---g~~l~~~~-~~--------~v~i~~~~~~~~------~~~~~~H~~~v~~~~~sp~g~~latg~~d   79 (311)
T d1nr0a1          18 GTAVVLGNTPA---GDKIQYCN-GT--------SVYTVPVGSLTD------TEIYTEHSHQTTVAKTSPSGYYCASGDVH   79 (311)
T ss_dssp             TCCCCCEECTT---SSEEEEEE-TT--------EEEEEETTCSSC------CEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEEcCC---CCEEEEEe-CC--------EEEEEECCCCce------eEEEcCCCCCEEEEEEeCCCCeEeccccC
Confidence            45667788775   33455543 33        577788776554      44678999999999999999999999999


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc--CCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      |+|++||+..........     ...|..+|.+++|+|++++|++++.  +..+++|++++++....+..|...|.+++|
T Consensus        80 g~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~  154 (311)
T d1nr0a1          80 GNVRIWDTTQTTHILKTT-----IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF  154 (311)
T ss_dssp             SEEEEEESSSTTCCEEEE-----EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred             ceEeeeeeeccccccccc-----cccccCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999998876422211     1235678999999999999998875  456999999998887777778889999999


Q ss_pred             cCCCCE-EEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          163 SLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       163 s~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      +|++++ |++++.|+.|++||+++++....+..|.. +|+++.|+|++++     +++++.|+.+++||+++++....+.
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~-~i~~v~~~p~~~~-----l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRYNPDGSL-----FASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSCEEEEETTTCCEEEECB
T ss_pred             cccceeeecccccccccccccccccccccccccccc-cccccccCccccc-----ccccccccccccccccccccccccc
Confidence            999885 78899999999999999999888877655 6999999999998     6888999999999999887765443


Q ss_pred             -------ccCcCeeEEEEeeCCCEEeC
Q 024868          242 -------LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       242 -------~~~~~v~~~~~s~dg~~la~  261 (261)
                             .|...|.+++|+|+|++|++
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~~~~~l~t  255 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSPDGTKIAS  255 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccCCCCCEEEE
Confidence                   35678999999999999874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-35  Score=226.71  Aligned_cols=233  Identities=14%  Similarity=0.126  Sum_probs=193.5

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ...+|+|++|+|+   ..++++|+ ++        .|..||....... .........+|.+.|.+++|+|++++|++++
T Consensus        50 H~~~V~~v~fs~~---g~~latg~-dg--------~V~iWd~~~~~~~-~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~  116 (337)
T d1gxra_          50 HGEVVCAVTISNP---TRHVYTGG-KG--------CVKVWDISHPGNK-SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CSSCCCEEEECSS---SSEEEEEC-BS--------EEEEEETTSTTCC-SCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCC---CCEEEEEE-CC--------EEEEEEccCCccc-ceeEEeeecCCCCcEEEEEEcCCCCEEEEee
Confidence            4689999999985   56888876 67        6777777654321 2334455678999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .||.|++||+........     .....+...+..++|+|++.++++++.|+.+++|++.+++.......+...+.+++|
T Consensus       117 ~dg~i~iwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~  191 (337)
T d1gxra_         117 EASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             SSSEEEEEECCCC--EEE-----EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999876543111     111234578899999999999999999999999999999888777778889999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      +++++.+++++.|+.+++||+++++.+..+.  ....|.+++|+|++++     +++++.|+.+++||+++++.. ....
T Consensus       192 s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~-----l~~~~~d~~i~i~d~~~~~~~-~~~~  263 (337)
T d1gxra_         192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-----LAVGMESSNVEVLHVNKPDKY-QLHL  263 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTSSCEE-EECC
T ss_pred             cccccccccccccccccccccccceeecccc--cccceEEEEEcccccc-----cceeccccccccccccccccc-cccc
Confidence            9999999999999999999999999887765  3346999999999998     688899999999999988876 4567


Q ss_pred             cCcCeeEEEEeeCCCEEeC
Q 024868          243 LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la~  261 (261)
                      |...|.+++|+|+|++|++
T Consensus       264 ~~~~i~~v~~s~~g~~l~s  282 (337)
T d1gxra_         264 HESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEE
T ss_pred             cccccceEEECCCCCEEEE
Confidence            8899999999999999873

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=222.67  Aligned_cols=228  Identities=13%  Similarity=0.210  Sum_probs=191.4

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..++|.+++|+|+   ..++++|+.++        .|..||......    .....+..|...+..++|+|++.++++++
T Consensus        96 h~~~I~~v~~s~d---g~~l~s~~~dg--------~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  160 (337)
T d1gxra_          96 RDNYIRSCKLLPD---GCTLIVGGEAS--------TLSIWDLAAPTP----RIKAELTSSAPACYALAISPDSKVCFSCC  160 (337)
T ss_dssp             TTSBEEEEEECTT---SSEEEEEESSS--------EEEEEECCCC------EEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEEcCC---CCEEEEeeccc--------cccccccccccc----ccccccccccccccccccccccccccccc
Confidence            3568999999985   56889999999        888888764432    23556788999999999999999999999


Q ss_pred             cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .++.+++|++.++...       .....+...+.+++|+++++.+++++.|+.+++||+++++.+.. ..+...|.+++|
T Consensus       161 ~d~~i~~~~~~~~~~~-------~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~-~~~~~~i~~l~~  232 (337)
T d1gxra_         161 SDGNIAVWDLHNQTLV-------RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGY  232 (337)
T ss_dssp             TTSCEEEEETTTTEEE-------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEE
T ss_pred             cccccccccccccccc-------ccccccccccccccccccccccccccccccccccccccceeecc-cccccceEEEEE
Confidence            9999999999877641       12233567899999999999999999999999999999887543 456778999999


Q ss_pred             cCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       163 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      +|+++++++++.|+.+++||+++++.... ..| ...|.+++|+|++++     +++++.|+.|++||+.+++.+... .
T Consensus       233 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~-~~~i~~v~~s~~g~~-----l~s~s~Dg~i~iwd~~~~~~~~~~-~  304 (337)
T d1gxra_         233 CPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLH-ESCVLSLKFAYCGKW-----FVSTGKDNLLNAWRTPYGASIFQS-K  304 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTSSCEEEE-CCC-SSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCEEEEE-E
T ss_pred             cccccccceeccccccccccccccccccc-ccc-ccccceEEECCCCCE-----EEEEeCCCeEEEEECCCCCEEEEc-c
Confidence            99999999999999999999998887543 334 446999999999998     688999999999999999988654 4


Q ss_pred             cCcCeeEEEEeeCCCEEeC
Q 024868          243 LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       243 ~~~~v~~~~~s~dg~~la~  261 (261)
                      +...|.+++|+|||++||+
T Consensus       305 ~~~~v~~~~~s~d~~~l~t  323 (337)
T d1gxra_         305 ESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             CSSCEEEEEECTTSCEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEE
Confidence            7789999999999999874

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-33  Score=215.23  Aligned_cols=228  Identities=14%  Similarity=0.132  Sum_probs=193.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .++|++++|+|+   ..++++|+.|+        .|..||..+.+.      ...+.+|...|.+++|+|++.+++++..
T Consensus        17 ~~~I~~l~~sp~---~~~l~s~s~Dg--------~i~iWd~~~~~~------~~~~~~h~~~V~~~~~~~~~~~~~~~~~   79 (317)
T d1vyhc1          17 RSPVTRVIFHPV---FSVMVSASEDA--------TIKVWDYETGDF------ERTLKGHTDSVQDISFDHSGKLLASCSA   79 (317)
T ss_dssp             SSCEEEEEECSS---SSEEEEEESSS--------CEEEEETTTCCC------CEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEEcCC---CCEEEEEeCCC--------eEEEEECCCCCE------EEEEeCCCCcEEEEeeeccccccccccc
Confidence            579999999995   56899999999        788888877665      4567899999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      ++.+..|+......       ......+...+.++.|+|+++.+++++.|+.+++||+++++....+..+...+.+++|+
T Consensus        80 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (317)
T d1vyhc1          80 DMTIKLWDFQGFEC-------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN  152 (317)
T ss_dssp             TSCCCEEETTSSCE-------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             cccccccccccccc-------ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecc
Confidence            99999999876653       12233456788999999999999999999999999999998887777778889999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcE-------------------------------------------------------
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVA-------------------------------------------------------  188 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~-------------------------------------------------------  188 (261)
                      |++++|++++.|+.|++|++.+++.                                                       
T Consensus       153 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  232 (317)
T d1vyhc1         153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW  232 (317)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred             cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEE
Confidence            9999999988888888887655433                                                       


Q ss_pred             -------EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          189 -------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       189 -------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                             +..+..|. ..|.+++|+|++++     +++++.||.|++||+++++.+..+..|...|.+++|+|++++||+
T Consensus       233 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s  306 (317)
T d1vyhc1         233 DVSTGMCLMTLVGHD-NWVRGVLFHSGGKF-----ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT  306 (317)
T ss_dssp             ETTTTEEEEEEECCS-SCEEEEEECSSSSC-----EEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             ECCCCcEEEEEeCCC-CCEEEEEECCCCCE-----EEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence                   23333333 35889999999998     688999999999999999999889999999999999999999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-32  Score=212.06  Aligned_cols=227  Identities=15%  Similarity=0.204  Sum_probs=183.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ...|++++|+|+   ..++++|+.++        .+..||......      .....+|...|.++++++++..+++++.
T Consensus       121 ~~~V~~l~~s~~---~~~l~s~~~dg--------~v~i~~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~~~~~  183 (388)
T d1erja_         121 DLYIRSVCFSPD---GKFLATGAEDR--------LIRIWDIENRKI------VMILQGHEQDIYSLDYFPSGDKLVSGSG  183 (388)
T ss_dssp             CCBEEEEEECTT---SSEEEEEETTS--------CEEEEETTTTEE------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEECCC---CCcceeccccc--------cccccccccccc------cccccccccccccccccccccccccccc
Confidence            456999999985   66899999999        788888877665      5567889999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee-CCcEEEEeccCCeEEEEEccCceEEeec-------cccCC
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE-------PKAHK  155 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------~~~~~  155 (261)
                      ++.+++||..+.....        ...+......+.+++ ++++|++++.|+.|++||..++.....+       ..|..
T Consensus       184 ~~~i~~~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~  255 (388)
T d1erja_         184 DRTVRIWDLRTGQCSL--------TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD  255 (388)
T ss_dssp             TSEEEEEETTTTEEEE--------EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred             ceeeeeeecccccccc--------ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC
Confidence            9999999998765411        122334555666665 8899999999999999999887765443       23556


Q ss_pred             ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE------------EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC
Q 024868          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA------------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (261)
Q Consensus       156 ~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d  223 (261)
                      .|.+++|+|++++|++++.|+.|++||+++++.            ......| ...|.+++|+|++++     +++++.|
T Consensus       256 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~-----l~sg~~d  329 (388)
T d1erja_         256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQNDEY-----ILSGSKD  329 (388)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGGGCE-----EEEEETT
T ss_pred             CEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccc-cceEEEEEECCCCCE-----EEEEeCC
Confidence            899999999999999999999999999986543            2233333 346999999999998     6889999


Q ss_pred             cEEEEEECCCCeEEeeeeccCcCeeEEEE------eeCCCEEeC
Q 024868          224 ALLAVYDISTWNKIGHKRLLRKPASVLSI------SLDGKYLAM  261 (261)
Q Consensus       224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~------s~dg~~la~  261 (261)
                      |.|++||+++++++..+..|...|.++++      +||+++||+
T Consensus       330 g~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s  373 (388)
T d1erja_         330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT  373 (388)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             CEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEE
Confidence            99999999999999999999999998874      678888874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-31  Score=207.51  Aligned_cols=234  Identities=14%  Similarity=0.187  Sum_probs=175.8

Q ss_pred             CCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecC------------CeEEeeecCCCCCceEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS------------PLVTYVFDESEGDPMTIA   70 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~v~~~~   70 (261)
                      ..++|+|++|+|+   ..++++|+ ++        .|..||..++.....            .........|...|.+++
T Consensus        61 H~~~V~~l~fs~d---g~~lasg~-d~--------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  128 (388)
T d1erja_          61 HTSVVCCVKFSND---GEYLATGC-NK--------TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC  128 (388)
T ss_dssp             CSSCCCEEEECTT---SSEEEEEC-BS--------CEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred             CCCcEEEEEECCC---CCEEEEEe-CC--------eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEE
Confidence            4688999999985   56888875 67        566777765543110            111223446778899999


Q ss_pred             ECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec
Q 024868           71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (261)
Q Consensus        71 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  150 (261)
                      |+|++++|++++.||.|++|+...++...       ....|...|.++.|++++..+++++.++.+++||.++.......
T Consensus       129 ~s~~~~~l~s~~~dg~v~i~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         129 FSPDGKFLATGAEDRLIRIWDIENRKIVM-------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCCcceeccccccccccccccccccc-------ccccccccccccccccccccccccccceeeeeeecccccccccc
Confidence            99999999999999999999998765421       12335678999999999999999999999999999988776554


Q ss_pred             cccCCceeEEEE-cCCCCEEEEecCCCcEEEEEccCCcEEEEEee------cCCCceEEEEEecCCCcceEEEEEeeCCC
Q 024868          151 PKAHKSVLDMDF-SLDSEFLATTSTDGSARIWKTEDGVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (261)
Q Consensus       151 ~~~~~~v~~~~~-s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~~~~~~~~~~~d  223 (261)
                      ..+ .....+.+ .+++++|++++.|+.|++||.++++....+..      .+...|.+++|+|++++     +++++.|
T Consensus       202 ~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-----l~s~~~d  275 (388)
T d1erja_         202 SIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-----VVSGSLD  275 (388)
T ss_dssp             ECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-----EEEEETT
T ss_pred             ccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE-----EEEEECC
Confidence            443 44444555 45889999999999999999999887776542      12346999999999998     6889999


Q ss_pred             cEEEEEECCCCeE------------EeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          224 ALLAVYDISTWNK------------IGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       224 ~~i~~~d~~~~~~------------~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      +.|++||+++++.            ......|...+.+++|+|+|++|++
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  325 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS  325 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEE
Confidence            9999999976543            2334456788999999999999874

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-31  Score=205.87  Aligned_cols=202  Identities=14%  Similarity=0.113  Sum_probs=161.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .++|.+++|+|+   .+++++|+.|+        .+..||..+...    .....+.+|...|.+++|+|+++.|++++.
T Consensus        51 ~~~V~~l~fsp~---~~~l~s~s~D~--------~i~vWd~~~~~~----~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~  115 (371)
T d1k8kc_          51 NGQVTGVDWAPD---SNRIVTCGTDR--------NAYVWTLKGRTW----KPTLVILRINRAARCVRWAPNEKKFAVGSG  115 (371)
T ss_dssp             SSCEEEEEEETT---TTEEEEEETTS--------CEEEEEEETTEE----EEEEECCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEECCC---CCEEEEEECCC--------eEEEEeeccccc----ccccccccccccccccccccccccceeecc
Confidence            579999999985   56899998888        677777665543    224456788999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc------------------e
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL------------------R  145 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~------------------~  145 (261)
                      |+.+++|++..........   .....+...|.+++|+|++++|++++.|+.+++|+....                  +
T Consensus       116 d~~i~i~~~~~~~~~~~~~---~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~  192 (371)
T d1k8kc_         116 SRVISICYFEQENDWWVCK---HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  192 (371)
T ss_dssp             TSSEEEEEEETTTTEEEEE---EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             cCcceeeeeeccccccccc---ccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccccccccee
Confidence            9999999998765422211   112335678999999999999999999999999997542                  2


Q ss_pred             EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (261)
Q Consensus       146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~  225 (261)
                      .......+...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.. +|.+++|+|++++     ++++ .|+.
T Consensus       193 ~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~-----la~g-~d~~  265 (371)
T d1k8kc_         193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL-PLLAVTFITESSL-----VAAG-HDCF  265 (371)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEE-----EEEE-TTSS
T ss_pred             eeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc-cceeeeecCCCCE-----EEEE-cCCc
Confidence            3334445666899999999999999999999999999999999999887655 6999999999986     4444 4665


Q ss_pred             EEEEE
Q 024868          226 LAVYD  230 (261)
Q Consensus       226 i~~~d  230 (261)
                      +++|+
T Consensus       266 ~~~~~  270 (371)
T d1k8kc_         266 PVLFT  270 (371)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            55554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.1e-31  Score=201.33  Aligned_cols=232  Identities=15%  Similarity=0.143  Sum_probs=172.0

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeee-cCCCCCceEEEECCCCCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~   82 (261)
                      ..+|+|++|+|+   ..++++|+.|+        .|..||..++..      ...+ ..|...|.+++|+|++++ ++++
T Consensus        12 ~~~V~~l~~s~d---g~~l~s~s~Dg--------~v~vWd~~~~~~------~~~~~~~h~~~v~~v~~~~~g~~-~~~~   73 (299)
T d1nr0a2          12 NKAITALSSSAD---GKTLFSADAEG--------HINSWDISTGIS------NRVFPDVHATMITGIKTTSKGDL-FTVS   73 (299)
T ss_dssp             SSCEEEEEECTT---SSEEEEEETTS--------CEEEEETTTCCE------EECSSCSCSSCEEEEEECTTSCE-EEEE
T ss_pred             CCCcEEEEECCC---CCEEEEEcCCC--------eEEEEECCCCcE------EEEEcCCCCCcEEEEEeecccee-eccc
Confidence            578999999985   56899999999        788888877653      2333 578899999999999975 4556


Q ss_pred             cCCcEEEEEEeCCccccce-e-e-------------------------------eeCCCCCCCCCeEEEEEeeCCcEEEE
Q 024868           83 TNGGCKLFEVYGGATDINL-L-A-------------------------------KKMPPLQDAGPQKCLSFSVDGSRFAA  129 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~-~-~-------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~  129 (261)
                      .|+.+++|+.......... . .                               ...........+.+++|+|+++++++
T Consensus        74 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred             ceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7899999997654320000 0 0                               00001112346788999999999999


Q ss_pred             eccCCeEEEEEccCceEEe-eccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEE---eecCCCceEEEEE
Q 024868          130 GGVDGHLRIMHWPSLRIIL-DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---TRNSDEKIELCRF  205 (261)
Q Consensus       130 ~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~  205 (261)
                      ++.|+.+++||+++++... ....|...|.+++|+|++++|++++.|+.|++||+.++......   ..| ..+|++++|
T Consensus       154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~  232 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKVACVSW  232 (299)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSCEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            9999999999998776543 34456678999999999999999999999999999887665433   333 346999999


Q ss_pred             ecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee--ecc-CcCeeEEEEeeCCCEEe
Q 024868          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RLL-RKPASVLSISLDGKYLA  260 (261)
Q Consensus       206 ~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~--~~~-~~~v~~~~~s~dg~~la  260 (261)
                      +|++++     +++++.|+.|++||+++++.....  ..+ ...+..+.| +++++|+
T Consensus       233 s~~~~~-----l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~  284 (299)
T d1nr0a2         233 SPDNVR-----LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIV  284 (299)
T ss_dssp             CTTSSE-----EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEE
T ss_pred             cccccc-----eEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEE
Confidence            999998     688999999999999876543222  222 345666655 5566665

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-31  Score=206.93  Aligned_cols=179  Identities=20%  Similarity=0.262  Sum_probs=139.9

Q ss_pred             CCeEEEEecCCcEEEEEEeCCcccc-----------ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDI-----------NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~  143 (261)
                      +.++++++.||++++|++.......           ...........+...+.+++|+|++ +|++|+.|++|++||+.+
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            3567777788888888876432211           0111112223334668899999998 889999999999999998


Q ss_pred             ceEEeec------cccCCceeEEEEcCCCCEEEEecCCCc---EEEEEccCCcEEEEEe-------------ecCCCceE
Q 024868          144 LRIILDE------PKAHKSVLDMDFSLDSEFLATTSTDGS---ARIWKTEDGVAWTFLT-------------RNSDEKIE  201 (261)
Q Consensus       144 ~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~d~~---i~iwd~~~~~~~~~~~-------------~~~~~~v~  201 (261)
                      ++.+...      ..|..+|.+++|+|||++|++++.|+.   |++||+++++++..+.             +|.. .|+
T Consensus       215 ~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~V~  293 (393)
T d1sq9a_         215 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVM  293 (393)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEE
T ss_pred             cccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC-cee
Confidence            8765433      345678999999999999999998874   9999999999888774             3444 699


Q ss_pred             EEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCee----EEEEeeCCCEEe
Q 024868          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS----VLSISLDGKYLA  260 (261)
Q Consensus       202 ~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~----~~~~s~dg~~la  260 (261)
                      +++|+|++++     +++++.|++|++||+++++++..+.+|...|.    .++|+|+|..++
T Consensus       294 ~l~fspd~~~-----l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         294 SLSFNDSGET-----LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             EEEECSSSSE-----EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             eeccCCCCCe-----eEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence            9999999998     79999999999999999999999999887765    478888887665

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-30  Score=198.56  Aligned_cols=233  Identities=15%  Similarity=0.160  Sum_probs=174.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceec--CCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      +.+|++++|+|.. +..++++|+.|+        .|..||........  .......+..|.++|.+++|++++++++++
T Consensus        63 ~~~v~~v~fsP~~-~g~~lasgs~Dg--------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          63 SSVVTTVKFSPIK-GSQYLCSGDESG--------KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             TSCEEEEEECSST-TCCEEEEEETTS--------EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCEEEEEEeeCC-CCCEEEEEeCCC--------CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            4689999999864 356899999999        77777654433211  112233466788999999999999998877


Q ss_pred             ec--CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcE-EEEeccCCeEEEEEccCceEEeeccc---cCC
Q 024868           82 TT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPK---AHK  155 (261)
Q Consensus        82 ~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~  155 (261)
                      +.  ++.+++|+.+++....       ....|...|.+++|+|++.+ +++++.|+.+++||..+.+.......   +..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  206 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGNSLG-------EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS  206 (325)
T ss_dssp             ECCSSCSEEEEETTTCCEEE-------ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC
T ss_pred             eccccceEEEEeecccccce-------eeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCC
Confidence            64  5789999988765411       12235688999999998865 67788999999999988776554433   345


Q ss_pred             ceeEEEEcCC-CCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEe---cCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          156 SVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS---KDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       156 ~v~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      .|.+++|+|+ +.++++++.|+.|++||+++++.+..+..|.. ++..+.|+   |+|++     +++++.|+.|++||+
T Consensus       207 ~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~-----l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         207 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQK-----FATVGADATIRVWDV  280 (325)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-CCCSCEEEEEESSSSE-----EEEEETTSEEEEEET
T ss_pred             ccEEeeeccccceeccccccccceeeeeecccccccccccccc-ccccceeeeeccCCCE-----EEEEeCCCeEEEEEC
Confidence            7999999996 68899999999999999999999999887654 45555555   68887     688999999999999


Q ss_pred             CCCeEEeeeeccCcC--eeE--EEEeeCCCE
Q 024868          232 STWNKIGHKRLLRKP--ASV--LSISLDGKY  258 (261)
Q Consensus       232 ~~~~~~~~~~~~~~~--v~~--~~~s~dg~~  258 (261)
                      ++++.+..+..+...  +..  +.+.+++.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (325)
T d1pgua1         281 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRI  311 (325)
T ss_dssp             TTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred             CCCCEEEEEEecCCcccCeEEEEEECCCCEE
Confidence            999988777665543  333  444444443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.5e-30  Score=196.52  Aligned_cols=239  Identities=13%  Similarity=0.095  Sum_probs=180.2

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-CCCceEEEECC--CCCeEEEE
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNP--SGDDFVCS   81 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~   81 (261)
                      +.+++++|+|+   ...++.+.++.       ..++.++......    .....+.+| ...|++++|+|  ++++|++|
T Consensus        18 ~~~t~l~~~~~---~~~la~~~~~~-------~~i~~~~~~~~~~----~~~~~~~gh~~~~v~~v~fsP~~~g~~lasg   83 (325)
T d1pgua1          18 NFTTHLSYDPT---TNAIAYPCGKS-------AFVRCLDDGDSKV----PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG   83 (325)
T ss_dssp             TCCCCCEEETT---TTEEEEEETTE-------EEEEECCSSCCSS----CSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred             CCeEEEEECCC---CCEEEEEeCCC-------EEEEEEeCCCCCc----cceEEEeCCCCCCEEEEEEeeCCCCCEEEEE
Confidence            45678899885   44566654433       1466676544332    113345666 46799999998  57899999


Q ss_pred             ecCCcEEEEEEeCCccccceeeeeC-CCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEEEccCceEEeeccccCCcee
Q 024868           82 TTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVL  158 (261)
Q Consensus        82 ~~dg~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~  158 (261)
                      +.||+|++||+.............. ....+.++|.+++|+++++++++++  .++.+.+|+..+++.+..+..|...|.
T Consensus        84 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  163 (325)
T d1pgua1          84 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN  163 (325)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred             eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccc
Confidence            9999999999987654332221111 1123567899999999999988775  467899999999988888888888999


Q ss_pred             EEEEcCCCCE-EEEecCCCcEEEEEccCCcEEEEEeec--CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          159 DMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRN--SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       159 ~~~~s~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      +++|+|++.+ +++++.|+.+++||+..++.......+  +...|.+++|+|++..+    +++++.|+.|++||+++++
T Consensus       164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~----l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF----VITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE----EEEEETTCCEEEEETTTCC
T ss_pred             cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccccee----ccccccccceeeeeecccc
Confidence            9999998875 678889999999999988876666543  23469999999985442    5888999999999999999


Q ss_pred             EEeeeeccCcCeeEEEEe---eCCCEEeC
Q 024868          236 KIGHKRLLRKPASVLSIS---LDGKYLAM  261 (261)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s---~dg~~la~  261 (261)
                      .+..+..|..++..+.|+   |||++|++
T Consensus       240 ~~~~l~~~~~~v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         240 FLKYIEDDQEPVQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             EEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred             ccccccccccccccceeeeeccCCCEEEE
Confidence            988888888877776666   78888863

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.8e-29  Score=190.80  Aligned_cols=197  Identities=13%  Similarity=0.185  Sum_probs=168.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..++.++.|.|+   ...+++++.++        .+..||..+...      ...+..|...+.+++|+|++++|++++.
T Consensus       101 ~~~~~~~~~~~~---~~~~~~~~~d~--------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (317)
T d1vyhc1         101 DHNVSSVSIMPN---GDHIVSASRDK--------TIKMWEVQTGYC------VKTFTGHREWVRMVRPNQDGTLIASCSN  163 (317)
T ss_dssp             SSCEEEEEECSS---SSEEEEEETTS--------EEEEEETTTCCE------EEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccceeeeccCC---CceEEeeccCc--------ceeEeeccccee------eeEEccCCCcceeeecccCCCEEEEEeC
Confidence            467788888885   56788888888        888899877664      5567889999999999999999999999


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC--------------------cEEEEeccCCeEEEEEccC
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--------------------SRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------~~l~~~~~d~~i~~~d~~~  143 (261)
                      |+.+++|+.........+       ..+...+.++.|+|++                    .++++++.|+.|++||+++
T Consensus       164 d~~v~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  236 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAEL-------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  236 (317)
T ss_dssp             TSCEEEEETTTCCEEEEE-------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             CCeEEEEeeccceeeEEE-------ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence            999999999877642211       1234566777776653                    4688899999999999999


Q ss_pred             ceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC
Q 024868          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (261)
Q Consensus       144 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d  223 (261)
                      ++.+..+..|...|.+++|+|++++|++++.||.|++||+++++++.++..|.. +|++++|+|++++     +++++.|
T Consensus       237 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~V~~~~~s~~~~~-----l~s~s~D  310 (317)
T d1vyhc1         237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPY-----VVTGSVD  310 (317)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSC-----EEEEETT
T ss_pred             CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCE-----EEEEeCC
Confidence            999888888888999999999999999999999999999999999999988765 6999999999998     6899999


Q ss_pred             cEEEEEE
Q 024868          224 ALLAVYD  230 (261)
Q Consensus       224 ~~i~~~d  230 (261)
                      |+|++||
T Consensus       311 g~i~iWd  317 (317)
T d1vyhc1         311 QTVKVWE  317 (317)
T ss_dssp             SEEEEEC
T ss_pred             CeEEEeC
Confidence            9999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=2.3e-29  Score=190.87  Aligned_cols=194  Identities=16%  Similarity=0.176  Sum_probs=151.6

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  135 (261)
                      ...+.+|.+.|++++|+|++++|++|+.||+|++||+.+++...      .....|...|.+++|+|+++++++ +.|+.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~------~~~~~h~~~v~~v~~~~~g~~~~~-~~d~~   77 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR------VFPDVHATMITGIKTTSKGDLFTV-SWDDH   77 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE------CSSCSCSSCEEEEEECTTSCEEEE-ETTTE
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE------EEcCCCCCcEEEEEeeccceeecc-cceee
Confidence            56799999999999999999999999999999999998876421      111235678999999999976554 57899


Q ss_pred             EEEEEccCceEE---------------ee-------------------------ccccCCceeEEEEcCCCCEEEEecCC
Q 024868          136 LRIMHWPSLRII---------------LD-------------------------EPKAHKSVLDMDFSLDSEFLATTSTD  175 (261)
Q Consensus       136 i~~~d~~~~~~~---------------~~-------------------------~~~~~~~v~~~~~s~~~~~l~~~~~d  175 (261)
                      +++|+.......               ..                         .......+.+++|+|+++++++++.|
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             EEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999986421100               00                         00112246788999999999999999


Q ss_pred             CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe---eeeccCcCeeEEEE
Q 024868          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG---HKRLLRKPASVLSI  252 (261)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~v~~~~~  252 (261)
                      +.+++||+++++........+..+|.+++|+|++++     +++++.|+.|++||+.++..+.   .+..|...|.+++|
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  232 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF-----LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW  232 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE-----EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccc
Confidence            999999999887655443334457999999999998     6888999999999998876543   34457789999999


Q ss_pred             eeCCCEEeC
Q 024868          253 SLDGKYLAM  261 (261)
Q Consensus       253 s~dg~~la~  261 (261)
                      +|+|++||+
T Consensus       233 s~~~~~l~s  241 (299)
T d1nr0a2         233 SPDNVRLAT  241 (299)
T ss_dssp             CTTSSEEEE
T ss_pred             cccccceEE
Confidence            999999874

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-29  Score=190.04  Aligned_cols=229  Identities=14%  Similarity=0.162  Sum_probs=170.5

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   84 (261)
                      .+|.+ ++.++   ++++++|+.|+        .|..||..+.++      ...+.+|.+.|.+++|+|+  +|++++.|
T Consensus        17 ~~V~s-~~~~~---g~~l~sgs~Dg--------~i~vWd~~~~~~------~~~~~~h~~~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2          17 DHVIT-CLQFC---GNRIVSGSDDN--------TLKVWSAVTGKC------LRTLVGHTGGVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             TSCEE-EEEEE---TTEEEEEETTS--------CEEEEETTTCCE------EEECCCCSSCEEEEEEETT--EEEEEETT
T ss_pred             CceEE-EEEEC---CCEEEEEeCCC--------eEEEEECCCCCE------EEEEeCCCCCEEEEEeCCC--ccccceec
Confidence            45543 24444   34899999999        888889887765      5678899999999999875  89999999


Q ss_pred             CcEEEEEEeCCccccce---------------------------------------------------------ee----
Q 024868           85 GGCKLFEVYGGATDINL---------------------------------------------------------LA----  103 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~---------------------------------------------------------~~----  103 (261)
                      +.+++|+..........                                                         ..    
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            99999997654320000                                                         00    


Q ss_pred             -----------eeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe
Q 024868          104 -----------KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT  172 (261)
Q Consensus       104 -----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  172 (261)
                                 .....+. ........+++++.++++++.||.|++||++.++.+.....|...+.+++++  +++|+++
T Consensus       157 ~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~  233 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSG  233 (342)
T ss_dssp             SCEEEEEGGGTEEEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEE
T ss_pred             CeEEEeecccceeeEEEc-CcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEE
Confidence                       0000000 1122345567788999999999999999999999888887777788887776  5699999


Q ss_pred             cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee-----ccCcCe
Q 024868          173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-----LLRKPA  247 (261)
Q Consensus       173 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~v  247 (261)
                      +.|+.|++||+...+....+..+........++.+++++     +++++.||+|++||+++++.+..+.     .+...|
T Consensus       234 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v  308 (342)
T d2ovrb2         234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-----VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV  308 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSE-----EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred             cCCCEEEEEecccccccccccccceeeeceeecccCCCe-----eEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCE
Confidence            999999999999998888876544322333344555666     6889999999999999999877654     355679


Q ss_pred             eEEEEeeCCCEEeC
Q 024868          248 SVLSISLDGKYLAM  261 (261)
Q Consensus       248 ~~~~~s~dg~~la~  261 (261)
                      .+++|+|++++||+
T Consensus       309 ~~v~~s~~~~~la~  322 (342)
T d2ovrb2         309 WRIRASNTKLVCAV  322 (342)
T ss_dssp             EEEEECSSEEEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            99999999998874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.5e-29  Score=190.67  Aligned_cols=194  Identities=14%  Similarity=0.199  Sum_probs=159.8

Q ss_pred             EEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        55 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      ....+++|.+.|++++|+|++++|++|+.||+|++||+.++.....       ...|..+|.+++|+|+++++++++.|+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~-------~~~~~~~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-------IPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-------EECSCSCEEEEEECTTSSEEEEEETTC
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEE-------EecccccEEeeEeeccceeeeeecccc
Confidence            3567999999999999999999999999999999999988764221       123567899999999999999999999


Q ss_pred             eEEEEEccCceE----E-----------------------------------------eeccccCCceeEEEEcCCCCEE
Q 024868          135 HLRIMHWPSLRI----I-----------------------------------------LDEPKAHKSVLDMDFSLDSEFL  169 (261)
Q Consensus       135 ~i~~~d~~~~~~----~-----------------------------------------~~~~~~~~~v~~~~~s~~~~~l  169 (261)
                      .+.+|+......    .                                         .........+....+.+.+.++
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence            999998643210    0                                         0011223356778888899999


Q ss_pred             EEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee--ccCcCe
Q 024868          170 ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPA  247 (261)
Q Consensus       170 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v  247 (261)
                      ++++.|+.|++||+++++++..+..|.. +|++++|+|++++     +++++.|+.|++||++..+.+....  .+...+
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~-----l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i  273 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNA-----FATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             EEeecCceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCE-----EEEEeCCCeEEEEeecccccccccccccccCce
Confidence            9999999999999999999999987765 6999999999998     6889999999999999988765543  445679


Q ss_pred             eEEEEeeCCCEEeC
Q 024868          248 SVLSISLDGKYLAM  261 (261)
Q Consensus       248 ~~~~~s~dg~~la~  261 (261)
                      .+++|+|+|++|++
T Consensus       274 ~~~~~s~~~~~l~~  287 (340)
T d1tbga_         274 TSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEEEECSSSCEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            99999999999874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.5e-28  Score=187.58  Aligned_cols=221  Identities=13%  Similarity=0.173  Sum_probs=167.9

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   85 (261)
                      .|+|++|.     .+++++|+.|+        .|..||..+.+.      ...+.+|.+.|.+++|+|+ ++|++++.|+
T Consensus        15 vitc~~~~-----~~~l~tgs~Dg--------~i~vWd~~~~~~------~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~   74 (355)
T d1nexb2          15 VITCLQFE-----DNYVITGADDK--------MIRVYDSINKKF------LLQLSGHDGGVWALKYAHG-GILVSGSTDR   74 (355)
T ss_dssp             CEEEEEEE-----TTEEEEEETTT--------EEEEEETTTTEE------EEEEECCSSCEEEEEEETT-TEEEEEETTC
T ss_pred             cEEEEEEC-----CCEEEEEeCCC--------eEEEEECCCCcE------EEEEECCCCCEEEEEEcCC-CEEEEEeccc
Confidence            35777663     34899999999        899999887765      6678899999999999986 4789999999


Q ss_pred             cEEEEEEeCCcccc--------------------------------cee-------------------------------
Q 024868           86 GCKLFEVYGGATDI--------------------------------NLL-------------------------------  102 (261)
Q Consensus        86 ~i~i~~~~~~~~~~--------------------------------~~~-------------------------------  102 (261)
                      .|++|+........                                ...                               
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            99999876543200                                000                               


Q ss_pred             ---------------------ee----------------eCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCce
Q 024868          103 ---------------------AK----------------KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (261)
Q Consensus       103 ---------------------~~----------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  145 (261)
                                           ..                ......+...+.++.|+|++.++++++.|+.|++||++++.
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence                                 00                00001123466788899999999999999999999999999


Q ss_pred             EEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcE
Q 024868          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (261)
Q Consensus       146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~  225 (261)
                      .+..+..|...|.+++|+  +++|++++.||.|++||+++++....  .|.........+++++++      ++++.|+.
T Consensus       235 ~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~------l~~g~d~~  304 (355)
T d1nexb2         235 LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNI------LVSGSENQ  304 (355)
T ss_dssp             EEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEECSSE------EEEEETTE
T ss_pred             cccccccccccccccccc--cceeeeeecccccccccccccceecc--cccCCceEEEEEcCCCCE------EEEEeCCE
Confidence            888888888899999986  57899999999999999998775443  444432333456777765      34445899


Q ss_pred             EEEEECCCCeEEe-eeeccCcCeeEEEEeeCC
Q 024868          226 LAVYDISTWNKIG-HKRLLRKPASVLSISLDG  256 (261)
Q Consensus       226 i~~~d~~~~~~~~-~~~~~~~~v~~~~~s~dg  256 (261)
                      |++||+++++.+. .+..|...|.+++|+|+.
T Consensus       305 i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~  336 (355)
T d1nexb2         305 FNIYNLRSGKLVHANILKDADQIWSVNFKGKT  336 (355)
T ss_dssp             EEEEETTTCCBCCSCTTTTCSEEEEEEEETTE
T ss_pred             EEEEECCCCCEEEEEecCCCCCEEEEEEcCCe
Confidence            9999999999874 345677899999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.7e-28  Score=181.79  Aligned_cols=227  Identities=8%  Similarity=0.060  Sum_probs=165.5

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ..+|+|++|+|       +++|+.|+        .|..||..+.           ...|...|.++++++++ .+++++.
T Consensus        13 ~~~I~~l~~s~-------l~sgs~Dg--------~v~~Wd~~~~-----------~~~h~~~V~~~~~~~~~-~~~s~s~   65 (287)
T d1pgua2          13 NKGITALTVNP-------LISGSYDG--------RIMEWSSSSM-----------HQDHSNLIVSLDNSKAQ-EYSSISW   65 (287)
T ss_dssp             SSCEEEEETTT-------TEEEETTS--------CEEETTTTEE-----------ECCCCSCEEEEECCSTT-CCEEEET
T ss_pred             CCceEEEEECc-------EEEEeCCC--------eEEEEECCCC-----------CCCCCCCEEEEEecCCC-eEEEEee
Confidence            68999999965       78999999        8888987542           35789999999998765 5788899


Q ss_pred             CCcEEEEEEeCCcccccee--------------------e------eeCCCCCCCCCeEEEEEeeCCcEEEEeccCC-eE
Q 024868           84 NGGCKLFEVYGGATDINLL--------------------A------KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-HL  136 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~--------------------~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i  136 (261)
                      |+++++|++..........                    .      .....+...  ....+++|++..+++++.++ .+
T Consensus        66 D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN--SPGSAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS--SCEEEEEECSSEEEEEETTTSCE
T ss_pred             ccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc--ceeeeeeccCcceeeecccccee
Confidence            9999999886533210000                    0      000001111  22346788888888877664 79


Q ss_pred             EEEEccCceEEeeccc-cCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEE
Q 024868          137 RIMHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (261)
Q Consensus       137 ~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  215 (261)
                      ++|++...+....... +...+.+++|+|++.+|++++.|+.|++||+.+++........+..+|.+++|+|+++.....
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             eeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccc
Confidence            9999877665554443 445899999999999999999999999999999887655433444579999999866421000


Q ss_pred             -----EEEeeCCCcEEEEEECCC-CeEEeeeeccCcCeeEEEEeeCCCEE
Q 024868          216 -----CTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       216 -----~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                           .+++++.|++|++||+++ .+.+..+..|...|.+++|+|+++++
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~  273 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV  273 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEE
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEE
Confidence                 158899999999999977 44555666889999999999998654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.1e-26  Score=176.40  Aligned_cols=238  Identities=13%  Similarity=0.111  Sum_probs=164.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCC-CCeEEEEe
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCST   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~   82 (261)
                      ...|++++|+|+   ..+|++|+.|+        .|..||......   ........+|..+|.+++|+|+ +.+|++|+
T Consensus        11 ~d~I~~l~fsp~---~~~L~s~s~Dg--------~v~iwd~~~~~~---~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~   76 (342)
T d1yfqa_          11 KDYISDIKIIPS---KSLLLITSWDG--------SLTVYKFDIQAK---NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SSCEEEEEEEGG---GTEEEEEETTS--------EEEEEEEETTTT---EEEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             CCCEEEEEEeCC---CCEEEEEECCC--------eEEEEEccCCCc---ceEEEEecCCCCCEEEEEEeCCCCCEEEEcc
Confidence            456999999996   56899999999        666666544321   0112233469999999999986 45789999


Q ss_pred             cCCcEEEEEEeCCccccceee------------------------------------------eeCCCCCCCCCeEEEEE
Q 024868           83 TNGGCKLFEVYGGATDINLLA------------------------------------------KKMPPLQDAGPQKCLSF  120 (261)
Q Consensus        83 ~dg~i~i~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~  120 (261)
                      .|+.+++|++...........                                          ..............+.+
T Consensus        77 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred             cccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence            999999999976543111000                                          00001111223345667


Q ss_pred             eeCCcEEEEeccCCeEEEEEccCceEEe---eccccCCceeEEEEc-CCCCEEEEecCCCcEEEEEccCCcE------EE
Q 024868          121 SVDGSRFAAGGVDGHLRIMHWPSLRIIL---DEPKAHKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVA------WT  190 (261)
Q Consensus       121 s~~~~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~iwd~~~~~~------~~  190 (261)
                      .+++..+++++.|+.+++||+...+...   ........+.+..+. +++..+++++.||.+.+|+......      ..
T Consensus       157 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence            8888899999999999999987654322   222233345555554 4678899999999999999864321      11


Q ss_pred             EEe--------ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          191 FLT--------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       191 ~~~--------~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+.        ..+...+++++|+|++++     +++++.||.|++||+++++.+..+..+ .....++|+|+|++||+
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-----lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~  309 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKF-----LYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCL  309 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCC-----EEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEE
T ss_pred             eeeeeeeccCCCcccccceeEEecCCccE-----EEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEE
Confidence            111        112235889999999998     799999999999999999988765533 45567889999998874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4e-26  Score=179.63  Aligned_cols=198  Identities=16%  Similarity=0.170  Sum_probs=143.7

Q ss_pred             ceeeEEEEEeeCC--cceEEEEecCCCCCCCCCceEEEEEcCCCCcee-----cCC-----eEEeeecCCCCCceEEEEC
Q 024868            5 GTVTCGSWIKRPE--NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-----TSP-----LVTYVFDESEGDPMTIAVN   72 (261)
Q Consensus         5 ~~v~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~v~~~~~~   72 (261)
                      ..+..++|.++..  ...++++++.++..      .+|.+........     ...     ........+...+.+++|+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i------~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  193 (393)
T d1sq9a_         120 HSFWALKWGASNDRLLSHRLVATDVKGTT------YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS  193 (393)
T ss_dssp             SCEEEEEEECCC----CEEEEEEETTSCE------EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred             CceEEEEEecCCCcccccEEEEEcCCCcE------EEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEEC
Confidence            4567778877542  24678888888822      4444433221110     000     1112233455678999999


Q ss_pred             CCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC---eEEEEEccCceEEee
Q 024868           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILD  149 (261)
Q Consensus        73 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~  149 (261)
                      |++ +|++|+.|++|++||+.+++.... .........|..+|.+++|+|||++|++|+.|+   .|++||+++++.+..
T Consensus       194 ~dg-~lasgs~Dg~i~iwd~~~~~~~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~  271 (393)
T d1sq9a_         194 ERG-LIATGFNNGTVQISELSTLRPLYN-FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS  271 (393)
T ss_dssp             TTS-EEEEECTTSEEEEEETTTTEEEEE-EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred             CCC-EEEEEeCCCcEEEEeecccccccc-cccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeee
Confidence            998 889999999999999988764222 222223345678999999999999999999886   499999998876554


Q ss_pred             c-------------cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceE----EEEEecCCCc
Q 024868          150 E-------------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE----LCRFSKDGTK  211 (261)
Q Consensus       150 ~-------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~----~~~~~p~~~~  211 (261)
                      +             .+|...|.+++|+|++++|++++.|++|++||+++++++.++.+|.+ .|.    .++|+|++..
T Consensus       272 l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~-~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD-DIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG-GCSSGGGCCCBCTTSCB
T ss_pred             eccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC-cccCCccEEEECCCCCE
Confidence            4             25777899999999999999999999999999999999999988765 344    5789999887

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-25  Score=168.20  Aligned_cols=222  Identities=12%  Similarity=0.196  Sum_probs=167.2

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      ...|+|++|.     .+++|+|+.|+        .|..||..+.+.      ...+.+|.+.|.+++|  ++++|++++.
T Consensus        15 ~~~V~c~~~d-----~~~l~sgs~Dg--------~i~vWd~~~~~~------~~~l~~H~~~V~~v~~--~~~~l~s~s~   73 (293)
T d1p22a2          15 SKGVYCLQYD-----DQKIVSGLRDN--------TIKIWDKNTLEC------KRILTGHTGSVLCLQY--DERVIITGSS   73 (293)
T ss_dssp             CCCEEEEECC-----SSEEEEEESSS--------CEEEEESSSCCE------EEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             CCCEEEEEEc-----CCEEEEEeCCC--------eEEEEECCCCcE------EEEEecCCCCEeeeec--ccceeecccc
Confidence            4668887763     45899999999        888888877765      6678899999999987  5789999999


Q ss_pred             CCcEEEEEEeCCccccceee------------------------------------eeCCCCCCCCCeEEEEEeeCCcEE
Q 024868           84 NGGCKLFEVYGGATDINLLA------------------------------------KKMPPLQDAGPQKCLSFSVDGSRF  127 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~v~~~~~s~~~~~l  127 (261)
                      |+.+++|++..+........                                    .......+...+..+.+  ....+
T Consensus        74 D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~  151 (293)
T d1p22a2          74 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI  151 (293)
T ss_dssp             TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEE
T ss_pred             cccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--ccccc
Confidence            99999999977643111000                                    00001122344554444  35577


Q ss_pred             EEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEec
Q 024868          128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (261)
Q Consensus       128 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p  207 (261)
                      ++++.|+.+++||+++++.+..+..+...+..+.++  +.++++++.|+.|++||+++.+.+.....+.. .+.  .+++
T Consensus       152 ~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~--~~~~  226 (293)
T d1p22a2         152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVR--CIRF  226 (293)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEE--EEEC
T ss_pred             ccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce-eee--eccc
Confidence            888899999999999998887777777778777665  67899999999999999999999888876554 354  3567


Q ss_pred             CCCcceEEEEEeeCCCcEEEEEECCC---------CeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          208 DGTKPFLFCTVQRGDKALLAVYDIST---------WNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ++.+     +++++.||.|++||+.+         ...+..+..|...|.+++|+  +++|+
T Consensus       227 ~~~~-----l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~  281 (293)
T d1p22a2         227 DNKR-----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIV  281 (293)
T ss_dssp             CSSE-----EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEE
T ss_pred             cceE-----EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEE
Confidence            7776     68899999999999753         23456677889999999884  55665

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=4e-26  Score=176.79  Aligned_cols=219  Identities=11%  Similarity=-0.011  Sum_probs=165.1

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCC-
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-   85 (261)
                      ++.-.|+|..  ..++|+++ ++        +++.||..++..      . .+ .|...|.+++|+|||++|++++.+. 
T Consensus         5 ~~~~~fSP~d--G~~~a~~~-~g--------~v~v~d~~~~~~------~-~~-~~~~~v~~~~~spDg~~l~~~~~~~g   65 (360)
T d1k32a3           5 KFAEDFSPLD--GDLIAFVS-RG--------QAFIQDVSGTYV------L-KV-PEPLRIRYVRRGGDTKVAFIHGTREG   65 (360)
T ss_dssp             GGEEEEEECG--GGCEEEEE-TT--------EEEEECTTSSBE------E-EC-SCCSCEEEEEECSSSEEEEEEEETTE
T ss_pred             hhcccccCCC--CCEEEEEE-CC--------eEEEEECCCCcE------E-Ec-cCCCCEEEEEECCCCCEEEEEEcCCC
Confidence            3456788832  45666653 46        899999987764      2 23 5889999999999999998776653 


Q ss_pred             -cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcC
Q 024868           86 -GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (261)
Q Consensus        86 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  164 (261)
                       .|++||..++..        .....+...+.+++|+||+++|++++.++.+++|++.+++.......+...+.+++|+|
T Consensus        66 ~~v~v~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  137 (360)
T d1k32a3          66 DFLGIYDYRTGKA--------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD  137 (360)
T ss_dssp             EEEEEEETTTCCE--------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             CEEEEEECCCCcE--------EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhcc
Confidence             789999988764        33345678899999999999999999999999999999888766666777899999999


Q ss_pred             CCCEEEEec----------CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          165 DSEFLATTS----------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       165 ~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      ||++|+.+.          .++.+++||+.+++...... + ...+..++|+|||++     ++.++.++.+.+||....
T Consensus       138 dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~-~~~~~~~~~spdg~~-----l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-E-NSHDYAPAFDADSKN-----LYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-S-SSBEEEEEECTTSCE-----EEEEESCCCCCEECSSSS
T ss_pred             ceeeeeeeccccccceeeccccceeeeccccCceeeecc-c-ccccccccccCCCCE-----EEEEeCCCceEccccccc
Confidence            999998643          34569999999887655443 3 335888999999998     577788899999997654


Q ss_pred             eE-------EeeeeccCcCeeEEEEeeCCCEE
Q 024868          235 NK-------IGHKRLLRKPASVLSISLDGKYL  259 (261)
Q Consensus       235 ~~-------~~~~~~~~~~v~~~~~s~dg~~l  259 (261)
                      ..       ......+...+..+.|+++++.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  242 (360)
T d1k32a3         211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS  242 (360)
T ss_dssp             CEECCSCBEEEEEESSTTCCCGGGCCCGGGSC
T ss_pred             ceeeccccceEEEecccCccccceECCCcCcc
Confidence            33       22233344444555666666543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.1e-25  Score=172.74  Aligned_cols=182  Identities=13%  Similarity=0.057  Sum_probs=146.2

Q ss_pred             eEEEECC-CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC--eEEEEEccC
Q 024868           67 MTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHWPS  143 (261)
Q Consensus        67 ~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~~~d~~~  143 (261)
                      ..-.||| ||+++++++ +|.|++||+.++..         ..+.|...|.+++|+|||++|++++.+.  .|++||.++
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~---------~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~   75 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV---------LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT   75 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBE---------EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcE---------EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC
Confidence            4567999 999999875 57899999987653         1235678899999999999998876553  799999988


Q ss_pred             ceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEE-----E
Q 024868          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT-----V  218 (261)
Q Consensus       144 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~-----~  218 (261)
                      ++. ..+..+...+.+++|+|||++|++++.++.+++|++.+++....+..+.. .+.+++|+|+|+++.....     .
T Consensus        76 ~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~la~~~~~~~~~~  153 (360)
T d1k32a3          76 GKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-MITDFTISDNSRFIAYGFPLKHGET  153 (360)
T ss_dssp             CCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-CCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             CcE-EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccc-cccchhhccceeeeeeeccccccce
Confidence            776 45677788999999999999999999999999999999998887776655 5889999999998321100     1


Q ss_pred             eeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       219 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      .+..++.+++||+.+++... ...+...+..++|+|||++|++
T Consensus       154 ~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~  195 (360)
T d1k32a3         154 DGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYY  195 (360)
T ss_dssp             CSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEE
T ss_pred             eeccccceeeeccccCceee-ecccccccccccccCCCCEEEE
Confidence            34567789999999887653 4556678889999999999873

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=2.3e-25  Score=177.05  Aligned_cols=102  Identities=16%  Similarity=0.112  Sum_probs=74.7

Q ss_pred             cCCceeEEEEcCCCCEEEE-------ecCCCcEEEEEccCCcEEEEEee--------cCCCceEEEEEecCCCcceEEEE
Q 024868          153 AHKSVLDMDFSLDSEFLAT-------TSTDGSARIWKTEDGVAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCT  217 (261)
Q Consensus       153 ~~~~v~~~~~s~~~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~v~~~~~~p~~~~~~~~~~  217 (261)
                      |...+..++|+||+++|++       ++.+++|+|||+++++...++..        .....+..++|||||+++++.+.
T Consensus       302 ~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~  381 (426)
T d1hzua2         302 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW  381 (426)
T ss_dssp             SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEEC
T ss_pred             CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEe
Confidence            3445788999999999995       44578999999999887665532        12335889999999998533222


Q ss_pred             EeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                      ...+.++.|++||.++++....+..+.      .++|+|+|-+
T Consensus       382 ~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         382 NGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV  418 (426)
T ss_dssp             CCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred             cCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence            234678999999999999887666543      3468888754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1e-23  Score=158.60  Aligned_cols=151  Identities=16%  Similarity=0.157  Sum_probs=118.5

Q ss_pred             EEEECCCCCeEEEEecCC-cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE
Q 024868           68 TIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (261)
Q Consensus        68 ~~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~  146 (261)
                      ..+++++++.+++++.++ .+++|++.......      .....+...+.+++|+|++++|++++.||.|++||+.+++.
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~  196 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF------DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV  196 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEE------ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceee------eeeeccCCceeEEEeccCccccccccccccccceeeccccc
Confidence            345667788888877764 79999986543211      12223457899999999999999999999999999998877


Q ss_pred             Eee-ccccCCceeEEEEcCC----------CCEEEEecCCCcEEEEEccC-CcEEEEEeecCCCceEEEEEecCCCcceE
Q 024868          147 ILD-EPKAHKSVLDMDFSLD----------SEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       147 ~~~-~~~~~~~v~~~~~s~~----------~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  214 (261)
                      ... ...|...|.+++|+|+          +.++++++.|+.|++||+++ ++.+..+..|.. .|++++|+|+++    
T Consensus       197 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~-~V~~v~~~~~~~----  271 (287)
T d1pgua2         197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPST----  271 (287)
T ss_dssp             EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETTE----
T ss_pred             ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC-CeEEEEECCCCE----
Confidence            554 3455678999999875          46899999999999999987 445555555555 699999999875    


Q ss_pred             EEEEeeCCCcEEEEEEC
Q 024868          215 FCTVQRGDKALLAVYDI  231 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~  231 (261)
                        +++++.|+.|++||+
T Consensus       272 --l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         272 --LVSSGADACIKRWNV  286 (287)
T ss_dssp             --EEEEETTSCEEEEEE
T ss_pred             --EEEEECCCeEEEEEE
Confidence              478889999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1e-23  Score=161.28  Aligned_cols=168  Identities=11%  Similarity=0.142  Sum_probs=121.7

Q ss_pred             EeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeC-CcEEEEeccCC
Q 024868           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDG  134 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~  134 (261)
                      ....++|.+.|++++|+|++++|++++.||+|++||+.........    .....|..+|.+++|+|+ +.+|++|+.|+
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~----~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL----LQSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE----EEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE----EEecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            4567899999999999999999999999999999999876542222    222346789999999996 56899999999


Q ss_pred             eEEEEEccCceEEeeccccCC-ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee----cC-CCceEEEEEecC
Q 024868          135 HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR----NS-DEKIELCRFSKD  208 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~-~~~v~~~~~~p~  208 (261)
                      .|++|++...........+.. ......+.+++..+++++.++.+++||++++........    +. ........+.++
T Consensus        80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             ceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            999999988776555554444 345556677888999999999999999875432222211    11 112334455666


Q ss_pred             CCcceEEEEEeeCCCcEEEEEECC
Q 024868          209 GTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                      +..     ++.++.|+.|++||++
T Consensus       160 ~~~-----~~~~~~d~~i~~~~~~  178 (342)
T d1yfqa_         160 SSR-----LIVGMNNSQVQWFRLP  178 (342)
T ss_dssp             SSE-----EEEEESTTEEEEEESS
T ss_pred             CCc-----eeeecCCCcEEEEecc
Confidence            665     4556666667777654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6.2e-23  Score=157.84  Aligned_cols=190  Identities=11%  Similarity=0.066  Sum_probs=141.8

Q ss_pred             EeeecCCCCCc-eEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCC
Q 024868           56 TYVFDESEGDP-MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (261)
Q Consensus        56 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  134 (261)
                      ...|++|.+.| +|+++  ++++|++|+.||+|++||+.+++....       ...|.++|.+++|+|+ .+|++++.|+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~-------l~~H~~~V~~l~~s~~-~~l~s~s~D~   74 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ-------LSGHDGGVWALKYAHG-GILVSGSTDR   74 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEE-------EECCSSCEEEEEEETT-TEEEEEETTC
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEE-------EECCCCCEEEEEEcCC-CEEEEEeccc
Confidence            34688998886 55555  688999999999999999988764222       1236789999999986 4789999999


Q ss_pred             eEEEEEccCceEEeeccccCC--ceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCC--------------
Q 024868          135 HLRIMHWPSLRIILDEPKAHK--SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE--------------  198 (261)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------  198 (261)
                      .|++|++...+..........  ......++++++++++++.|+.|++||+.++............              
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            999999998877655444433  3566778899999999999999999999876543322111000              


Q ss_pred             ------ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEe
Q 024868          199 ------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       199 ------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la  260 (261)
                            ......+.++++.     ++.+..|+.+++||+++++.+.....+...+.++.|+|++++++
T Consensus       155 ~~~~~~~~~v~~~~~~~~~-----~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNI-----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI  217 (355)
T ss_dssp             EEEECCSSCEEEEEEETTE-----EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             eeeeeccccccccccccce-----eeeecccceeeeeecccccceeeeeccccccccccccccceeee
Confidence                  0112345667776     67888999999999999998887788888899999999998875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-22  Score=155.42  Aligned_cols=182  Identities=16%  Similarity=0.225  Sum_probs=135.0

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccc
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI   99 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~   99 (261)
                      ..++.++.++        .+..||......      ...+.+|...+..+.+  ++.++++++.||.|++||+.......
T Consensus       148 ~~~~~~~~d~--------~i~~~d~~~~~~------~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~  211 (342)
T d2ovrb2         148 RRVVSGAYDF--------MVKVWDPETETC------LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH  211 (342)
T ss_dssp             SCEEEEETTS--------CEEEEEGGGTEE------EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ceeeeecCCC--------eEEEeeccccee------eEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeee
Confidence            3556666666        666667655443      4567777766665554  78899999999999999998776421


Q ss_pred             ceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC---CceeEEEEcCCCCEEEEecCCC
Q 024868          100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSEFLATTSTDG  176 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~d~  176 (261)
                             ....+...+.++.++  +++|++++.|+.|++||+...+....+..+.   ..+.++.+  +++++++++.||
T Consensus       212 -------~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg  280 (342)
T d2ovrb2         212 -------TLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDG  280 (342)
T ss_dssp             -------EECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTS
T ss_pred             -------EecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCC
Confidence                   122345567766554  5799999999999999998877665554433   34555555  567999999999


Q ss_pred             cEEEEEccCCcEEEEEee----cCCCceEEEEEecCCCcceEEEEEeeCCCc----EEEEEECCC
Q 024868          177 SARIWKTEDGVAWTFLTR----NSDEKIELCRFSKDGTKPFLFCTVQRGDKA----LLAVYDIST  233 (261)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~----~i~~~d~~~  233 (261)
                      .|++||+++++.++.+..    .+...|++++|+|++..     +++++.||    .|++||+..
T Consensus       281 ~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~-----la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV-----CAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE-----EEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCE-----EEEEeCCCCCeeEEEEEeCCC
Confidence            999999999999988753    22346999999999986     68888887    499999863

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=3.6e-20  Score=139.51  Aligned_cols=225  Identities=13%  Similarity=0.139  Sum_probs=166.6

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ec
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT   83 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~   83 (261)
                      ..+..++|+|+.  ..+++++..++        .|..||..+...      ...+..+. .+..++|+++++.+++. ..
T Consensus        32 ~~p~~va~spdG--~~l~v~~~~~~--------~i~v~d~~t~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   94 (301)
T d1l0qa2          32 SNPMGAVISPDG--TKVYVANAHSN--------DVSIIDTATNNV------IATVPAGS-SPQGVAVSPDGKQVYVTNMA   94 (301)
T ss_dssp             SSEEEEEECTTS--SEEEEEEGGGT--------EEEEEETTTTEE------EEEEECSS-SEEEEEECTTSSEEEEEETT
T ss_pred             CCceEEEEeCCC--CEEEEEECCCC--------EEEEEECCCCce------eeeeeccc-cccccccccccccccccccc
Confidence            345788998863  45556777778        899999988764      34455454 57899999999876654 45


Q ss_pred             CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEE-eccCCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        84 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      ++.+.+|+..++..        ...+.......++.|+|+++.++. +..++.+.+|+..+.+...... ....+..+.+
T Consensus        95 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  165 (301)
T d1l0qa2          95 SSTLSVIDTTSNTV--------AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIAV  165 (301)
T ss_dssp             TTEEEEEETTTTEE--------EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEEE
T ss_pred             cceeeeccccccee--------eeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc-cCCCceEEEe
Confidence            67899999887764        222334456788999999987754 4568889999999888765443 4456788999


Q ss_pred             cCCCCEEEEecCC-CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          163 SLDSEFLATTSTD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       163 s~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      +|+++.+++++.+ +.+.+|+....+.......+  ..+..++|+++++.+++  ......++.|++||+.+++.+..+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~v--~~~~~~~~~v~v~D~~t~~~~~~~~  241 (301)
T d1l0qa2         166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKAYV--TNVDKYFNTVSMIDTGTNKITARIP  241 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEEEE--EEECSSCCEEEEEETTTTEEEEEEE
T ss_pred             eccccceeeecccccccccccccceeeeeccccc--CCcceeecccccccccc--ccccceeeeeeeeecCCCeEEEEEc
Confidence            9999988777654 66778887777766665533  24788999999998432  3344567899999999999887665


Q ss_pred             ccCcCeeEEEEeeCCCEEe
Q 024868          242 LLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       242 ~~~~~v~~~~~s~dg~~la  260 (261)
                      . ...+..++|+|||++|.
T Consensus       242 ~-~~~~~~va~spdg~~l~  259 (301)
T d1l0qa2         242 V-GPDPAGIAVTPDGKKVY  259 (301)
T ss_dssp             C-CSSEEEEEECTTSSEEE
T ss_pred             C-CCCEEEEEEeCCCCEEE
Confidence            4 45678999999999874

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=6.5e-21  Score=145.77  Aligned_cols=217  Identities=13%  Similarity=0.094  Sum_probs=151.3

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEE-EEecCCcEEEEEEeCCccc
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATD   98 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~~   98 (261)
                      .++++++.++        +|..||..+.++    ........+...+.+++|+|||++++ +++.++.|.+||+.+++..
T Consensus         2 ~~~vt~~~d~--------~v~v~D~~s~~~----~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~   69 (337)
T d1pbyb_           2 DYILAPARPD--------KLVVIDTEKMAV----DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL   69 (337)
T ss_dssp             EEEEEEETTT--------EEEEEETTTTEE----EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             eEEEEEcCCC--------EEEEEECCCCeE----EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            4788888889        999999998775    22233344556688999999999874 5667899999999987753


Q ss_pred             cceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec------------cCCeEEEEEccCceEEeeccccCCceeEEEEcCCC
Q 024868           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS  166 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~  166 (261)
                      .......  .......+..++|+|++++++++.            .+..+.+||..+++...... ....+..++|+|||
T Consensus        70 ~~~~~~~--~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg  146 (337)
T d1pbyb_          70 GRIDLST--PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDG  146 (337)
T ss_dssp             EEEECCB--TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTS
T ss_pred             EEEecCC--CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCC
Confidence            3221110  111123456799999999988775            35678999999888765543 44568889999999


Q ss_pred             CEEEEecCCCcEEEEEccCCcEEEEEee----------------------------------------------------
Q 024868          167 EFLATTSTDGSARIWKTEDGVAWTFLTR----------------------------------------------------  194 (261)
Q Consensus       167 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------------------------------------  194 (261)
                      +++++++.  .+.+||..+++....+..                                                    
T Consensus       147 ~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (337)
T d1pbyb_         147 SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             SCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             CEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEE
Confidence            99998864  467788776655443321                                                    


Q ss_pred             -------------cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          195 -------------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       195 -------------~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                                   +....+..+.++|++.+     +..  .++.|++||+++++.+.... +...+.+++|+|||++|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v  296 (337)
T d1pbyb_         225 DLETGEMAMREVRIMDVFYFSTAVNPAKTR-----AFG--AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL  296 (337)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECTTSSE-----EEE--EESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred             EcCCCcEEEEEecCCCcceEEEEecccceE-----EEE--ccccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEE
Confidence                         01112334455555554     222  25789999999999887654 5567899999999998864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.1e-20  Score=149.85  Aligned_cols=201  Identities=10%  Similarity=-0.021  Sum_probs=148.1

Q ss_pred             eEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccc
Q 024868           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI   99 (261)
Q Consensus        20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~   99 (261)
                      .++++.+.++        ++..||..+.++      ...++.+ ..+..++|+|||+++++++.|+.+++||+.+.+...
T Consensus        33 ~~~v~~~d~g--------~v~v~D~~t~~v------~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~   97 (432)
T d1qksa2          33 LFSVTLRDAG--------QIALIDGSTYEI------KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT   97 (432)
T ss_dssp             EEEEEETTTT--------EEEEEETTTCCE------EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE
T ss_pred             EEEEEEcCCC--------EEEEEECCCCcE------EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE
Confidence            4457888888        999999998886      4556555 469999999999999999999999999998765321


Q ss_pred             ceeeeeCCCCCCCCCeEEEEEeeCCcEE-EEeccCCeEEEEEccCceEEeeccc-----------cCCceeEEEEcCCCC
Q 024868          100 NLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPK-----------AHKSVLDMDFSLDSE  167 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~  167 (261)
                      ...  ......+.+.+.+..|+|||++| +++..++.+++||..+++.+.....           .......+.++|+|.
T Consensus        98 ~~~--i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2          98 VAE--IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             EEE--EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             EEE--EecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence            110  01111223445556778899986 5677899999999998887654432           223466789999988


Q ss_pred             EE-EEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          168 FL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       168 ~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      .+ ++...++.|.+||..+++.......+.+..+..++|+|+|+++    ++++..++.+.++|..+++.+....
T Consensus       176 ~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~----~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         176 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF----ITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE----EEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEE----EEeccccceEEEeecccceEEEEec
Confidence            65 5566789999999998876655544444468999999999984    3556667799999999887765443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-20  Score=139.94  Aligned_cols=181  Identities=14%  Similarity=0.202  Sum_probs=134.0

Q ss_pred             eeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeE
Q 024868           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (261)
Q Consensus        57 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i  136 (261)
                      ....+|...|+|++|  |+++|++|+.||+|++||+.+++....       ...|...|.+++|  ++++|++++.|+.+
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~-------l~~H~~~V~~v~~--~~~~l~s~s~D~~i   77 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI-------LTGHTGSVLCLQY--DERVIITGSSDSTV   77 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE-------ECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred             eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEE-------EecCCCCEeeeec--ccceeecccccccc
Confidence            345677888998765  789999999999999999988765221       1235688988876  67899999999999


Q ss_pred             EEEEccCceEEeec-------------------------------------------cccCCceeEEEEcCCCCEEEEec
Q 024868          137 RIMHWPSLRIILDE-------------------------------------------PKAHKSVLDMDFSLDSEFLATTS  173 (261)
Q Consensus       137 ~~~d~~~~~~~~~~-------------------------------------------~~~~~~v~~~~~s~~~~~l~~~~  173 (261)
                      ++|++..+......                                           ..+...+..+.+  ....+++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s  155 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS  155 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--ccccccccc
Confidence            99998654332111                                           111223334433  345678888


Q ss_pred             CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868          174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (261)
Q Consensus       174 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  253 (261)
                      .|+.+++||+++++.+..+..+.. .+..+.++  +.+     +++++.|+.|++||+++.+.+.....+...+..  ++
T Consensus       156 ~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~  225 (293)
T d1p22a2         156 GDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRL-----VVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IR  225 (293)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTE-----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EE
T ss_pred             CCCceeeecCCCCcEEEEEccccc-ccccccCC--CCe-----EEEecCCCEEEEEecccceeeeeecccceeeee--cc
Confidence            999999999999999988887655 47666654  455     688899999999999999988777777666654  55


Q ss_pred             eCCCEEe
Q 024868          254 LDGKYLA  260 (261)
Q Consensus       254 ~dg~~la  260 (261)
                      +++.+|+
T Consensus       226 ~~~~~l~  232 (293)
T d1p22a2         226 FDNKRIV  232 (293)
T ss_dssp             CCSSEEE
T ss_pred             ccceEEE
Confidence            6666665

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.4e-21  Score=155.12  Aligned_cols=173  Identities=10%  Similarity=0.014  Sum_probs=131.7

Q ss_pred             eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE--Eeec---c
Q 024868           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDE---P  151 (261)
Q Consensus        77 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~---~  151 (261)
                      ++++.+.+|+|.+||..+++....        +.....+..++|||||+++++++.|+.+++||+.+++.  ...+   .
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~--------~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTV--------LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEE--------EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEE--------EeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence            457888899999999999886222        22334689999999999999999999999999987653  2222   2


Q ss_pred             ccCCceeEEEEcCCCCEE-EEecCCCcEEEEEccCCcEEEEEeecC----------CCceEEEEEecCCCcceEEEEEee
Q 024868          152 KAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNS----------DEKIELCRFSKDGTKPFLFCTVQR  220 (261)
Q Consensus       152 ~~~~~v~~~~~s~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~p~~~~~~~~~~~~~  220 (261)
                      .+.+.+.++.|+|||++| ++++.++.+++||..+++++..+..+.          ......+.++|+|+.+    +++.
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~----~vs~  181 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF----IVNV  181 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE----EEEE
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE----EEEE
Confidence            233356667788999986 677789999999999999988775422          2245678899999873    4667


Q ss_pred             CCCcEEEEEECCCCeEEeeee-ccCcCeeEEEEeeCCCEEeC
Q 024868          221 GDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       221 ~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~dg~~la~  261 (261)
                      ..++.|.+||..+++...... .....+..++|+|||+++++
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~v  223 (432)
T d1qksa2         182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFIT  223 (432)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred             ccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEE
Confidence            788999999998877554333 34567889999999998763

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=4.5e-20  Score=141.02  Aligned_cols=216  Identities=16%  Similarity=0.106  Sum_probs=150.1

Q ss_pred             ceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCC-----CCCceEEEECCCCCeEE
Q 024868            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-----EGDPMTIAVNPSGDDFV   79 (261)
Q Consensus         5 ~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~   79 (261)
                      ..+.+++|+|+  +..++++++.++        .|..||..+.+.      ...+..+     ...+..++|+|++++++
T Consensus        34 ~~~~~i~~spD--g~~l~v~~~~~~--------~v~v~D~~t~~~------~~~~~~~~~~~~~~~~~~v~~s~dg~~l~   97 (337)
T d1pbyb_          34 PTPMVPMVAPG--GRIAYATVNKSE--------SLVKIDLVTGET------LGRIDLSTPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TCCCCEEECTT--SSEEEEEETTTT--------EEEEEETTTCCE------EEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred             CCccEEEECCC--CCEEEEEECCCC--------eEEEEECCCCcE------EEEEecCCCcccccceeeEEEcCCCcEEE
Confidence            34678889886  345567777788        899999988765      2223222     23466899999999998


Q ss_pred             EEec------------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE
Q 024868           80 CSTT------------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII  147 (261)
Q Consensus        80 ~~~~------------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~  147 (261)
                      ++..            +..+.+||..+...        ...+.....+..++|+|||+++++++.+  +.+||..+++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~  167 (337)
T d1pbyb_          98 IYESPVRLELTHFEVQPTRVALYDAETLSR--------RKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLV  167 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEE--------EEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEE
T ss_pred             EeecCCcceeeeccccccceeeccccCCeE--------EEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEE
Confidence            7764            45677888877654        1222234567789999999999988644  567776554332


Q ss_pred             eec------------------------------------------------------------------cccCCceeEEE
Q 024868          148 LDE------------------------------------------------------------------PKAHKSVLDMD  161 (261)
Q Consensus       148 ~~~------------------------------------------------------------------~~~~~~v~~~~  161 (261)
                      ...                                                                  ..+...+..+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (337)
T d1pbyb_         168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA  247 (337)
T ss_dssp             EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred             EEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEE
Confidence            111                                                                  01112345566


Q ss_pred             EcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       162 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      ++|++.+++..  ++.+++||+.+++.+..+...  ..+.+++|+|||++     ++.++.+++|++||.++++.+..+.
T Consensus       248 ~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dG~~-----l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         248 VNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGST-----VWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             ECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCE-----EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ecccceEEEEc--cccEEEEECCCCcEEEEEcCC--CCEEEEEECCCCCE-----EEEEeCCCcEEEEECCCCcEEEEEE
Confidence            77777777665  588999999999999888643  35889999999998     5778899999999999999988776


Q ss_pred             ccCcCe----eEEEEeeC
Q 024868          242 LLRKPA----SVLSISLD  255 (261)
Q Consensus       242 ~~~~~v----~~~~~s~d  255 (261)
                      .....-    .-..|++|
T Consensus       319 ~~g~~~~~~~~~~~~~~~  336 (337)
T d1pbyb_         319 LPGNASMSLASVRLFTRD  336 (337)
T ss_dssp             CGGGCCCBTCCCEEEECC
T ss_pred             CCCCCccceeeeeEEcCC
Confidence            544332    23346655

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=1.3e-19  Score=138.96  Aligned_cols=206  Identities=12%  Similarity=0.030  Sum_probs=136.1

Q ss_pred             cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCCCceEEEECCCCCeEE-EEecCCcEEEEEEeCC
Q 024868           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGG   95 (261)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~   95 (261)
                      +..++++++.++        .|..||..+.++      ...++ .|...+.+++|+|||++++ ++..++.|++||+.++
T Consensus         7 ~~~~l~~~~~~~--------~v~v~D~~t~~~------~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~   72 (346)
T d1jmxb_           7 GHEYMIVTNYPN--------NLHVVDVASDTV------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   72 (346)
T ss_dssp             TCEEEEEEETTT--------EEEEEETTTTEE------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCcEEEEEcCCC--------EEEEEECCCCCE------EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence            367899999999        999999998875      33343 3456788999999999875 4556899999999887


Q ss_pred             ccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec------------cCCeEEEEEc----------------------
Q 024868           96 ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHW----------------------  141 (261)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------~d~~i~~~d~----------------------  141 (261)
                      +........ .........+..++|+|||+++++++            .+..+.+|+.                      
T Consensus        73 ~~~~~~~~~-~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (346)
T d1jmxb_          73 KNTFHANLS-SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR  151 (346)
T ss_dssp             EEEEEEESC-CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE
T ss_pred             eeeeeeccc-ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEE
Confidence            642221110 00001112344566777776665442            1333444433                      


Q ss_pred             -------------------cCceEEeec----------------------------------------------------
Q 024868          142 -------------------PSLRIILDE----------------------------------------------------  150 (261)
Q Consensus       142 -------------------~~~~~~~~~----------------------------------------------------  150 (261)
                                         .+++.....                                                    
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (346)
T d1jmxb_         152 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  231 (346)
T ss_dssp             ECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             ecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCce
Confidence                               221111110                                                    


Q ss_pred             ----------------cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceE
Q 024868          151 ----------------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (261)
Q Consensus       151 ----------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  214 (261)
                                      ..+...+..+.+++++.+++... ++.+.+||..+++.+..+...  ..+.+++|+|||++   
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~--~~~~~va~s~DG~~---  305 (346)
T d1jmxb_         232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDK---  305 (346)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSC---
T ss_pred             EEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCC--CCEEEEEEcCCCCE---
Confidence                            01112344566666666666554 467999999999998887643  35899999999999   


Q ss_pred             EEEEeeCCCcEEEEEECCCCeEEeeeeccCcC
Q 024868          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKP  246 (261)
Q Consensus       215 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  246 (261)
                        +++++.|+.|++||+++++.+..+....++
T Consensus       306 --l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         306 --LYLGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             --EEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             --EEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence              677888999999999999999888766544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=6.4e-19  Score=132.57  Aligned_cols=205  Identities=12%  Similarity=0.116  Sum_probs=149.7

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE-ecC
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTN   84 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d   84 (261)
                      .+..++|.++  ...+++.+..+.        .+..++..+...      ...+. +...+.++.|+|+++.++.. ..+
T Consensus        75 ~~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~  137 (301)
T d1l0qa2          75 SPQGVAVSPD--GKQVYVTNMASS--------TLSVIDTTSNTV------AGTVK-TGKSPLGLALSPDGKKLYVTNNGD  137 (301)
T ss_dssp             SEEEEEECTT--SSEEEEEETTTT--------EEEEEETTTTEE------EEEEE-CSSSEEEEEECTTSSEEEEEETTT
T ss_pred             cccccccccc--cccccccccccc--------eeeeccccccee------eeecc-ccccceEEEeecCCCeeeeeeccc
Confidence            3456677665  345566666666        788888877653      33333 44567899999999987654 457


Q ss_pred             CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC-CeEEEEEccCceEEeeccccCCceeEEEEc
Q 024868           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-GHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (261)
Q Consensus        85 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  163 (261)
                      +.+.+|+..+...        ...+.....+..+.++|+++.++++..+ +.+.+|+....+.. ........+..++|+
T Consensus       138 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  208 (301)
T d1l0qa2         138 KTVSVINTVTKAV--------INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-DTVKVEAAPSGIAVN  208 (301)
T ss_dssp             TEEEEEETTTTEE--------EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEECSSEEEEEEEC
T ss_pred             cceeeeeccccce--------eeecccCCCceEEEeeccccceeeecccccccccccccceeee-ecccccCCcceeecc
Confidence            7899999887764        2222334567889999999888777654 56777776665554 334445567889999


Q ss_pred             CCCCEEEEec---CCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          164 LDSEFLATTS---TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       164 ~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                      ++++.++.+.   .++.|++||+.+++.+..+..+.  .+++++|+|||+++    +++++.++.|++||+++++.+.++
T Consensus       209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l----~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKV----YVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccceeeeeeeeecCCCeEEEEEcCCC--CEEEEEEeCCCCEE----EEEECCCCeEEEEECCCCeEEEEE
Confidence            9999877654   34689999999999988876433  48999999999973    367788999999999999988777


Q ss_pred             ec
Q 024868          241 RL  242 (261)
Q Consensus       241 ~~  242 (261)
                      ..
T Consensus       283 ~v  284 (301)
T d1l0qa2         283 AV  284 (301)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=8.6e-18  Score=130.39  Aligned_cols=232  Identities=10%  Similarity=0.024  Sum_probs=151.3

Q ss_pred             CCceeeEEEEEeeCCcceEEEEe--cCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLG--KSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   80 (261)
                      ..+|+.+++++|+.  ..+.+..  ..+.      ...+|.+|..+.+.      ...+..+.  ...++|+|||++|++
T Consensus        19 ~~~p~~~~a~spdg--~~~~~~~~~~~~~------~~~v~v~D~~tg~~------~~~~~~~~--~~~~a~SpDG~~l~v   82 (373)
T d2madh_          19 ADGPTNDEAPGADG--RRSYINLPAHHSA------IIQQWVLDAGSGSI------LGHVNGGF--LPNPVAAHSGSEFAL   82 (373)
T ss_pred             CCCCccccccCCCC--CEEEEEcccccCC------CceEEEEECCCCCE------EEEEeCCC--CccEEEcCCCCEEEE
Confidence            35789999998874  4444432  2122      12799999888775      33444443  337999999999988


Q ss_pred             Eec----------CCcEEEEEEeCCccccceeee------------------e----------------------CCCCC
Q 024868           81 STT----------NGGCKLFEVYGGATDINLLAK------------------K----------------------MPPLQ  110 (261)
Q Consensus        81 ~~~----------dg~i~i~~~~~~~~~~~~~~~------------------~----------------------~~~~~  110 (261)
                      ++.          ++.|.+||..+++........                  .                      .....
T Consensus        83 a~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (373)
T d2madh_          83 ASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ  162 (373)
T ss_pred             EeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE
Confidence            753          577999999877642111000                  0                      00001


Q ss_pred             CCCCeEEEEEeeCCcEE-EEeccCCeEEEEEccCceEEeecc--------------------------ccC---------
Q 024868          111 DAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEP--------------------------KAH---------  154 (261)
Q Consensus       111 ~~~~v~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~--------------------------~~~---------  154 (261)
                      +.....++.++|+++.+ ++.+.|+.+.+|+...++......                          ...         
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  242 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS  242 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcC
Confidence            11234567788888654 566788999999875433221100                          000         


Q ss_pred             ------------------------CceeEEEEcCCCCEEE----------EecCCCcEEEEEccCCcEEEEEeecCCCce
Q 024868          155 ------------------------KSVLDMDFSLDSEFLA----------TTSTDGSARIWKTEDGVAWTFLTRNSDEKI  200 (261)
Q Consensus       155 ------------------------~~v~~~~~s~~~~~l~----------~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  200 (261)
                                              .....++++|++..++          ....++.+.+||..+++.+..+...  ..+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~--~~~  320 (373)
T d2madh_         243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDV  320 (373)
T ss_pred             CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC--CCe
Confidence                                    0112345556655444          3344567899999999988877633  358


Q ss_pred             EEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeC
Q 024868          201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD  255 (261)
Q Consensus       201 ~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~d  255 (261)
                      ..++|+|||+.++   +++++.|+.|++||+.+++.+..+..++.....+++.++
T Consensus       321 ~~~a~spDG~~~l---~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         321 DAISVAQDGGPDL---YALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             eEEEECCCCCEEE---EEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            9999999999632   367889999999999999999888878777888887665

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.8e-18  Score=128.40  Aligned_cols=223  Identities=12%  Similarity=0.116  Sum_probs=141.6

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCcc
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGAT   97 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~   97 (261)
                      +.++++++.++        .|..|+.+....    ........|.+.+..++|+|||++|++++ .|+.|++|++.....
T Consensus         4 ~~v~v~~~~~~--------~I~v~~~~~~~~----l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~   71 (333)
T d1ri6a_           4 QTVYIASPESQ--------QIHVWNLNHEGA----LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG   71 (333)
T ss_dssp             EEEEEEEGGGT--------EEEEEEECTTSC----EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             eEEEEECCCCC--------cEEEEEEcCCCC----eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence            34556777777        666666543221    11223345778899999999999996555 479999999987654


Q ss_pred             ccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEe--eccccCCceeEEEEcCCCCEEEEecC
Q 024868           98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTST  174 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~  174 (261)
                      .......    ......+..++|+|||++|++++ .++.+.+|+........  ....+...+.++.++|++++++.++.
T Consensus        72 ~~~~~~~----~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          72 ALTFAAE----SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             CEEEEEE----EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             cEEEeee----cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc
Confidence            3222211    12234567899999999998887 46789999877655432  22334456889999999998887664


Q ss_pred             -CCcEEEEEccCCcEEEEE-----eecCC---------------------------------------------------
Q 024868          175 -DGSARIWKTEDGVAWTFL-----TRNSD---------------------------------------------------  197 (261)
Q Consensus       175 -d~~i~iwd~~~~~~~~~~-----~~~~~---------------------------------------------------  197 (261)
                       +..+.+|+..........     .....                                                   
T Consensus       148 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  227 (333)
T d1ri6a_         148 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  227 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             ccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCC
Confidence             466888887543211100     00000                                                   


Q ss_pred             --CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEe---eeeccCcCeeEEEEeeCCCEEeC
Q 024868          198 --EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG---HKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       198 --~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                        .....++++++++++    .+....++.+.+|++.......   ........+..++|+|||++|++
T Consensus       228 ~~~~~~~~~~s~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~v  292 (333)
T d1ri6a_         228 DTRWAADIHITPDGRHL----YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA  292 (333)
T ss_dssp             SCCCEEEEEECTTSSEE----EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred             ccccceeEEEecccCce----eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEE
Confidence              113345677777753    3455667788888876543221   22233456788999999998763

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=1.2e-18  Score=137.96  Aligned_cols=178  Identities=7%  Similarity=-0.055  Sum_probs=127.4

Q ss_pred             ECCCCC--eEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEe
Q 024868           71 VNPSGD--DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (261)
Q Consensus        71 ~~~~~~--~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~  148 (261)
                      ++.|.+  ++++.+.||+|++||+.+++..        ..+.....+..++|||||+++++++.|+++++||+.+++...
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~--------~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIV--------KVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEE--------EEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEE--------EEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE
Confidence            444433  4567778999999999988752        223334568999999999999999999999999998876432


Q ss_pred             --ec---cccCCceeEEEEcCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCC----------CceEEEEEecCCCcc
Q 024868          149 --DE---PKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSD----------EKIELCRFSKDGTKP  212 (261)
Q Consensus       149 --~~---~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~----------~~v~~~~~~p~~~~~  212 (261)
                        .+   ..+...+.+++|+|||++++++ ..++.+.+||..+++++.....+..          .....+.++++++.+
T Consensus        98 ~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~  177 (426)
T d1hzua2          98 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  177 (426)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEE
Confidence              22   2333456778889999987654 4789999999999988877654321          124456677777753


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEe-eeeccCcCeeEEEEeeCCCEEe
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~s~dg~~la  260 (261)
                          ..+....+.+.+++...+..+. ....+...+..++|+|+|++++
T Consensus       178 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  222 (426)
T d1hzua2         178 ----IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFM  222 (426)
T ss_dssp             ----EEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEE
T ss_pred             ----EEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEE
Confidence                3445556777777776655332 2345667889999999999875

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=3.5e-18  Score=131.67  Aligned_cols=92  Identities=10%  Similarity=0.077  Sum_probs=65.7

Q ss_pred             EEEcCCCCEEEEecCC----------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE
Q 024868          160 MDFSLDSEFLATTSTD----------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (261)
Q Consensus       160 ~~~s~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~  229 (261)
                      ++++|++..++....+          ..|.+||..+++.+..+..+.  .+.+++|+|||+.++   +++++.|+.|++|
T Consensus       254 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~--~~~~~a~spDG~~~l---~v~~~~d~~i~v~  328 (355)
T d2bbkh_         254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLL---YALSTGDKTLYIH  328 (355)
T ss_dssp             EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEE---EEEETTTTEEEEE
T ss_pred             EEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC--CEEEEEEcCCCCeEE---EEEECCCCEEEEE
Confidence            5555555555443322          247777777777777665432  478999999998632   3677889999999


Q ss_pred             ECCCCeEEeeeeccCcCeeEEEEeeCC
Q 024868          230 DISTWNKIGHKRLLRKPASVLSISLDG  256 (261)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~dg  256 (261)
                      |+++++.+..+..++.....+.+.++|
T Consensus       329 D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         329 DAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             ETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             ECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            999999998887777666777776654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=1.8e-17  Score=126.85  Aligned_cols=99  Identities=9%  Similarity=0.051  Sum_probs=73.7

Q ss_pred             EEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEE-EeccCCeEEEEEccCceEE
Q 024868           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRII  147 (261)
Q Consensus        69 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~~~d~~~~~~~  147 (261)
                      ++|++++++|++++.+++|.+||+.+++.....      .+.+...+.+++|+|||++++ ++..++.|++||+.+++.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~------~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC------VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE------ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEE------EcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence            578999999999999999999999987642211      123345578999999999875 4557899999999998876


Q ss_pred             eeccccC------CceeEEEEcCCCCEEEEec
Q 024868          148 LDEPKAH------KSVLDMDFSLDSEFLATTS  173 (261)
Q Consensus       148 ~~~~~~~------~~v~~~~~s~~~~~l~~~~  173 (261)
                      .......      ..+..++|+|||+++++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEe
Confidence            5443222      1356788888888776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.3e-16  Score=123.77  Aligned_cols=229  Identities=8%  Similarity=-0.038  Sum_probs=141.3

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-   82 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-   82 (261)
                      .++...++..++.....+.+.....+.      .++|.+|..+.+.      ...+..+..  ..++|+|||+.|++.+ 
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~------~~~~~~d~~~~~~------~~~~~~~~~--~~~a~spDg~~i~~~~~   84 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGT------TENWVSCAGCGVT------LGHSLGAFL--SLAVAGHSGSDFALAST   84 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSS------EEEEEEETTTTEE------EEEEEECTT--CEEEECTTSSCEEEEEE
T ss_pred             CCCccccccCCCCcceeEEeeccCCCc------ceEEEEeCCCCcE------EEEEeCCCC--CcceECCCCCEEEEEcc
Confidence            345555555554422222333333332      2899999988875      333444433  3689999999988764 


Q ss_pred             ---------cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEEeeccc
Q 024868           83 ---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPK  152 (261)
Q Consensus        83 ---------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~  152 (261)
                               .++.|.+||..+.+.....................++|+|||++++++. .++.+.+||+.+++.......
T Consensus        85 ~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_          85 SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred             cCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence                     3577999999887653332211111111122334689999999998875 578999999765543211100


Q ss_pred             cC------------------------------------------------------------------------------
Q 024868          153 AH------------------------------------------------------------------------------  154 (261)
Q Consensus       153 ~~------------------------------------------------------------------------------  154 (261)
                      +.                                                                              
T Consensus       165 ~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~  244 (368)
T d1mdah_         165 ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGAT  244 (368)
T ss_dssp             SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCE
T ss_pred             cCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceE
Confidence            00                                                                              


Q ss_pred             -------------------CceeEEEEcCCCCEEEEecCC---------CcEEEEEccCCcEEEEEeecCCCceEEEEEe
Q 024868          155 -------------------KSVLDMDFSLDSEFLATTSTD---------GSARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (261)
Q Consensus       155 -------------------~~v~~~~~s~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  206 (261)
                                         .....++++|++..++....+         ..|.+||..+++.+..+...  ..+.+++|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~--~~~~~~a~s  322 (368)
T d1mdah_         245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAA  322 (368)
T ss_dssp             EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEEC
T ss_pred             EEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC--CceeEEEEC
Confidence                               001124455555544433211         24888999999888777644  248899999


Q ss_pred             cCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEE
Q 024868          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI  252 (261)
Q Consensus       207 p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  252 (261)
                      |||+.++   .+++..++.|++||..+++.+..+.... ....+++
T Consensus       323 pDG~~~l---y~s~~~~~~v~v~D~~tgk~~~~i~~g~-~P~~l~~  364 (368)
T d1mdah_         323 QDGASDN---YANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSV  364 (368)
T ss_dssp             CSSSCEE---EEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEEC
T ss_pred             CCCCEEE---EEEeCCCCeEEEEECCCCCEEEEEECCC-CCCEEEE
Confidence            9998521   3667788999999999999988776443 3455554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3.3e-15  Score=113.55  Aligned_cols=227  Identities=9%  Similarity=0.022  Sum_probs=132.1

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+.|..++|+|+.  ..+++++..++      .+.+|.++......     .......+...+..++|+|||++|++++.
T Consensus        36 ~~~v~~la~spDG--~~L~v~~~~d~------~i~~~~i~~~~~~~-----~~~~~~~~~~~p~~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          36 PGQVQPMVVSPDK--RYLYVGVRPEF------RVLAYRIAPDDGAL-----TFAAESALPGSLTHISTDHQGQFVFVGSY  102 (333)
T ss_dssp             SSCCCCEEECTTS--SEEEEEETTTT------EEEEEEECTTTCCE-----EEEEEEECSSCCSEEEECTTSSEEEEEET
T ss_pred             CCCEeEEEEeCCC--CEEEEEECCCC------eEEEEEEeCCCCcE-----EEeeecccCCCceEEEEcCCCCEEeeccc
Confidence            4678899999973  44556666666      22444444443332     11112234456788999999999988875


Q ss_pred             -CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCCeEEEEEccCceEE--------------
Q 024868           84 -NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRII--------------  147 (261)
Q Consensus        84 -dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~--------------  147 (261)
                       ++.+.+|+..........     ....+...+.++.++|++++++.++ .+..+.+|+.......              
T Consensus       103 ~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~  177 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVV-----DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA  177 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEE-----EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred             CCCceeeeccccccceecc-----cccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCC
Confidence             678999998776532211     1112234556677777777666554 3345666654321100              


Q ss_pred             ------------------------------------------eecc---ccCCceeEEEEcCCCCEEEE-ecCCCcEEEE
Q 024868          148 ------------------------------------------LDEP---KAHKSVLDMDFSLDSEFLAT-TSTDGSARIW  181 (261)
Q Consensus       148 ------------------------------------------~~~~---~~~~~v~~~~~s~~~~~l~~-~~~d~~i~iw  181 (261)
                                                                ....   ........+++++++++++. +..++.+.+|
T Consensus       178 ~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~  257 (333)
T d1ri6a_         178 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF  257 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEE
Confidence                                                      0000   01123456778888886655 4456789999


Q ss_pred             EccCCcEEEEEee--cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEE--ECCCCeE--EeeeeccCcCeeEEEEe
Q 024868          182 KTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY--DISTWNK--IGHKRLLRKPASVLSIS  253 (261)
Q Consensus       182 d~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~--d~~~~~~--~~~~~~~~~~v~~~~~s  253 (261)
                      ++...........  .....+++++|+|||+++    ++++..++.|.+|  |.++|+.  +..+..... ...+.++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l----~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~-p~~v~~~  330 (333)
T d1ri6a_         258 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL----IAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQG-PMWVVVN  330 (333)
T ss_dssp             EECTTSCCEEEEEEEECSSSCCCEEECTTSSEE----EEECTTTCEEEEEEEETTTTEEEEEEEEECSSS-CCEEEEE
T ss_pred             EEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEE----EEEECCCCeEEEEEEECCCCcEEEEEeccCCCC-CcEEEEE
Confidence            8875443322221  223347889999999983    3556677899998  5567754  333333333 3455554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=1.3e-13  Score=110.02  Aligned_cols=145  Identities=13%  Similarity=0.154  Sum_probs=100.7

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec---
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---   83 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---   83 (261)
                      -+.+.|.++   ..++...  ++        .++.||..+++... ......+..|...|.++.|||||++|+.++.   
T Consensus        19 ~~~~~W~~d---~~~~~~~--~~--------~~~~~~~~t~~~~~-~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~   84 (470)
T d2bgra1          19 LYSLRWISD---HEYLYKQ--EN--------NILVFNAEYGNSSV-FLENSTFDEFGHSINDYSISPDGQFILLEYNYVK   84 (470)
T ss_dssp             CCCCEECSS---SEEEEES--SS--------CEEEEETTTCCEEE-EECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE
T ss_pred             ccCCEeCCC---CEEEEEc--CC--------cEEEEECCCCCEEE-EEchhhhhhccCccceeEECCCCCEEEEEECCcc
Confidence            345678875   3455433  34        57888988876410 0111234455678999999999999998753   


Q ss_pred             ------CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccC---
Q 024868           84 ------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---  154 (261)
Q Consensus        84 ------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---  154 (261)
                            ++.+.+||+.++..        .....+...+..+.|||||+.||.. .++.+++|+..+++.......+.   
T Consensus        85 ~~r~s~~~~~~l~d~~~~~~--------~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~  155 (470)
T d2bgra1          85 QWRHSYTASYDIYDLNKRQL--------ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI  155 (470)
T ss_dssp             CSSSCEEEEEEEEETTTTEE--------CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred             eeeeccCceEEEEECCCCcc--------cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence                  46789999998764        3333456788999999999999997 67889999988877654332211   


Q ss_pred             ---------------CceeEEEEcCCCCEEEEecC
Q 024868          155 ---------------KSVLDMDFSLDSEFLATTST  174 (261)
Q Consensus       155 ---------------~~v~~~~~s~~~~~l~~~~~  174 (261)
                                     +....+.|||||++|+....
T Consensus       156 ~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             ccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence                           22456889999999887643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.59  E-value=1.7e-13  Score=105.87  Aligned_cols=164  Identities=10%  Similarity=-0.060  Sum_probs=118.9

Q ss_pred             ecCCCCCceEEEECCCCCeEEEEe-----cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--
Q 024868           59 FDESEGDPMTIAVNPSGDDFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--  131 (261)
Q Consensus        59 ~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--  131 (261)
                      ...+.+++..++++|||+++++..     ..+.+.+||..+++....+        .. +....++|+|||++|++++  
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~--------~~-~~~~~~a~SpDG~~l~va~~~   86 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV--------NG-GFLPNPVAAHSGSEFALASTS   86 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE--------eC-CCCccEEEcCCCCEEEEEeec
Confidence            345778899999999999987652     2356899998887652221        11 1223699999999998874  


Q ss_pred             --------cCCeEEEEEccCceEEeeccccCCc-------eeEEEEcCCCCEEEEec--CCCcEEEEEccCCcEEEEEee
Q 024868          132 --------VDGHLRIMHWPSLRIILDEPKAHKS-------VLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTR  194 (261)
Q Consensus       132 --------~d~~i~~~d~~~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~  194 (261)
                              .++.|.+||..+++.......+...       ...+.|+|+++.++...  .++.+.+|+....+...... 
T Consensus        87 ~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-  165 (373)
T d2madh_          87 FSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-  165 (373)
T ss_pred             CCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-
Confidence                    3578999999999887665544332       35688999998766543  45788999988776654433 


Q ss_pred             cCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeee
Q 024868          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (261)
Q Consensus       195 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  240 (261)
                          ...++.++|+|+..    +++.+.|+.+.+||...++.....
T Consensus       166 ----~~~~~~~s~~g~~~----~v~~~~dg~~~~~~~~~~~~~~~~  203 (373)
T d2madh_         166 ----SPTCYHIHPGAPST----FYLLCAQGGLAKTDHAGGAAGAGL  203 (373)
T ss_pred             ----cceeEEEecCCCcE----EEEEcCCCeEEEEEcCCceeeEEE
Confidence                25678899999974    367788999999999887765433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.3e-12  Score=96.23  Aligned_cols=203  Identities=20%  Similarity=0.168  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-C--cEEEEEEeCCccccceeeeeCCCCCCCC
Q 024868           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-G--GCKLFEVYGGATDINLLAKKMPPLQDAG  113 (261)
Q Consensus        37 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~  113 (261)
                      .+||..|.++...       ..+..+...+...+|||||+.||..... +  .+.+.+......        ........
T Consensus        19 ~~l~i~d~dG~~~-------~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~   83 (269)
T d2hqsa1          19 YELRVSDYDGYNQ-------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPR   83 (269)
T ss_dssp             EEEEEEETTSCSC-------EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------EEEECCSS
T ss_pred             EEEEEEcCCCCCc-------EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce--------eEEeeeec
Confidence            3788888877653       2333456778899999999999876543 3  344445444432        11223356


Q ss_pred             CeEEEEEeeCCcEEEEecc-CCe--EEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe-cCCC--cEEEEEccCCc
Q 024868          114 PQKCLSFSVDGSRFAAGGV-DGH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDG--SARIWKTEDGV  187 (261)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~--~i~iwd~~~~~  187 (261)
                      ......|+|+|+.++.... ++.  +..+....... ..............+++++..++.. ..++  .+.+.++..+.
T Consensus        84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~  162 (269)
T d2hqsa1          84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  162 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             ccccceecCCCCeeeEeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeeccccc
Confidence            7788999999998887653 333  33333333332 2333344445566778877755544 4455  45555665554


Q ss_pred             EEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCCEEeC
Q 024868          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~  261 (261)
                      ... +... ........|+|+++.++.  .........+.++|...+...  ..........+.|||||++||+
T Consensus       163 ~~~-~~~~-~~~~~~~~~spdg~~~~~--~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f  230 (269)
T d2hqsa1         163 PQR-ITWE-GSQNQDADVSSDGKFMVM--VSSNGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIY  230 (269)
T ss_dssp             CEE-CCCS-SSEEEEEEECTTSSEEEE--EEECSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEE
T ss_pred             cee-eecc-cccccccccccccceeEE--EeecCCceeeeEeecccccce--EeecCccccceEECCCCCEEEE
Confidence            332 2222 334777899999998321  122233345666676665532  3344566778999999999873

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=3.2e-11  Score=88.66  Aligned_cols=223  Identities=12%  Similarity=0.061  Sum_probs=136.8

Q ss_pred             CCceeeEEEEEeeCCcceEEEEe-cCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEE
Q 024868            3 GGGTVTCGSWIKRPENVNLVVLG-KSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (261)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   81 (261)
                      +..++...+|+|+.   ..||.. ...+..      .++..+..+..       ...+..+.+......|+|+|+.++..
T Consensus        37 ~~~~~~sP~wSPDG---k~IAf~~~~~~~~------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~i~~~  100 (269)
T d2hqsa1          37 SPQPLMSPAWSPDG---SKLAYVTFESGRS------ALVIQTLANGA-------VRQVASFPRHNGAPAFSPDGSKLAFA  100 (269)
T ss_dssp             ESSCEEEEEECTTS---SEEEEEECTTSSC------EEEEEETTTCC-------EEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCceeeeEECCCC---CEEEEEEeeccCc------ceeeeecccCc-------eeEEeeeecccccceecCCCCeeeEe
Confidence            34567788999974   345433 222222      67777776655       33455677788899999999998866


Q ss_pred             ec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec-cCC--eEEEEEccCceEEeeccccCCce
Q 024868           82 TT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDG--HLRIMHWPSLRIILDEPKAHKSV  157 (261)
Q Consensus        82 ~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~--~i~~~d~~~~~~~~~~~~~~~~v  157 (261)
                      .. ++...++.........      ..............+++++..++... .++  .+.+.++..+... .........
T Consensus       101 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~  173 (269)
T d2hqsa1         101 LSKTGSLNLYVMDLASGQI------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQN  173 (269)
T ss_dssp             ECTTSSCEEEEEETTTCCE------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEE
T ss_pred             eecCCccceeecccccccc------eeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccc
Confidence            54 3444444444333211      11112233445567777776555443 444  4666666655443 333444567


Q ss_pred             eEEEEcCCCCEEEEecCC-Cc--EEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC
Q 024868          158 LDMDFSLDSEFLATTSTD-GS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (261)
Q Consensus       158 ~~~~~s~~~~~l~~~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~  234 (261)
                      ....|+|+++.++..+.+ +.  +.+.+...+..  ....... ......|+|||++++.  ...-+....|+++++..+
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~-~~~~p~~SPDG~~i~f--~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTMVIY--SSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSEEEE--EEEETTEEEEEEEETTSC
T ss_pred             cccccccccceeEEEeecCCceeeeEeecccccc--eEeecCc-cccceEECCCCCEEEE--EEcCCCCcEEEEEECCCC
Confidence            888999999988876554 44  44445444443  2322222 4678899999998422  334455678999999876


Q ss_pred             eEEeeeeccCcCeeEEEEee
Q 024868          235 NKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~  254 (261)
                      ... .+....+.+..++|||
T Consensus       249 ~~~-~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         249 FKA-RLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CEE-ECCCSSSEEEEEEECC
T ss_pred             CEE-EEeCCCCcEEeEEeCC
Confidence            654 4555667788999998

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.52  E-value=1.6e-13  Score=109.52  Aligned_cols=140  Identities=11%  Similarity=0.021  Sum_probs=103.1

Q ss_pred             eEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---------CCeEE
Q 024868           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLR  137 (261)
Q Consensus        67 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------d~~i~  137 (261)
                      ..+.|.++++++..  .++.+.+||..+++.... +. ......+...+.++.|||||++|++++.         ++.+.
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~-~~-~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVF-LE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEE-EC-TTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEE-Ec-hhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            45789999986653  578899999998875322 11 1122233467899999999999998753         46789


Q ss_pred             EEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCC-----------------Cce
Q 024868          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----------------EKI  200 (261)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------~~v  200 (261)
                      +||+.+++. ..+..+...+..+.|||||+.+|... ++.+++|+..+++..+.......                 ...
T Consensus        96 l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          96 IYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            999998875 45666777899999999999999964 67899999998876654332211                 124


Q ss_pred             EEEEEecCCCcc
Q 024868          201 ELCRFSKDGTKP  212 (261)
Q Consensus       201 ~~~~~~p~~~~~  212 (261)
                      ..+.|||||+++
T Consensus       174 ~~~~wSPDGk~i  185 (470)
T d2bgra1         174 SALWWSPNGTFL  185 (470)
T ss_dssp             BCEEECTTSSEE
T ss_pred             cccEECCCCCcc
Confidence            567899999983

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=1.4e-11  Score=90.33  Aligned_cols=223  Identities=10%  Similarity=0.006  Sum_probs=135.7

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcE
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   87 (261)
                      ..+++.++  +..+++..+..+        ++..++......     ...... -......++++++++.+++....+.+
T Consensus        17 ~~vavd~d--G~i~v~~~~~~~--------~i~~~~~~~~~~-----~~~~~~-~~~~p~gvav~~~g~i~v~d~~~~~i   80 (260)
T d1rwia_          17 SGVAVDSA--GNVYVTSEGMYG--------RVVKLATGSTGT-----TVLPFN-GLYQPQGLAVDGAGTVYVTDFNNRVV   80 (260)
T ss_dssp             EEEEECTT--CCEEEEECSSSC--------EEEEEC----CE-----EECCCC-SCCSCCCEEECTTCCEEEEETTTEEE
T ss_pred             CEEEEcCC--CCEEEEEcCCCC--------EEEEEcCCCceE-----EEeccC-CccCceEEEEcCCCCEEEeeeeecee
Confidence            56777654  233444444555        777777665442     011112 12356789999999876665545545


Q ss_pred             EEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCC
Q 024868           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE  167 (261)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  167 (261)
                      ++++-.+...        ...........+++++++++++++-.....+..++...................++++|+++
T Consensus        81 ~~~~~~~~~~--------~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  152 (260)
T d1rwia_          81 TLAAGSNNQT--------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  152 (260)
T ss_dssp             EECTTCSCCE--------ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC
T ss_pred             eeeeecccee--------eeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC
Confidence            4443332221        12222345678999999998877766667777777654443222222334568899999999


Q ss_pred             EEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe
Q 024868          168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA  247 (261)
Q Consensus       168 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  247 (261)
                      ++++...++.|..+|............... ....+++.++|+.     .++....+.|..++.............-...
T Consensus       153 ~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~-~p~gi~~d~~g~l-----~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P  226 (260)
T d1rwia_         153 VYVTDTDNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTV-----YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTP  226 (260)
T ss_dssp             EEEEEGGGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCE-----EEEETTTTEEEEECTTCSCCEECCCCSCCCE
T ss_pred             EeeeccccccccccccccceeeeeeccccC-CCccceeeeeeee-----eeeecCCCEEEEEeCCCCeEEEEccCCCCCe
Confidence            888888888999999775543332222233 4788999999986     4666777888888876543221111122456


Q ss_pred             eEEEEeeCCCEEe
Q 024868          248 SVLSISLDGKYLA  260 (261)
Q Consensus       248 ~~~~~s~dg~~la  260 (261)
                      ..|+++++|+.++
T Consensus       227 ~~i~~d~~g~l~v  239 (260)
T d1rwia_         227 LAVAVDSDRTVYV  239 (260)
T ss_dssp             EEEEECTTCCEEE
T ss_pred             EEEEEeCCCCEEE
Confidence            8999999998654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.44  E-value=1.1e-12  Score=102.00  Aligned_cols=220  Identities=8%  Similarity=-0.035  Sum_probs=131.9

Q ss_pred             EEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeec-CCCCCceEEEECCCCCe--EEEEecCC---
Q 024868           12 WIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDD--FVCSTTNG---   85 (261)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~dg---   85 (261)
                      ..|+  ++.+++....+.        +|..+|..+.+.      ...+. .+...+..++|+|+|+.  ++..+.+.   
T Consensus        79 gtpD--Gr~lfV~d~~~~--------rVavIDl~t~k~------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          79 GRYD--GKYLFINDKANT--------RVARIRLDIMKT------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             TEEE--EEEEEEEETTTT--------EEEEEETTTTEE------EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred             ccCC--CCEEEEEcCCCC--------EEEEEECCCCcE------eeEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence            3454  355556666666        899999988764      22222 34567999999999985  33333322   


Q ss_pred             --------------cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC------------------
Q 024868           86 --------------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------------------  133 (261)
Q Consensus        86 --------------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------------  133 (261)
                                    .+..+|..+.....+.        .-.+....+.|+|||+++++.+.+                  
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI--------~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i  214 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAETMDVAWQV--------IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWV  214 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTTCSEEEEE--------EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEE
T ss_pred             cCcccccccccccceEEeecCccceeeEEE--------ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEE
Confidence                          1123444433321111        112346779999999988876533                  


Q ss_pred             -----------------------CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEE-ecCCCcEEEEEccCCcE-
Q 024868          134 -----------------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVA-  188 (261)
Q Consensus       134 -----------------------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~iwd~~~~~~-  188 (261)
                                             +.+.+++....+.+..+..+ .....+.++|||+++++ +..+++|.+||+.+.+. 
T Consensus       215 ~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~  293 (441)
T d1qnia2         215 VVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL  293 (441)
T ss_dssp             EEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             EeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH
Confidence                                   22233332333333333333 34578999999998754 66789999999864221 


Q ss_pred             ---------EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC---------C-eEEeee-----eccC
Q 024868          189 ---------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---------W-NKIGHK-----RLLR  244 (261)
Q Consensus       189 ---------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~---------~-~~~~~~-----~~~~  244 (261)
                               .........-.....+|+++|..     ..+...|.+|..|++..         . ..+..+     .+|.
T Consensus       294 ~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~-----yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~  368 (441)
T d1qnia2         294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNA-----YTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN  368 (441)
T ss_dssp             TTTSSCGGGGEEECCBCCSCEEEEEECSSSEE-----EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE
T ss_pred             hhccCCcceEEEeecccccCcccceecCCceE-----EEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCC
Confidence                     00111111222455689998865     46778899999999741         1 122222     4566


Q ss_pred             cCeeEEEEeeCCCEEeC
Q 024868          245 KPASVLSISLDGKYLAM  261 (261)
Q Consensus       245 ~~v~~~~~s~dg~~la~  261 (261)
                      ..+.+.+++|||+||++
T Consensus       369 ~~~~~~t~~pdGk~l~s  385 (441)
T d1qnia2         369 HASLTESRDADGKWLVV  385 (441)
T ss_dssp             EETTTTSTTCCCCEEEE
T ss_pred             ccccccccCCCCcEEEe
Confidence            66777889999999974

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.44  E-value=8e-11  Score=88.19  Aligned_cols=223  Identities=9%  Similarity=0.001  Sum_probs=146.5

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCc
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   86 (261)
                      +-.+++.|+   .+++++...++        +|+.++++....        .+......+.+++|++||+.+++...++.
T Consensus        30 ~e~iAv~pd---G~l~vt~~~~~--------~I~~i~p~g~~~--------~~~~~~~~~~gla~~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          30 LENLASAPD---GTIFVTNHEVG--------EIVSITPDGNQQ--------IHATVEGKVSGLAFTSNGDLVATGWNADS   90 (302)
T ss_dssp             EEEEEECTT---SCEEEEETTTT--------EEEEECTTCCEE--------EEEECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             cCCEEECCC---CCEEEEeCCCC--------EEEEEeCCCCEE--------EEEcCCCCcceEEEcCCCCeEEEecCCce
Confidence            456777774   56888887788        999999876542        23345577999999999998888888888


Q ss_pred             EEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeecc----------ccCCc
Q 024868           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP----------KAHKS  156 (261)
Q Consensus        87 i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----------~~~~~  156 (261)
                      +..++..........    ............+.+.++++++++.+.++.+..++...+.......          .....
T Consensus        91 ~~~~~~~~~~~~~~~----~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T d2p4oa1          91 IPVVSLVKSDGTVET----LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  166 (302)
T ss_dssp             CEEEEEECTTSCEEE----EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEEEecccccceee----ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccc
Confidence            999888765432221    1112234567899999999998888888889888877664322111          11123


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEEccCCcEE---EEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW---TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      ...+.++. +.++++.+..+.|..++.......   .... ... ....++++++|+.     .++...++.|..++...
T Consensus       167 ~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-~pdgia~d~dG~l-----~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         167 ANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQT-NIDDFAFDVEGNL-----YGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESC-CCSSEEEBTTCCE-----EEECBTTCCEEEECTTC
T ss_pred             cccccccC-CceeeecCCCCeEEecccccccccccccccc-CCC-CCcceEECCCCCE-----EEEEcCCCcEEEECCCC
Confidence            45666653 345556667788888887654322   1121 122 3667999999986     35555677899998764


Q ss_pred             CeE-EeeeeccCcCeeEEEE---eeCCCEEe
Q 024868          234 WNK-IGHKRLLRKPASVLSI---SLDGKYLA  260 (261)
Q Consensus       234 ~~~-~~~~~~~~~~v~~~~~---s~dg~~la  260 (261)
                      ... +......-...++++|   ++|++.|.
T Consensus       239 ~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         239 STTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             CEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             CEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence            332 2222223345789999   67888764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.42  E-value=6.3e-11  Score=91.13  Aligned_cols=213  Identities=8%  Similarity=0.054  Sum_probs=125.1

Q ss_pred             ceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCe
Q 024868           36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ  115 (261)
Q Consensus        36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v  115 (261)
                      .|.++.||.++..+..  ... ........+..++++|+++.|.+... +.+..|.+.............     .....
T Consensus        15 ~i~~~~fd~~~~~l~~--~~~-~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~-----~~~~p   85 (365)
T d1jofa_          15 AIFTVQFDDEKLTCKL--IKR-TEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHP-----IGGHP   85 (365)
T ss_dssp             EEEEEEEETTTTEEEE--EEE-EECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEE-----CCSSG
T ss_pred             CEEEEEEcCCCCeEEE--eee-eeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeec-----CCCCc
Confidence            3577888888877621  111 12223455778999999999887754 568888887543212111111     12234


Q ss_pred             EEEEEeeCCcEE--EEec-cCCeEEEEEccCc-------------e---EEeec-cccCCceeEEEEcCCCCEEEEecC-
Q 024868          116 KCLSFSVDGSRF--AAGG-VDGHLRIMHWPSL-------------R---IILDE-PKAHKSVLDMDFSLDSEFLATTST-  174 (261)
Q Consensus       116 ~~~~~s~~~~~l--~~~~-~d~~i~~~d~~~~-------------~---~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~-  174 (261)
                      ..+.++++++.+  +++. ..+.+..+.+...             +   ..... ......+.++.|+|||++++++.. 
T Consensus        86 ~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g  165 (365)
T d1jofa_          86 RANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT  165 (365)
T ss_dssp             GGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC
Confidence            567788888743  3332 2345554433211             0   00110 111224789999999998887754 


Q ss_pred             CCcEEEEEccC-CcEEE--EEe-ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEE--eeeec------
Q 024868          175 DGSARIWKTED-GVAWT--FLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRL------  242 (261)
Q Consensus       175 d~~i~iwd~~~-~~~~~--~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~--~~~~~------  242 (261)
                      ...|.+|+... +....  ... ...+...+.++|+|+++++|    ++...+++|.+||+..++..  .....      
T Consensus       166 ~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~y----v~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~  241 (365)
T d1jofa_         166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY----ALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE----EEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEE----EeccCCCEEEEEEecCCCceEEEEeeeeccccc
Confidence            45788887654 33221  111 12234589999999999843    56677889999998765422  11110      


Q ss_pred             -----------cCcCeeEEEEeeCCCEEeC
Q 024868          243 -----------LRKPASVLSISLDGKYLAM  261 (261)
Q Consensus       243 -----------~~~~v~~~~~s~dg~~la~  261 (261)
                                 .......+.++|||++|++
T Consensus       242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         242 GIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             cccccccccccccCCccceEECCCCCEEEE
Confidence                       0123457899999999863

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=2.1e-12  Score=98.71  Aligned_cols=138  Identities=12%  Similarity=0.035  Sum_probs=102.0

Q ss_pred             EEEeeCCcEEEEec-----cCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec----------CCCcEEEEE
Q 024868          118 LSFSVDGSRFAAGG-----VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS----------TDGSARIWK  182 (261)
Q Consensus       118 ~~~s~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~iwd  182 (261)
                      .+.+||++.+++..     .+..+++||..+++.+..+..+.  ...++|||||++|++.+          .|+.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            35689999887653     45679999999998877665433  34799999999887643          468899999


Q ss_pred             ccCCcEEEEEeecCC------CceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC-------cCeeE
Q 024868          183 TEDGVAWTFLTRNSD------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASV  249 (261)
Q Consensus       183 ~~~~~~~~~~~~~~~------~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-------~~v~~  249 (261)
                      +.+++.+..+..+..      .....++|+|++++++   ++..+.+..+.+||..+++.+..+....       .....
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL---FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  161 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEE---EEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeE---EecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence            999999887764332      1245689999999843   3445667889999999998876655432       23456


Q ss_pred             EEEeeCCCEEe
Q 024868          250 LSISLDGKYLA  260 (261)
Q Consensus       250 ~~~s~dg~~la  260 (261)
                      +.+++||+.++
T Consensus       162 ~~~~~dg~~~~  172 (355)
T d2bbkh_         162 FMHCRDGSLAK  172 (355)
T ss_dssp             EEEETTSCEEE
T ss_pred             EEEcCCCCEEE
Confidence            78999988764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.40  E-value=5.6e-11  Score=91.41  Aligned_cols=196  Identities=10%  Similarity=0.074  Sum_probs=110.7

Q ss_pred             CCceEEEECCCCCeEEE--Ee-cCCcEEEEEEeCCccccceee--------e--eCCCCCCCCCeEEEEEeeCCcEEEEe
Q 024868           64 GDPMTIAVNPSGDDFVC--ST-TNGGCKLFEVYGGATDINLLA--------K--KMPPLQDAGPQKCLSFSVDGSRFAAG  130 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~--~~-~dg~i~i~~~~~~~~~~~~~~--------~--~~~~~~~~~~v~~~~~s~~~~~l~~~  130 (261)
                      .....++++++++.+..  .. ..+++..+.+...........        .  ..........+.++.|+|||++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~  162 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence            45667888999885433  22 235566555433211000000        0  00011122347899999999988887


Q ss_pred             c-cCCeEEEEEccCceEEe-----eccccCCceeEEEEcCCCCEEEEec-CCCcEEEEEccCCcEEE--EEeec------
Q 024868          131 G-VDGHLRIMHWPSLRIIL-----DEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWT--FLTRN------  195 (261)
Q Consensus       131 ~-~d~~i~~~d~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~--~~~~~------  195 (261)
                      + ....|.+|+......+.     .........+.++|+|++++++... .++.|.+|+...++...  .....      
T Consensus       163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~  242 (365)
T d1jofa_         163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc
Confidence            5 34578888765432211     1122334689999999999886554 57899999987654321  11100      


Q ss_pred             ----------CCCceEEEEEecCCCcceEEEEEee---CCCcEEEEEECCCCeEEee------eeccCcCeeEEEEee-C
Q 024868          196 ----------SDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDISTWNKIGH------KRLLRKPASVLSISL-D  255 (261)
Q Consensus       196 ----------~~~~v~~~~~~p~~~~~~~~~~~~~---~~d~~i~~~d~~~~~~~~~------~~~~~~~v~~~~~s~-d  255 (261)
                                .......+.++|||+++|.  ...+   .....|..|++.....+..      ..........++++| +
T Consensus       243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyv--snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~  320 (365)
T d1jofa_         243 IPDRDPETGKGLYRADVCALTFSGKYMFA--SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEE--EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred             ccccccccccccCCccceEECCCCCEEEE--EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCC
Confidence                      0112457899999998432  1111   1233577888764322211      112234567899998 8


Q ss_pred             CCEEeC
Q 024868          256 GKYLAM  261 (261)
Q Consensus       256 g~~la~  261 (261)
                      |++|++
T Consensus       321 G~~l~v  326 (365)
T d1jofa_         321 DEWMAI  326 (365)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            998863

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=4e-11  Score=93.10  Aligned_cols=157  Identities=8%  Similarity=-0.035  Sum_probs=105.9

Q ss_pred             CCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcE--EEEeccCC------
Q 024868           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR--FAAGGVDG------  134 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~d~------  134 (261)
                      ........+|||++|++.. .+.+|.++|+.+.+....      ........+..++|+|+|+.  ++..+.+.      
T Consensus        72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~i------i~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKI------THIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEE------EECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeE------EecCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            3445555679999997665 468899999998764221      12333467889999999984  44333221      


Q ss_pred             -----------eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCC----------------------------
Q 024868          135 -----------HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----------------------------  175 (261)
Q Consensus       135 -----------~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------------------  175 (261)
                                 .+..+|..+.+...+... .+....+.|+|+|+++++.+.+                            
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence                       234577777766555443 3457889999999988877643                            


Q ss_pred             -------------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          176 -------------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       176 -------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                                   +.+.+++....+.+..+..+.  ....+.++|||+++    .+++..++++.+||+++
T Consensus       225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk--sPhGv~vSPDGkyl----~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK--NPHGLNTSPDGKYF----IANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS--SCCCEEECTTSCEE----EEECTTSSBEEEEEGGG
T ss_pred             EecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC--CccCceECCCCCEE----EEeCCcCCcEEEEEeeh
Confidence                         233444444445555555433  36789999999984    47788999999999865

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.34  E-value=5.5e-09  Score=78.56  Aligned_cols=226  Identities=15%  Similarity=0.148  Sum_probs=136.6

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC--C
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--G   85 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g   85 (261)
                      -.++|.++   .++.++--..+        +|+.+++++...      .............+++++||+.+++...+  .
T Consensus        43 EG~~~D~~---G~Ly~~D~~~g--------~I~ri~p~g~~~------~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~  105 (319)
T d2dg1a1          43 EGLNFDRQ---GQLFLLDVFEG--------NIFKINPETKEI------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKS  105 (319)
T ss_dssp             EEEEECTT---SCEEEEETTTC--------EEEEECTTTCCE------EEEEECSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred             EeCEECCC---CCEEEEECCCC--------EEEEEECCCCeE------EEEEeCCCCCeeEEEECCCCCEEEEecCCCcc
Confidence            46677653   45666666666        899999987653      22333445568899999999877765432  3


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc------CCeEEEEEccCceEEeeccccCCceeE
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVLD  159 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~v~~  159 (261)
                      ...++.+..........   ............+++.++|++.++...      .+.+..++.... .+......-.....
T Consensus       106 ~~~i~~~~~~~~~~~~~---~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnG  181 (319)
T d2dg1a1         106 TGGIFAATENGDNLQDI---IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANG  181 (319)
T ss_dssp             CCEEEEECTTSCSCEEE---ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEE
T ss_pred             ceeEEEEcCCCceeeee---ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeee
Confidence            34455444332211111   111222346788999999987666422      233555554332 22222222234678


Q ss_pred             EEEcCCCCEEE-EecCCCcEEEEEccCC-cEEEE----E--eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEEC
Q 024868          160 MDFSLDSEFLA-TTSTDGSARIWKTEDG-VAWTF----L--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (261)
Q Consensus       160 ~~~s~~~~~l~-~~~~d~~i~iwd~~~~-~~~~~----~--~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~  231 (261)
                      ++|+|+++.|+ +-+..+.|+.||+... .....    .  ..........+++.++|+.     .++....+.|.+||.
T Consensus       182 ia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l-----~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         182 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL-----YVAMYGQGRVLVFNK  256 (319)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE-----EEEEETTTEEEEECT
T ss_pred             eeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE-----EEEEcCCCEEEEECC
Confidence            99999998664 4556789999998642 21111    1  1111123568999999986     355556789999995


Q ss_pred             CCCeEEeeeeccC------cCeeEEEEeeCCCEEe
Q 024868          232 STWNKIGHKRLLR------KPASVLSISLDGKYLA  260 (261)
Q Consensus       232 ~~~~~~~~~~~~~------~~v~~~~~s~dg~~la  260 (261)
                       .|+.+..+....      ..+.+++|.+++..+.
T Consensus       257 -~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         257 -RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             -TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             -CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEE
Confidence             688776665332      2467899988876553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.33  E-value=8.6e-10  Score=82.83  Aligned_cols=211  Identities=11%  Similarity=0.069  Sum_probs=127.0

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC  117 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~  117 (261)
                      +|+.||+.+........  .......+....++|.++++.++++...+.+..++.++.....  ..... .-......+.
T Consensus        47 ~I~r~d~~~~~~~~~~~--~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~--~~~~~-~g~~~~~pnd  121 (314)
T d1pjxa_          47 EILRIDLKTGKKTVICK--PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEI--AKKDS-EGRRMQGCND  121 (314)
T ss_dssp             EEEEECTTTCCEEEEEC--CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEEC--CSBCT-TSCBCBCCCE
T ss_pred             EEEEEECCCCcEEEEEC--CccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEE--Eeccc-cccccCCCcE
Confidence            78999998776411000  0011112346789999999988887777778888776543211  00000 0000123578


Q ss_pred             EEEeeCCcEEEEecc---------------CCeEEEEEccCceEEeeccccCCceeEEEEcCCCC-----EEEEecCCCc
Q 024868          118 LSFSVDGSRFAAGGV---------------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-----FLATTSTDGS  177 (261)
Q Consensus       118 ~~~s~~~~~l~~~~~---------------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~~~~d~~  177 (261)
                      +++.++|++.++-..               .|.|+.++. .++.. .....-.....++|+|++.     ++++-+..+.
T Consensus       122 l~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~  199 (314)
T d1pjxa_         122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK  199 (314)
T ss_dssp             EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred             EEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCcee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccc
Confidence            999999988776421               234444443 23322 2222223346889998764     4455567788


Q ss_pred             EEEEEccCCcEEE------EEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEE
Q 024868          178 ARIWKTEDGVAWT------FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS  251 (261)
Q Consensus       178 i~iwd~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  251 (261)
                      |..||+.....+.      .+..........+++.++|+.     .++....+.|.+||.+.++.+..+......+++++
T Consensus       200 i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gnl-----yVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~a  274 (314)
T d1pjxa_         200 LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL-----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH  274 (314)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE-----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred             eEEeeccCccccceeeEEEEccccccccceeeEEecCCcE-----EEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEE
Confidence            9999876433222      111111223568999999986     24444567899999988776655665556788999


Q ss_pred             EeeCCCEEe
Q 024868          252 ISLDGKYLA  260 (261)
Q Consensus       252 ~s~dg~~la  260 (261)
                      |.||++.|.
T Consensus       275 fg~d~~~ly  283 (314)
T d1pjxa_         275 FKPQTKTIF  283 (314)
T ss_dssp             ECTTSSEEE
T ss_pred             EeCCCCEEE
Confidence            999998653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-10  Score=92.31  Aligned_cols=209  Identities=11%  Similarity=0.089  Sum_probs=123.8

Q ss_pred             EEEEEcCCCCceecCCeEEeeecC---CCCCceEEEECCCCCeEEEEec---------CCcEEEEEEeCCccccceeeee
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAVNPSGDDFVCSTT---------NGGCKLFEVYGGATDINLLAKK  105 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~~~~~~~~~~~~~~~~  105 (261)
                      .++.+|..++..      ...+..   ..-.+....||||+++++....         .+.+.++|+.++.... +    
T Consensus        38 ~i~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l----  106 (465)
T d1xfda1          38 TVRLWNVETNTS------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-L----  106 (465)
T ss_dssp             CEEEBCGGGCCC------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-C----
T ss_pred             cEEEEECCCCCE------EEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee-c----
Confidence            577888766542      112222   2235778889999999887643         4678899998776311 0    


Q ss_pred             CCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeeccccCC-ce-----------------eEEEEcCCCC
Q 024868          106 MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SV-----------------LDMDFSLDSE  167 (261)
Q Consensus       106 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v-----------------~~~~~s~~~~  167 (261)
                      .........+....|||||+.||.. .++.|++.+...+..++....... .+                 ..+.|||||+
T Consensus       107 ~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk  185 (465)
T d1xfda1         107 DPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT  185 (465)
T ss_dssp             CCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred             cCccCCccccceeeeccCCceEEEE-ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCC
Confidence            1111123456668999999999988 577899988877665443332221 11                 4678999999


Q ss_pred             EEEEecC-CCc---------------------------------EEEEEccCCcEEEEEeec-----CCCceEEEEEecC
Q 024868          168 FLATTST-DGS---------------------------------ARIWKTEDGVAWTFLTRN-----SDEKIELCRFSKD  208 (261)
Q Consensus       168 ~l~~~~~-d~~---------------------------------i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~p~  208 (261)
                      +||.... +..                                 +.++|+.++.........     ...-+..+.|+|+
T Consensus       186 ~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d  265 (465)
T d1xfda1         186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS  265 (465)
T ss_dssp             EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred             eEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC
Confidence            9997642 222                                 344444433221111110     1112567899999


Q ss_pred             CCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec-cCcC----eeEEEEeeCCCEE
Q 024868          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKP----ASVLSISLDGKYL  259 (261)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~----v~~~~~s~dg~~l  259 (261)
                      ++. ++...--......+.++|..+++....... ....    -....|+|||+.+
T Consensus       266 ~~~-~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         266 TKV-AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             SEE-EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             CeE-EEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            874 322222233445788999999876533322 2222    2357899998854

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=3.5e-08  Score=72.58  Aligned_cols=160  Identities=11%  Similarity=0.120  Sum_probs=110.6

Q ss_pred             CCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (261)
Q Consensus        62 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~  141 (261)
                      .......+++.++|+.+++....+.+.+++......  ..    .....+......+++.++++.+++....+.|++||.
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~--~~----~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~  185 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL--HK----FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY  185 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE--EE----EECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccCCcee--ec----ccccccccccceeeeccceeEEeeeccccceeeeec
Confidence            345678899999998777766667677776543221  11    111223456788999999998888888899999995


Q ss_pred             cCceEEeecc--ccCCceeEEEEcCCCCEEEEecC-CCcEEEEEccCCcEEEEEeecC-CCceEEEEEecCCCcceEEEE
Q 024868          142 PSLRIILDEP--KAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCT  217 (261)
Q Consensus       142 ~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~  217 (261)
                       +++.+..+-  ........+++.++|+++++-.. ++.|.+|+ .+|+.+.++.... ....+.+++.|+|..     +
T Consensus       186 -~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l-----~  258 (279)
T d1q7fa_         186 -EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSV-----V  258 (279)
T ss_dssp             -TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEE-----E
T ss_pred             -CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcE-----E
Confidence             455544442  22235789999999997777544 45799998 4688777765433 224789999999974     2


Q ss_pred             EeeCCCcEEEEEECCCCe
Q 024868          218 VQRGDKALLAVYDISTWN  235 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~~  235 (261)
                      ++ ..++.|++|......
T Consensus       259 V~-~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         259 LA-SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EE-ETTTEEEEEECSCCC
T ss_pred             EE-eCCCeEEEEEeeeec
Confidence            33 457889999987654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=5.3e-08  Score=71.60  Aligned_cols=227  Identities=9%  Similarity=0.041  Sum_probs=137.1

Q ss_pred             eEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCC-eEEEE-ecCC
Q 024868            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS-TTNG   85 (261)
Q Consensus         8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg   85 (261)
                      ..+++.++   .+++++-..+.        +|..||++...+...+.. ..-.+.......+++.++.. .+++. +.++
T Consensus        26 ~gvavd~d---g~i~VaD~~n~--------rI~v~d~~G~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~   93 (279)
T d1q7fa_          26 SGVAVNAQ---NDIIVADTNNH--------RIQIFDKEGRFKFQFGEC-GKRDSQLLYPNRVAVVRNSGDIIVTERSPTH   93 (279)
T ss_dssp             EEEEECTT---CCEEEEEGGGT--------EEEEECTTSCEEEEECCB-SSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred             cEEEEcCC---CCEEEEECCCC--------EEEEEeCCCCEEEEeccc-CCCcccccccccccccccccccceeccCCcc
Confidence            45666653   44666555555        788888775432100000 00001112345566655443 34333 2334


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEEeec--cccCCceeEEEEc
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--PKAHKSVLDMDFS  163 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~s  163 (261)
                      .|..++......  ...     ..........+++.++|+.+++....+.+.+++. +++.+..+  ..+......+++.
T Consensus        94 ~i~~~~~~g~~~--~~~-----~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d  165 (279)
T d1q7fa_          94 QIQIYNQYGQFV--RKF-----GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVN  165 (279)
T ss_dssp             EEEEECTTSCEE--EEE-----CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEEC
T ss_pred             ccccccccccce--eec-----CCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeec
Confidence            565555433211  100     1122345678999999998888777788888885 45544433  2233467889999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCCcEEEEEeec-CCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeec
Q 024868          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (261)
Q Consensus       164 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  242 (261)
                      ++++.+++....+.|++||. +++.+.++... .......+++.|+|+. |   ++-...++.|.+|+. +|+.+..+..
T Consensus       166 ~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i-~---Vad~~~~~~v~~f~~-~G~~~~~~~~  239 (279)
T d1q7fa_         166 DKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEI-L---IADNHNNFNLTIFTQ-DGQLISALES  239 (279)
T ss_dssp             SSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCE-E---EEECSSSCEEEEECT-TSCEEEEEEE
T ss_pred             cceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeE-E---EEECCCCcEEEEECC-CCCEEEEEeC
Confidence            99998888888899999996 46766666321 2224789999999985 2   233344567999995 5776655543


Q ss_pred             c--CcCeeEEEEeeCCCEEe
Q 024868          243 L--RKPASVLSISLDGKYLA  260 (261)
Q Consensus       243 ~--~~~v~~~~~s~dg~~la  260 (261)
                      .  ......+++.|||++++
T Consensus       240 ~~~~~~p~~vav~~dG~l~V  259 (279)
T d1q7fa_         240 KVKHAQCFDVALMDDGSVVL  259 (279)
T ss_dssp             SSCCSCEEEEEEETTTEEEE
T ss_pred             CCCCCCEeEEEEeCCCcEEE
Confidence            2  24578999999998664

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.15  E-value=2e-10  Score=88.34  Aligned_cols=142  Identities=7%  Similarity=-0.144  Sum_probs=99.0

Q ss_pred             CCeEEEEEeeCCcEE--EE-eccCC--eEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec----------CCCc
Q 024868          113 GPQKCLSFSVDGSRF--AA-GGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS----------TDGS  177 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l--~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~  177 (261)
                      ++...++..++++..  +. ...++  .++++|..+++.+.....+..  ..++|+|||+.|++.+          .|+.
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL--SLAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC--CcceECCCCCEEEEEcccCccccccccCCe
Confidence            444555667777753  32 23344  477779888887766554443  3689999999888754          3678


Q ss_pred             EEEEEccCCcEEEEEeecCCC------ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccC-------
Q 024868          178 ARIWKTEDGVAWTFLTRNSDE------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------  244 (261)
Q Consensus       178 i~iwd~~~~~~~~~~~~~~~~------~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-------  244 (261)
                      |++||..+++++..+..+...      ....++|+|||+++    +++...++.+.+||+.+++.+.....+.       
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l----~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  173 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL----LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPG  173 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCE----EEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEE
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEE----EEEeCCCCeEEEEECCCCcEeEEeeccCcceEccC
Confidence            999999999998887654321      23468999999984    2445567899999999998876655433       


Q ss_pred             cCeeEEEEeeCCCEEe
Q 024868          245 KPASVLSISLDGKYLA  260 (261)
Q Consensus       245 ~~v~~~~~s~dg~~la  260 (261)
                      .....+.+++||+.++
T Consensus       174 ~~~~~v~~~~Dg~~~~  189 (368)
T d1mdah_         174 AAATHYLGSCPASLAA  189 (368)
T ss_dssp             ETTEEECCCCTTSCEE
T ss_pred             CCceEEEEcCCCCEEE
Confidence            2334577788887654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.15  E-value=1.1e-08  Score=76.68  Aligned_cols=157  Identities=11%  Similarity=0.068  Sum_probs=101.3

Q ss_pred             CceEEEECCCCCeEEEEecC-------------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCc-----E
Q 024868           65 DPMTIAVNPSGDDFVCSTTN-------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-----R  126 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d-------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~  126 (261)
                      .+..+++.++|+..++-...             ..=.+|.+...........       .....+.++|+|++.     +
T Consensus       118 ~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~-------~~~~pNGi~~~~d~d~~~~~l  190 (314)
T d1pjxa_         118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT-------AFQFPNGIAVRHMNDGRPYQL  190 (314)
T ss_dssp             CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE-------EESSEEEEEEEECTTSCEEEE
T ss_pred             CCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeC-------CcceeeeeEECCCCCcceeEE
Confidence            36789999999877763210             1123444432221111111       112347899999764     4


Q ss_pred             EEEeccCCeEEEEEccCceEEe------ecccc-CCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCc
Q 024868          127 FAAGGVDGHLRIMHWPSLRIIL------DEPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK  199 (261)
Q Consensus       127 l~~~~~d~~i~~~d~~~~~~~~------~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  199 (261)
                      +++-+..+.|+.||+.....+.      ..... ......+++.++|++.++....+.|.+||.+.++.+..+..+.. .
T Consensus       191 yv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~-~  269 (314)
T d1pjxa_         191 IVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-K  269 (314)
T ss_dssp             EEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-C
T ss_pred             EEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCC-C
Confidence            4445677889999876432221      11111 22457899999999888877789999999988877766665444 4


Q ss_pred             eEEEEEecCCCcceEEEEEeeCCCcEEEEEECCC
Q 024868          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       200 v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      +++++|.||++.+|    ++.+.++.|..+++..
T Consensus       270 ~t~~afg~d~~~ly----Vt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         270 PSNLHFKPQTKTIF----VTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEECTTSSEEE----EEETTTTEEEEEECSS
T ss_pred             EEEEEEeCCCCEEE----EEECCCCcEEEEECCC
Confidence            88999999998643    5667788999988754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=1.6e-08  Score=73.67  Aligned_cols=156  Identities=10%  Similarity=0.044  Sum_probs=102.4

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~  143 (261)
                      ..+.++++.++++.+++-.....+..++......  .     ............++++|+++.+++...++.|..++...
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~--~-----~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--T-----VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--E-----ECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eecccccccccceeEeecccccccccccccccee--e-----eeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            4678999999998776654555566555444321  0     11112234457899999999888877888899999765


Q ss_pred             ceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC
Q 024868          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (261)
Q Consensus       144 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d  223 (261)
                      ..........-.....+++.++|+++++....+.|..++...... ..+....-.....++++++|..     .++...+
T Consensus       171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l-----~vad~~~  244 (260)
T d1rwia_         171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTV-----YVADRGN  244 (260)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCE-----EEEEGGG
T ss_pred             ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCE-----EEEECCC
Confidence            544333233345678999999999888888888888887654432 3332222224789999999875     3454556


Q ss_pred             cEEEEEECC
Q 024868          224 ALLAVYDIS  232 (261)
Q Consensus       224 ~~i~~~d~~  232 (261)
                      ++|+.++..
T Consensus       245 ~rI~~i~~~  253 (260)
T d1rwia_         245 DRVVKLTSL  253 (260)
T ss_dssp             TEEEEECCC
T ss_pred             CEEEEEeCC
Confidence            667665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.14  E-value=8.9e-08  Score=70.95  Aligned_cols=219  Identities=12%  Similarity=0.032  Sum_probs=137.1

Q ss_pred             EEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEE
Q 024868           12 WIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE   91 (261)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~   91 (261)
                      |.++  .+.+..+--..+        +|+.||+.++..     ....+   ...+.++++.++|.++++ +.+| +.++|
T Consensus        25 wd~~--~~~l~wvDi~~~--------~I~r~d~~~g~~-----~~~~~---~~~~~~i~~~~dg~l~va-~~~g-l~~~d   84 (295)
T d2ghsa1          25 FDPA--SGTAWWFNILER--------ELHELHLASGRK-----TVHAL---PFMGSALAKISDSKQLIA-SDDG-LFLRD   84 (295)
T ss_dssp             EETT--TTEEEEEEGGGT--------EEEEEETTTTEE-----EEEEC---SSCEEEEEEEETTEEEEE-ETTE-EEEEE
T ss_pred             EECC--CCEEEEEECCCC--------EEEEEECCCCeE-----EEEEC---CCCcEEEEEecCCCEEEE-EeCc-cEEee
Confidence            5553  244554444455        899999988763     11222   346788999988876654 4555 88999


Q ss_pred             EeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc----CCeEEEEEccCceEEeeccccCCceeEEEEcCCCC
Q 024868           92 VYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE  167 (261)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  167 (261)
                      ..+++...  +.. .........++++.+.|+|++.++...    .+.-.+|.+..++... ..........+.|+++++
T Consensus        85 ~~tg~~~~--l~~-~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~-~~~~~~~~Ng~~~s~d~~  160 (295)
T d2ghsa1          85 TATGVLTL--HAE-LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK-LFADISIPNSICFSPDGT  160 (295)
T ss_dssp             TTTCCEEE--EEC-SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE-EEEEESSEEEEEECTTSC
T ss_pred             cccceeeE--Eee-eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE-EeeccCCcceeeecCCCc
Confidence            88776311  111 111112346789999999987666432    2345666666665432 233333567899999998


Q ss_pred             EEE-EecCCCcEEEEEccC------CcEEEEEe-ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee
Q 024868          168 FLA-TTSTDGSARIWKTED------GVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (261)
Q Consensus       168 ~l~-~~~~d~~i~iwd~~~------~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  239 (261)
                      .++ +-+..+.|..|++..      ++...... .........+++..+|..     .++.-..+.|..||. .++.+..
T Consensus       161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gnl-----Wva~~~~g~V~~~dp-~G~~~~~  234 (295)
T d2ghsa1         161 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-----WNARWGEGAVDRYDT-DGNHIAR  234 (295)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-----EEEEETTTEEEEECT-TCCEEEE
T ss_pred             eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCE-----EeeeeCCCceEEecC-CCcEeeE
Confidence            654 555678899998752      11111111 112334788999999985     233334568999995 6788877


Q ss_pred             eeccCcCeeEEEEe-eCCCEEe
Q 024868          240 KRLLRKPASVLSIS-LDGKYLA  260 (261)
Q Consensus       240 ~~~~~~~v~~~~~s-~dg~~la  260 (261)
                      +......+++++|- ||.+.|.
T Consensus       235 i~lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         235 YEVPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             EECSCSBEEEEEEESTTSCEEE
T ss_pred             ecCCCCceEEEEEeCCCCCEEE
Confidence            77666678999996 6766654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=2.4e-09  Score=79.98  Aligned_cols=181  Identities=14%  Similarity=0.104  Sum_probs=118.4

Q ss_pred             CceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCc
Q 024868           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  144 (261)
                      .+..++++|||+++++...+++|+.++......  .       .......+.+++|+|||+++++...++.+..++....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~-------~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--I-------HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--E-------EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--E-------EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence            578899999999888887788777776443321  1       1122357899999999998888877888888776543


Q ss_pred             eE-Eeec--cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecC---------CCceEEEEEecCCCcc
Q 024868          145 RI-ILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------DEKIELCRFSKDGTKP  212 (261)
Q Consensus       145 ~~-~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~v~~~~~~p~~~~~  212 (261)
                      .. ....  .........+.+.++++++++.+.++.+..+|...+..........         ......+.++  +..+
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l  177 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFL  177 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEE
T ss_pred             ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCce
Confidence            21 1111  1223457899999999999998888999999988765433322110         1124455554  4443


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEee--eeccCcCeeEEEEeeCCCEEe
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLDGKYLA  260 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~s~dg~~la  260 (261)
                          .++....+.|+.++.........  ..........+++++||++.+
T Consensus       178 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v  223 (302)
T d2p4oa1         178 ----YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG  223 (302)
T ss_dssp             ----EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE
T ss_pred             ----eeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEE
Confidence                35667788999999875433211  112234456788988888654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.11  E-value=9.2e-09  Score=75.48  Aligned_cols=204  Identities=9%  Similarity=0.016  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CC-----cEEEEEEeCCccccceeeeeCCCCCC
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NG-----GCKLFEVYGGATDINLLAKKMPPLQD  111 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~  111 (261)
                      .||.+|..++.       ...+..+.+.+...+|||||++|+.... ++     .|.+++..++.... +..........
T Consensus        22 dl~~~d~~~g~-------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~~~~~~~~   93 (281)
T d1k32a2          22 DLWEHDLKSGS-------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-ITYFSGKSTGR   93 (281)
T ss_dssp             EEEEEETTTCC-------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CCCCCEEEETT
T ss_pred             cEEEEECCCCC-------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-eeecCCCccCc
Confidence            79999998877       3346667778899999999999986543 22     35555655554311 10000000011


Q ss_pred             CCCeEEEEEeeCCcEEEEecc------CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCC---------
Q 024868          112 AGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG---------  176 (261)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---------  176 (261)
                      ........|+|||+.|+....      ...+...+...+.....   .........+.+++..++....+.         
T Consensus        94 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (281)
T d1k32a2          94 RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGG  170 (281)
T ss_dssp             EECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCST
T ss_pred             cccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccccceeeeeccC
Confidence            124567899999999887642      22355556554444222   122233343444444444433221         


Q ss_pred             --cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEee
Q 024868          177 --SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (261)
Q Consensus       177 --~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~  254 (261)
                        ................. ... ......++++...    ..........|+++|+.+++... +... .......|||
T Consensus       171 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~----~~~~~~~~~~l~~~d~~g~~~~~-lt~~-~~~~~~~~Sp  242 (281)
T d1k32a2         171 TRGKIWIEVNSGAFKKIVD-MST-HVSSPVIVGHRIY----FITDIDGFGQIYSTDLDGKDLRK-HTSF-TDYYPRHLNT  242 (281)
T ss_dssp             TCCEEEEEEETTEEEEEEC-CSS-CCEEEEEETTEEE----EEECTTSSCEEEEEETTSCSCEE-CCCC-CSSCEEEEEE
T ss_pred             CcceeeeeccccceeeccC-Ccc-ccceeeeeccccc----eecccccccceEEEeCCCCceEE-eecC-CCcccccCcC
Confidence              12222333333332222 222 2455666665322    12223345579999998766442 3222 2223457999


Q ss_pred             CCCEEe
Q 024868          255 DGKYLA  260 (261)
Q Consensus       255 dg~~la  260 (261)
                      ||+.|+
T Consensus       243 DG~~I~  248 (281)
T d1k32a2         243 DGRRIL  248 (281)
T ss_dssp             SSSCEE
T ss_pred             CCCEEE
Confidence            999886

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.2e-08  Score=78.13  Aligned_cols=217  Identities=13%  Similarity=0.080  Sum_probs=116.1

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCC--------
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL--------  109 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~--------  109 (261)
                      .++.+|..++...    ...........+....|||||+.+|... ++.|++.+..++..............        
T Consensus        92 ~~~i~d~~~~~~~----~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~v  166 (465)
T d1xfda1          92 YYVLSKIPHGDPQ----SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (465)
T ss_dssp             EEEEEESSSCCCE----ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             cEEEEEccCCcee----eccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchh
Confidence            6778888776531    0111122334566789999999998864 66688887766543111110000000        


Q ss_pred             ---CCCCCeEEEEEeeCCcEEEEecc-CC---------------------------------eEEEEEccCceEEeeccc
Q 024868          110 ---QDAGPQKCLSFSVDGSRFAAGGV-DG---------------------------------HLRIMHWPSLRIILDEPK  152 (261)
Q Consensus       110 ---~~~~~v~~~~~s~~~~~l~~~~~-d~---------------------------------~i~~~d~~~~~~~~~~~~  152 (261)
                         ...+.-..+.|||||++||.... +.                                 .+.++|+..+........
T Consensus       167 yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~  246 (465)
T d1xfda1         167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP  246 (465)
T ss_dssp             HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred             hhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEec
Confidence               00112256789999999998642 11                                 244555544332111111


Q ss_pred             ------cCCceeEEEEcCCCCEEEEecC-C---CcEEEEEccCCcEEEEEeecCCCce----EEEEEecCCCcceEEEEE
Q 024868          153 ------AHKSVLDMDFSLDSEFLATTST-D---GSARIWKTEDGVAWTFLTRNSDEKI----ELCRFSKDGTKPFLFCTV  218 (261)
Q Consensus       153 ------~~~~v~~~~~s~~~~~l~~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~~~~~~~~  218 (261)
                            ....+..+.|+|++++++.... +   ..+.++|..++++...+.......|    ....|+|||+.++++...
T Consensus       247 ~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s  326 (465)
T d1xfda1         247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI  326 (465)
T ss_dssp             CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred             cCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEee
Confidence                  1113678899999986665432 2   3588899999987766654443322    346799999974321111


Q ss_pred             eeCCCcEEEEEECC------CCeEEeeeeccCcCeeEE-EEeeCCCEE
Q 024868          219 QRGDKALLAVYDIS------TWNKIGHKRLLRKPASVL-SISLDGKYL  259 (261)
Q Consensus       219 ~~~~d~~i~~~d~~------~~~~~~~~~~~~~~v~~~-~~s~dg~~l  259 (261)
                      .-+.-+.++.+++.      .++.+..+....-.|..+ .|+++++.|
T Consensus       327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~v  374 (465)
T d1xfda1         327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI  374 (465)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred             eecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEE
Confidence            11222234444432      222233333333445554 577777665

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.93  E-value=5.7e-07  Score=67.29  Aligned_cols=158  Identities=12%  Similarity=0.010  Sum_probs=97.5

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc----CCeEEE
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----DGHLRI  138 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i~~  138 (261)
                      ...+..++|.++|+.+++-...++|+.|+..+......       ..........+++++||+++++...    .+.+..
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~-------~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~  111 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  111 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE-------EeCCCCCeeEEEECCCCCEEEEecCCCccceeEEE
Confidence            33457899999998766666778888887766542111       1122345789999999998776532    234555


Q ss_pred             EEccCceEEeeccc--cCCceeEEEEcCCCCEEEEecCC------CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCC
Q 024868          139 MHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (261)
Q Consensus       139 ~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~  210 (261)
                      .+............  .......+.+.|+|++.++....      +.+..++... +.+..+..... ..+.++|+|+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~-~pnGia~s~dg~  189 (319)
T d2dg1a1         112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNIS-VANGIALSTDEK  189 (319)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEES-SEEEEEECTTSS
T ss_pred             EcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccc-eeeeeeeccccc
Confidence            55544433222211  12357789999999977764321      2354455433 33333332223 378899999999


Q ss_pred             cceEEEEEeeCCCcEEEEEECCC
Q 024868          211 KPFLFCTVQRGDKALLAVYDIST  233 (261)
Q Consensus       211 ~~~~~~~~~~~~d~~i~~~d~~~  233 (261)
                      .+|    ++....+.|+.||+..
T Consensus       190 ~ly----vad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         190 VLW----VTETTANRLHRIALED  208 (319)
T ss_dssp             EEE----EEEGGGTEEEEEEECT
T ss_pred             eEE----EecccCCceEEEEEcC
Confidence            743    4556678999999763

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.84  E-value=1.8e-06  Score=63.68  Aligned_cols=181  Identities=13%  Similarity=0.135  Sum_probs=114.9

Q ss_pred             eeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecC--CCCCceEEEECCCCCeEEEEec
Q 024868            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE--SEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         6 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+.++++.++   ..++++. . .        .+..+|+.++++..    ......  ....+..+.+.|+|++.++...
T Consensus        60 ~~~~i~~~~d---g~l~va~-~-~--------gl~~~d~~tg~~~~----l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~  122 (295)
T d2ghsa1          60 MGSALAKISD---SKQLIAS-D-D--------GLFLRDTATGVLTL----HAELESDLPGNRSNDGRMHPSGALWIGTMG  122 (295)
T ss_dssp             CEEEEEEEET---TEEEEEE-T-T--------EEEEEETTTCCEEE----EECSSTTCTTEEEEEEEECTTSCEEEEEEE
T ss_pred             CcEEEEEecC---CCEEEEE-e-C--------ccEEeecccceeeE----EeeeecCCCcccceeeEECCCCCEEEEecc
Confidence            4556666553   3444443 2 2        57888988776411    111111  1235788999999987665432


Q ss_pred             ----CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCCeEEEEEccCce------E--Eeec
Q 024868           84 ----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLR------I--ILDE  150 (261)
Q Consensus        84 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~------~--~~~~  150 (261)
                          .+.-.+|.+..++. ....       ......+.+.|+++++.++.+ +..+.|+.+++....      .  ....
T Consensus       123 ~~~~~~~g~l~~~~~g~~-~~~~-------~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~  194 (295)
T d2ghsa1         123 RKAETGAGSIYHVAKGKV-TKLF-------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS  194 (295)
T ss_dssp             TTCCTTCEEEEEEETTEE-EEEE-------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             ccccccceeEeeecCCcE-EEEe-------eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEecc
Confidence                23567777776643 1111       112345789999999866554 567788888874211      1  1112


Q ss_pred             cccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEe-cCCCcce
Q 024868          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS-KDGTKPF  213 (261)
Q Consensus       151 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~~  213 (261)
                      ....+....+++..+|++.++.-..+.|..||. +|+.+..+..... .+++++|- ||.+.+|
T Consensus       195 ~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~-~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         195 TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLL  256 (295)
T ss_dssp             TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEE
T ss_pred             CcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCC-ceEEEEEeCCCCCEEE
Confidence            223345789999999998887767789999995 6888888876554 48999996 6777755

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.47  E-value=2.2e-05  Score=56.78  Aligned_cols=207  Identities=10%  Similarity=0.001  Sum_probs=101.8

Q ss_pred             CceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec
Q 024868            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (261)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   83 (261)
                      .+.+...+|+|+.   ..||.....+  +......++.++..++.......................|+|+|+.|+....
T Consensus        40 ~~~~~~p~~SPDG---~~iaf~~~~~--~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          40 LGVINNARFFPDG---RKIAIRVMRG--SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             SSEEEEEEECTTS---SEEEEEEEES--TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             CCcccCEEECCCC---CEEEEEEeeC--CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            4567778899873   3444332211  1222347888888877641100000001112234567899999999887543


Q ss_pred             C------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEe-ccCC-----------eEEEEEccCce
Q 024868           84 N------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG-----------HLRIMHWPSLR  145 (261)
Q Consensus        84 d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~-----------~i~~~d~~~~~  145 (261)
                      .      ..+...+......  .     .   ....... ..+.+++..++.. ..+.           ...........
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~--~-----~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (281)
T d1k32a2         115 MQPFSSMTCLYRVENDGINF--V-----P---LNLGPAT-HILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA  183 (281)
T ss_dssp             TSSSTTCCEEEEEEGGGTEE--E-----E---CCSCSCS-EEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE
T ss_pred             cCCCccceeeeeecCCCcee--E-----E---ecCCccc-eeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc
Confidence            2      1233334333321  0     0   0111222 3455555444433 2111           12222222222


Q ss_pred             EEeeccccCCceeEEEEcCCCCEEEEecC--CCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCC
Q 024868          146 IILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (261)
Q Consensus       146 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d  223 (261)
                      .. .............++++.. +.....  ...|.++|+.+++.. .+.....  .....|+|||+.++    +.  .+
T Consensus       184 ~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~--~~~~~~SpDG~~I~----f~--~~  252 (281)
T d1k32a2         184 FK-KIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLR-KHTSFTD--YYPRHLNTDGRRIL----FS--KG  252 (281)
T ss_dssp             EE-EEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCE-ECCCCCS--SCEEEEEESSSCEE----EE--ET
T ss_pred             ee-eccCCccccceeeeecccc-ceecccccccceEEEeCCCCceE-EeecCCC--cccccCcCCCCEEE----EE--eC
Confidence            22 2222333445566666533 233323  346788888766644 3433333  23346899999831    22  35


Q ss_pred             cEEEEEECCCCeEE
Q 024868          224 ALLAVYDISTWNKI  237 (261)
Q Consensus       224 ~~i~~~d~~~~~~~  237 (261)
                      +.|+++|+.+++..
T Consensus       253 ~~l~~~d~~~g~~~  266 (281)
T d1k32a2         253 GSIYIFNPDTEKIE  266 (281)
T ss_dssp             TEEEEECTTTCCEE
T ss_pred             CEEEEEECCCCCEE
Confidence            67999999988765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.18  E-value=0.00015  Score=55.05  Aligned_cols=88  Identities=8%  Similarity=0.016  Sum_probs=61.6

Q ss_pred             CCcEEEEec-cCCeEEEEEccCceEEeeccc-cCCceeEEEEcCC--CCEEEEecCCC------------------cEEE
Q 024868          123 DGSRFAAGG-VDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSLD--SEFLATTSTDG------------------SARI  180 (261)
Q Consensus       123 ~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~d~------------------~i~i  180 (261)
                      ||+++++.. .+++|.+.|+++.+......- ....+..++..++  -.|++..+.+.                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            788888775 678899999998886442222 2335677776554  45777665522                  3667


Q ss_pred             EEccCCcEEEEEeecCCCceEEEEEecCCCcc
Q 024868          181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       181 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      +|..+.+....+....  ....+.++|+|++.
T Consensus       178 ID~~tm~V~~QV~V~g--~ld~~~~s~dGK~a  207 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSG--NLDNCDADYEGKWA  207 (459)
T ss_dssp             EETTTTEEEEEEEESS--CCCCEEECSSSSEE
T ss_pred             EecCCceEEEEeeeCC--ChhccccCCCCCEE
Confidence            8999988887776543  36788999999984

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=0.00094  Score=47.93  Aligned_cols=183  Identities=8%  Similarity=-0.083  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      .|..++.++...      ....+ ....+.+++|.+..+.|.-... .+.|+..++..........   .........+.
T Consensus        11 ~I~~~~l~~~~~------~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~---~~~~~~~~~p~   80 (266)
T d1ijqa1          11 EVRKMTLDRSEY------TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD---TVISRDIQAPD   80 (266)
T ss_dssp             SEEEEETTSCCC------EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE---EEECSSCSCCC
T ss_pred             eEEEEECCCCcc------eeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceE---EEEeCCCCCcc
Confidence            466677766543      22233 3456789999998887776553 4556666654422111000   00111234567


Q ss_pred             EEEEeeCCcEEEEe-ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEec--CCCcEEEEEccCCcEEEEEe
Q 024868          117 CLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLT  193 (261)
Q Consensus       117 ~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~  193 (261)
                      .+++.+.+..|..+ ...+.|.+.++..................++++|...+++...  ..+.|.-.++..... ..+.
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~  159 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV  159 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEE
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-eccc
Confidence            89998866655555 4567899999876554433444445688999999665555443  334566666654433 3333


Q ss_pred             ecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCe
Q 024868          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (261)
Q Consensus       194 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~  235 (261)
                      ...-..+.++++++.++.+|    .+-...+.|...|+....
T Consensus       160 ~~~~~~p~gl~iD~~~~~lY----w~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         160 TENIQWPNGITLDLLSGRLY----WVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             CSSCSCEEEEEEETTTTEEE----EEETTTTEEEEEETTSCS
T ss_pred             ccccceeeEEEeeccccEEE----EecCCcCEEEEEECCCCC
Confidence            22223478999999888743    344666789999986543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.89  E-value=0.00036  Score=52.92  Aligned_cols=152  Identities=10%  Similarity=0.095  Sum_probs=96.6

Q ss_pred             EEEECC---CCCeEEEEec-CCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEee--CCcEEEEeccC--------
Q 024868           68 TIAVNP---SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD--------  133 (261)
Q Consensus        68 ~~~~~~---~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d--------  133 (261)
                      .+++..   ||++|++... +.+|.+-|++..+...      +...+....+..++..+  +..+++..+.+        
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~k------Ii~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg  162 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDA------ILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG  162 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE------EEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeE------EEecCCCCCCceeecccCCCeEEEEccCccccccCCCC
Confidence            455543   7888887664 6789999998877522      11223334556666654  44566665442        


Q ss_pred             ----------CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCC---------------cEEEEEc-----
Q 024868          134 ----------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG---------------SARIWKT-----  183 (261)
Q Consensus       134 ----------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---------------~i~iwd~-----  183 (261)
                                +.+..+|..+.+...+... .+....+.++|+|+++++.+.+.               .+.+++.     
T Consensus       163 ~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~  241 (459)
T d1fwxa2         163 TNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  241 (459)
T ss_dssp             SSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             ccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHH
Confidence                      2366788888887666543 33567899999999998876431               1334443     


Q ss_pred             ------------------cC---CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECC
Q 024868          184 ------------------ED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (261)
Q Consensus       184 ------------------~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~  232 (261)
                                        ++   ...++.+....  ....+.++|||+++    ++++.-+.++.++|++
T Consensus       242 av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpK--sPHGV~vSPDGKyi----~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         242 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHL----CVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             HHHHTCSEEETTEEEEECSGG--CSSEEEEEEES--SCCCEEECTTSSEE----EEECTTSSBEEEEEGG
T ss_pred             hhhcCCcEEeCCceeecccccCCcceeEEEecCC--CCCceEECCCCCEE----EEeCCcCCcEEEEEeh
Confidence                              21   11222233222  26678999999984    4778889999999986

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=0.0022  Score=45.79  Aligned_cols=218  Identities=9%  Similarity=-0.008  Sum_probs=125.0

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCC
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNG   85 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg   85 (261)
                      +..++|.+.  .+.+..+-...+        .|+..+.++...      ...+......+.++++..-+..|..+. ..+
T Consensus        38 ~~~ld~D~~--~~~iywsd~~~~--------~I~~~~l~g~~~------~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~  101 (263)
T d1npea_          38 IIGLAFDCV--DKVVYWTDISEP--------SIGRASLHGGEP------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLD  101 (263)
T ss_dssp             EEEEEEETT--TTEEEEEETTTT--------EEEEEESSSCCC------EEEECTTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEEEeC--CCEEEEEECCCC--------eEEEEEcccCCc------EEEEEeccccccEEEEeccCCeEEEeccCCC
Confidence            344555543  234444434444        666666655432      223333345688999987666665444 457


Q ss_pred             cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEecc---CCeEEEEEccCceEEeeccccCCceeEEEE
Q 024868           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (261)
Q Consensus        86 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  162 (261)
                      .|.+.++....... +..      .....+..++++|...+++....   ...|.--++............-.....+++
T Consensus       102 ~I~~~~~dg~~~~~-l~~------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glai  174 (263)
T d1npea_         102 RIEVAKMDGTQRRV-LFD------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (263)
T ss_dssp             EEEEEETTSCSCEE-EEC------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EEEEEecCCceEEE-Eec------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEE
Confidence            88888887654311 110      11245789999997666655432   223444455433322222223345689999


Q ss_pred             cCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeee
Q 024868          163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (261)
Q Consensus       163 s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  241 (261)
                      .+.++.|+.+ ...+.|...|+........+. .... ..++++.  +.++|    .+-...+.|...|..+++.+....
T Consensus       175 D~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-~~~~-P~~lav~--~~~lY----wtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         175 DAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQY-PFAVTSY--GKNLY----YTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCS-EEEEEEE--TTEEE----EEETTTTEEEEEETTTTEEEEEEC
T ss_pred             eecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-CCCC-cEEEEEE--CCEEE----EEECCCCEEEEEECCCCccceEEC
Confidence            9887777655 456789888986544433333 3332 5677775  44432    455567789999999888765443


Q ss_pred             -ccCcCeeEEEEeeC
Q 024868          242 -LLRKPASVLSISLD  255 (261)
Q Consensus       242 -~~~~~v~~~~~s~d  255 (261)
                       ........+++.++
T Consensus       247 ~~~~~~~~gi~v~~~  261 (263)
T d1npea_         247 PHKQTRLYGITIALS  261 (263)
T ss_dssp             CSSCCCCCCEEEECS
T ss_pred             CCCCCCcceEEEeCC
Confidence             23345556766654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.78  E-value=0.0022  Score=51.35  Aligned_cols=80  Identities=11%  Similarity=0.089  Sum_probs=55.2

Q ss_pred             CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  213 (261)
                      |.|.-+|+.+++.+.+........... .+-.+.++++++.|+.++-+|.++|+.+.++.......-.-+.|..||++ |
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq-Y  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ-Y  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE-E
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcce-eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE-E
Confidence            578888999998877654332222111 22246677789999999999999999998887554332334667789987 4


Q ss_pred             EE
Q 024868          214 LF  215 (261)
Q Consensus       214 ~~  215 (261)
                      +.
T Consensus       522 i~  523 (571)
T d2ad6a1         522 IG  523 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.71  E-value=0.0015  Score=52.22  Aligned_cols=77  Identities=13%  Similarity=0.097  Sum_probs=53.8

Q ss_pred             CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      |.+.-+|+.+++.+.+..... +..+-.++-.+.+++.++.||.++-+|.++|+.+.++.......-.-+.+..+|++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            467888999998877654322 22222233356678889999999999999999998887654322223567789987

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.64  E-value=0.0065  Score=48.68  Aligned_cols=78  Identities=15%  Similarity=0.182  Sum_probs=56.7

Q ss_pred             CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       133 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      .|.+.-+|+.+++.+.+...+. ++..-..+..+.++++++.|+.++-+|.++|+.+.++.......-.-+.|..+|++
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            4678889999999887765433 22222234467788889999999999999999999887654332333677889987

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.61  E-value=0.0041  Score=49.76  Aligned_cols=77  Identities=9%  Similarity=0.053  Sum_probs=53.7

Q ss_pred             CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCc
Q 024868          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  211 (261)
                      |.+.-||+.+++.+.+..... +...-..+-.|.++++++.|+.++.+|.++|+.+.++.......-.-+.|..+|++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            467888998998877654332 22222233467788889999999999999999998887544321222567779987

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.53  E-value=0.013  Score=46.69  Aligned_cols=77  Identities=16%  Similarity=0.122  Sum_probs=52.0

Q ss_pred             cEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe-eEEEEeeC
Q 024868          177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLD  255 (261)
Q Consensus       177 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~s~d  255 (261)
                      .+.-||+.+|+.+.+......  ...-..+-.|..     ++.+..||.++.+|.++|+.+-.+....... .-+.+..|
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p--~~gg~lstaggl-----VF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~  530 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSP--WNGGTLTTAGNV-----VFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVD  530 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSS--CCCCEEEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             cEEEeCCCCCceEeeecCCCC--CCCceEEEcCCE-----EEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEEC
Confidence            577788889988877764432  222233446665     5678899999999999999997766543221 22567778


Q ss_pred             CC-EEe
Q 024868          256 GK-YLA  260 (261)
Q Consensus       256 g~-~la  260 (261)
                      |+ ||+
T Consensus       531 GkQYv~  536 (573)
T d1kb0a2         531 GRQYVS  536 (573)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            86 444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=0.0069  Score=43.17  Aligned_cols=202  Identities=7%  Similarity=-0.049  Sum_probs=114.8

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (261)
                      .|...+.+......... ...+..+...+.+++|.+..++|.... .++.|+..++.+... ....      ......+.
T Consensus        11 ~I~~~~ld~~~~~~~~~-~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~------~~~~~~p~   82 (263)
T d1npea_          11 KIERLPLERNTMKKTEA-KAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTII------RQDLGSPE   82 (263)
T ss_dssp             EEEEEEESSSCBCGGGC-EEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEE------CTTCCCEE
T ss_pred             eEEEEECCCcccccccc-ccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEE------Eecccccc
Confidence            56556555443322111 112333344578899998877776654 457788888766543 1111      11224678


Q ss_pred             EEEEeeCCcEEEEe-ccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecC-CCcEEEE--EccCCcEEEEE
Q 024868          117 CLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIW--KTEDGVAWTFL  192 (261)
Q Consensus       117 ~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~iw--d~~~~~~~~~~  192 (261)
                      ++++..-+..|..+ ...+.|.+.++...............+..++++|...+++.... .+..+|+  ++..... ..+
T Consensus        83 ~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i  161 (263)
T d1npea_          83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RIL  161 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEE
T ss_pred             EEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eee
Confidence            89998756555544 46678999998755432222222346889999997776664432 2333444  5543333 233


Q ss_pred             eecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEe
Q 024868          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (261)
Q Consensus       193 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  253 (261)
                      ....-....++++.+.++.+|    .+-...+.|...|+............. ...++++.
T Consensus       162 ~~~~~~~P~glaiD~~~~~lY----w~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~  217 (263)
T d1npea_         162 AQDNLGLPNGLTFDAFSSQLC----WVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY  217 (263)
T ss_dssp             ECTTCSCEEEEEEETTTTEEE----EEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE
T ss_pred             eeecccccceEEEeecCcEEE----EEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE
Confidence            222223478999999888743    344566789999997554432233322 33466654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.40  E-value=0.014  Score=46.83  Aligned_cols=79  Identities=10%  Similarity=0.119  Sum_probs=55.1

Q ss_pred             CeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcce
Q 024868          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (261)
Q Consensus       134 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  213 (261)
                      |.+.-||..+++.+.+..... +..+-.++..|.+++.++.||.++-+|.++|+.+.++.......-.-+.|..+|++ |
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ-Y  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ-Y  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE-E
T ss_pred             ceEEEEeCCCCceecccCCCC-CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE-E
Confidence            578888999998876553322 22222233457778889999999999999999999887554332333567789987 4


Q ss_pred             E
Q 024868          214 L  214 (261)
Q Consensus       214 ~  214 (261)
                      +
T Consensus       531 v  531 (596)
T d1w6sa_         531 V  531 (596)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.01  Score=42.27  Aligned_cols=175  Identities=10%  Similarity=-0.068  Sum_probs=103.0

Q ss_pred             CCCceEEEECCCCCeEEEEe-cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec--cCCeEEEE
Q 024868           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIM  139 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~  139 (261)
                      ...+..+++.+.+..|..+. ..+.|.+.++........ .      .........++++|...++....  ..+.|.-.
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~-~------~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~  148 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-F------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  148 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-E------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEE-E------cCCCCCcceEEEEcccCeEEEeccCCCcceeEe
Confidence            35577888887666665554 457789998876543111 1      11234578899999655555443  34567666


Q ss_pred             EccCceEEeeccccCCceeEEEEcCCCCEEEEe-cCCCcEEEEEccCCcEEEEEeecCC-CceEEEEEecCCCcceEEEE
Q 024868          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCT  217 (261)
Q Consensus       140 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~  217 (261)
                      ++............-.....+++.+.++.|+.+ ...+.|...|+.............. ....++++.  +.++|    
T Consensus       149 ~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly----  222 (266)
T d1ijqa1         149 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVF----  222 (266)
T ss_dssp             ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEE----
T ss_pred             ccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEE----
Confidence            665433322222233457899999977766655 5567888889875544333332221 235567665  34432    


Q ss_pred             EeeCCCcEEEEEECCCCeEEeeeeccCcCeeEE
Q 024868          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVL  250 (261)
Q Consensus       218 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~  250 (261)
                      .+-..++.|+..+..+++....+......+.++
T Consensus       223 ~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i  255 (266)
T d1ijqa1         223 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDM  255 (266)
T ss_dssp             EEETTTTEEEEEETTTCCCCEEEECSCSCCCCE
T ss_pred             EEECCCCeEEEEECCCCcceEEEEcCCCCceEE
Confidence            455567889888988877654444333333333

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.31  E-value=0.026  Score=44.89  Aligned_cols=78  Identities=15%  Similarity=0.164  Sum_probs=53.1

Q ss_pred             CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCc-CeeEEEEee
Q 024868          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISL  254 (261)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~  254 (261)
                      |.+.-||+.+++.+.+......  ..+-.+.-.+..     ++.++.||.++.||.++|+.+-.+..... .-.-+.+..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~--~~gg~l~Taggl-----VF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~  510 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH--WNGGTLSTAGNL-----VFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL  510 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS--CCCCEEEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC--CCCceeEECCCE-----EEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEE
Confidence            4678899999998887764432  333234445565     56788999999999999999977664432 122366777


Q ss_pred             CCC-EEe
Q 024868          255 DGK-YLA  260 (261)
Q Consensus       255 dg~-~la  260 (261)
                      ||+ ||+
T Consensus       511 dGkqyv~  517 (560)
T d1kv9a2         511 AGRQYVA  517 (560)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            885 554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.26  E-value=0.029  Score=44.63  Aligned_cols=78  Identities=15%  Similarity=0.072  Sum_probs=51.0

Q ss_pred             CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCc-CeeEEEEee
Q 024868          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISL  254 (261)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~  254 (261)
                      |.+.-+|+++|+.+.+......  ..+-..+-.+..     ++.++.|+.++.+|.++|+.+-+...... .-.-+.+..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~--~~~g~l~Taggl-----Vf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~  516 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKGGL-----VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF  516 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCC--CCcceeEecCCE-----EEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEE
Confidence            4577788888888777654322  222122334554     46689999999999999999977664432 223367777


Q ss_pred             CCC-EEe
Q 024868          255 DGK-YLA  260 (261)
Q Consensus       255 dg~-~la  260 (261)
                      ||+ |++
T Consensus       517 dGkqYi~  523 (571)
T d2ad6a1         517 KGKQYIG  523 (571)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            886 544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.24  E-value=0.02  Score=42.40  Aligned_cols=204  Identities=11%  Similarity=0.133  Sum_probs=112.3

Q ss_pred             cceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEEC------CCCCeEEEEecC----CcE
Q 024868           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN------PSGDDFVCSTTN----GGC   87 (261)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~d----g~i   87 (261)
                      ...+++....++        -++.||.+...+      . .++  .+.+..+..-      ....-+++++..    .+|
T Consensus        39 ~~SlI~gTdK~~--------Gl~vYdL~G~~l------~-~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l  101 (353)
T d1h6la_          39 QNSKLITTNKKS--------GLAVYSLEGKML------H-SYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI  101 (353)
T ss_dssp             GGCEEEEEETTS--------CCEEEETTCCEE------E-ECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEE
T ss_pred             CccEEEEEcCcC--------CEEEEcCCCcEE------E-ecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeE
Confidence            355666655555        478888876654      1 121  3455555543      222234555432    358


Q ss_pred             EEEEEeCCccccceeeee-CCCCCCCCCeEEEEE--eeC-Cc-EEEEeccCCeEEEEEcc---CceE---EeeccccCCc
Q 024868           88 KLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSF--SVD-GS-RFAAGGVDGHLRIMHWP---SLRI---ILDEPKAHKS  156 (261)
Q Consensus        88 ~i~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~--s~~-~~-~l~~~~~d~~i~~~d~~---~~~~---~~~~~~~~~~  156 (261)
                      .+|.+.........+... .........++.+++  +|. |. ++++...+|.+..|.+.   .+..   ..+.......
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q  181 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQ  181 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSC
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCc
Confidence            888887543211111110 011111234667776  553 54 45556678888888763   2211   1222334457


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEEccC-----CcEEEEEee-cCCCceEEEEEec--CCCcceEEEEEeeCCCcEEEE
Q 024868          157 VLDMDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTR-NSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAV  228 (261)
Q Consensus       157 v~~~~~s~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~-~~~~~v~~~~~~p--~~~~~~~~~~~~~~~d~~i~~  228 (261)
                      +..+.+.+..+.|+.+-.+..++.++..-     +..+....+ +....+..++.-.  +++- |+  +++...+++..+
T Consensus       182 ~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~G-yl--ivSsQG~n~f~v  258 (353)
T d1h6la_         182 TEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKG-YL--LASSQGNSSYAI  258 (353)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCE-EE--EEEEGGGTEEEE
T ss_pred             cceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCe-EE--EEEcCCCCeEEE
Confidence            89999999888888888777666666541     222222221 2233577777543  4453 33  577778899999


Q ss_pred             EECCCC-eEEeeee
Q 024868          229 YDISTW-NKIGHKR  241 (261)
Q Consensus       229 ~d~~~~-~~~~~~~  241 (261)
                      ||.... +.+..+.
T Consensus       259 ydr~~~~~~~g~F~  272 (353)
T d1h6la_         259 YERQGQNKYVADFQ  272 (353)
T ss_dssp             EESSTTCCEEEEEE
T ss_pred             EecCCCccccceEE
Confidence            999764 5554443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.15  E-value=0.025  Score=41.80  Aligned_cols=188  Identities=13%  Similarity=0.072  Sum_probs=103.0

Q ss_pred             CceEEEECCCCCeEEEEec------------CCcEEEEEEeCCccccceeeeeCCCCC-CCCCeEEEEE--eeCCc-EEE
Q 024868           65 DPMTIAVNPSGDDFVCSTT------------NGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSF--SVDGS-RFA  128 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~------------dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~--s~~~~-~l~  128 (261)
                      ...++...|+|..+++++.            .|.+.++|+.+.......+........ ..-....+.+  .++|+ +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            4557888899887766532            388999998766542222211111100 0112344444  33555 344


Q ss_pred             Eec---cCCeEEEEEccCceE--Eee-ccccC--CceeEEEEcCCCCEEEEecC---------------CCcEEEEEccC
Q 024868          129 AGG---VDGHLRIMHWPSLRI--ILD-EPKAH--KSVLDMDFSLDSEFLATTST---------------DGSARIWKTED  185 (261)
Q Consensus       129 ~~~---~d~~i~~~d~~~~~~--~~~-~~~~~--~~v~~~~~s~~~~~l~~~~~---------------d~~i~iwd~~~  185 (261)
                      +..   ...+|.++++.....  ... ...+.  ....++++..++.+++|-..               -+...+|..+.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            432   455788888754331  111 11111  24788999999988888321               12345555554


Q ss_pred             CcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEee--eeccCcCeeEEEEee-CCCE
Q 024868          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISL-DGKY  258 (261)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~s~-dg~~  258 (261)
                      ++...... ... ..+.++++||++++|    ++....++|+.|++.....+..  .......+-.+.+.+ +|.+
T Consensus       196 ~~~~~~~~-~l~-~pNGI~~s~d~~~ly----Va~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         196 NDVRVVAE-GFD-FANGINISPDGKYVY----IAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             SCEEEEEE-EES-SEEEEEECTTSSEEE----EEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             CceEEEcC-CCC-ccceeEECCCCCEEE----EEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence            44433233 223 488999999999853    5555677899999875432211  122334455677765 4443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.013  Score=43.87  Aligned_cols=142  Identities=8%  Similarity=-0.004  Sum_probs=81.8

Q ss_pred             CCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccccee--eeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEc
Q 024868           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL--AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (261)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~  141 (261)
                      ....-+++++...++++|+.++ ++|.....-+......  ............|..++|+-|  .+++. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            3466788888777788877776 7777754321100000  000000001235888899744  45554 5566888877


Q ss_pred             cCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEEEEee----cCCCceEEEEEecCCCc
Q 024868          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR----NSDEKIELCRFSKDGTK  211 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~  211 (261)
                      ..-...........++..+.++|.  .++....++.+.++++.+++......+    .....+.+++|++.|++
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE
Confidence            654333333333456788888775  455556689999999988764332210    01124777888877776

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.10  E-value=0.035  Score=42.46  Aligned_cols=234  Identities=11%  Similarity=-0.064  Sum_probs=111.9

Q ss_pred             eeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC--
Q 024868            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--   84 (261)
Q Consensus         7 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--   84 (261)
                      .....|.++|+...++.+-+.+|    .....++.+|..+++...     ..+..  .....++|.+|++.|+....+  
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G----~e~~~l~v~Dl~tg~~~~-----~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~  193 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASG----SDWVTIKFMKVDGAKELP-----DVLER--VKFSCMAWTHDGKGMFYNAYPQQ  193 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETT----CSCEEEEEEETTTTEEEE-----EEEEE--ECSCCEEECTTSSEEEEEECCCC
T ss_pred             ceecceEecCCCCEEEEEecccc----CchheeEEeccCcceecc-----ccccc--ccccceEEcCCCCEEEEEEeccc
Confidence            33344556664444333322211    223489999999987521     11211  123568999999988765432  


Q ss_pred             --------------CcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec---cCCe--EEEEEccCce
Q 024868           85 --------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---VDGH--LRIMHWPSLR  145 (261)
Q Consensus        85 --------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~--i~~~d~~~~~  145 (261)
                                    ..+..+.+.+.......+..   .......+..+..++++++++...   .+..  +.+.|+....
T Consensus       194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~---e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~  270 (430)
T d1qfma1         194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE---FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES  270 (430)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC---CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             cCcccccccccCCcceEEEEECCCCccccccccc---cccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcc
Confidence                          24666666555432222211   111223456677888999876532   2333  4445544321


Q ss_pred             E--------EeeccccCCceeEEEEcCCCCEEEEecC---CCcEEEEEccCCcE--EEEEeecCCCceEEEEEecCCCcc
Q 024868          146 I--------ILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKP  212 (261)
Q Consensus       146 ~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~  212 (261)
                      .        ............- .-+.++.+++....   ++.|...++.....  ...+-.+....+..-.+...+.++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~l  349 (430)
T d1qfma1         271 NGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (430)
T ss_dssp             SSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             cccccccceeEeecccccceEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEE
Confidence            1        0111111112222 22333344443332   35666667664322  223333333234444455555552


Q ss_pred             eEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCeeEEEEeeCCC
Q 024868          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK  257 (261)
Q Consensus       213 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~dg~  257 (261)
                      ++  ...-..-..|++++..+++.........+.+..+...++..
T Consensus       350 vl--~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~  392 (430)
T d1qfma1         350 VL--CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT  392 (430)
T ss_dssp             EE--EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred             EE--EEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence            21  22233445799999988776543333334454444444443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.10  E-value=0.031  Score=41.75  Aligned_cols=162  Identities=12%  Similarity=0.048  Sum_probs=94.8

Q ss_pred             cceEEEEecCCCCC--CC-CCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecC-CcEEEEEEe
Q 024868           18 NVNLVVLGKSSRAS--SS-PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVY   93 (261)
Q Consensus        18 ~~~~~~~g~~~~~~--~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~   93 (261)
                      +..+++.|+.....  +. ...-.+..||+.+..+...+  . ....|.......++.++++.++.|+.+ ..+.+||..
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~-~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--V-TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--E-EECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--C-CCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            35677777754321  12 22235778999988763221  1 122333445567889999998888665 679999988


Q ss_pred             CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC------CeEEEEEccCceEEeecc--------ccC-----
Q 024868           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEP--------KAH-----  154 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~--------~~~-----  154 (261)
                      +..-.      ....+.....-...+..+||+.++.++.+      ..+.+||..+.+-.....        ...     
T Consensus       107 ~~~w~------~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         107 SDSWI------PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             GTEEE------ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             cCccc------ccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            76531      12222222333456777899999988743      358999987765321100        000     


Q ss_pred             -CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcE
Q 024868          155 -KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (261)
Q Consensus       155 -~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~  188 (261)
                       ..-..+...++|+.+..+..++.+.++|..+...
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence             0011122345677777777777777777776554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.03  E-value=0.006  Score=48.90  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=54.6

Q ss_pred             CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcC-eeEEEEee
Q 024868          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISL  254 (261)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~  254 (261)
                      |.+.-+|+.+|+.+.+...+..  +.+-..+..|..     ++.++.||.++.+|.++|+.+-.+...... -.-+.+..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p--~~~g~lstaggl-----VF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~  538 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP--LWAGVLATAGNL-----VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC--CCSCCEEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCC--CccceeEEcCCe-----EEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEE
Confidence            5678889999998887765432  333334556665     567889999999999999999776644322 22367788


Q ss_pred             CCC-EEe
Q 024868          255 DGK-YLA  260 (261)
Q Consensus       255 dg~-~la  260 (261)
                      ||+ |+|
T Consensus       539 ~G~qYv~  545 (582)
T d1flga_         539 DGEQYLG  545 (582)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            885 554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.95  E-value=0.043  Score=40.91  Aligned_cols=163  Identities=10%  Similarity=0.016  Sum_probs=94.0

Q ss_pred             CceEEEECCCCCeEEEEecC-----C------cEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccC
Q 024868           65 DPMTIAVNPSGDDFVCSTTN-----G------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d-----g------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (261)
                      .+.......+|+.++.|+.+     +      .+.+||..++.-......    ...+.......++.+++++++.|+.+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~----~~~~~~~~~~~~~~~~g~i~v~Gg~~   96 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT----VTKHDMFCPGISMDGNGQIVVTGGND   96 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE----ECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC----CCCcccceeEEEEecCCcEEEeecCC
Confidence            44455556688888887742     1      367898887653211110    11122233456788999999988754


Q ss_pred             -CeEEEEEccCceEEeecccc-CCceeEEEEcCCCCEEEEecCC------CcEEEEEccCCcEEEEEeecCC--------
Q 024868          134 -GHLRIMHWPSLRIILDEPKA-HKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSD--------  197 (261)
Q Consensus       134 -~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~--------  197 (261)
                       ..+.+||..+..-...-... ...-...+..+||++++.++.+      ..+.+||..+.+-...-.....        
T Consensus        97 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~  176 (387)
T d1k3ia3          97 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ  176 (387)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred             CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccc
Confidence             57999998876643221111 1234567778899999988753      3689999987764321110000        


Q ss_pred             C-----ceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          198 E-----KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       198 ~-----~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      .     .-..+...++|+.     ...++..+.+.++|..+...
T Consensus       177 ~~~~~~~~~~~~~~~~G~~-----~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         177 GLYRSDNHAWLFGWKKGSV-----FQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             GGGTTTCSCCEEECGGGCE-----EECCSSSEEEEEECSTTCEE
T ss_pred             ceeeccceeEEEEeCCCCE-----EEecCcCCcEEecCcccCcE
Confidence            0     0011222345554     35566677788888776543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.84  E-value=0.079  Score=42.32  Aligned_cols=78  Identities=12%  Similarity=0.033  Sum_probs=51.7

Q ss_pred             CcEEEEEccCCcEEEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCc-CeeEEEEee
Q 024868          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISL  254 (261)
Q Consensus       176 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~  254 (261)
                      |.+.-||+.+++.+.......  +..+-.++-.|..     ++.+..||.++.||.++|+.+-.+..... .-.-+.+..
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~--~~~gg~lsTaggl-----VF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~  525 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDL-----VFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTH  525 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTE-----EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCC--CCccceeEecCCE-----EEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEE
Confidence            457788888888776654332  2333334455665     46789999999999999999977664432 223366777


Q ss_pred             CCC-EEe
Q 024868          255 DGK-YLA  260 (261)
Q Consensus       255 dg~-~la  260 (261)
                      ||+ |||
T Consensus       526 dGkQYva  532 (596)
T d1w6sa_         526 KGTQYVA  532 (596)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            886 454

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.61  E-value=0.066  Score=38.37  Aligned_cols=124  Identities=10%  Similarity=0.038  Sum_probs=72.1

Q ss_pred             EeeecCCCCCceEEEECCCC---CeEEEEec---CCcEEEEEEeCCccc-cceeee----eCCCCCCCCCeEEEEEeeCC
Q 024868           56 TYVFDESEGDPMTIAVNPSG---DDFVCSTT---NGGCKLFEVYGGATD-INLLAK----KMPPLQDAGPQKCLSFSVDG  124 (261)
Q Consensus        56 ~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~i~~~~~~~~~-~~~~~~----~~~~~~~~~~v~~~~~s~~~  124 (261)
                      .+.+.+|......+.+.-+.   +.++.+..   .+++.+.++...... .....+    ........+-..++..|+.-
T Consensus       188 sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky  267 (327)
T d1utca2         188 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH  267 (327)
T ss_dssp             EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT
T ss_pred             CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccC
Confidence            55677886665555543221   23333322   268889988764321 111111    11111123455678888877


Q ss_pred             cEEEEeccCCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEecCCCcEE
Q 024868          125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR  179 (261)
Q Consensus       125 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~  179 (261)
                      ..+..-+.-|.+++||+.++..+..-.-..+.|..-+-+.+..-++....+|+|.
T Consensus       268 giiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         268 DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            7788888999999999999998765554455666555554444455555666544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.34  E-value=0.1  Score=37.42  Aligned_cols=193  Identities=9%  Similarity=0.038  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEE
Q 024868           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC  117 (261)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~  117 (261)
                      .+..||.+++..    +..+.+.   .+|.--.|-.+. .|+.. .+..|+-|++++...+.+...... .+ ....|..
T Consensus        84 ~LQiFnletK~k----lks~~~~---e~VvfWkWis~~-~L~lV-T~taVYHW~~~g~s~P~k~fdR~~-~L-~~~QIIn  152 (327)
T d1utca2          84 TLQIFNIEMKSK----MKAHTMT---DDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHS-SL-AGCQIIN  152 (327)
T ss_dssp             EEEEEETTTTEE----EEEEECS---SCCCEEEESSSS-EEEEE-CSSEEEEEESSSSCCCEEEEECCG-GG-TTCEEEE
T ss_pred             eEEEEehhHhhh----hceEEcC---CCcEEEEecCCC-EEEEE-cCCceEEEcccCCCCchhhhhhcc-cc-cCceEEE
Confidence            577788877663    2233333   467777786554 34443 345699999976555555444332 22 2467778


Q ss_pred             EEEeeCCcEEEEec-------cCCeEEEEEccCceEEeeccccCCceeEEEEcCC--C-CEEEEe---cCCCcEEEEEcc
Q 024868          118 LSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD--S-EFLATT---STDGSARIWKTE  184 (261)
Q Consensus       118 ~~~s~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~--~-~~l~~~---~~d~~i~iwd~~  184 (261)
                      ...+++.++++..+       -.|.+.+|..+.+.. +.+.+|-.....+.+.-+  . +.++.+   ...+.++|.++.
T Consensus       153 Y~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig  231 (327)
T d1utca2         153 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG  231 (327)
T ss_dssp             EEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECS
T ss_pred             EEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcC
Confidence            88888999877654       236788998876543 334444333333333211  1 233332   233678888876


Q ss_pred             CCc---E-----EEEEeecC---CCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCCeEEeeeeccCcCe
Q 024868          185 DGV---A-----WTFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA  247 (261)
Q Consensus       185 ~~~---~-----~~~~~~~~---~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  247 (261)
                      ...   .     ...+....   +.-.-++..|+.-..+     ..-..-|.+++||++++.++..-......|
T Consensus       232 ~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygii-----yviTK~G~i~lyDleTgt~i~~nRIs~~~i  300 (327)
T d1utca2         232 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV-----FLITKYGYIHLYDLETGTCIYMNRISGETI  300 (327)
T ss_dssp             CCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEE-----EEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEE-----EEEecCcEEEEEEcccccEEEEeecCCCce
Confidence            421   1     11111111   1124466677665542     334467899999999999875544444443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.95  E-value=0.23  Score=38.03  Aligned_cols=53  Identities=15%  Similarity=0.245  Sum_probs=38.2

Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE--eecc------ccCCceeEEEEcCC
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDEP------KAHKSVLDMDFSLD  165 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~------~~~~~v~~~~~s~~  165 (261)
                      ....+|+|.|||+++++--..|.|++++..+++..  ..+.      ..+.....++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45689999999998888755799999987766432  2111      12346789999995

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.27  E-value=0.35  Score=35.53  Aligned_cols=158  Identities=9%  Similarity=0.127  Sum_probs=87.0

Q ss_pred             CceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEE--CCC-CC-eEEEEecCCcEEEEEEeCCccccceeeeeCCCCC
Q 024868           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV--NPS-GD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (261)
Q Consensus        35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  110 (261)
                      +.+.+|.++.....+................++.+++  ++. |. ++++...+|.+..|.+....... ........+.
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~-v~~~lvr~f~  177 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY-ISGKKVRAFK  177 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS-EEEEEEEEEE
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc-eeeEeeeccC
Confidence            3456777776655431110000001111234777777  664 54 34566678999999885433211 1111122333


Q ss_pred             CCCCeEEEEEeeCCcEEEEeccCCeEEEEEccC-----ceEEeeccc--cCCceeEEEEc--CCCC-EEE-EecCCCcEE
Q 024868          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-----LRIILDEPK--AHKSVLDMDFS--LDSE-FLA-TTSTDGSAR  179 (261)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~--~~~~v~~~~~s--~~~~-~l~-~~~~d~~i~  179 (261)
                      ....+..|.+......|+.+-.+.-++.++...     +..+.....  ....+..++.-  +++. +|+ +.-.+++..
T Consensus       178 ~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            456789999999888888887776676666542     122222222  12357777753  2333 444 444578899


Q ss_pred             EEEccC-CcEEEEEe
Q 024868          180 IWKTED-GVAWTFLT  193 (261)
Q Consensus       180 iwd~~~-~~~~~~~~  193 (261)
                      +||..+ .+.+..+.
T Consensus       258 vydr~~~~~~~g~F~  272 (353)
T d1h6la_         258 IYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEESSTTCCEEEEEE
T ss_pred             EEecCCCccccceEE
Confidence            999876 35665554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.41  Score=33.61  Aligned_cols=106  Identities=15%  Similarity=0.052  Sum_probs=52.4

Q ss_pred             CCcEEEEeccC-----CeEEEEEccCceEEeeccccCC-ceeEEEEcCCCCEEEEecCC-----CcEEEEEccCCcEEEE
Q 024868          123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTF  191 (261)
Q Consensus       123 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~  191 (261)
                      +++.++.|+.+     ..+..||..+.+.......... ...+... .++++++.++.+     .....+|..+.+....
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecc
Confidence            45666666543     3578888876654322211111 1223323 245666666544     3567888776654432


Q ss_pred             EeecCCCceEEEEEecCCCcceEEEEEeeCCC-----cEEEEEECCCCe
Q 024868          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWN  235 (261)
Q Consensus       192 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~  235 (261)
                      -.......-.+++ ..+++. |    +.|+.+     ..+.+||+.+.+
T Consensus       227 ~~~p~~r~~~~~~-~~~~~l-~----v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         227 APMKHRRSALGIT-VHQGRI-Y----VLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCCSSCCBSCEEE-EETTEE-E----EECCBCSSCBCCEEEEEETTTTE
T ss_pred             cCccCcccceEEE-EECCEE-E----EEecCCCCeecceEEEEECCCCE
Confidence            2211111111232 335654 2    334432     358899998754

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.23  E-value=0.34  Score=37.05  Aligned_cols=61  Identities=10%  Similarity=0.132  Sum_probs=38.2

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCcccccee-eeeCCCCCCCCCeEEEEEeeC
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL-AKKMPPLQDAGPQKCLSFSVD  123 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~  123 (261)
                      -....+++|.|||+.|++--..|+|++++..++....... ...............++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3568899999999887765447889888766654311110 000111223456789999995

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.92  E-value=1.3  Score=32.89  Aligned_cols=104  Identities=12%  Similarity=0.079  Sum_probs=57.1

Q ss_pred             CCCceEEEECCCCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEE-EEc
Q 024868           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI-MHW  141 (261)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~-~d~  141 (261)
                      ..++..+.++|.  .++....++.+.++++....... .. .......-.+.+.++.|++.|+.++++..+. ..+ -++
T Consensus       125 ~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i  199 (381)
T d1xipa_         125 EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LA-QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEF  199 (381)
T ss_dssp             SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EE-ESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEE
T ss_pred             cccccceecCCc--eeEEEecCCCEEEEEeccCcccc-cc-CCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCC
Confidence            345777877775  45666678889999987765311 10 0011111235678888888887777763222 221 122


Q ss_pred             cCceEEeeccccCCceeEEEEcCCCCEEEE
Q 024868          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLAT  171 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  171 (261)
                      .....+......+..+.++.|-.+..++++
T Consensus       200 ~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         200 SLPSELEELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             CCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCccccCCCcCCCcceeEEEEecCceEEEE
Confidence            211111111122346889999877776654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=1.6  Score=30.29  Aligned_cols=153  Identities=14%  Similarity=0.102  Sum_probs=69.7

Q ss_pred             ceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCCCeEEEEec---------CCcEEE
Q 024868           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---------NGGCKL   89 (261)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i   89 (261)
                      +.+.+.||.+..  .-+  .+..||+.+.++...+    .++.....-..+.+  +++.++.|+.         -..+.+
T Consensus         5 ~~iyv~GG~~~~--~~~--~~~~yd~~t~~W~~~~----~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~   74 (288)
T d1zgka1           5 RLIYTAGGYFRQ--SLS--YLEAYNPSNGTWLRLA----DLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDC   74 (288)
T ss_dssp             CCEEEECCBSSS--BCC--CEEEEETTTTEEEECC----CCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEE
T ss_pred             CEEEEECCcCCC--CCc--eEEEEECCCCeEEECC----CCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhh
Confidence            445567776542  222  4667899888763321    12222112222222  4556666552         135666


Q ss_pred             EEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCe-----EEEEEccCceEEeeccccCCc-eeEEEEc
Q 024868           90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH-----LRIMHWPSLRIILDEPKAHKS-VLDMDFS  163 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~~-v~~~~~s  163 (261)
                      ||..+...  ..    ...+... .-...+...+++.++.++.++.     ...+|..+..-.......... -......
T Consensus        75 yd~~~~~w--~~----~~~~p~~-r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  147 (288)
T d1zgka1          75 YNPMTNQW--SP----CAPMSVP-RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  147 (288)
T ss_dssp             EETTTTEE--EE----CCCCSSC-CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             cccccccc--cc----cccccce-ecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee
Confidence            77655432  11    1111111 1111122336777777654433     445666555432221111111 1122222


Q ss_pred             CCCCEEEEecCC-----CcEEEEEccCCcEE
Q 024868          164 LDSEFLATTSTD-----GSARIWKTEDGVAW  189 (261)
Q Consensus       164 ~~~~~l~~~~~d-----~~i~iwd~~~~~~~  189 (261)
                       ++..++.++.+     ..+..||..+++..
T Consensus       148 -~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~  177 (288)
T d1zgka1         148 -NRLLYAVGGFDGTNRLNSAECYYPERNEWR  177 (288)
T ss_dssp             -TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             -eecceEecCcccccccceEEEeeccccccc
Confidence             45555665543     35788888766543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.23  E-value=3.3  Score=30.96  Aligned_cols=170  Identities=11%  Similarity=-0.007  Sum_probs=82.7

Q ss_pred             CceEEEECCCCCeEEEEec---CCcEEEEEEe--CCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec---cCCeE
Q 024868           65 DPMTIAVNPSGDDFVCSTT---NGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---VDGHL  136 (261)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~---dg~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i  136 (261)
                      .+..+..++++++++....   +....+|-+.  ..........................-+.++.+++...   .++.|
T Consensus       234 ~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L  313 (430)
T d1qfma1         234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRL  313 (430)
T ss_dssp             CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEE
T ss_pred             eEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCccccccee
Confidence            4567778999998764432   3344455443  32211000000000011111112222223344444433   24567


Q ss_pred             EEEEccCceE--Eeecc-ccCCceeEEEEcCCCCEEEEe-cCCC--cEEEEEccCCcEEEEEeecCCCceEEEEEecCCC
Q 024868          137 RIMHWPSLRI--ILDEP-KAHKSVLDMDFSLDSEFLATT-STDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (261)
Q Consensus       137 ~~~d~~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~  210 (261)
                      ...++.....  ...+. .+...+..-.++..+.+|+.. -.++  .|+++++.+++......... +.+..+...++..
T Consensus       314 ~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~-~sv~~~~~~~~~~  392 (430)
T d1qfma1         314 INIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDT  392 (430)
T ss_dssp             EEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCS
T ss_pred             EEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCC-ceEeeccCCCCCC
Confidence            6677664332  11222 233344443444445555544 3443  58899998887655544333 3466565556665


Q ss_pred             cceEEEEEeeCCCcEEEEEECCCCeE
Q 024868          211 KPFLFCTVQRGDKALLAVYDISTWNK  236 (261)
Q Consensus       211 ~~~~~~~~~~~~d~~i~~~d~~~~~~  236 (261)
                      .++ +...+--.-.+++-||+.+++.
T Consensus       393 ~~~-~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         393 EIF-YQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEE-EEEECSSCCCEEEEEETTSSSC
T ss_pred             EEE-EEEcCCCCCCeEEEEECCCCCc
Confidence            533 2223334567899999998753

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=86.99  E-value=4.6  Score=29.96  Aligned_cols=158  Identities=10%  Similarity=0.049  Sum_probs=73.4

Q ss_pred             CCCceeeEEEEEeeCCcceEEEEecCCCCCCCCCceEEEEEcCCCCceecCCeEEeeecCCCCCceEEEECCCC-CeEEE
Q 024868            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVC   80 (261)
Q Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~   80 (261)
                      -+++.|.+++++|..  .+.+.+|...+        -+|.-+.....+................+.+|+++|.. +.+..
T Consensus         9 ~~gg~~~~i~~~P~~--~~~~ya~~~~g--------Gv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~   78 (427)
T d2ebsa1           9 GGGGYITGIVAHPKT--KDLLYARTDIG--------GAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYL   78 (427)
T ss_dssp             CBCSCEEEEEECSSS--TTCEEEEESSS--------CEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEE
T ss_pred             CCCCcEEEEEECCCC--CCEEEEEecCC--------CEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEE
Confidence            357899999999874  34444444444        35544433333311000000011123457899999854 34444


Q ss_pred             EecC----CcEEEEEEeCCccccceeeeeCCC---CCCCCCeEEEEEeeC-CcEEEEeccCCeEEEEEccCceEEeecc-
Q 024868           81 STTN----GGCKLFEVYGGATDINLLAKKMPP---LQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP-  151 (261)
Q Consensus        81 ~~~d----g~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~-  151 (261)
                      +..+    ....+|.-.++.............   .........+.++|. ...+.++..++-|.. ....++.-.... 
T Consensus        79 ~tg~~~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~  157 (427)
T d2ebsa1          79 AQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTS  157 (427)
T ss_dssp             EECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTT
T ss_pred             EeccccCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeeccc
Confidence            3321    123466555444322222111110   011233456888984 456666655554432 223333211111 


Q ss_pred             -----ccCCceeEEEEcCC-CCEEE
Q 024868          152 -----KAHKSVLDMDFSLD-SEFLA  170 (261)
Q Consensus       152 -----~~~~~v~~~~~s~~-~~~l~  170 (261)
                           .....+..+.++|. ...++
T Consensus       158 ~~~~~~~~~~~~~i~~~p~~~~~~y  182 (427)
T d2ebsa1         158 IPDAFTNGIGYTSVIFDPERNGTIY  182 (427)
T ss_dssp             SSCCCCSSSCEEEEEECTTSTTCEE
T ss_pred             CcccccCCccceEEEecccccceee
Confidence                 11124778889884 33343

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.64  E-value=3.7  Score=27.65  Aligned_cols=104  Identities=13%  Similarity=0.085  Sum_probs=54.2

Q ss_pred             CCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCC--cEEEEe-c-----cCCeEEEEEccCceE
Q 024868           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAG-G-----VDGHLRIMHWPSLRI  146 (261)
Q Consensus        75 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~-~-----~d~~i~~~d~~~~~~  146 (261)
                      .+.++++...|.+.++-+..++. .++.         +.+|... ..|..  .++..+ .     .-..+++-++.....
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~-vkLt---------kePI~~~-~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE   94 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGET-VKLN---------REPINSV-LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE   94 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSC-EECC---------SSCCSEE-CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             CcEEEEEeccceEEEEEEeCCEE-EEEe---------cccccCc-CCCccCcceEEEEeehhcCcceeeEEEEccCCCCe
Confidence            34677777899999999887764 1111         1222221 12221  122222 1     222355555543222


Q ss_pred             EeeccccC-CceeEEEEcCCCCEEEEecCCCcEEEEEccCCcEEE
Q 024868          147 ILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (261)
Q Consensus       147 ~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~  190 (261)
                      ..++.... -.|.+++.. |.+...+|+......+|-++.|+..+
T Consensus        95 E~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrk  138 (313)
T d2hu7a1          95 EQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRE  138 (313)
T ss_dssp             EEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEE
T ss_pred             eeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceee
Confidence            23333222 235555443 44566678777888999888887644

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.41  E-value=5.6  Score=28.68  Aligned_cols=143  Identities=6%  Similarity=0.021  Sum_probs=78.6

Q ss_pred             ceEEEE--CCCCC-eEEEEe---cCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEec---c----
Q 024868           66 PMTIAV--NPSGD-DFVCST---TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---V----  132 (261)
Q Consensus        66 v~~~~~--~~~~~-~l~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~----  132 (261)
                      ...++.  .++|. +|++..   ...+|-+|++.............  ........+++.+..++.++++-.   .    
T Consensus        99 PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v--~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~  176 (340)
T d1v04a_          99 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI--RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  176 (340)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE--CCTTCSSEEEEEEEETTEEEEEESCSCCSHHH
T ss_pred             ccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeec--CCccccCccceEEecCCCEEEecCccCcChhh
Confidence            345554  45665 344443   34678889887654322211111  111234578999999998888731   0    


Q ss_pred             --------CCeEEEEEccCceEEeeccccCCceeEEEEcCCCCEEEEe-cCCCcEEEEEccCCcEEEE-EeecCCCceEE
Q 024868          133 --------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTF-LTRNSDEKIEL  202 (261)
Q Consensus       133 --------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~  202 (261)
                              -+...+|....++.. .....-.....++++||+++|+.+ +..+.|++|++...+.+.. ........+-.
T Consensus       177 ~~~e~~~~~~~g~v~~~~~~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDN  255 (340)
T d1v04a_         177 KSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDN  255 (340)
T ss_dssp             HHHHHHTTCCCEEEEEECSSCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEE
T ss_pred             hhhhHhhcCCceeEEEEcCCceE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCc
Confidence                    122334443333332 222233457899999999877654 4578899999875432221 11123334667


Q ss_pred             EEEecCCCc
Q 024868          203 CRFSKDGTK  211 (261)
Q Consensus       203 ~~~~p~~~~  211 (261)
                      +.+.+++..
T Consensus       256 i~~d~~~g~  264 (340)
T d1v04a_         256 ISVDPVTGD  264 (340)
T ss_dssp             EEECTTTCC
T ss_pred             cEEecCCCE
Confidence            777764433

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.31  E-value=6.1  Score=28.26  Aligned_cols=111  Identities=12%  Similarity=0.018  Sum_probs=67.8

Q ss_pred             CCCeEEEEecCCcEEEEEEeCCccccceeeeeCCCCCCCCCeEEEEEeeCCcEEEEeccCCeEEEEEccCceE-------
Q 024868           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-------  146 (261)
Q Consensus        74 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-------  146 (261)
                      +..+|+..+..|.++...+.........-......+.....+..+....+...++.++..|.+..++...-..       
T Consensus       105 ~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~G  184 (323)
T d1wp5a_         105 LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG  184 (323)
T ss_dssp             SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC
T ss_pred             cceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEEEecceeeEeecccccccCccccc
Confidence            4567888899999999988654321110011123344556777777777777888888999998888653211       


Q ss_pred             Eeec-cccCCceeE-EEEcCCCCEEEEecCCCcEEEEEcc
Q 024868          147 ILDE-PKAHKSVLD-MDFSLDSEFLATTSTDGSARIWKTE  184 (261)
Q Consensus       147 ~~~~-~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~iwd~~  184 (261)
                      +..+ ......+-+ ....+++..++..+..|..+.-.+.
T Consensus       185 V~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~  224 (323)
T d1wp5a_         185 VKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT  224 (323)
T ss_dssp             EECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred             ccccccccccccchhhhccccccceeeeeeeheeecccch
Confidence            1111 112234443 3445566778888888887776654

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=80.22  E-value=5.9  Score=26.04  Aligned_cols=133  Identities=13%  Similarity=0.027  Sum_probs=72.0

Q ss_pred             CCeEEEEEeeCCcEEEEeccCCeEEEEEccCceEE-----eeccccC--CceeEEEEcCCCCEEEEecCCCcEEEEEcc-
Q 024868          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----LDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTE-  184 (261)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~iwd~~-  184 (261)
                      ..+.-+.|||+|++.++-  .+.++.=.+.+....     .+..+..  ....-+-|+|.|-+.++.  ++  .+|.-. 
T Consensus        40 ~n~~~i~fsP~G~LyaVr--~~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt--~~--~LYr~~p  113 (235)
T d1tl2a_          40 SNFKFLFLSPGGELYGVL--NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--KD--KLYKASP  113 (235)
T ss_dssp             TTCSEEEECTTSCEEEEE--TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             cceeEEEECCCCcEEEEE--CCeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec--Cc--ceecCCc
Confidence            456779999999988875  334554333322110     0011111  246678899999766665  34  455432 


Q ss_pred             -CCcE------EEEEeecCCCceEEEEEecCCCcceEEEEEeeCCCcEEEEEECCCC---------eEEeeeeccCcCee
Q 024868          185 -DGVA------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---------NKIGHKRLLRKPAS  248 (261)
Q Consensus       185 -~~~~------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~v~  248 (261)
                       +.++      ...+-...-..+..+-|.|+|..      .....+ .++-+.-..+         +.+.  ..+-....
T Consensus       114 Ptn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~L------YaV~~~-~l~k~~pP~~~~d~WL~~st~ig--r~~w~~~~  184 (235)
T d1tl2a_         114 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL------YAVHGQ-QFYKALPPVSNQDNWLARATKIG--QGGWDTFK  184 (235)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE------EEEETT-EEEEECCCSSTTCCHHHHCEEEE--SSSGGGEE
T ss_pred             CcccchhhhhhhhhhccCCcCceeEEEECCCceE------EEEECC-cEEEcCCCCCCCchhhhhhhhhc--cCcccCce
Confidence             1111      11111111124778899999985      222233 4666664432         2221  23334567


Q ss_pred             EEEEeeCCCEEe
Q 024868          249 VLSISLDGKYLA  260 (261)
Q Consensus       249 ~~~~s~dg~~la  260 (261)
                      -+.|+|||..-+
T Consensus       185 fi~Fs~dG~L~~  196 (235)
T d1tl2a_         185 FLFFSSVGTLFG  196 (235)
T ss_dssp             EEEECTTSCEEE
T ss_pred             EEEECCCCcEEE
Confidence            899999998654