Citrus Sinensis ID: 024881

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEPLLQL
Secondary Structure (PSIPRED)
cHHHHHHHHHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEEcccccEEccccEEEEccccEEEEEEcccccEEEEEEccccccccccccEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHccccccccccccccccccccEcccccccccccHHcccccccccccccccccccccccccccccccEEEEccccEEEEEEEcccccccccccEEEEccccEEEEEEEccccEEEHEEccHHHHHcccccEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAAAAATYHhlslssisqnpisksetqhfssprhsvsifkpifissslhkstnvvpikthdrrrftcsnslssipantsqyefsdgsAEIELRLQLGsleiqsskdifvdadgtcltvrvnrsgSFITLIETnqlfdkikptetiwyidedQLVINLkkqdpelkwpdiVESWESLTAGSMQLLKGTSIflvgdsteVNEKVALELAVglgytplsTKELLETFAKQTIDSwmlaegsdsvvngeCDVLEslimfepllql
Flexible Loop (DISEMBL)
MAAAAatyhhlslssisqnpISKSETQHFSSPRHSVSIFKPIfissslhkstnvvpikthdrrrftcsnslssipantsQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRsgsfitlietnqlfdkiKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLImfepllql
Low Complexity Region (SEG)
MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEPLLQL
Disordered region (IsUnstruct)
************************************SIFKPIFISSSLHKSTNVVPIKTHDRRRFTC*********************EIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP****
Disordered Region (DISOPRED)
********HHLSLSSISQN************************************************************QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEPLLQL
Disordered Region (DISEMBL)
************LSSISQN**************HSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEPLLQL
Disordered Region (DISPRO)
****AA*YHHLSLSSISQNPISKS***HFSSPRHSVSIFKPIFISSS*******V*IK*HDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEPLLQL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEPLLQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
O82290	387	Probable inactive shikima	yes	no	0.900	0.607	0.579	4e-69

>sp|O82290|SKL2_ARATH Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana GN=SKL2 PE=2 SV=2

 Score =  261 bits (667), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 142/245 (57%), Positives = 177/245 (72%), Gaps = 10/245 (4%)

Query: 3   AAAATYHHLSLSSISQNPISKSET-----QHFSSPRHSVSIFKPIFISSSLHKSTNVVPI 57
           AA A+   +  +S S NP++   T     +  SSPR   S F  +        S NV+P 
Sbjct: 2   AAFASGLAIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIPD 60

Query: 58  KTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLT 117
           + +    F+C N LS++  +T  YEF+DG  E+ELRL+L + EI S KDI VDADGT L 
Sbjct: 61  RFNS---FSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLA 116

Query: 118 VRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLT 177
           V+  R+G  ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESLT
Sbjct: 117 VKEKRNGLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLT 176

Query: 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEG 237
           AG MQLLKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAEG
Sbjct: 177 AGMMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEG 236

Query: 238 SDSVV 242
            DSV 
Sbjct: 237 PDSVA 241

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
255555887	382	ATP binding protein, putative [Ricinus c	0.808	0.552	0.680	3e-78
224071393	384	shikimate kinase-like protein [Populus t	0.865	0.588	0.661	2e-77
449465896	384	PREDICTED: uncharacterized protein LOC10	0.800	0.544	0.693	1e-76
225427143	371	PREDICTED: uncharacterized protein LOC10	0.869	0.611	0.609	9e-76
388490874	376	unknown [Lotus japonicus]	0.708	0.492	0.698	3e-71
356497645	369	PREDICTED: uncharacterized protein LOC10	0.747	0.528	0.673	9e-71
357485087	377	Shikimate kinase-like protein [Medicago	0.708	0.490	0.698	4e-70
388504258	377	unknown [Medicago truncatula]	0.708	0.490	0.693	1e-69
217072810	240	unknown [Medicago truncatula]	0.704	0.766	0.686	7e-69
147767344	1576	hypothetical protein VITISV_017889 [Viti	0.789	0.130	0.613	4e-68

>gi|255555887|ref|XP_002518979.1| ATP binding protein, putative [Ricinus communis] gi|223541966|gb|EEF43512.1| ATP binding protein, putative [Ricinus communis]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/222 (68%), Positives = 176/222 (79%), Gaps = 11/222 (4%)

Query: 38  IFKPIFISSSLH-------KSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEI 90
           I KP+F S S         KS NV   K ++R   +C ++ ++    ++ YEFSDGS+E+
Sbjct: 32  ISKPVFTSISKFCLPISSFKSYNVSASKEYNRLSCSCFSTATT----STNYEFSDGSSEV 87

Query: 91  ELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE 150
           ELRL LGS + +S KDIFVDADGT L VRV RSGSF TLI+TN LFDKIKP ETIWYID+
Sbjct: 88  ELRLPLGSQDYESGKDIFVDADGTSLIVRVKRSGSFTTLIQTNYLFDKIKPAETIWYIDD 147

Query: 151 DQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210
           DQLVINLKKQDPELKWPDIVESWESLTAG+MQLLKGTSI++VGDSTE+N+KVA ELA GL
Sbjct: 148 DQLVINLKKQDPELKWPDIVESWESLTAGAMQLLKGTSIYIVGDSTEINQKVARELAGGL 207

Query: 211 GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESL 252
           GYTPL T+ELLET+ KQTIDSW+LAEGSDSV   E  +LESL
Sbjct: 208 GYTPLDTQELLETYTKQTIDSWVLAEGSDSVAEAESAILESL 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071393|ref|XP_002303438.1| shikimate kinase-like protein [Populus trichocarpa] gi|222840870|gb|EEE78417.1| shikimate kinase-like protein [Populus trichocarpa]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/239 (66%), Positives = 184/239 (76%), Gaps = 13/239 (5%)

Query: 15  SISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVV-PIKTHDRRRFTCSNSLSS 73
           S+S  P S S+T   S    S+SI           KS N   P+  +   RF+C N +S+
Sbjct: 25  SLSNIPFSISKTNFTSVANFSLSI--------PASKSNNASSPLNRY--SRFSC-NCIST 73

Query: 74  IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETN 133
              NT+ YEFSD S+E+ELRL L  L+IQSS+DIFVDADGT L V+V  SGS ITLIETN
Sbjct: 74  ATPNTN-YEFSDSSSEVELRLSLVGLDIQSSRDIFVDADGTSLVVQVQHSGSHITLIETN 132

Query: 134 QLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVG 193
           ++F+KIKP ETIW+ID+DQLVIN+KKQDP+LKWPDIVESWESLTAGSMQLLKG SIFLVG
Sbjct: 133 KMFEKIKPAETIWFIDDDQLVINMKKQDPDLKWPDIVESWESLTAGSMQLLKGASIFLVG 192

Query: 194 DSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESL 252
           DSTE+N+KVA ELAVGLGYT L T+ELLETFAKQTIDSW+LAEGSDSV   EC +LESL
Sbjct: 193 DSTEINQKVARELAVGLGYTLLDTQELLETFAKQTIDSWVLAEGSDSVAEAECAILESL 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465896|ref|XP_004150663.1| PREDICTED: uncharacterized protein LOC101203272 [Cucumis sativus] gi|449517683|ref|XP_004165874.1| PREDICTED: uncharacterized LOC101203272 [Cucumis sativus]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/209 (69%), Positives = 171/209 (81%)

Query: 44  ISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQS 103
           IS++L    ++ P  T    RFT + S S+ P  T  YEF+D S+E+ELRLQLG+ +I+S
Sbjct: 40  ISTALTSCFSLSPSNTRFSSRFTRNCSSSTAPVRTLDYEFTDSSSEVELRLQLGTQDIRS 99

Query: 104 SKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPE 163
           SKD++VDA+ T LT+RV R GS ITL+ET QLF+KIKP ETIWYIDEDQLVINLKK DP+
Sbjct: 100 SKDVYVDANDTSLTIRVQRPGSIITLLETKQLFEKIKPAETIWYIDEDQLVINLKKHDPD 159

Query: 164 LKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223
           LKWPDIVESWESLTAG  QLLKGTSIFL+GDST++N+KVA ELAVGLGYTPLSTKELLET
Sbjct: 160 LKWPDIVESWESLTAGFAQLLKGTSIFLIGDSTDINQKVAHELAVGLGYTPLSTKELLET 219

Query: 224 FAKQTIDSWMLAEGSDSVVNGECDVLESL 252
            +KQTIDSWMLAEGSD+V   E  V+ESL
Sbjct: 220 LSKQTIDSWMLAEGSDAVAQVENTVIESL 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427143|ref|XP_002277265.1| PREDICTED: uncharacterized protein LOC100266016 [Vitis vinifera] gi|297742063|emb|CBI33850.3| unnamed protein product [Vitis vinifera]

 Score =  289 bits (739), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 150/246 (60%), Positives = 187/246 (76%), Gaps = 19/246 (7%)

Query: 12  SLSSISQNPISKSETQH----FSSPRHSVSIF-KPIFISSSLHKSTNVVPIKTHDRRRFT 66
           SL   SQNP +  +  H     SSP+ ++++F  P FIS++               RR +
Sbjct: 4   SLFFFSQNPFTSPQISHPKISLSSPKPTLTLFTPPPFISNNA-------------TRRLS 50

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  +LS+I  N S YEFSD S+E+ELRLQLG     SS+DIFVDA+ + L + V +SGSF
Sbjct: 51  C-KALSTISVNPSNYEFSDASSEMELRLQLGGGGTLSSRDIFVDAEDSSLKIGVKQSGSF 109

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           ITL+E N+L++KIK +ETIWYIDEDQLV+NLKKQDP+LKWPDIVESWESLTAG+MQLLKG
Sbjct: 110 ITLVEINKLYEKIKSSETIWYIDEDQLVVNLKKQDPDLKWPDIVESWESLTAGAMQLLKG 169

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246
           TSI++VGDSTE+N+KVA ELAVGLGYTPL+TKELLETFAKQ+IDSW+ A+GS+SV   E 
Sbjct: 170 TSIYIVGDSTEINDKVARELAVGLGYTPLNTKELLETFAKQSIDSWVTADGSESVAEAES 229

Query: 247 DVLESL 252
            VLE+L
Sbjct: 230 AVLENL 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490874|gb|AFK33503.1| unknown [Lotus japonicus]

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/186 (69%), Positives = 158/186 (84%), Gaps = 1/186 (0%)

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  S ++ P  T+ YEFSDGS+E+ELRL +G L+IQS++DI VDAD + L ++V RSGS 
Sbjct: 56  CKCSYTA-PVPTTTYEFSDGSSEMELRLNIGGLDIQSTRDISVDADDSSLAIKVLRSGSP 114

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           +TLIETN LFD+IKP+ETIWYIDEDQLV+N KKQDP+LKWPDI+ESWESL AGS QLL+G
Sbjct: 115 LTLIETNPLFDRIKPSETIWYIDEDQLVVNFKKQDPDLKWPDIMESWESLAAGSTQLLQG 174

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246
           TSI+LVGDSTE+N+KVA ELA+GLGYTPL+TKELLE + KQT+DSW+LAEG DSV   E 
Sbjct: 175 TSIYLVGDSTEINQKVAQELAIGLGYTPLNTKELLEAYTKQTVDSWLLAEGPDSVAEAES 234

Query: 247 DVLESL 252
            VLES+
Sbjct: 235 SVLESM 240

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497645|ref|XP_003517670.1| PREDICTED: uncharacterized protein LOC100816906 [Glycine max]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 134/199 (67%), Positives = 163/199 (81%), Gaps = 4/199 (2%)

Query: 55  VPIKTHDR-RRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADG 113
           +P K + R R   CS   S+ P +T+ YEFSDGS+E+ELRL +G L+++SS+DI VD + 
Sbjct: 37  LPQKHYLRLRPCKCS---STAPVSTTTYEFSDGSSEVELRLNIGGLDVRSSRDILVDTND 93

Query: 114 TCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESW 173
           T L +RV R GS ITLIETN LFD++K +ETIWYID+DQLV+N KKQDP+LKWPDI+ESW
Sbjct: 94  TSLAIRVLRPGSPITLIETNPLFDRVKSSETIWYIDDDQLVVNFKKQDPDLKWPDIMESW 153

Query: 174 ESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM 233
           ESLTAGS QLL+GTSI+LVGDSTE+N+KVA ELA GLGYTPLSTKELLE + KQT+DSW+
Sbjct: 154 ESLTAGSPQLLQGTSIYLVGDSTEINQKVAQELATGLGYTPLSTKELLELYTKQTVDSWL 213

Query: 234 LAEGSDSVVNGECDVLESL 252
           LAEGSDSV   E  VLES+
Sbjct: 214 LAEGSDSVAEAESAVLESI 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485087|ref|XP_003612831.1| Shikimate kinase-like protein [Medicago truncatula] gi|355514166|gb|AES95789.1| Shikimate kinase-like protein [Medicago truncatula]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 130/186 (69%), Positives = 160/186 (86%), Gaps = 1/186 (0%)

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  S ++ P +T+ YEFSD ++E+ELRL +GS++++S+KDI VDA+ T LT+RV +SGS 
Sbjct: 57  CKCSFTA-PVSTTTYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSP 115

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           ITLI+TN LFD+IKP+ETIWYID+D LV+N KK DPELKWPDI+ESWESL AGS QLLKG
Sbjct: 116 ITLIDTNPLFDRIKPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKG 175

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246
           TSI+LVGDSTE+N+KVA ELA GLGYTPLSTKELLET++ QT+DSW+LAEGSDSV  GE 
Sbjct: 176 TSIYLVGDSTEINQKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSDSVAEGEG 235

Query: 247 DVLESL 252
            VLES+
Sbjct: 236 TVLESI 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504258|gb|AFK40195.1| unknown [Medicago truncatula]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/186 (69%), Positives = 159/186 (85%), Gaps = 1/186 (0%)

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  S ++ P +T+ YEFSD ++E+ELRL +GS++++S+KDI VDA+ T LT+RV +SGS 
Sbjct: 57  CKCSFTA-PVSTTTYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSP 115

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           ITLI+TN LFD+IKP+ETIWYID+D LV+N KK DPELKWPDI+ESWESL AGS QLLKG
Sbjct: 116 ITLIDTNPLFDRIKPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKG 175

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246
           TSI+L GDSTE+N+KVA ELA GLGYTPLSTKELLET++ QT+DSW+LAEGSDSV  GE 
Sbjct: 176 TSIYLAGDSTEINQKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSDSVAEGEG 235

Query: 247 DVLESL 252
            VLES+
Sbjct: 236 TVLESI 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072810|gb|ACJ84765.1| unknown [Medicago truncatula]

 Score =  266 bits (680), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 127/185 (68%), Positives = 157/185 (84%), Gaps = 1/185 (0%)

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  S ++ P +T+ YEFSD ++E+ELRL +GS++++S+KDI VDA+ T LT+RV +SGS 
Sbjct: 57  CKCSFTA-PVSTTTYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSP 115

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           ITLI+TN LFD+IKP+ETIWYID+D LV+N KK DPELKWPDI+ESWESL AGS QLLKG
Sbjct: 116 ITLIDTNPLFDRIKPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKG 175

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246
           TSI+L GDSTE+N+KVA ELA GLGYTPLSTKELLET++ QT+DSW+LAE SDSV  GE 
Sbjct: 176 TSIYLAGDSTEINQKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAESSDSVAEGEG 235

Query: 247 DVLES 251
            VLE+
Sbjct: 236 TVLEA 240

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767344|emb|CAN71267.1| hypothetical protein VITISV_017889 [Vitis vinifera]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 138/225 (61%), Positives = 170/225 (75%), Gaps = 19/225 (8%)

Query: 12  SLSSISQNPISKSETQH----FSSPRHSVSIF-KPIFISSSLHKSTNVVPIKTHDRRRFT 66
           SL   SQNP +  +  H     S P+ ++++F  P FIS++               RR +
Sbjct: 4   SLFFFSQNPFTSPQISHPKISLSXPKPTLTLFTPPPFISNNA-------------TRRLS 50

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  +LS+I  N S YEFSD S+E+ELRLQLG     SS+DIFVDA+ + L + V +SGSF
Sbjct: 51  C-KALSTISLNPSNYEFSDASSEMELRLQLGGGGTLSSRDIFVDAEDSSLKIGVKQSGSF 109

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           ITL+E N L++KIK +ETIWYIDEDQLV+NLKKQDP+LKWPDIVESWESLTAG+MQLLKG
Sbjct: 110 ITLVEINXLYEKIKSSETIWYIDEDQLVVNLKKQDPDLKWPDIVESWESLTAGAMQLLKG 169

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDS 231
           TSI++VGDSTE+N+KVA ELAVGLGYTPL+TKELLETFAKQ+IDS
Sbjct: 170 TSIYIVGDSTEINDKVARELAVGLGYTPLNTKELLETFAKQSIDS 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2062486	387	SKL2 "shikimate kinase-like 2"	0.927	0.625	0.586	3.1e-67

TAIR|locus:2062486 SKL2 "shikimate kinase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 146/249 (58%), Positives = 179/249 (71%)

Query:     5 AATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDR-R 63
             A  ++  SL+ ++      S  +  SSPR   S F  +        S NV+P    DR  
Sbjct:     9 AIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIP----DRFN 63

Query:    64 RFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS 123
              F+C N LS++  +T  YEF+DG  E+ELRL+L + EI S KDI VDADGT L V+  R+
Sbjct:    64 SFSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLAVKEKRN 122

Query:   124 GSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQL 183
             G  ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESLTAG MQL
Sbjct:   123 GLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLTAGMMQL 182

Query:   184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
             LKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAEG DSV  
Sbjct:   183 LKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEGPDSVAE 242

Query:   244 GECDVLESL 252
              E  VLESL
Sbjct:   243 AESSVLESL 251


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      261       261   0.00090  114 3  11 23  0.37    34
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  196 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.02u 0.11s 22.13t   Elapsed:  00:00:01
  Total cpu time:  22.02u 0.11s 22.13t   Elapsed:  00:00:01
  Start:  Sat May 11 05:36:01 2013   End:  Sat May 11 05:36:02 2013

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA;TAS

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009069 "serine family amino acid metabolic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82290	SKL2_ARATH	No assigned EC number	0.5795	0.9003	0.6072	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015711001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (371 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002215001	SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (245 aa)				•	•		•		0.508
	GSVIVG00021574001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (190 aa)				•			•		0.425
	GSVIVG00002992001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)				•					0.408
	GSVIVG00026943001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)				•					0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
cd06467	85	cd06467, p23_NUDC_like, p23_like domain of NUD (nu	4e-10
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	8e-09

>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear distribution) C and similar proteins

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 81  YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIK 140
           Y ++    E+ + + L   E   SKD+ V+     L V V        L++  +L+ K+K
Sbjct: 1   YSWTQTLDEVTVTIPLP--EGTKSKDVKVEITPKHLKVGVKGG---EPLLDG-ELYAKVK 54

Query: 141 PTETIWYI-DEDQLVINLKKQDPELKWPDIV 170
             E+ W + D   L I L+K++    WP +V
Sbjct: 55  VDESTWTLEDGKLLEITLEKRNEGEWWPSLV 85

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. This group also includes the human broadly immunogenic tumor associated antigen, CML66, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of CML66 is limited to testis and heart. Length = 85

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 51.1 bits (123), Expect = 8e-09
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 104 SKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPE 163
            KD+ V+     LTV V   G    L+E   LF  I P E+ W +++ ++ I LKK++P 
Sbjct: 19  KKDVKVEFTPKSLTVSVKGGGGKEYLLEGE-LFGPIDPEESKWTVEDRKIEITLKKKEPG 77

Query: 164 LKWPDIV 170
             WP + 
Sbjct: 78  EWWPRLE 84

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.94
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	99.92
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	99.92
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	99.9
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	99.89
PRK13948	182	shikimate kinase; Provisional	99.86
PLN02199	303	shikimate kinase	99.86
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.83
PRK00625	173	shikimate kinase; Provisional	99.82
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	99.81
PRK13949	169	shikimate kinase; Provisional	99.77
PRK13947	171	shikimate kinase; Provisional	99.77
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.77
PRK13946	184	shikimate kinase; Provisional	99.75
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	99.71
PRK00131	175	aroK shikimate kinase; Reviewed	99.71
PRK05057	172	aroK shikimate kinase I; Reviewed	99.7
PRK03731	171	aroL shikimate kinase II; Reviewed	99.68
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.67
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	99.64
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.64
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.63
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	99.62
cd06463	84	p23_like Proteins containing this p23_like domain	99.53
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	99.51
PRK09169	2316	hypothetical protein; Validated	99.51
PRK03839	180	putative kinase; Provisional	99.49
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	99.36
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.28
PRK14532	188	adenylate kinase; Provisional	99.22
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	99.22
PRK04182	180	cytidylate kinase; Provisional	99.18
PRK14530	215	adenylate kinase; Provisional	99.12
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.97
PRK06217	183	hypothetical protein; Validated	98.93
PRK13975	196	thymidylate kinase; Provisional	98.93
PRK01184	184	hypothetical protein; Provisional	98.8
PLN02674	244	adenylate kinase	98.77
cd06488	87	p23_melusin_like p23_like domain similar to the C-	98.76
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.73
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.72
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.72
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.71
PTZ00088	229	adenylate kinase 1; Provisional	98.69
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.69
PLN02165	334	adenylate isopentenyltransferase	98.69
cd00298	80	ACD_sHsps_p23-like This domain family includes the	98.68
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.68
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.64
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.62
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.61
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.59
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.58
PRK05541	176	adenylylsulfate kinase; Provisional	98.57
PRK00279	215	adk adenylate kinase; Reviewed	98.54
PRK02496	184	adk adenylate kinase; Provisional	98.54
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.52
PHA02530	300	pseT polynucleotide kinase; Provisional	98.51
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	98.5
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.5
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.49
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.48
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.47
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.46
PRK06547	172	hypothetical protein; Provisional	98.45
PRK08118	167	topology modulation protein; Reviewed	98.44
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.42
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.42
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.34
PRK14531	183	adenylate kinase; Provisional	98.33
PRK14526	211	adenylate kinase; Provisional	98.27
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.24
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.19
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.17
PRK00023	225	cmk cytidylate kinase; Provisional	98.12
PRK14527	191	adenylate kinase; Provisional	98.12
PRK00889	175	adenylylsulfate kinase; Provisional	98.11
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.09
PRK07261	171	topology modulation protein; Provisional	98.07
PRK14529	223	adenylate kinase; Provisional	98.05
PLN02200	234	adenylate kinase family protein	98.05
PRK13808	333	adenylate kinase; Provisional	98.05
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	98.04
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.04
PRK14528	186	adenylate kinase; Provisional	98.03
PRK04040	188	adenylate kinase; Provisional	98.03
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.02
PRK06762	166	hypothetical protein; Provisional	98.01
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.0
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.0
PLN02459	261	probable adenylate kinase	97.97
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.96
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.96
PF00004	132	AAA: ATPase family associated with various cellula	97.95
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.94
PTZ00451	244	dephospho-CoA kinase; Provisional	97.93
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.91
PRK09825	176	idnK D-gluconate kinase; Provisional	97.86
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.85
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	97.81
PLN02422	232	dephospho-CoA kinase	97.8
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.75
PRK11545	163	gntK gluconate kinase 1; Provisional	97.74
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.73
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.73
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.69
PRK03846	198	adenylylsulfate kinase; Provisional	97.68
smart00382	148	AAA ATPases associated with a variety of cellular	97.65
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.64
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.64
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.62
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.62
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.59
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.56
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.55
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.51
PRK12338	319	hypothetical protein; Provisional	97.49
PRK10646	153	ADP-binding protein; Provisional	97.48
PRK00300	205	gmk guanylate kinase; Provisional	97.47
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.46
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	97.44
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.44
PRK08356	195	hypothetical protein; Provisional	97.4
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.39
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	97.34
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.31
COG0645	170	Predicted kinase [General function prediction only	97.29
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.25
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.23
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.22
KOG4379	596	consensus Uncharacterized conserved protein (tumor	97.22
PRK08233	182	hypothetical protein; Provisional	97.2
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.19
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	97.18
PHA00729	226	NTP-binding motif containing protein	97.14
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.14
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.07
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.05
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.04
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.02
PRK05480	209	uridine/cytidine kinase; Provisional	97.02
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	96.99
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.98
PRK04220	301	2-phosphoglycerate kinase; Provisional	96.97
CHL00181	287	cbbX CbbX; Provisional	96.96
PRK06761	282	hypothetical protein; Provisional	96.95
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.95
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.94
PLN02842	505	nucleotide kinase	96.92
COG0802	149	Predicted ATPase or kinase [General function predi	96.92
PRK00698	205	tmk thymidylate kinase; Validated	96.87
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.86
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.86
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	96.85
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.79
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.77
PRK12402	337	replication factor C small subunit 2; Reviewed	96.72
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.72
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	96.71
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	96.65
KOG3260	224	consensus Calcyclin-binding protein CacyBP [Signal	96.63
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.63
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.58
PRK12337	475	2-phosphoglycerate kinase; Provisional	96.57
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.56
COG0714	329	MoxR-like ATPases [General function prediction onl	96.56
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.54
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.53
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.52
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.51
PRK06696	223	uridine kinase; Validated	96.49
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.48
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.47
PHA02244	383	ATPase-like protein	96.45
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.45
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.45
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	96.45
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.45
PRK09183	259	transposase/IS protein; Provisional	96.45
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.45
PRK13973	213	thymidylate kinase; Provisional	96.44
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.44
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.44
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.39
PRK08181	269	transposase; Validated	96.38
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.37
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.37
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.37
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.36
PLN02772	398	guanylate kinase	96.33
PRK04195	482	replication factor C large subunit; Provisional	96.33
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	96.32
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.32
PLN02748	468	tRNA dimethylallyltransferase	96.3
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.29
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.28
PF13173	128	AAA_14: AAA domain	96.27
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.26
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.26
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.24
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	96.23
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	96.21
PLN02840	421	tRNA dimethylallyltransferase	96.2
PRK14738	206	gmk guanylate kinase; Provisional	96.19
PRK06526	254	transposase; Provisional	96.19
PRK14737	186	gmk guanylate kinase; Provisional	96.17
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	96.15
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.14
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	96.13
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.13
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	96.11
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	96.11
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	96.05
PRK09087	226	hypothetical protein; Validated	96.04
COG0071	146	IbpA Molecular chaperone (small heat shock protein	96.04
PRK00440	319	rfc replication factor C small subunit; Reviewed	96.03
PRK13695	174	putative NTPase; Provisional	95.98
PRK07667	193	uridine kinase; Provisional	95.96
CHL00176	638	ftsH cell division protein; Validated	95.93
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	95.93
PLN03025	319	replication factor C subunit; Provisional	95.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.91
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	95.9
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	95.9
KOG3158	180	consensus HSP90 co-chaperone p23 [Posttranslationa	95.89
PRK13342	413	recombination factor protein RarA; Reviewed	95.83
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.83
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	95.81
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	95.77
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	95.77
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.73
PF05729	166	NACHT: NACHT domain	95.73
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	95.71
PRK12377	248	putative replication protein; Provisional	95.7
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.69
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	95.68
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.66
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.63
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.62
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.61
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.6
cd03112	158	CobW_like The function of this protein family is u	95.59
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	95.59
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.57
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.57
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	95.57
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.57
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.56
PRK08939	306	primosomal protein DnaI; Reviewed	95.54
CHL00195	489	ycf46 Ycf46; Provisional	95.54
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.53
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.52
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.52
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.5
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.5
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	95.49
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.49
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.48
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.47
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.46
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.46
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.46
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.45
PRK06921	266	hypothetical protein; Provisional	95.45
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.44
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.44
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	95.43
PRK07429	327	phosphoribulokinase; Provisional	95.42
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	95.41
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.41
cd01394	218	radB RadB. The archaeal protein radB shares simila	95.4
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.4
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	95.4
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.39
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.38
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.37
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.37
PRK15455	644	PrkA family serine protein kinase; Provisional	95.37
PRK04296	190	thymidine kinase; Provisional	95.35
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.34
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.34
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	95.34
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.33
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	95.33
PF07726	131	AAA_3: ATPase family associated with various cellu	95.33
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.32
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.32
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	95.3
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.3
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	95.29
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.28
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.27
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.27
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	95.27
COG2256	436	MGS1 ATPase related to the helicase subunit of the	95.27
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.26
cd02034	116	CooC The accessory protein CooC, which contains a	95.26
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.25
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	95.24
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.24
PRK06620	214	hypothetical protein; Validated	95.24
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.23
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	95.22
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.22
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.21
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.2
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.19
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	95.19
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.18
PRK08084	235	DNA replication initiation factor; Provisional	95.18
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.17
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.16
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.14
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.14
PRK15453	290	phosphoribulokinase; Provisional	95.13
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	95.13
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.13
COG1123	539	ATPase components of various ABC-type transport sy	95.12
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.12
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	95.11
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	95.1
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	95.07
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.06
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.05
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.05
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.05
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	95.04
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	95.04
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	95.04
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	95.03
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	95.03
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.02
PRK08116	268	hypothetical protein; Validated	95.02
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.01
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	95.0
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	95.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	94.99
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	94.98
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	94.98
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.96
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	94.95
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	94.95
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	94.94
PTZ00301	210	uridine kinase; Provisional	94.94
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	94.94
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	94.93
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	94.93
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	94.92
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	94.92
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	94.91
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	94.91
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	94.9
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	94.89
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	94.89
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	94.89
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	94.88
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	94.88
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.88
PRK10908	222	cell division protein FtsE; Provisional	94.87
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	94.87
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	94.86
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.86
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	94.86
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	94.83
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	94.83
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	94.83
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	94.83
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	94.83
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	94.83
PRK13341	725	recombination factor protein RarA/unknown domain f	94.82
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	94.82
cd03234	226	ABCG_White The White subfamily represents ABC tran	94.81
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	94.81
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	94.8
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	94.8
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	94.8
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	94.8
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	94.8
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	94.79
cd03215	182	ABC_Carb_Monos_II This family represents domain II	94.78
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	94.78
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	94.78
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	94.77
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	94.77
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	94.76
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	94.75
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	94.75
cd03246	173	ABCC_Protease_Secretion This family represents the	94.74
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	94.74
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	94.74
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	94.74
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.74
PRK10416	318	signal recognition particle-docking protein FtsY;	94.74
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	94.72
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	94.71
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	94.71
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	94.71
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	94.71
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	94.71
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	94.7
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	94.7
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	94.7
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	94.69
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	94.68
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	94.68
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	94.68
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	94.68
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	94.68
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	94.68
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	94.67
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	94.67
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	94.66
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	94.65
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	94.65
PHA02544	316	44 clamp loader, small subunit; Provisional	94.65
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	94.63
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	94.63
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	94.62
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	94.62
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	94.62
PRK09984	262	phosphonate/organophosphate ester transporter subu	94.62
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	94.61
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	94.6
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	94.6
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	94.6
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	94.55
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	94.55
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	94.54
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	94.53
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	94.53
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	94.53
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	94.53
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	94.53
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	94.53
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	94.53
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	94.52
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	94.5
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	94.5
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	94.5
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	94.47
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	94.46
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	94.46
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	94.45
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	94.43
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	94.4
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	94.4
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	94.39
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	94.38
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	94.38
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	94.38
PRK06893	229	DNA replication initiation factor; Validated	94.38
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	94.37
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	94.37
PRK13531	498	regulatory ATPase RavA; Provisional	94.37
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	94.36
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	94.36
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	94.36
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	94.35
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	94.35
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	94.35
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	94.33
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	94.33
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	94.31
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	94.31
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	94.3
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	94.3
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	94.29
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	94.27
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	94.27
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.27
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	94.25
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	94.24
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	94.22
KOG0692	595	consensus Pentafunctional AROM protein [Amino acid	94.2
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	94.2
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	94.2
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	94.19
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	94.19
PRK06835	329	DNA replication protein DnaC; Validated	94.18
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	94.17
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	94.17
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	94.15
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	94.14
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	94.11
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	94.1
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	94.1
PRK13974	212	thymidylate kinase; Provisional	94.1
PRK03695	248	vitamin B12-transporter ATPase; Provisional	94.1
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	94.09
PRK13409	590	putative ATPase RIL; Provisional	94.09
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	94.07
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	94.06
PRK13546	264	teichoic acids export protein ATP-binding subunit;	94.05
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	94.03
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	94.03
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	94.02
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	94.02
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	94.01
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	94.01

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.94  E-value=7.2e-27  Score=201.50  Aligned_cols=73  Identities=21%  Similarity=0.228  Sum_probs=69.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccCC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEPL  258 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~l  258 (261)
                      .+||+||||||+|||||||.||++|||+|+|+|++||+.+|+||++||+++||++||++|.+||.+++..++.
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~   74 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNA   74 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCe
Confidence            4689999999999999999999999999999999999999999999999999999999999999999987643

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=99.92  E-value=3.7e-25  Score=170.08  Aligned_cols=86  Identities=26%  Similarity=0.586  Sum_probs=81.5

Q ss_pred             eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-CeEEEEEEe
Q 024881           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK  159 (261)
Q Consensus        81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~~lvv~L~K  159 (261)
                      |.|+||+.||+|+||||...++++||+.|+++.++|+|++++++++   |+ |+||++|++|||+|+||| +.|+|+|+|
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~---i~-G~L~~~V~~des~Wtled~~~l~i~L~K   76 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPI---ID-GELYNEVKVEESSWLIEDGKVVTVNLEK   76 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceE---Ee-CcccCcccccccEEEEeCCCEEEEEEEE
Confidence            8999999999999999986568999999999999999999998777   99 999999999999999999 789999999


Q ss_pred             cCCCCCCcccccchhHHH
Q 024881          160 QDPELKWPDIVESWESLT  177 (261)
Q Consensus       160 ~d~~m~Wp~~~e~We~l~  177 (261)
                      .++ |+|      |+||+
T Consensus        77 ~~~-~~w------W~~l~   87 (87)
T cd06492          77 INK-MEW------WSRLV   87 (87)
T ss_pred             CCC-Ccc------ccccC
Confidence            998 999      99985

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=99.92  E-value=8.4e-25  Score=174.11  Aligned_cols=92  Identities=20%  Similarity=0.492  Sum_probs=82.1

Q ss_pred             CCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEcc---CCcceeeeecccccCCCCCCceeeEEec-C
Q 024881           76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR---SGSFITLIETNQLFDKIKPTETIWYIDE-D  151 (261)
Q Consensus        76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~---~~~~~tlId~g~L~~kIk~~Et~W~IdD-~  151 (261)
                      +.+++|.|+||+.||+|++|+|+. .+++||+.|+++.++|+|++++   +.++   |+ |+||++|++|||+|+||| +
T Consensus         2 ~~~e~Y~WtQTl~eV~V~i~lp~~-~~~~kdv~v~i~~~~l~v~~~~~~~~~~~---i~-G~L~~~V~~des~Wtled~~   76 (102)
T cd06495           2 AVRENYTWSQDYTDVEVRVPVPKD-VVKGRQVSVDLQSSSIRVSVRDGGGEKVL---ME-GEFTHKINTENSLWSLEPGK   76 (102)
T ss_pred             CcCCceEEEeECCeEEEEEECCCC-CccceEEEEEEEcCEEEEEEecCCCCceE---Ee-CcccCcccCccceEEEeCCC
Confidence            457899999999999999999993 3689999999999999999985   2244   99 999999999999999999 7


Q ss_pred             eEEEEEEecCCCCCCcccccchhHHHHHH
Q 024881          152 QLVINLKKQDPELKWPDIVESWESLTAGS  180 (261)
Q Consensus       152 ~lvv~L~K~d~~m~Wp~~~e~We~l~~g~  180 (261)
                      .|+|+|+|.+  +.|      |+||++|=
T Consensus        77 ~l~I~L~K~~--~~w------W~~v~~g~   97 (102)
T cd06495          77 CVLLSLSKCS--EVW------WNAVLKGE   97 (102)
T ss_pred             EEEEEEEECC--Ccc------cchhhCCC
Confidence            7999999995  679      99997763

Little is known about the function of the proteins in this subgroup.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=99.90  E-value=7.7e-24  Score=165.61  Aligned_cols=89  Identities=19%  Similarity=0.373  Sum_probs=81.8

Q ss_pred             CCCCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCe-
Q 024881           74 IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-  152 (261)
Q Consensus        74 ~~~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~-  152 (261)
                      +|..|++|.|+||+.||+|++|+|.  ++++|||.|+++.++|+|+++++. +   |+ |+||++|++|||+|+|+|+. 
T Consensus         1 ~~~~~~~y~W~QT~~eV~v~i~lp~--~~~~kdv~V~i~~~~l~V~~~g~~-~---l~-G~L~~~I~~destWtled~k~   73 (93)
T cd06494           1 VPCKTPWGCWYQTMDEVFIEVNVPP--GTRAKDVKCKLGSRDISLAVKGQE-V---LK-GKLFDSVVADECTWTLEDRKL   73 (93)
T ss_pred             CCccCCCcEEEeEcCEEEEEEECCC--CCceeeEEEEEEcCEEEEEECCEE-E---Ec-CcccCccCcccCEEEEECCcE
Confidence            4778999999999999999999999  799999999999999999998874 5   99 99999999999999999966 


Q ss_pred             EEEEEEecCCCC--CCcccccchhHH
Q 024881          153 LVINLKKQDPEL--KWPDIVESWESL  176 (261)
Q Consensus       153 lvv~L~K~d~~m--~Wp~~~e~We~l  176 (261)
                      |+|+|+|.++ +  +|      |++|
T Consensus        74 l~I~L~K~~~-~~~~~------W~sl   92 (93)
T cd06494          74 IRIVLTKSNR-DAGNC------WKSL   92 (93)
T ss_pred             EEEEEEeCCC-CCCcc------cccc
Confidence            7999999998 7  47      7765

Little is known about the function of the proteins in this subgroup.

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-23  Score=183.24  Aligned_cols=97  Identities=24%  Similarity=0.509  Sum_probs=89.7

Q ss_pred             cCCCCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-C
Q 024881           73 SIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-D  151 (261)
Q Consensus        73 ~~~~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~  151 (261)
                      -..+..++|+|+|||.||+|+||||+.+ .+||+|.|.|.++|++|++|+++++   ++ |+||++||++||.|+||| +
T Consensus        13 ~ng~~~~~y~W~QtL~EV~i~i~vp~~~-~ksk~v~~~Iq~~hI~V~~kg~~~i---ld-G~L~~~vk~des~WtiEd~k   87 (179)
T KOG2265|consen   13 GNGADEEKYTWDQTLEEVEIQIPVPPGT-AKSKDVHCSIQSKHIKVGLKGQPPI---LD-GELSHSVKVDESTWTIEDGK   87 (179)
T ss_pred             cCCccccceeeeeehhheEEEeecCCCC-cccceEEEEeeeeEEEEecCCCCce---ec-CccccccccccceEEecCCE
Confidence            3456778999999999999999999964 6999999999999999999999977   99 999999999999999999 8


Q ss_pred             eEEEEEEecCCCCCCcccccchhHHHHHHH
Q 024881          152 QLVINLKKQDPELKWPDIVESWESLTAGSM  181 (261)
Q Consensus       152 ~lvv~L~K~d~~m~Wp~~~e~We~l~~g~~  181 (261)
                      .+++.|+|.+. |+|      |.|++.|=.
T Consensus        88 ~i~i~l~K~~~-~eW------W~~ll~gep  110 (179)
T KOG2265|consen   88 MIVILLKKSNK-MEW------WDSLLEGEP  110 (179)
T ss_pred             EEEEEeeccch-HHH------HHHHHcCCC
Confidence            88999999998 999      999998754

>PRK13948 shikimate kinase; Provisional

Probab=99.86  E-value=3.9e-22  Score=170.53  Aligned_cols=74  Identities=18%  Similarity=0.155  Sum_probs=70.2

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      ..+.+|+|+||||+||||||+.||++||+.|+|+|.+||+.+|++|++||++.||++||++|.++|++++...+
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~   81 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDY   81 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999986544

>PLN02199 shikimate kinase

Probab=99.86  E-value=1.1e-21  Score=181.94  Aligned_cols=82  Identities=22%  Similarity=0.276  Sum_probs=76.9

Q ss_pred             HHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH-hCCCHHHHHHhhCchhHHhhHHHHHHHHhcc
Q 024881          177 TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF-AKQTIDSWMLAEGSDSVVNGECDVLESLIMF  255 (261)
Q Consensus       177 ~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~-agkSI~eIFaeeGE~~FRelEs~VLeels~~  255 (261)
                      .+-+...|+|.+|+||||||+||||||+.||+.|||+|+|+|.+||+. .|++|++||+..||+.||++|+++|++++..
T Consensus        93 a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~  172 (303)
T PLN02199         93 AEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSR  172 (303)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhc
Confidence            467788999999999999999999999999999999999999999997 7999999999999999999999999999865


Q ss_pred             cCC
Q 024881          256 EPL  258 (261)
Q Consensus       256 ~~l  258 (261)
                      .+.
T Consensus       173 ~~~  175 (303)
T PLN02199        173 YQV  175 (303)
T ss_pred             CCE
Confidence            553

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.83  E-value=5.6e-21  Score=185.82  Aligned_cols=71  Identities=15%  Similarity=0.113  Sum_probs=67.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      ..||||||||+|||||||.||++|||+|+|+|++||+.+|+||+|||+++||++||++|+++|++++...+
T Consensus         7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~   77 (542)
T PRK14021          7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFD   77 (542)
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999885444

>PRK00625 shikimate kinase; Provisional

Probab=99.82  E-value=2.1e-20  Score=158.33  Aligned_cols=68  Identities=24%  Similarity=0.181  Sum_probs=65.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC----CHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ----TIDSWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk----SI~eIFaeeGE~~FRelEs~VLeels~  254 (261)
                      +||+||||||+||||+|+.||++|||+|+|+|++||+.+|.    ++++||++.||++||++|.++|+++..
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~   72 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPV   72 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            48999999999999999999999999999999999999998    999999999999999999999999865

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=99.81  E-value=8.5e-20  Score=137.68  Aligned_cols=84  Identities=20%  Similarity=0.426  Sum_probs=76.6

Q ss_pred             eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-CeEEEEEEe
Q 024881           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK  159 (261)
Q Consensus        81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~~lvv~L~K  159 (261)
                      |.|+|+..+|+|.|++|.  +++++|+.|+++.++|.|.+++.+.+   ++ |+||++|++++|+|+++| +.|.|+|+|
T Consensus         1 Y~W~Qt~~~V~v~i~~p~--~~~~~dv~v~~~~~~l~v~~~~~~~~---~~-g~L~~~I~~d~Stw~i~~~~~l~i~L~K   74 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPE--DTTKEDIRIKFLPDHISIALKDQAPL---LE-GKLYSSIDHESSTWIIKENKSLEVSLIK   74 (85)
T ss_pred             CccEEeCCEEEEEEECCC--CCChhhEEEEEecCEEEEEeCCCCeE---Ee-CcccCcccccCcEEEEeCCCEEEEEEEE
Confidence            899999999999999997  78999999999999999999865555   88 999999999999999987 579999999


Q ss_pred             cCCCCCCcccccchhHHH
Q 024881          160 QDPELKWPDIVESWESLT  177 (261)
Q Consensus       160 ~d~~m~Wp~~~e~We~l~  177 (261)
                      .+. ++|      |+||+
T Consensus        75 ~~~-~~~------W~~L~   85 (85)
T cd06493          75 KDE-GPT------WPELV   85 (85)
T ss_pred             CCC-Ccc------ccccC
Confidence            998 788      88874

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>PRK13949 shikimate kinase; Provisional

Probab=99.77  E-value=6.2e-19  Score=147.37  Aligned_cols=71  Identities=23%  Similarity=0.273  Sum_probs=67.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      .+|+|||+||+||||+|+.||+.|||+|+|+|.+||+..|++|.+||.+.||+.||++|.++|+++....+
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~   72 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFED   72 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999875544

>PRK13947 shikimate kinase; Provisional

Probab=99.77  E-value=6.2e-19  Score=142.44  Aligned_cols=70  Identities=17%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      ||+|+|+|||||||+|+.||++|||+|+|+|.++++.+|.++.++|.+.||+.||+.|.++++++....+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~   72 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKN   72 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999875443

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.77  E-value=3.2e-19  Score=145.91  Aligned_cols=63  Identities=19%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             CCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          195 STEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       195 mGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      ||+||||||+.||++|||+|+|+|.+||+.+|+||++||++.||+.||++|.++|.+++...+
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~   63 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENN   63 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCc
Confidence            899999999999999999999999999999999999999999999999999999999997654

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK13946 shikimate kinase; Provisional

Probab=99.75  E-value=3e-18  Score=143.26  Aligned_cols=75  Identities=27%  Similarity=0.242  Sum_probs=70.4

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      -|+..+|+|+|+|||||||+|+.||++|||+|+|+|.++++..|.++.+||...|++.||++|.+++.++....+
T Consensus         7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~   81 (184)
T PRK13946          7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGP   81 (184)
T ss_pred             ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC
Confidence            356789999999999999999999999999999999999999999999999999999999999999999986544

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=99.71  E-value=4e-17  Score=120.47  Aligned_cols=79  Identities=25%  Similarity=0.511  Sum_probs=72.9

Q ss_pred             eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-CeEEEEEEe
Q 024881           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK  159 (261)
Q Consensus        81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~~lvv~L~K  159 (261)
                      |.|+|+..+|.|++++|.  +.+.+|+.|+++.++|.|.+++...+   ++ |+||++|.+++|+|.+++ +.|+|+|+|
T Consensus         1 y~W~Qt~~~V~i~i~~~~--~~~~~dv~v~~~~~~l~v~~~~~~~~---l~-~~L~~~I~~~~s~w~~~~~~~v~i~L~K   74 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPE--GTKSKDVKVEITPKHLKVGVKGGEPL---LD-GELYAKVKVDESTWTLEDGKLLEITLEK   74 (85)
T ss_pred             CEEEeeCCEEEEEEECCC--CCcceeEEEEEEcCEEEEEECCCCce---Ec-CcccCceeEcCCEEEEeCCCEEEEEEEE
Confidence            899999999999999998  57899999999999999999965444   88 999999999999999999 999999999


Q ss_pred             cCCCCCC
Q 024881          160 QDPELKW  166 (261)
Q Consensus       160 ~d~~m~W  166 (261)
                      .++ ..|
T Consensus        75 ~~~-~~~   80 (85)
T cd06467          75 RNE-GEW   80 (85)
T ss_pred             CCC-Ccc
Confidence            998 555

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.71  E-value=2.8e-17  Score=130.75  Aligned_cols=75  Identities=29%  Similarity=0.364  Sum_probs=71.1

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      +++|++|+|+|++||||||+|+.||++||+.|+|.|+++++..|.++.+++.++|+..||+.|.+++.++....+
T Consensus         1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~   75 (175)
T PRK00131          1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHN   75 (175)
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC
Confidence            367899999999999999999999999999999999999999999999999999999999999999999987544

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.70  E-value=2.5e-17  Score=137.51  Aligned_cols=73  Identities=21%  Similarity=0.218  Sum_probs=68.7

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE  256 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~  256 (261)
                      .+..+|+|+|+||+||||+|+.||+.|||+|+|+|..||+..|.++.++|...|++.||+.|.++|++++...
T Consensus         2 ~~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~   74 (172)
T PRK05057          2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQ   74 (172)
T ss_pred             CCCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCC
Confidence            3456899999999999999999999999999999999999999999999999999999999999999987543

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.68  E-value=9.7e-17  Score=130.36  Aligned_cols=68  Identities=26%  Similarity=0.365  Sum_probs=65.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~  254 (261)
                      .+|+|+|+||+||||+|+.||++|||+|+|+|+++++..|.++.+++.+.|++.||++|.++++++..
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~   70 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTA   70 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            57999999999999999999999999999999999999999999999999999999999999987754

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.67  E-value=7.7e-17  Score=155.96  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=67.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      ++|+|+|+||+||||+|+.||+.|||.|+|+|++||+..|.+|.+||++.||+.||++|.++|+++....+
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~   71 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDN   71 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999975443

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=99.64  E-value=1.3e-15  Score=114.73  Aligned_cols=90  Identities=22%  Similarity=0.416  Sum_probs=76.0

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~  158 (261)
                      .+|.|+|+..+|.|+|++|.....+.+|+.|+++.++|.|.+++.++-.-.+..++||++|+|++|.|.+.++.|+|.|.
T Consensus         2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~   81 (92)
T cd06468           2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA   81 (92)
T ss_pred             ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence            48999999999999999998544468999999999999999976332221234389999999999999999999999999


Q ss_pred             ecCCCCCCcccccchhHH
Q 024881          159 KQDPELKWPDIVESWESL  176 (261)
Q Consensus       159 K~d~~m~Wp~~~e~We~l  176 (261)
                      |.++  .|      |++|
T Consensus        82 K~~~--~~------W~~L   91 (92)
T cd06468          82 KKKE--KK------WESL   91 (92)
T ss_pred             eCCC--Cc------cCcc
Confidence            9998  46      7765

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.64  E-value=4.6e-16  Score=141.21  Aligned_cols=86  Identities=17%  Similarity=0.170  Sum_probs=78.3

Q ss_pred             cccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHH
Q 024881          169 IVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV  248 (261)
Q Consensus       169 ~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~V  248 (261)
                      +.+-.+.+..-...+=++.+|+|+|+|||||||||+.||++|||+|+|+|..|++..|.++.+||...|++.||++|.++
T Consensus       116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~  195 (309)
T PRK08154        116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRA  195 (309)
T ss_pred             HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHH
Confidence            44556666666667778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 024881          249 LESLIM  254 (261)
Q Consensus       249 Leels~  254 (261)
                      |.++..
T Consensus       196 l~~ll~  201 (309)
T PRK08154        196 LERLIA  201 (309)
T ss_pred             HHHHHh
Confidence            999864

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.63  E-value=8.1e-16  Score=121.10  Aligned_cols=70  Identities=29%  Similarity=0.279  Sum_probs=66.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      ||+|+|++|+||||+|+.||+.|||.++|+|+++++..|.++.++|...|++.||+.|.+++.+++...+
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~   70 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKEN   70 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCC
Confidence            6999999999999999999999999999999999999999999999999999999999999998886544

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=99.62  E-value=6.6e-15  Score=104.82  Aligned_cols=79  Identities=27%  Similarity=0.521  Sum_probs=69.1

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~  158 (261)
                      ++|.|.|+..+|.|+|++++. ..+.+|+.|+++.++|.|.++..++-..+++ ++||++|.|++|.|.++++.|+|.|+
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~-~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~i~i~L~   78 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPV-DISKEDVKVDFTDTSLSVSIKSGDGKEYLLE-GELFGEIDPDESTWKVKDNKIEITLK   78 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTT-TSSGGGEEEEEETTEEEEEEEETTSCEEEEE-EEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred             CCeEEEECCCEEEEEEEEcCC-CCChHHeEEEEEeeEEEEEEEccCCceEEEE-EEEeeeEcchhcEEEEECCEEEEEEE
Confidence            489999999999999999663 3789999999999999999985543556688 99999999999999999999999999


Q ss_pred             e
Q 024881          159 K  159 (261)
Q Consensus       159 K  159 (261)
                      |
T Consensus        79 K   79 (79)
T PF04969_consen   79 K   79 (79)
T ss_dssp             B
T ss_pred             C
Confidence            8

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.53  E-value=4.9e-14  Score=100.46  Aligned_cols=83  Identities=31%  Similarity=0.628  Sum_probs=72.8

Q ss_pred             EcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEecCC
Q 024881           83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDP  162 (261)
Q Consensus        83 wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K~d~  162 (261)
                      |+|+..+|.|+|++|..   ..+|+.|++++++|+|.+++.+.-...++ ++||++|++++|.|.++++.|.|.|.|.++
T Consensus         1 W~Q~~~~v~i~v~~~~~---~~~~~~v~~~~~~l~i~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~   76 (84)
T cd06463           1 WYQTLDEVTITIPLKDV---TKKDVKVEFTPKSLTVSVKGGGGKEYLLE-GELFGPIDPEESKWTVEDRKIEITLKKKEP   76 (84)
T ss_pred             CcccccEEEEEEEcCCC---CccceEEEEecCEEEEEeeCCCCCceEEe-eEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence            89999999999999983   39999999999999999987522233478 889999999999999999999999999998


Q ss_pred             CCCCcccccchhHH
Q 024881          163 ELKWPDIVESWESL  176 (261)
Q Consensus       163 ~m~Wp~~~e~We~l  176 (261)
                       ..|      |++|
T Consensus        77 -~~~------W~~l   83 (84)
T cd06463          77 -GEW------WPRL   83 (84)
T ss_pred             -CCC------Cccc
Confidence             666      7765

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=99.51  E-value=7.2e-14  Score=109.14  Aligned_cols=87  Identities=20%  Similarity=0.352  Sum_probs=76.3

Q ss_pred             ceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC-cceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG-SFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (261)
Q Consensus        80 ~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~-~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~  158 (261)
                      .|.|+|+..+|.|+|+++.  .   +|+.|+++.++|.|.+++.+ .-.-.++ ++||++|+|++|.|.++++.|.|+|+
T Consensus         2 ~~~W~Qt~~~V~i~i~~~~--~---~~~~V~~~~~~l~v~~~~~~~~~~y~~~-~~L~~~I~pe~s~~~v~~~kveI~L~   75 (108)
T cd06465           2 PVLWAQRSDVVYLTIELPD--A---KDPKIKLEPTSLSFKAKGGGGGKKYEFD-LEFYKEIDPEESKYKVTGRQIEFVLR   75 (108)
T ss_pred             ceeeeECCCEEEEEEEeCC--C---CCcEEEEECCEEEEEEEcCCCCeeEEEE-eEhhhhccccccEEEecCCeEEEEEE
Confidence            6999999999999999998  2   99999999999999997642 2223477 89999999999999999999999999


Q ss_pred             ecCCCCCCcccccchhHHHHH
Q 024881          159 KQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       159 K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      |.+. ..|      |++|.+|
T Consensus        76 K~~~-~~~------W~~L~~~   89 (108)
T cd06465          76 KKEA-GEY------WPRLTKE   89 (108)
T ss_pred             ECCC-CCC------CcccccC
Confidence            9995 468      9999775

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>PRK09169 hypothetical protein; Validated

Probab=99.51  E-value=1.8e-14  Score=158.01  Aligned_cols=76  Identities=11%  Similarity=0.053  Sum_probs=72.2

Q ss_pred             HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881          179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE  256 (261)
Q Consensus       179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~  256 (261)
                      ...+.|.+.+|+||||||+||||||+.||..|||.|+|+|..||+.+|++|.+||+.+|  +||++|.++++++..|.
T Consensus      2103 ~~v~rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr~~ 2178 (2316)
T PRK09169       2103 ELVERLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALRWE 2178 (2316)
T ss_pred             HHHHHHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhcCC
Confidence            35578999999999999999999999999999999999999999999999999999999  99999999999998753

>PRK03839 putative kinase; Provisional

Probab=99.49  E-value=1.6e-14  Score=118.80  Aligned_cols=62  Identities=19%  Similarity=0.065  Sum_probs=57.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESL  252 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeel  252 (261)
                      .|+|+|+|||||||+|+.||+++||.|+|+|+++++   ..+.+++.++|+..||.+|..+++.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~   63 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALK---KGIGEEKDDEMEIDFDKLAYFIEEEF   63 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhh---cCCcccCChhhhcCHHHHHHHHHHhc
Confidence            699999999999999999999999999999999976   36889999999999999999998754

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=99.36  E-value=4.1e-12  Score=93.09  Aligned_cols=81  Identities=21%  Similarity=0.376  Sum_probs=70.3

Q ss_pred             EEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEecC
Q 024881           82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD  161 (261)
Q Consensus        82 ~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K~d  161 (261)
                      +|+|+.++|.|.|++|+   ...+|+.|+++.++|.|+++..+.-...++ .+||++|.|++|.|.++++.|.|.|.|.+
T Consensus         1 dW~Qt~~~v~i~v~~~~---~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~vei~L~K~~   76 (84)
T cd06466           1 DWYQTDTSVTVTIYAKN---VDKEDVKVEFNEQSLSVSIILPGGSEYQLE-LDLFGPIDPEQSKVSVLPTKVEITLKKAE   76 (84)
T ss_pred             CccccCCEEEEEEEECC---CCHHHCEEEEecCEEEEEEECCCCCeEEEe-cccccccCchhcEEEEeCeEEEEEEEcCC
Confidence            59999999999999996   668999999999999999886422223477 78999999999999999999999999999


Q ss_pred             CCCCCc
Q 024881          162 PELKWP  167 (261)
Q Consensus       162 ~~m~Wp  167 (261)
                      + +.||
T Consensus        77 ~-~~W~   81 (84)
T cd06466          77 P-GSWP   81 (84)
T ss_pred             C-CCCc
Confidence            8 5554

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.28  E-value=1.6e-11  Score=89.38  Aligned_cols=71  Identities=20%  Similarity=0.309  Sum_probs=63.8

Q ss_pred             EcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEecCC
Q 024881           83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDP  162 (261)
Q Consensus        83 wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K~d~  162 (261)
                      |+|+..+|.|++.+|+   .+.+|+.|++++++|+|..  .+ .  .++ ++||++|+|++|.|.+++..|+|+|.|.++
T Consensus         1 W~Qt~~~v~i~i~~p~---v~~~~v~v~~~~~~l~i~~--~~-~--~~~-~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~   71 (78)
T cd06469           1 WSQTDEDVKISVPLKG---VKTSKVDIFCSDLYLKVNF--PP-Y--LFE-LDLAAPIDDEKSSAKIGNGVLVFTLVKKEP   71 (78)
T ss_pred             CcccCCEEEEEEEeCC---CccccceEEEecCEEEEcC--CC-E--EEE-EeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence            8999999999999997   5789999999999998866  22 3  256 799999999999999999999999999988

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>PRK14532 adenylate kinase; Provisional

Probab=99.22  E-value=1.2e-11  Score=102.21  Aligned_cols=66  Identities=20%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      ++|+|+|+|||||||+|+.||+.+|+.++|+|++|.+.      .|+.+.++++ .|+..++++-.+++.+..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~   72 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERL   72 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999984      6677999988 799999998888777654

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=99.22  E-value=7.4e-11  Score=88.16  Aligned_cols=83  Identities=16%  Similarity=0.344  Sum_probs=70.8

Q ss_pred             EEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEecC
Q 024881           82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD  161 (261)
Q Consensus        82 ~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K~d  161 (261)
                      .|.|+.+.|.|+|.++.   ...+|+.|+++.++|.|.+++...-.-.++ .+||+.|.|++|.|.+.+..|.|.|+|.+
T Consensus         1 dW~Q~~~~V~iti~~k~---~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~-~~L~~~I~p~~s~~~v~~~kiei~L~K~~   76 (84)
T cd06489           1 DWYQTESQVVITILIKN---VKPEDVSVEFEKRELSATVKLPSGNDYSLK-LHLLHPIVPEQSSYKILSTKIEIKLKKTE   76 (84)
T ss_pred             CccccCCEEEEEEEECC---CCHHHCEEEEeCCEEEEEEECCCCCcEEEe-eecCceecchhcEEEEeCcEEEEEEEcCC
Confidence            49999999999999886   567999999999999999976432223477 79999999999999999999999999998


Q ss_pred             CCCCCccc
Q 024881          162 PELKWPDI  169 (261)
Q Consensus       162 ~~m~Wp~~  169 (261)
                      + ..||.+
T Consensus        77 ~-~~W~~L   83 (84)
T cd06489          77 A-IRWSKL   83 (84)
T ss_pred             C-CCCccC
Confidence            7 666543

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>PRK04182 cytidylate kinase; Provisional

Probab=99.18  E-value=6e-11  Score=95.41  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=49.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH---hCCCHHHHHHhhCchhH---HhhHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF---AKQTIDSWMLAEGSDSV---VNGECDVL  249 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~---agkSI~eIFaeeGE~~F---RelEs~VL  249 (261)
                      .|.|+|+|||||||+|+.||++|||+++|+|+++...   .|.++.+++ +.|+..+   +.++..+.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~   68 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFN-KYAEEDPEIDKEIDRRQL   68 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHH-HHhhcCchHHHHHHHHHH
Confidence            6999999999999999999999999999998876654   578888887 4566555   45554443

>PRK14530 adenylate kinase; Provisional

Probab=99.12  E-value=8e-11  Score=100.40  Aligned_cols=70  Identities=14%  Similarity=0.126  Sum_probs=57.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhC---------chhHHhhHHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEG---------SDSVVNGECDVLESLI  253 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeG---------E~~FRelEs~VLeels  253 (261)
                      +.|.+|+|+|++||||||+|+.||+.+||.++|++++|++..+++|++++.+.|         +....+++.++|++..
T Consensus         1 ~~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l   79 (215)
T PRK14530          1 MSQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEAL   79 (215)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            457789999999999999999999999999999999999999888877765544         3344557777776654

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.97  E-value=8.3e-11  Score=98.26  Aligned_cols=67  Identities=12%  Similarity=0.116  Sum_probs=62.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLES  251 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLee  251 (261)
                      +|..|+|+|+||+||||+++.||..++..+++.|..+++...+.+.++|...+++.||.+|...+.+
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFAL   67 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhh
Confidence            4778999999999999999999999999999999999998888899999999999999998887753

>PRK06217 hypothetical protein; Validated

Probab=98.93  E-value=6.1e-10  Score=92.84  Aligned_cols=62  Identities=18%  Similarity=0.103  Sum_probs=46.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~  254 (261)
                      ++|.|+|.|||||||+|+.||+.||++++|+|+++.+..+.+    +..+++..++  +..+++.+..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~   63 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP----FTTKRPPEER--LRLLLEDLRP   63 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC----ccccCCHHHH--HHHHHHHHhc
Confidence            469999999999999999999999999999999998766543    2233444333  4455555543

>PRK13975 thymidylate kinase; Provisional

Probab=98.93  E-value=7.9e-10  Score=91.29  Aligned_cols=65  Identities=22%  Similarity=0.146  Sum_probs=54.5

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcC--CCccCcHHHHHHH----------hCCCHHHHHHhhCchhHHhhHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETF----------AKQTIDSWMLAEGSDSVVNGECDVLE  250 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDTDeLIEq~----------agkSI~eIFaeeGE~~FRelEs~VLe  250 (261)
                      |+-|++.|++|+||||+++.||++|+  +.+.++|..+.+.          .++++..+|+.+|++.||++|.....
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~   78 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK   78 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999  6777777555542          55678889999999999999876543

>PRK01184 hypothetical protein; Provisional

Probab=98.80  E-value=4.7e-09  Score=86.58  Aligned_cols=58  Identities=12%  Similarity=0.066  Sum_probs=45.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh-CCCHHHHHHhhCchhHHhhHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGEC  246 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a-gkSI~eIFaeeGE~~FRelEs  246 (261)
                      .|.|+|+|||||||+++ +|+.+||.++|+++++.+.. +..++.++++.|+..++..|.
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~   61 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE   61 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence            58999999999999998 78999999999988887664 344555666667766665543

>PLN02674 adenylate kinase

Probab=98.77  E-value=1.8e-08  Score=91.01  Aligned_cols=71  Identities=10%  Similarity=0.039  Sum_probs=64.0

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHhcc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLIMF  255 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels~~  255 (261)
                      ....+|+|+|++||||+|+|+.||+.+|+.++++.++|.+.      .|+.|.+++. +|+-.+.++...++.+....
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~~  105 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKK  105 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHhC
Confidence            33578999999999999999999999999999999999887      7888999986 99999999999998887643

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=98.76  E-value=7.7e-08  Score=73.26  Aligned_cols=84  Identities=15%  Similarity=0.279  Sum_probs=69.1

Q ss_pred             ceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEe
Q 024881           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK  159 (261)
Q Consensus        80 ~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K  159 (261)
                      +|.|.|+.+.|-|.|-+..   ...+++.|+++.++|.|.++-.+.-.-.++ -+||++|.|++|.|.+....|.|.|+|
T Consensus         2 R~dW~Qs~~~V~ItI~~k~---~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~-l~L~~~I~~~~s~~~v~~~kvei~L~K   77 (87)
T cd06488           2 RHDWHQTGSHVVVSVYAKN---SNPELSVVEANSTVLTIHIVFEGNKEFQLD-IELWGVIDVEKSSVNMLPTKVEIKLRK   77 (87)
T ss_pred             CccEeeCCCEEEEEEEECc---CCccceEEEecCCEEEEEEECCCCceEEEE-eeccceEChhHcEEEecCcEEEEEEEe
Confidence            6999999999999998864   567899999999999886643322122466 489999999999999999999999999


Q ss_pred             cCCCCCCcc
Q 024881          160 QDPELKWPD  168 (261)
Q Consensus       160 ~d~~m~Wp~  168 (261)
                      .++ ..||.
T Consensus        78 ~~~-~~W~~   85 (87)
T cd06488          78 AEP-GSWAK   85 (87)
T ss_pred             CCC-CcCcc
Confidence            998 46654

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.73  E-value=4.8e-08  Score=78.23  Aligned_cols=45  Identities=20%  Similarity=0.210  Sum_probs=38.8

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSW  232 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eI  232 (261)
                      -|.+.|++||||||+|+.||+.|||+++|.|+++...+   |.++.++
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~   49 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEF   49 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHH
Confidence            48999999999999999999999999999998877665   4555553

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.72  E-value=7.9e-09  Score=83.52  Aligned_cols=64  Identities=16%  Similarity=0.069  Sum_probs=49.2

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH-----H-hCCCHHHHHHhhCchhHHhhHHHHHHHHhcc
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET-----F-AKQTIDSWMLAEGSDSVVNGECDVLESLIMF  255 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq-----~-agkSI~eIFaeeGE~~FRelEs~VLeels~~  255 (261)
                      |+|+|.+||||||+++.||+.||+.++|.|++...     . .|....   ..++++.|+.++..+...+...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~   70 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLN---DDDRWPWLQNLNDASTAAAAKN   70 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCC---hhhHHHHHHHHHHHHHHHHhcC
Confidence            57999999999999999999999999999998432     2 244333   3566778888877777665544

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.72  E-value=1.7e-08  Score=82.60  Aligned_cols=65  Identities=20%  Similarity=0.319  Sum_probs=53.0

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLeels~  254 (261)
                      |+++|++||||||+|+.||+.+|+..+++++++.+..      |+.+.+.+ +.|+....++..++|.+...
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~   72 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQ   72 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHh
Confidence            7899999999999999999999999999988886543      23355654 68888888888888876543

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.71  E-value=1.5e-08  Score=82.92  Aligned_cols=63  Identities=21%  Similarity=0.190  Sum_probs=47.4

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES  251 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLee  251 (261)
                      +|+|+|++||||||+++.||+.+|+.++++|+++.+..      |+.+.+.+. +|+....++...++.+
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~l~~~   69 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYID-SGKLVPDEIVIKLLKE   69 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHH-cCCccCHHHHHHHHHH
Confidence            48999999999999999999999999999999997763      334555543 3555555554444443

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.69  E-value=2.6e-08  Score=88.36  Aligned_cols=69  Identities=17%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC------CHHHHHHhhCc----hhHHhhHHHHHHH
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGS----DSVVNGECDVLES  251 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk------SI~eIFaeeGE----~~FRelEs~VLee  251 (261)
                      ++..+++|+|+|+|||||||+|+.||+.+|+.+++++++|.+..+.      .+.++ .+.|.    +.+.++-.+-|.+
T Consensus         2 ~~~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~-~~~G~lvpd~iv~~lv~~~l~~   80 (229)
T PTZ00088          2 KLKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKV-VTSGNLVPDNLVIAIVKDEIAK   80 (229)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHH-HHcCCcCCHHHHHHHHHHHHHh
Confidence            4566788999999999999999999999999999999999876433      45555 34453    4444444444444

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.69  E-value=1.3e-08  Score=77.78  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=31.7

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI  221 (261)
                      |+++|.+||||||+++.||+.+|+.+++.|+++
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~   34 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGFPVISMDDLI   34 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence            789999999999999999999999999999965

...

>PLN02165 adenylate isopentenyltransferase

Probab=98.69  E-value=2.6e-08  Score=94.06  Aligned_cols=76  Identities=8%  Similarity=0.140  Sum_probs=68.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH--------------HHHHhCCC---HHHHHHhhCc---hhH
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT---IDSWMLAEGS---DSV  241 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL--------------IEq~agkS---I~eIFaeeGE---~~F  241 (261)
                      .--+|..|+|+|++|||||+++..||+.+|+.++|.|.+              .+...|..   ++.++.++|+   ..|
T Consensus        39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F  118 (334)
T PLN02165         39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEF  118 (334)
T ss_pred             cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHH
Confidence            455677899999999999999999999999999999999              88889988   9999888888   899


Q ss_pred             HhhHHHHHHHHhcccC
Q 024881          242 VNGECDVLESLIMFEP  257 (261)
Q Consensus       242 RelEs~VLeels~~~~  257 (261)
                      ++.+.++++++.+..+
T Consensus       119 ~~~a~~~I~~i~~~~~  134 (334)
T PLN02165        119 RSLASLSISEITSRQK  134 (334)
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            9999999999876554

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=98.68  E-value=1.1e-07  Score=65.47  Aligned_cols=71  Identities=23%  Similarity=0.355  Sum_probs=62.7

Q ss_pred             EcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccC---------CcceeeeecccccCCCCCCceeeEEecCeE
Q 024881           83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS---------GSFITLIETNQLFDKIKPTETIWYIDEDQL  153 (261)
Q Consensus        83 wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~---------~~~~tlId~g~L~~kIk~~Et~W~IdD~~l  153 (261)
                      |.|+.+.+.++|++|+   ...+++.|+++.++|.|..+..         ..+  ..+ -+|+..|.++++.|.++++.|
T Consensus         1 ~~q~~~~v~i~i~~~~---~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~--~~~-~~L~~~i~~~~~~~~~~~~~l   74 (80)
T cd00298           1 WYQTDDEVVVTVDLPG---VKKEDIKVEVEDNVLTISGKREEEEERERSYGEF--ERS-FELPEDVDPEKSKASLENGVL   74 (80)
T ss_pred             CEEcCCEEEEEEECCC---CCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeE--EEE-EECCCCcCHHHCEEEEECCEE
Confidence            7899999999999999   4599999999999999999875         233  245 669999999999999999999


Q ss_pred             EEEEEe
Q 024881          154 VINLKK  159 (261)
Q Consensus       154 vv~L~K  159 (261)
                      .|.|.|
T Consensus        75 ~i~l~K   80 (80)
T cd00298          75 EITLPK   80 (80)
T ss_pred             EEEEcC
Confidence            999987

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.68  E-value=1.8e-08  Score=80.24  Aligned_cols=62  Identities=19%  Similarity=0.116  Sum_probs=48.4

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH------HhCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq------~agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      |+|+|.+||||||+|+.||+.+|..++|.|.+++.      ..|...+   ..++++.++++.....+.+.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~   69 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLN---DEDRWPWLQALTDALLAKLA   69 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCC---ccchhhHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999874      3333222   23467788888766666553

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.64  E-value=2.7e-08  Score=93.77  Aligned_cols=57  Identities=18%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCC------ccCcHHHH-----HHHhCCCHHHHHHhhCchhHHhhHHHHHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYT------PLSTKELL-----ETFAKQTIDSWMLAEGSDSVVNGECDVLE  250 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~------fvDTDeLI-----Eq~agkSI~eIFaeeGE~~FRelEs~VLe  250 (261)
                      ++|+|.||+||||+|+.||.+|+..      ++|.|++|     |..+|++|++||     ..||+.=.+.|+
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~-----k~~R~~i~~~le   69 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQW-----KQFRQELLKYLE   69 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHH-----HHHHHHHHHHHH
Confidence            5799999999999999999998865      99999999     999999999999     788854333333

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.62  E-value=1e-08  Score=102.39  Aligned_cols=69  Identities=9%  Similarity=0.122  Sum_probs=64.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHH-HHHHhhCchhHHhhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID-SWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~-eIFaeeGE~~FRelEs~VLeels~  254 (261)
                      ...|.+||+||+||||||+.||+.|+|.++|+|.+++...++.+. ++|...|+..||++|.+++.+++.
T Consensus       215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~  284 (664)
T PTZ00322        215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAH  284 (664)
T ss_pred             ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHH
Confidence            346999999999999999999999999999999999999999998 789999999999999999988874

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.61  E-value=6.7e-08  Score=91.59  Aligned_cols=51  Identities=25%  Similarity=0.254  Sum_probs=46.0

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC---CHHHHHHhhCch
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSD  239 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk---SI~eIFaeeGE~  239 (261)
                      .|.|+|++|||||||++.||+ +|+.++|+|+++.++...   .+.+|+..-|++
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~   56 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDD   56 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChH
Confidence            599999999999999999998 899999999999997654   467888888888

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.59  E-value=4.3e-08  Score=83.43  Aligned_cols=54  Identities=19%  Similarity=0.156  Sum_probs=46.9

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV  242 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~FR  242 (261)
                      .|.|+|.+||||||+++.|++ +||.++|+|++..+..   +..+.+|++.-|++.|.
T Consensus         4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~   60 (194)
T PRK00081          4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILD   60 (194)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcC
Confidence            599999999999999999999 9999999999999885   34567777777877764

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.58  E-value=7.5e-08  Score=84.65  Aligned_cols=55  Identities=15%  Similarity=0.122  Sum_probs=49.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC--CHHHHHHhhCchhH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--TIDSWMLAEGSDSV  241 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk--SI~eIFaeeGE~~F  241 (261)
                      ..|.|+|.+|||||||++.|++.||+.++|+|.+..+..+.  .+.+|++.-|++.+
T Consensus         7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~   63 (204)
T PRK14733          7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIV   63 (204)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhc
Confidence            36999999999999999999999999999999999999765  36789999998876

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.57  E-value=7.2e-08  Score=79.23  Aligned_cols=54  Identities=22%  Similarity=0.158  Sum_probs=44.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECD  247 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~  247 (261)
                      +|..|.|+|+|||||||+++.|++.|+     ..++|.|.+         .++|...|.+.+++.|..
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~---------r~~~~~~~~~~~~~~~~~   64 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL---------REILGHYGYDKQSRIEMA   64 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH---------HhhcCCCCCCHHHHHHHH
Confidence            678899999999999999999999996     678887775         456666777777776654

>PRK00279 adk adenylate kinase; Reviewed

Probab=98.54  E-value=9e-08  Score=81.75  Aligned_cols=65  Identities=17%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESL  252 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeel  252 (261)
                      +.|+++|++||||||+++.||+.+|+..+++++++.+.      .|+.+.+++. +|+....++..+++.+.
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~   71 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKER   71 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHH
Confidence            36999999999999999999999999999999999765      3345666644 56666666666655543

>PRK02496 adk adenylate kinase; Provisional

Probab=98.54  E-value=1.3e-07  Score=78.20  Aligned_cols=66  Identities=17%  Similarity=0.184  Sum_probs=50.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      +.|+++|.+||||||+++.||+.+|+..+++++++.+..      |.-+.++ ..+|+....++...++.+-.
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~-~~~g~~~~~~~~~~~l~~~l   73 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGY-MDKGELVPDQLVLDLVQERL   73 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHH-HHCCCccCHHHHHHHHHHHH
Confidence            469999999999999999999999999999999987653      2223333 35677777777777665543

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.52  E-value=9.1e-08  Score=74.45  Aligned_cols=65  Identities=18%  Similarity=0.041  Sum_probs=42.5

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE  256 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~  256 (261)
                      |.++|.+||||||+|+.||+.+|++++|.|.+-+...+.-...+.   ....+++.-.+.+++++...
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~---~~~~i~~~l~~~~~~~~~~~   66 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVA---AIPEVRKALDERQRELAKKP   66 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhc---ccHhHHHHHHHHHHHHhhCC
Confidence            789999999999999999999999999999443322111111110   11345555556666665443

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.51  E-value=1.2e-07  Score=83.62  Aligned_cols=67  Identities=15%  Similarity=0.042  Sum_probs=50.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc-CCCccCcHHHHHHHhCCCHH--HHHHhhCchhHHhhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTID--SWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLIEq~agkSI~--eIFaeeGE~~FRelEs~VLeels  253 (261)
                      .-|+|+|.+||||||+|+.||+++ |+.++|+|++.+...+....  ..+..++++.++++..+.+.+..
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   72 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAAL   72 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHH
Confidence            358899999999999999999999 99999999998887654321  12344556666767666666554

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=98.50  E-value=1e-06  Score=70.62  Aligned_cols=87  Identities=20%  Similarity=0.256  Sum_probs=72.7

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEcc-CCcceeeeecccccCCCCCCceeeEEecCeEEEEE
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR-SGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL  157 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~-~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L  157 (261)
                      +.+.|.|+...|-|.|.++.     .+|+.|+++.++|.+..++ +|.- -.++ -+||+.|.|++|...+-+..|.+.|
T Consensus         2 p~v~WaQr~~~V~ltI~v~d-----~~d~~v~l~~~~l~f~~~~~~g~~-y~~~-l~l~~~I~pe~Sk~~v~~r~ve~~L   74 (106)
T cd00237           2 AKTLWYDRRDYVFIEFCVED-----SKDVKVDFEKSKLTFSCLNGDNVK-IYNE-IELYDRVDPNDSKHKRTDRSILCCL   74 (106)
T ss_pred             CcceeeECCCEEEEEEEeCC-----CCCcEEEEecCEEEEEEECCCCcE-EEEE-EEeecccCcccCeEEeCCceEEEEE
Confidence            35789999999999998887     5899999999999998865 3322 2244 6899999999999999999999999


Q ss_pred             EecCCCCCCcccccchhHHHHH
Q 024881          158 KKQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      +|.+. -.|      |+.|++.
T Consensus        75 ~K~~~-~~~------WprL~k~   89 (106)
T cd00237          75 RKGKE-GVA------WPRLTKE   89 (106)
T ss_pred             EeCCC-CCC------CchhhcC
Confidence            99986 457      8888874

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.50  E-value=9.1e-08  Score=95.00  Aligned_cols=69  Identities=17%  Similarity=0.098  Sum_probs=51.9

Q ss_pred             chhHHHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhcCC------CccCcHHHHHHHhCCCHHHHHHhhCchhHHhh
Q 024881          172 SWESLTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLGY------TPLSTKELLETFAKQTIDSWMLAEGSDSVVNG  244 (261)
Q Consensus       172 ~We~l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY------~fvDTDeLIEq~agkSI~eIFaeeGE~~FRel  244 (261)
                      -|+-|...-. ..-+|..|+|+|+|||||||+|+.||++|+.      .++|.|.+-...           .||.+|++.
T Consensus       377 V~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l-----------~ge~~f~~~  445 (568)
T PRK05537        377 VVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHL-----------SSELGFSKE  445 (568)
T ss_pred             HHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhc-----------cCCCCCCHH
Confidence            3444444333 3346778999999999999999999999997      999999774333           267889998


Q ss_pred             HHHHHHH
Q 024881          245 ECDVLES  251 (261)
Q Consensus       245 Es~VLee  251 (261)
                      |.+...+
T Consensus       446 er~~~~~  452 (568)
T PRK05537        446 DRDLNIL  452 (568)
T ss_pred             HHHHHHH
Confidence            8875444

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.49  E-value=1e-07  Score=74.27  Aligned_cols=38  Identities=29%  Similarity=0.337  Sum_probs=36.6

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag  226 (261)
                      |+++|++||||||+++.||+.+|+.++|.|++..++.+
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~   39 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG   39 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc
Confidence            78999999999999999999999999999999998887

...

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.48  E-value=2e-07  Score=75.74  Aligned_cols=48  Identities=25%  Similarity=0.339  Sum_probs=39.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWML  234 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFa  234 (261)
                      .-|.++|.+||||||+++.||+.+|+.++++++++-+.      .++.+.+++.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   57 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIME   57 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            35899999999999999999999999999999887554      2344555554

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.47  E-value=2.2e-07  Score=81.07  Aligned_cols=62  Identities=18%  Similarity=0.149  Sum_probs=49.2

Q ss_pred             EEEEecCCCchhHHHHHHHHhc---C--CCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE  256 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L---g--Y~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~  256 (261)
                      |+|+|.|||||||+|+.||+.|   |  +..+|.|.+-+...      .+.+.+|+.+|+.+.+++++.....
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~------~~~~~~e~~~~~~~~~~i~~~l~~~   68 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP------VWKEKYEEFIRDSTLYLIKTALKNK   68 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH------HhhHHhHHHHHHHHHHHHHHHHhCC
Confidence            7899999999999999999988   3  45778888876542      2345788999999888888776543

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.46  E-value=1.7e-07  Score=78.39  Aligned_cols=51  Identities=22%  Similarity=0.215  Sum_probs=43.0

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC---CCHHHHHHhhCchh
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK---QTIDSWMLAEGSDS  240 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag---kSI~eIFaeeGE~~  240 (261)
                      |.|+|++||||||+++.|++ +||..+|+|++..+...   ....+|+..-|++.
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~   55 (179)
T cd02022           2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDI   55 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcce
Confidence            78999999999999999999 99999999999988765   34466666666654

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK06547 hypothetical protein; Provisional

Probab=98.45  E-value=1.6e-07  Score=79.78  Aligned_cols=55  Identities=18%  Similarity=0.245  Sum_probs=45.1

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC-----HHHHHHhhCchhHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT-----IDSWMLAEGSDSVVN  243 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS-----I~eIFaeeGE~~FRe  243 (261)
                      |.+.|.+||||||+++.||+.+|+.+++.|.+.....+.+     +.++|.++|+..++.
T Consensus        18 i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~   77 (172)
T PRK06547         18 VLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWR   77 (172)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceec
Confidence            5555999999999999999999999999999987655544     667777788776643

>PRK08118 topology modulation protein; Reviewed

Probab=98.44  E-value=2.5e-07  Score=77.49  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=34.1

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq  223 (261)
                      .|+++|++||||||+|+.||+.+|+++++.|+++.+
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~   38 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK   38 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence            699999999999999999999999999999999854

>TIGR00152 dephospho-CoA kinase

Probab=98.42  E-value=2.7e-07  Score=77.20  Aligned_cols=39  Identities=18%  Similarity=0.170  Sum_probs=35.7

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ  227 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk  227 (261)
                      |.|+|.+|||||||++.|++..||.++|+|++..+....
T Consensus         2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~   40 (188)
T TIGR00152         2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEK   40 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhc
Confidence            789999999999999999999889999999998776643

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.42  E-value=1.7e-07  Score=91.64  Aligned_cols=62  Identities=13%  Similarity=0.125  Sum_probs=56.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcH--HHHH-HHhCCCHHHHHHhhCchhHHhhHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLE-TFAKQTIDSWMLAEGSDSVVNGEC  246 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD--eLIE-q~agkSI~eIFaeeGE~~FRelEs  246 (261)
                      ...+|.|+|++|+|||++++.||+.+|.+|++.|  +++| ...|+.+++++...++++||..+.
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~  110 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKE  110 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999  6777 689999999999999999885543

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.34  E-value=6.4e-07  Score=76.94  Aligned_cols=39  Identities=21%  Similarity=0.067  Sum_probs=36.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag  226 (261)
                      .|.|+|++||||||+++.|++.+|+.++|+|++..+...
T Consensus         3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~   41 (195)
T PRK14730          3 RIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALA   41 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHh
Confidence            589999999999999999999999999999999888753

>PRK14531 adenylate kinase; Provisional

Probab=98.33  E-value=7e-07  Score=74.74  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=34.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~  224 (261)
                      +|+++|++||||||+++.||+.+|+.+++++++|.+.
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~   40 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE   40 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence            6999999999999999999999999999998888654

>PRK14526 adenylate kinase; Provisional

Probab=98.27  E-value=1.4e-06  Score=76.31  Aligned_cols=62  Identities=16%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVL  249 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VL  249 (261)
                      ++|+|+|++||||||+++.||+.+|+.++++++++.+.      .|+.+.+++ +.|+-.--++-.+++
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~-~~g~lvpd~~~~~lv   68 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIV-ENGQLVPDSITIKIV   68 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHH-HcCccCChHHHHHHH
Confidence            36999999999999999999999999999999998763      446688886 456544333333333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.24  E-value=6.7e-06  Score=76.43  Aligned_cols=83  Identities=22%  Similarity=0.376  Sum_probs=70.4

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~  158 (261)
                      .+|.|.|+.+.|-|.|-+.+   ....++.|+++.++|.|.+...+.-.-.++ .+||++|.|++|...+--..|.|.|+
T Consensus       157 ~r~dWyQs~~~V~i~i~~k~---~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~-~~L~~~I~p~~s~~~v~~~Kiei~l~  232 (356)
T PLN03088        157 YRHEFYQKPEEVVVTVFAKG---VPAENVNVDFGEQILSVVIEVPGEDAYHLQ-PRLFGKIIPDKCKYEVLSTKIEIRLA  232 (356)
T ss_pred             cccceeecCCEEEEEEEecC---CChHHcEEEeecCEEEEEEecCCCcceeec-ccccccccccccEEEEecceEEEEEe
Confidence            58999999999999998886   567899999999999998864332112355 69999999999999999999999999


Q ss_pred             ecCCCCCC
Q 024881          159 KQDPELKW  166 (261)
Q Consensus       159 K~d~~m~W  166 (261)
                      |.++ .+|
T Consensus       233 K~~~-~~W  239 (356)
T PLN03088        233 KAEP-ITW  239 (356)
T ss_pred             cCCC-CCc
Confidence            9998 666

>TIGR01351 adk adenylate kinases

Probab=98.19  E-value=2.4e-06  Score=72.78  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=34.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~  224 (261)
                      +|+++|++||||||+++.||+.+|+..+++++|+-+.
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~   37 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAE   37 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHh
Confidence            4899999999999999999999999999999998664

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.17  E-value=2e-06  Score=71.22  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=35.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~a  225 (261)
                      +|.-|+|+|++||||||+++.|++.++..++  +.|.+++..-
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~   43 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALP   43 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcC
Confidence            4778999999999999999999999987765  8998887643

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.12  E-value=2.8e-06  Score=74.59  Aligned_cols=38  Identities=29%  Similarity=0.288  Sum_probs=34.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE  222 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE  222 (261)
                      +.+.|.++|++||||||+|+.||+.|||.++|++.+.-
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r   40 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYR   40 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHH
Confidence            45689999999999999999999999999999999843

>PRK14527 adenylate kinase; Provisional

Probab=98.12  E-value=5e-06  Score=69.72  Aligned_cols=40  Identities=28%  Similarity=0.357  Sum_probs=36.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~  224 (261)
                      +|.-|.++|.+||||||+++.||+.+|+..+++++++-+.
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~   44 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDH   44 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            5677999999999999999999999999999999998553

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.11  E-value=2.1e-06  Score=70.60  Aligned_cols=41  Identities=22%  Similarity=0.343  Sum_probs=35.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---C--CCccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---g--Y~fvDTDeLIEq~a  225 (261)
                      +|..|.|+|.||+||||+++.||..|   |  ..++|.|.+.+...
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~   48 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS   48 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh
Confidence            57789999999999999999999998   3  67899998876654

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.09  E-value=2.1e-06  Score=85.98  Aligned_cols=58  Identities=24%  Similarity=0.297  Sum_probs=46.8

Q ss_pred             CCcccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881          165 KWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (261)
Q Consensus       165 ~Wp~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~  224 (261)
                      -||+..|.|+.|...=.  =+...|.+.|+.||||||+|+.||++|||.++|++.+--..
T Consensus       423 syP~F~~~l~~Lg~~~~--~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        423 TFPDYFEALFSVAQADA--DRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             CCCChHHHHHHhcCCcc--cCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            57777777777653321  12447999999999999999999999999999999987766

>PRK07261 topology modulation protein; Provisional

Probab=98.07  E-value=1.9e-06  Score=72.25  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=32.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI  221 (261)
                      +.|.++|++||||||+++.||+.+|++.++.|.+-
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~   35 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH   35 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence            36999999999999999999999999999998764

>PRK14529 adenylate kinase; Provisional

Probab=98.05  E-value=5.8e-06  Score=73.81  Aligned_cols=65  Identities=5%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESL  252 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLeel  252 (261)
                      ++|+|+|++||||+|+++.||+.+|+.++++-+++.+..      |+.+.++. +.|+-.--++-.+++.+-
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~   71 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILET   71 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHH
Confidence            379999999999999999999999999999999987643      34566664 567766666655555443

>PLN02200 adenylate kinase family protein

Probab=98.05  E-value=4.5e-06  Score=73.96  Aligned_cols=39  Identities=18%  Similarity=0.293  Sum_probs=35.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq  223 (261)
                      +...|+++|++||||||+++.||+.+|+..+++++++.+
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~   80 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRR   80 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHH
Confidence            346799999999999999999999999999999888854

>PRK13808 adenylate kinase; Provisional

Probab=98.05  E-value=7.4e-06  Score=77.50  Aligned_cols=49  Identities=20%  Similarity=0.231  Sum_probs=42.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLA  235 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFae  235 (261)
                      ++|+|+|++||||+|+++.||+.+|+.++|++++|...      .|..+.+++..
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~   55 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS   55 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc
Confidence            47999999999999999999999999999999999764      56667777643

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.04  E-value=2.6e-06  Score=75.46  Aligned_cols=40  Identities=23%  Similarity=0.313  Sum_probs=35.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH-----HHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL-----LETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL-----IEq~a  225 (261)
                      +++ ||+.|.+|+||||||++|++.||+.|+|.|++     +|+..
T Consensus        12 k~~-i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~   56 (191)
T KOG3354|consen   12 KYV-IVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMT   56 (191)
T ss_pred             cee-EEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHh
Confidence            444 99999999999999999999999999999987     55554

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.04  E-value=3.8e-06  Score=67.65  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=33.4

Q ss_pred             EEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          191 LVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       191 LVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      |+|++||||+|+++.||+.+|+..|+..+++++..
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~   35 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEI   35 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHH
Confidence            68999999999999999999999999999999875

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK14528 adenylate kinase; Provisional

Probab=98.03  E-value=1.2e-05  Score=68.18  Aligned_cols=39  Identities=21%  Similarity=0.232  Sum_probs=36.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      .+|.+.|++||||||+++.||+.+||..+++++++.+..
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~   40 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV   40 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh
Confidence            479999999999999999999999999999999997643

>PRK04040 adenylate kinase; Provisional

Probab=98.03  E-value=8.2e-06  Score=70.04  Aligned_cols=40  Identities=13%  Similarity=0.085  Sum_probs=35.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc--CCCccCcHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFA  225 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L--gY~fvDTDeLIEq~a  225 (261)
                      .+.|+++|++|+||||+++.|++.|  ||.+++.++++-..+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a   43 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVA   43 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHH
Confidence            3579999999999999999999999  999999999864443

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.02  E-value=4.5e-06  Score=71.68  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=36.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ  227 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk  227 (261)
                      ++|.++|.+||||||.|+.||+.+|++.+||+++.......
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~   41 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAE   41 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhcc
Confidence            47999999999999999999999999999999988665433

>PRK06762 hypothetical protein; Provisional

Probab=98.01  E-value=6.1e-06  Score=66.94  Aligned_cols=40  Identities=23%  Similarity=0.225  Sum_probs=34.2

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc--CCCccCcHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFA  225 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L--gY~fvDTDeLIEq~a  225 (261)
                      ++-|.|+|++||||||+++.|++++  |+.++|.|++-....
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~   43 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDML   43 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhc
Confidence            4558999999999999999999999  566789999876554

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.00  E-value=1.1e-05  Score=69.53  Aligned_cols=53  Identities=19%  Similarity=0.193  Sum_probs=41.0

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSV  241 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~F  241 (261)
                      -|.|+|.+|||||||++.|+. +||.++|+|++.-+..   +..+.+|...-|+..+
T Consensus         3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~   58 (200)
T PRK14734          3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDIL   58 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCcccc
Confidence            388999999999999999998 8999999998654443   2345666666666433

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.00  E-value=6.8e-06  Score=80.67  Aligned_cols=68  Identities=16%  Similarity=0.214  Sum_probs=58.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcH--HHHH-HHhCCCHHHHHHhhCchhHH----------------hhHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLE-TFAKQTIDSWMLAEGSDSVV----------------NGEC  246 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD--eLIE-q~agkSI~eIFaeeGE~~FR----------------elEs  246 (261)
                      +.+|.|+|++|+|||++++.||+.+|.+|+..|  ++.| .+.|+...+++...++++|+                ++|.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~  129 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEE  129 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999998887  4777 58899999999999999984                4466


Q ss_pred             HHHHHHh
Q 024881          247 DVLESLI  253 (261)
Q Consensus       247 ~VLeels  253 (261)
                      .++.+|.
T Consensus       130 ri~~~l~  136 (443)
T PRK05201        130 RILDALL  136 (443)
T ss_pred             HHHHHhC
Confidence            6666664

>PLN02459 probable adenylate kinase

Probab=97.97  E-value=6.8e-06  Score=75.46  Aligned_cols=51  Identities=16%  Similarity=0.177  Sum_probs=41.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGS  238 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE  238 (261)
                      ++|+|+|++|+||+|+++.||+.+|+.++++.++|.+.      .|+-|.++. +.|+
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~-~~G~   86 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIV-NQGK   86 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHH-HcCC
Confidence            68999999999999999999999999999999999664      334455553 4454

>TIGR00017 cmk cytidylate kinase

Probab=97.96  E-value=4.3e-06  Score=73.47  Aligned_cols=38  Identities=26%  Similarity=0.304  Sum_probs=34.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~  224 (261)
                      ..|.+.|++|+||||+++.||++||+.++|++.+.-.+
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            36999999999999999999999999999999886544

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.96  E-value=1e-05  Score=69.68  Aligned_cols=53  Identities=19%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC---HHHHHHhhCchhH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT---IDSWMLAEGSDSV  241 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS---I~eIFaeeGE~~F  241 (261)
                      -|-|+|.+|||||||++.|++ +||+.+|+|++.-++...-   ...|...=|++.|
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il   57 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEIL   57 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGB
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCcccc
Confidence            378999999999999999999 9999999999998887532   2344444444443

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.95  E-value=3e-06  Score=64.19  Aligned_cols=33  Identities=30%  Similarity=0.387  Sum_probs=30.1

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCc--cCcHHHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTP--LSTKELL  221 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~f--vDTDeLI  221 (261)
                      |+|+|.+|+|||++++.||+.+|+++  +|..++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~   35 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI   35 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence            68999999999999999999999887  6777777

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.94  E-value=3.5e-06  Score=63.64  Aligned_cols=22  Identities=32%  Similarity=0.228  Sum_probs=21.5

Q ss_pred             EEEEecCCCchhHHHHHHHHhc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |+|.|.+|+|||||++.|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999

...

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=97.93  E-value=1.3e-05  Score=72.37  Aligned_cols=39  Identities=13%  Similarity=0.022  Sum_probs=36.0

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag  226 (261)
                      -|-|.|.+|||||||++.|++.+|++.+|+|++.-++..
T Consensus         3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~   41 (244)
T PTZ00451          3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQA   41 (244)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHc
Confidence            388999999999999999999999999999999887755

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.91  E-value=8.8e-06  Score=68.68  Aligned_cols=38  Identities=29%  Similarity=0.346  Sum_probs=30.0

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ  227 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk  227 (261)
                      |.+-|..|||+++||+.||++|||+++|- ++|++++++
T Consensus         2 ITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~   39 (179)
T PF13189_consen    2 ITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKE   39 (179)
T ss_dssp             EEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT--
T ss_pred             EEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHH
Confidence            67889999999999999999999999999 888888877

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.86  E-value=9.5e-06  Score=68.72  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=34.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL  220 (261)
                      +.|..+.|+|.+|+||||+++.||..++..++|.|.+
T Consensus         1 ~~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~   37 (176)
T PRK09825          1 MAGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL   37 (176)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence            4688899999999999999999999999999999986

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.85  E-value=1.4e-05  Score=70.32  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=34.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      -|-|+|+.|||||||++.+++ +||+.+|.|+++-++.
T Consensus         4 iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~   40 (201)
T COG0237           4 IIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVV   40 (201)
T ss_pred             EEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHH
Confidence            488999999999999999999 9999999999988654

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=7.9e-06  Score=71.20  Aligned_cols=33  Identities=27%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             ecCCCchhHHHHHHHHhcCCCccCcHHH-----HHHHh
Q 024881          193 GDSTEVNEKVALELAVGLGYTPLSTKEL-----LETFA  225 (261)
Q Consensus       193 GmmGsGKSTVGr~LA~~LgY~fvDTDeL-----IEq~a  225 (261)
                      |-.|+||||||+.||++||+.|+|.|+|     |+++.
T Consensus         2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~   39 (161)
T COG3265           2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMS   39 (161)
T ss_pred             CCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHh
Confidence            7789999999999999999999999987     56553

>PLN02422 dephospho-CoA kinase

Probab=97.80  E-value=2.9e-05  Score=69.89  Aligned_cols=53  Identities=15%  Similarity=0.138  Sum_probs=43.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC---HHHHHHhhCchhH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT---IDSWMLAEGSDSV  241 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS---I~eIFaeeGE~~F  241 (261)
                      .|.|+|.+|||||||++.|+ .+|+.++|+|++..+.....   ..+|.+.-|++.+
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il   58 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDIL   58 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhc
Confidence            48999999999999999999 68999999999987775432   4566666666665

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.75  E-value=2.8e-05  Score=70.62  Aligned_cols=39  Identities=28%  Similarity=0.275  Sum_probs=34.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      ..|-+=|+.|||||||++.||++|||.++||-.+--.+|
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a   43 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVA   43 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHH
Confidence            578999999999999999999999999999977655444

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.74  E-value=1.2e-05  Score=66.93  Aligned_cols=29  Identities=31%  Similarity=0.158  Sum_probs=27.7

Q ss_pred             EecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881          192 VGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (261)
Q Consensus       192 VGmmGsGKSTVGr~LA~~LgY~fvDTDeL  220 (261)
                      +|.+|+||||+++.||.+||..++|.|.+
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~   29 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL   29 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence            59999999999999999999999999976

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.73  E-value=1.7e-05  Score=80.16  Aligned_cols=39  Identities=26%  Similarity=0.262  Sum_probs=35.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      ..|.|.|.+|+|||||++.||++|||.|+||.++....+
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~   40 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACA   40 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHH
Confidence            379999999999999999999999999999988776644

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.73  E-value=1.9e-05  Score=64.83  Aligned_cols=27  Identities=22%  Similarity=0.219  Sum_probs=23.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      |.-|.|+|+|||||||+++.||..++.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            456899999999999999999998863

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.69  E-value=6.1e-05  Score=62.91  Aligned_cols=53  Identities=23%  Similarity=0.345  Sum_probs=40.4

Q ss_pred             chhHHHHHHHhhcC-CceEEEEecCCCchhHHHHHHHHhcCCC-cc--CcHHHHHHH
Q 024881          172 SWESLTAGSMQLLK-GTSIFLVGDSTEVNEKVALELAVGLGYT-PL--STKELLETF  224 (261)
Q Consensus       172 ~We~l~~g~~~lLk-G~sIyLVGmmGsGKSTVGr~LA~~LgY~-fv--DTDeLIEq~  224 (261)
                      ....+.+-+.+.|+ |..|+|.|++|+||||+.|.+|+.||+. .+  -|-.++..+
T Consensus         7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~lv~~Y   63 (133)
T TIGR00150         7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTLVNEY   63 (133)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeeeeeec
Confidence            35667778888775 5679999999999999999999999975 33  233444444

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.68  E-value=2.7e-05  Score=65.93  Aligned_cols=41  Identities=22%  Similarity=0.225  Sum_probs=34.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc-----CCCccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L-----gY~fvDTDeLIEq~a  225 (261)
                      +|.-|.|+|++|+||||+++.|+..|     |..++|.|.+-....
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~   68 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC   68 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh
Confidence            67789999999999999999999987     457889988765543

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.65  E-value=4.7e-05  Score=55.33  Aligned_cols=29  Identities=31%  Similarity=0.383  Sum_probs=26.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      +|.++.|+|++|+||||+++.||..++..
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            36789999999999999999999999876

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.64  E-value=4.7e-05  Score=67.35  Aligned_cols=45  Identities=22%  Similarity=0.291  Sum_probs=37.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH---hCCCHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF---AKQTIDSW  232 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~---agkSI~eI  232 (261)
                      -|.+-|.+|||||||++.||+.|||+++.+-..--+.   -|.++.|.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef   49 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEF   49 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHH
Confidence            5788999999999999999999999999977665444   46777764

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.64  E-value=7.8e-05  Score=64.32  Aligned_cols=38  Identities=13%  Similarity=0.122  Sum_probs=33.9

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag  226 (261)
                      -|-|+|.+||||||+++.|+. +|+..+|+|++.-++..
T Consensus         7 ~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~   44 (208)
T PRK14731          7 LVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQV   44 (208)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcC
Confidence            377899999999999999996 99999999988777754

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.62  E-value=2.3e-05  Score=77.82  Aligned_cols=41  Identities=20%  Similarity=0.206  Sum_probs=37.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      +|..|.+.|.+||||||+++.||+.|||.++|++.+--..+
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a  323 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVT  323 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHH
Confidence            78889999999999999999999999999999998876653

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.62  E-value=8.2e-05  Score=66.29  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=37.3

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCCcc--------CcHHHHHHHhC
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL--------STKELLETFAK  226 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--------DTDeLIEq~ag  226 (261)
                      +..|.+|.|.|.+|+|||++++.||+.+|++++        ++.+++-+..+
T Consensus        18 l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~   69 (262)
T TIGR02640        18 LKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAG   69 (262)
T ss_pred             HhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcc
Confidence            446889999999999999999999999999988        56677766543

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.59  E-value=7.7e-05  Score=64.96  Aligned_cols=42  Identities=19%  Similarity=0.043  Sum_probs=34.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCc-cCcHHHHHHHhC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELLETFAK  226 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~f-vDTDeLIEq~ag  226 (261)
                      +++-|++.|.+|+||||+++.||.++|+.. +.+|.+-|.+.+
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~   44 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRP   44 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHH
Confidence            567799999999999999999999999975 666766555553

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.56  E-value=9.1e-05  Score=61.24  Aligned_cols=31  Identities=29%  Similarity=0.258  Sum_probs=27.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CCCcc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL  215 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv  215 (261)
                      +|+-|+|.|.+||||||+++.||+.|   ||..+
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~   35 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL   35 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            58889999999999999999999999   54443

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.55  E-value=9.5e-05  Score=64.02  Aligned_cols=52  Identities=15%  Similarity=0.145  Sum_probs=39.4

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCC---CHHHHHHhhCchhH
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSDSV  241 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agk---SI~eIFaeeGE~~F  241 (261)
                      |.|+|.+|||||||++.|+. +|+.++|.|++.-.....   .+.+|...=|++.+
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~   56 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSIL   56 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhc
Confidence            67999999999999999976 799999999998777542   23444444444444

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.51  E-value=2.2e-05  Score=63.47  Aligned_cols=30  Identities=27%  Similarity=0.271  Sum_probs=26.9

Q ss_pred             EEEEecCCCchhHHHHHHHHhc---CCCccCcH
Q 024881          189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTK  218 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L---gY~fvDTD  218 (261)
                      |+|.|.+||||||+++.||+.|   ||..+.+.
T Consensus         3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~   35 (200)
T cd01672           3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTR   35 (200)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            8899999999999999999999   88776553

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK12338 hypothetical protein; Provisional

Probab=97.49  E-value=0.00011  Score=69.25  Aligned_cols=42  Identities=26%  Similarity=0.156  Sum_probs=35.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCcc-CcHHHHHHHhC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAK  226 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv-DTDeLIEq~ag  226 (261)
                      +..-|.+.|.+|+||||+|+.||++||+..+ ++|.+-+.+.|
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~   45 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG   45 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence            4567888999999999999999999999988 77777776555

>PRK10646 ADP-binding protein; Provisional

Probab=97.48  E-value=0.00016  Score=61.89  Aligned_cols=42  Identities=24%  Similarity=0.248  Sum_probs=36.5

Q ss_pred             cchhHHHHHHHhhcCC-ceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          171 ESWESLTAGSMQLLKG-TSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       171 e~We~l~~g~~~lLkG-~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      +....+.+-+.+.|++ .-|+|.|++|+||||..|.||++||.
T Consensus        12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3467788888888885 45899999999999999999999995

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.47  E-value=0.00016  Score=60.48  Aligned_cols=27  Identities=22%  Similarity=0.149  Sum_probs=25.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +|.-|.|+|.+||||||+++.|+..+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            688999999999999999999999985

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.46  E-value=0.0001  Score=58.03  Aligned_cols=27  Identities=33%  Similarity=0.375  Sum_probs=25.9

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTP  214 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~f  214 (261)
                      +|.|+|++|+|||++++.||+.+++++
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~   27 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPV   27 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcce
Confidence            589999999999999999999999988

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=97.44  E-value=0.00013  Score=76.59  Aligned_cols=42  Identities=26%  Similarity=0.249  Sum_probs=38.6

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      |+++.|.+-|++||||||+++.||++|||.++||+.+.-.+|
T Consensus        32 m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a   73 (863)
T PRK12269         32 MGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT   73 (863)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence            456789999999999999999999999999999999987775

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.44  E-value=0.00023  Score=58.82  Aligned_cols=38  Identities=32%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             HHHHHHhhcCCce-EEEEecCCCchhHHHHHHHHhcCCC
Q 024881          176 LTAGSMQLLKGTS-IFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       176 l~~g~~~lLkG~s-IyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      +.+-+.+.|++-. |+|-|++|+||||..|.+|+.||..
T Consensus         4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen    4 LAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             HHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4556666776654 9999999999999999999999975

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK08356 hypothetical protein; Provisional

Probab=97.40  E-value=0.0001  Score=62.29  Aligned_cols=33  Identities=18%  Similarity=0.166  Sum_probs=28.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL  220 (261)
                      +.|.|+|++||||||+++.|++ +|+..+.+.+.
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~   38 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDP   38 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCc
Confidence            4689999999999999999964 89988887653

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.39  E-value=0.0001  Score=63.08  Aligned_cols=40  Identities=30%  Similarity=0.303  Sum_probs=33.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CC--CccCcHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLETF  224 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY--~fvDTDeLIEq~  224 (261)
                      ||.-|.|+|.+||||||+|+.|+++|   |+  -++|.|++-..+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l   45 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL   45 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence            67889999999999999999999998   44  478999886543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=97.34  E-value=0.0019  Score=49.64  Aligned_cols=83  Identities=19%  Similarity=0.270  Sum_probs=61.9

Q ss_pred             eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEe--cCeEEEEEE
Q 024881           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYID--EDQLVINLK  158 (261)
Q Consensus        81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~Id--D~~lvv~L~  158 (261)
                      |.|-|+.++|-|.|=.+.. +....++.|+.+.++|.|.+.=.+.- -.++ -+||++|.++. .=.+-  -.-|-|.|+
T Consensus         1 ~DWyQt~~~Vtitiy~K~~-~~~~~~v~v~~~~~~l~v~~~~~~~~-~~~~-~~L~~~I~~~~-~~~~~~~~~KVEI~L~   76 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSK-GNPADIVIVDDQQRELRVEIILGDKS-YLLH-LDLSNEVQWPC-EVRISTETGKIELVLK   76 (87)
T ss_pred             CCceECCCEEEEEEEEccc-CCCCccEEEECCCCEEEEEEECCCce-EEEe-eeccccCCCCc-EEEEcccCceEEEEEE
Confidence            7899999999998876653 35677888999999999987522221 2466 58999997553 33333  368999999


Q ss_pred             ecCCCCCCcc
Q 024881          159 KQDPELKWPD  168 (261)
Q Consensus       159 K~d~~m~Wp~  168 (261)
                      |.++ ++|+.
T Consensus        77 K~e~-~~W~~   85 (87)
T cd06490          77 KKEP-EKWTS   85 (87)
T ss_pred             cCCC-Ccccc
Confidence            9998 88953

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.31  E-value=0.00017  Score=52.50  Aligned_cols=29  Identities=28%  Similarity=0.213  Sum_probs=24.9

Q ss_pred             EEEEecCCCchhHHHHHHHHh---cCCCccCc
Q 024881          189 IFLVGDSTEVNEKVALELAVG---LGYTPLST  217 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~---LgY~fvDT  217 (261)
                      |.+.|.+|+||||+++.|++.   .++.++|.
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~   33 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE   33 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence            789999999999999999999   55556655

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0645 Predicted kinase [General function prediction only]

Probab=97.29  E-value=0.0003  Score=61.81  Aligned_cols=63  Identities=14%  Similarity=0.092  Sum_probs=50.0

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      +.++|.||+|||||++.||+.||+.-|-+|+.-...-|  ++++=...-+.+-++.+..|-.++-
T Consensus         4 ~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g--~p~~~r~~~g~ys~~~~~~vy~~l~   66 (170)
T COG0645           4 VLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG--VPEETRGPAGLYSPAATAAVYDELL   66 (170)
T ss_pred             EEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC--CcccccCCCCCCcHHHHHHHHHHHH
Confidence            67899999999999999999999999999999988888  5555444444566666666655543

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.25  E-value=0.00042  Score=51.26  Aligned_cols=32  Identities=22%  Similarity=0.204  Sum_probs=27.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc---CCCccCc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDT  217 (261)
                      +.+++++|.+|+|||++++.++..+   ++.++..
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~   53 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL   53 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence            5789999999999999999999998   6665544

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.23  E-value=0.00038  Score=66.02  Aligned_cols=40  Identities=13%  Similarity=0.140  Sum_probs=33.8

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      +..+.+|+   +.+.+|+|.|.+|+||||+++.||++||++++
T Consensus        54 ~~~vl~~l---~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        54 TKAICAGF---AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             HHHHHHHH---hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            33455554   45889999999999999999999999999997

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.22  E-value=0.00046  Score=68.90  Aligned_cols=34  Identities=15%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL  220 (261)
                      .=|.++|.+||||||.++.+++.+||..++.|++
T Consensus       370 ~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l  403 (526)
T TIGR01663       370 EMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL  403 (526)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence            3499999999999999999999999999999987

Note that the EC number for the kinase function is: 2.7.1.78

>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]

Probab=97.22  E-value=0.0005  Score=68.76  Aligned_cols=84  Identities=21%  Similarity=0.429  Sum_probs=75.5

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-CeEEEEE
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINL  157 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~~lvv~L  157 (261)
                      +-|-|+|+-.++.+|+.+|.  ..+.++++|..-.+++-|..+-- -+   |+ |+||..|--+-|-|-|.+ +-|-++|
T Consensus       290 p~y~w~qt~d~~~~~~~~p~--~~~~~~i~Iq~~~~~v~v~~~dh-~~---~~-g~lyasv~he~s~~ii~ean~Le~sl  362 (596)
T KOG4379|consen  290 PSYSWSQTDDNVLIRFNVPS--TASAKEINIQGSKTTVVVKHLDH-VI---FD-GELYASVGHELSAFIIAEANGLELSL  362 (596)
T ss_pred             ccceeeeccCcceEEEeccc--ccccceEEEEecCceEEEEeeee-EE---ec-cchhhhccccchhhhhhhhccceEEE
Confidence            46999999999999999999  68999999999999999987765 35   78 999999999999999999 9999999


Q ss_pred             EecCCCCCCccc
Q 024881          158 KKQDPELKWPDI  169 (261)
Q Consensus       158 ~K~d~~m~Wp~~  169 (261)
                      .|.|....||.+
T Consensus       363 ~K~de~~twprL  374 (596)
T KOG4379|consen  363 TKADEIQTWPRL  374 (596)
T ss_pred             eecccccccchh
Confidence            999887888543

>PRK08233 hypothetical protein; Provisional

Probab=97.20  E-value=0.00032  Score=56.79  Aligned_cols=28  Identities=18%  Similarity=0.044  Sum_probs=25.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      ++.-|.+.|.+||||||+++.||+.|+-
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~   29 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKN   29 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            4667899999999999999999999973

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.19  E-value=0.00034  Score=57.16  Aligned_cols=26  Identities=19%  Similarity=0.083  Sum_probs=23.5

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      |.-|.|+|++|+||||+++.|++.++
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            56799999999999999999999763

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=97.18  E-value=0.0012  Score=59.14  Aligned_cols=83  Identities=12%  Similarity=0.286  Sum_probs=69.4

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~  158 (261)
                      -+|.|-|+..+|-+.|=.+.   ..-.||+|.|..+.|.+-++-.+.=.-.+. .+||.+|.|+.|.--+--..|-|.|.
T Consensus         4 ~r~DwyQt~~~vvIti~~k~---v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~-~~L~~~I~pe~~s~k~~stKVEI~L~   79 (196)
T KOG1309|consen    4 IRHDWYQTETSVVITIFAKN---VPKEDVNVEISENTLSIVIQLPSGSEYNLQ-LKLYHEIIPEKSSFKVFSTKVEITLA   79 (196)
T ss_pred             ccceeecCCceEEEEEEecC---CCccceeEEeecceEEEEEecCCchhhhhh-HHhcccccccceeeEeeeeeEEEEec
Confidence            48999999999999987777   457899999999999998877543222345 78999999999997777789999999


Q ss_pred             ecCCCCCC
Q 024881          159 KQDPELKW  166 (261)
Q Consensus       159 K~d~~m~W  166 (261)
                      |.+. .+|
T Consensus        80 K~~~-irW   86 (196)
T KOG1309|consen   80 KAEI-IRW   86 (196)
T ss_pred             cccc-hhh
Confidence            9888 777

>PHA00729 NTP-binding motif containing protein

Probab=97.14  E-value=0.00034  Score=63.27  Aligned_cols=39  Identities=18%  Similarity=0.142  Sum_probs=34.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcC------------------CCccCcHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLG------------------YTPLSTKELLETFA  225 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~Lg------------------Y~fvDTDeLIEq~a  225 (261)
                      .||+|.|.+|+|||++|..||.++|                  ..|+|.++++++..
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~   74 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQ   74 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHH
Confidence            4899999999999999999999985                  36899999988875

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.14  E-value=0.00041  Score=56.90  Aligned_cols=37  Identities=24%  Similarity=0.255  Sum_probs=31.5

Q ss_pred             EEEEecCCCchhHHHHHHHHhc---CC--CccCcHHHHHHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLETFA  225 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L---gY--~fvDTDeLIEq~a  225 (261)
                      |+++|.+||||||+++.||..+   |+  ..+|.|.+-+.+.
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~   43 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLN   43 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhh
Confidence            7899999999999999999999   64  4679898776544

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.07  E-value=0.0025  Score=63.67  Aligned_cols=99  Identities=13%  Similarity=0.134  Sum_probs=56.2

Q ss_pred             eeCCEEEEEEccCCcceeeeeccccc-CCCCCCceeeEEecC------------eEEEEEEecCCCCCCcccccchhHHH
Q 024881          111 ADGTCLTVRVNRSGSFITLIETNQLF-DKIKPTETIWYIDED------------QLVINLKKQDPELKWPDIVESWESLT  177 (261)
Q Consensus       111 ~~~~sL~V~vk~~~~~~tlId~g~L~-~kIk~~Et~W~IdD~------------~lvv~L~K~d~~m~Wp~~~e~We~l~  177 (261)
                      ++++++.|...+.+....-+. +.+- +.+++.++.+ ++.+            .--+-+++.. +..|-||. ..+...
T Consensus       116 ~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~p-~v~~~dIg-Gl~~~i  191 (512)
T TIGR03689       116 LGDGRALVVDHSGEERVVKLA-GALADELIRAGDSLL-VDPKAGYAFEAVPKAEVEDLVLEEVP-DVTYADIG-GLDSQI  191 (512)
T ss_pred             eCCCeEEEEeCCCCeEEeehh-hhhCHhhCCCCCEEE-EcccchhhhhcCCHhHHhcceeecCC-CCCHHHcC-ChHHHH
Confidence            345566665555543322222 3333 3467777775 3320            0111234443 48888865 122333


Q ss_pred             HHHHhhc----------------CCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          178 AGSMQLL----------------KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       178 ~g~~~lL----------------kG~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      .-+.+.+                ....|.|.|++|+|||++++.+|..|+..
T Consensus       192 ~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       192 EQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             HHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            3332221                23569999999999999999999999765

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.05  E-value=0.00054  Score=62.23  Aligned_cols=44  Identities=23%  Similarity=0.383  Sum_probs=35.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CC------CccCcHHHHHHHhCCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GY------TPLSTKELLETFAKQT  228 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY------~fvDTDeLIEq~agkS  228 (261)
                      .|.+|.|.|.+|+|||++|+.+|+.+   ||      .+++.++++.++.|.+
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~  109 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHT  109 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccc
Confidence            35689999999999999999988876   33      3567788888777765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.04  E-value=0.00063  Score=55.34  Aligned_cols=22  Identities=23%  Similarity=0.169  Sum_probs=20.6

Q ss_pred             EEEEecCCCchhHHHHHHHHhc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |+|+|++|+||||+.+.|++.+
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            7899999999999999999974

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.02  E-value=0.0006  Score=60.21  Aligned_cols=39  Identities=18%  Similarity=0.275  Sum_probs=36.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq  223 (261)
                      .+.||.+.|-+|+||||+|..||+.+||.+++--++++.
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkE   44 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKE   44 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhh
Confidence            467999999999999999999999999999999888865

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.02  E-value=0.00032  Score=59.36  Aligned_cols=39  Identities=21%  Similarity=0.187  Sum_probs=32.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC---CCccCcHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLET  223 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg---Y~fvDTDeLIEq  223 (261)
                      ++.-|.|+|.+||||||+++.|++.|+   ..+++.|.....
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~   46 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKD   46 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccC
Confidence            567799999999999999999999993   345777776543

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=96.99  E-value=0.00073  Score=56.14  Aligned_cols=41  Identities=24%  Similarity=0.285  Sum_probs=33.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc---C--CCccCcHHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETF  224 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L---g--Y~fvDTDeLIEq~  224 (261)
                      =+|.-|.++|.+|+||||+++.|+..|   |  ..++|.|.+-+.+
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l   61 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGL   61 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhh
Confidence            357789999999999999999999998   4  4578998866543

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.98  E-value=0.00091  Score=57.17  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=51.1

Q ss_pred             eEEEEEEecCCCCCCcccc-cchhHHHHHHHhhcC----CceEEEEecCCCchhHHHHHHHHhc-----CCCccCcHHHH
Q 024881          152 QLVINLKKQDPELKWPDIV-ESWESLTAGSMQLLK----GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELL  221 (261)
Q Consensus       152 ~lvv~L~K~d~~m~Wp~~~-e~We~l~~g~~~lLk----G~sIyLVGmmGsGKSTVGr~LA~~L-----gY~fvDTDeLI  221 (261)
                      ||.+.|....+ ..+.+.+ .+.+-+.+.+.+...    +.+++|.|..|+|||++++.+|..+     ...++|..++.
T Consensus         4 ql~~~~~~~~~-~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~   82 (227)
T PRK08903          4 QLTLDLGPPPP-PTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL   82 (227)
T ss_pred             ccccCCCCCCh-hhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence            55555555555 5555533 334456666666644    3479999999999999999999987     77888988876


Q ss_pred             HH
Q 024881          222 ET  223 (261)
Q Consensus       222 Eq  223 (261)
                      +.
T Consensus        83 ~~   84 (227)
T PRK08903         83 LA   84 (227)
T ss_pred             HH
Confidence            65

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=96.97  E-value=0.0012  Score=62.14  Aligned_cols=41  Identities=27%  Similarity=0.332  Sum_probs=35.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCC-ccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~-fvDTDeLIEq~a  225 (261)
                      +...|.+.|.+|+||||+++.||.+||+. .+.+|.+-|.+-
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R  132 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMR  132 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHH
Confidence            45679999999999999999999999998 688888776554

>CHL00181 cbbX CbbX; Provisional

Probab=96.96  E-value=0.00071  Score=61.87  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=36.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CC------CccCcHHHHHHHhCCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GY------TPLSTKELLETFAKQT  228 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY------~fvDTDeLIEq~agkS  228 (261)
                      .|.+|.|.|.+|+|||++|+.+|+.+   ||      ..++.++++.++.|.+
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~  110 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHT  110 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccc
Confidence            47789999999999999999999865   55      4567788888887765

>PRK06761 hypothetical protein; Provisional

Probab=96.95  E-value=0.00039  Score=64.44  Aligned_cols=37  Identities=19%  Similarity=0.037  Sum_probs=30.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE  222 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE  222 (261)
                      +.-|.+.|++|+||||+++.|++.|+...++.+...+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~   39 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLE   39 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEec
Confidence            4559999999999999999999999976666555444

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.95  E-value=0.00082  Score=59.66  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=33.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~  224 (261)
                      +.|.+.|-+|.||||+++.|+ .|||..+..-+++.+.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~   37 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN   37 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence            479999999999999999999 9999999998888763

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.94  E-value=0.0062  Score=59.61  Aligned_cols=44  Identities=18%  Similarity=0.170  Sum_probs=34.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHHhCCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQT  228 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~agkS  228 (261)
                      .+..+.|.|++|+|||++++.+|..++..|+.  ..+++.++.|.+
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~  261 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDG  261 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchH
Confidence            45679999999999999999999999988864  345655555543

>PLN02842 nucleotide kinase

Probab=96.92  E-value=0.001  Score=66.49  Aligned_cols=48  Identities=17%  Similarity=0.214  Sum_probs=39.8

Q ss_pred             EEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCch
Q 024881          191 LVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSD  239 (261)
Q Consensus       191 LVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~  239 (261)
                      ++|.+||||||+++.||+.+|+.+++++++|.+.      .|+-|.+++ ..|+.
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l-~~G~l   55 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFM-NSGRL   55 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHH-hCCCC
Confidence            7899999999999999999999999999999643      455577775 45653

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.92  E-value=0.0012  Score=56.85  Aligned_cols=36  Identities=28%  Similarity=0.391  Sum_probs=32.2

Q ss_pred             HHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          176 LTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       176 l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +.+-+.+.| .|.-|+|-|+.|+||||..|.+|++||
T Consensus        14 lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          14 LGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             HHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence            456677777 777899999999999999999999999

>PRK00698 tmk thymidylate kinase; Validated

Probab=96.87  E-value=0.00087  Score=55.40  Aligned_cols=26  Identities=19%  Similarity=0.028  Sum_probs=24.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|+=|.+.|.+||||||+++.||+.|
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            68889999999999999999999987

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.86  E-value=0.0012  Score=58.34  Aligned_cols=26  Identities=15%  Similarity=0.096  Sum_probs=23.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+.|+.|.|++|+||||+++.+|+.|
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.86  E-value=0.00046  Score=68.88  Aligned_cols=40  Identities=13%  Similarity=0.096  Sum_probs=34.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc-----CCCccCcHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFA  225 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L-----gY~fvDTDeLIEq~a  225 (261)
                      |.-|++.|.+||||||+|+.||++|     ++.++|.|++=..+.
T Consensus       460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~  504 (632)
T PRK05506        460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN  504 (632)
T ss_pred             cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC
Confidence            7779999999999999999999997     568899999865443

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=96.85  E-value=0.00097  Score=55.39  Aligned_cols=30  Identities=30%  Similarity=0.385  Sum_probs=26.7

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      |.+.|.+|+||||+.+.|++.+|+.++.-+
T Consensus         2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep   31 (193)
T cd01673           2 IVVEGNIGAGKSTLAKELAEHLGYEVVPEP   31 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcccccc
Confidence            789999999999999999999999776444

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0011  Score=69.21  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=34.0

Q ss_pred             HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      -..+.+||.-++|||++|.|||++|+-+|++||..||
T Consensus       343 ~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv  379 (782)
T COG0466         343 KLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV  379 (782)
T ss_pred             HHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence            3457889999999999999999999999999999997

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.77  E-value=0.0012  Score=61.27  Aligned_cols=45  Identities=11%  Similarity=0.234  Sum_probs=38.0

Q ss_pred             cchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       171 e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      .-|+.+..-+..-+ +..|.|+|.+|+||||+++.||..+|++++-
T Consensus       148 ~~w~~i~~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       148 QHWKHIPREVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             HHHHhCCHHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            34777777777666 4579999999999999999999999999864

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.72  E-value=0.0015  Score=57.94  Aligned_cols=62  Identities=15%  Similarity=0.224  Sum_probs=44.6

Q ss_pred             EecCCCCCCcccccchhHHHHHHHhhcCC-c--eEEEEecCCCchhHHHHHHHHhcC-------CCccCcHHHH
Q 024881          158 KKQDPELKWPDIVESWESLTAGSMQLLKG-T--SIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLkG-~--sIyLVGmmGsGKSTVGr~LA~~Lg-------Y~fvDTDeLI  221 (261)
                      +|.-| +.+.+++- -+.+.+.+.+.++. .  +++|.|++|+|||++++.+|+.+.       +.+++..++.
T Consensus         7 ~ky~P-~~~~~~~g-~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~   78 (337)
T PRK12402          7 EKYRP-ALLEDILG-QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF   78 (337)
T ss_pred             HhhCC-CcHHHhcC-CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence            45666 66666663 55566667665554 3  699999999999999999999883       3456665543

>TIGR00235 udk uridine kinase

Probab=96.72  E-value=0.0011  Score=56.43  Aligned_cols=37  Identities=27%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC---CCccCcHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELL  221 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg---Y~fvDTDeLI  221 (261)
                      +|.-|.++|.+||||||+++.|+..|+   -.++..|...
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~   44 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY   44 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence            577899999999999999999999886   3456666543

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=96.71  E-value=0.00094  Score=56.69  Aligned_cols=38  Identities=21%  Similarity=0.301  Sum_probs=29.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CCCccCcHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLE  222 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDTDeLIE  222 (261)
                      +.+=+++.|.+||||||+...+...+   |+..+|+|++-+
T Consensus        14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~   54 (199)
T PF06414_consen   14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ   54 (199)
T ss_dssp             S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred             CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence            34458889999999999999999987   899999999743

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=96.65  E-value=0.0012  Score=57.55  Aligned_cols=35  Identities=11%  Similarity=0.120  Sum_probs=30.8

Q ss_pred             EEEEecCCCchhHHHHHHHHhc-CCCccCcHHHHHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLET  223 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLIEq  223 (261)
                      |.+.|.+||||||+++.|++.+ +...++.|+..-.
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            6788999999999999999999 7889988877543

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]

Probab=96.63  E-value=0.0054  Score=55.60  Aligned_cols=83  Identities=18%  Similarity=0.404  Sum_probs=70.2

Q ss_pred             CCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEcc-CC-cceeeeecccccCCCCCCceeeEEecCeEEE
Q 024881           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR-SG-SFITLIETNQLFDKIKPTETIWYIDEDQLVI  155 (261)
Q Consensus        78 t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~-~~-~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv  155 (261)
                      .+.|-|.|+..-|-+||.|.+.   -..+|.|.++..||.+.|+. || ..+ ++ ++.|-..|.++.|.=-+.-|+++|
T Consensus        74 vt~ygWDQs~kfVK~yItL~GV---~eenVqv~ftp~Sldl~v~dlqGK~y~-~~-vnnLlk~I~vEks~~kvKtd~v~I  148 (224)
T KOG3260|consen   74 VTLYGWDQSNKFVKMYITLEGV---DEENVQVEFTPMSLDLKVHDLQGKNYR-MI-VNNLLKPISVEKSSKKVKTDTVLI  148 (224)
T ss_pred             hhhcCccccCCeeEEEEEeecc---cccceeEEecccceeeeeeecCCccee-ee-hhhhccccChhhcccccccceEEE
Confidence            3579999999999999999984   38899999999999999853 22 222 23 489999999999998899999999


Q ss_pred             EEEecCCCCCC
Q 024881          156 NLKKQDPELKW  166 (261)
Q Consensus       156 ~L~K~d~~m~W  166 (261)
                      .++|++. -+|
T Consensus       149 ~~kkVe~-~rw  158 (224)
T KOG3260|consen  149 LCKKVEN-TRW  158 (224)
T ss_pred             eehhhhc-ccc
Confidence            9999998 666

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=96.63  E-value=0.0015  Score=61.01  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=31.2

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL  220 (261)
                      +.-|+++|++|+|||+++..||+.+|..+++.|.+
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            34599999999999999999999999988888774

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.58  E-value=0.0018  Score=62.56  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=30.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      ...+|.|+|++|+|||++++.||+.++.+|+..|.
T Consensus       107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~  141 (412)
T PRK05342        107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA  141 (412)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence            34689999999999999999999999999985543

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=96.57  E-value=0.0025  Score=63.42  Aligned_cols=43  Identities=26%  Similarity=0.230  Sum_probs=36.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCC-ccCcHHHHHHHhCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETFAKQ  227 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~-fvDTDeLIEq~agk  227 (261)
                      +..-|.++|.+|+||||++..||.+||+. ++.+|.+-+.+.+-
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~  297 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM  297 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence            35668999999999999999999999998 67888876655543

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.56  E-value=0.0036  Score=60.63  Aligned_cols=41  Identities=22%  Similarity=0.277  Sum_probs=33.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHHhCC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ  227 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~agk  227 (261)
                      .+++|.|++|+|||++++.||..+|.+|+..  .++++...|.
T Consensus        89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~  131 (495)
T TIGR01241        89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV  131 (495)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcc
Confidence            3699999999999999999999999888654  4555555443

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.56  E-value=0.0029  Score=57.86  Aligned_cols=40  Identities=25%  Similarity=0.308  Sum_probs=35.3

Q ss_pred             HHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      +..-...++.|.++.|.|.+|.|||++++.+|+.+|..|+
T Consensus        33 ~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~   72 (329)
T COG0714          33 IELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFV   72 (329)
T ss_pred             HHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            4445567889999999999999999999999999998875

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.0038  Score=64.81  Aligned_cols=68  Identities=18%  Similarity=0.194  Sum_probs=57.4

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCCC---HHHHHHhh-------------------CchhHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQT---IDSWMLAE-------------------GSDSVVN  243 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agkS---I~eIFaee-------------------GE~~FRe  243 (261)
                      -|.|-|++|+|||.+|+.+|..||.+|+  ...++|-.+.|-|   |.|.|.+-                   -|.+=||
T Consensus       225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqre  304 (802)
T KOG0733|consen  225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQRE  304 (802)
T ss_pred             ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHH
Confidence            3889999999999999999999999996  5788998888865   77777642                   3567899


Q ss_pred             hHHHHHHHHhcc
Q 024881          244 GECDVLESLIMF  255 (261)
Q Consensus       244 lEs~VLeels~~  255 (261)
                      +|.++.+||...
T Consensus       305 MErRiVaQLlt~  316 (802)
T KOG0733|consen  305 MERRIVAQLLTS  316 (802)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999854

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.53  E-value=0.0026  Score=60.27  Aligned_cols=40  Identities=20%  Similarity=0.211  Sum_probs=33.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAK  226 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~ag  226 (261)
                      .+|.|.|++|+|||++++.+|..+|..|+  +..++..+..|
T Consensus       166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g  207 (389)
T PRK03992        166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG  207 (389)
T ss_pred             CceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc
Confidence            46999999999999999999999998875  45566655554

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.52  E-value=0.0044  Score=53.45  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=22.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .+.|+|++|+||||+++.++..+.
T Consensus        45 ~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        45 FILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcC
Confidence            588999999999999999999986

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.51  E-value=0.0029  Score=64.17  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=39.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHHhCCC---HHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQT---IDSWML  234 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~agkS---I~eIFa  234 (261)
                      ...|.|.|++|+|||++++.||..+|..|+.  ..+++.++.|.+   |.++|.
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~  540 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFR  540 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHH
Confidence            3458999999999999999999999998875  467888777765   555554

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK06696 uridine kinase; Validated

Probab=96.49  E-value=0.0076  Score=52.18  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=26.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc---CCCcc--CcHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL---GYTPL--STKELL  221 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L---gY~fv--DTDeLI  221 (261)
                      -|-+.|.+||||||+++.||+.|   |...+  ..|++.
T Consensus        24 iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         24 RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            47888999999999999999999   65443  345443

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.48  E-value=0.0022  Score=53.94  Aligned_cols=38  Identities=16%  Similarity=0.142  Sum_probs=30.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE  222 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIE  222 (261)
                      .+.+|+|+|..|+|||++++.+|..+.     +.++|.+++.+
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~   79 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ   79 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence            456899999999999999999998874     34677766643

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.47  E-value=0.0023  Score=65.33  Aligned_cols=70  Identities=23%  Similarity=0.293  Sum_probs=55.9

Q ss_pred             ccccCCCCCCceeeEEecCeEEEEEEecCCCCCCcccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          133 NQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       133 g~L~~kIk~~Et~W~IdD~~lvv~L~K~d~~m~Wp~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      ..+|+|-||.-.      ++|.|+=+|++-=-.       |=-.++-....|++.=++|.|+.|+||||+-++||+.|||
T Consensus        70 elW~eKy~P~t~------eeLAVHkkKI~eVk~-------WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~  136 (634)
T KOG1970|consen   70 ELWVEKYKPRTL------EELAVHKKKISEVKQ-------WLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGY  136 (634)
T ss_pred             chhHHhcCcccH------HHHhhhHHhHHHHHH-------HHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence            345666666421      678888899887333       5447788889999999999999999999999999999999


Q ss_pred             Ccc
Q 024881          213 TPL  215 (261)
Q Consensus       213 ~fv  215 (261)
                      ...
T Consensus       137 ~~~  139 (634)
T KOG1970|consen  137 QLI  139 (634)
T ss_pred             eee
Confidence            754

>PHA02244 ATPase-like protein

Probab=96.45  E-value=0.0019  Score=62.77  Aligned_cols=70  Identities=17%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             EEEEEEecCCCCCCcccccc----------hhHHHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881          153 LVINLKKQDPELKWPDIVES----------WESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (261)
Q Consensus       153 lvv~L~K~d~~m~Wp~~~e~----------We~l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI  221 (261)
                      |-|.+++|+.--.|.|+..-          +.-+..-+.+.+ .|.+|+|+|.+|+|||++++.||..+|++|+....+.
T Consensus        75 ~~~~~~~~~~~~~~~~l~~~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~  154 (383)
T PHA02244         75 LPVKIELQQEGKPAGDISGIDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM  154 (383)
T ss_pred             CchHHHHhhccCCcCchhhCCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence            44555555554555554433          444444444333 4778999999999999999999999999998766544


Q ss_pred             H
Q 024881          222 E  222 (261)
Q Consensus       222 E  222 (261)
                      +
T Consensus       155 d  155 (383)
T PHA02244        155 D  155 (383)
T ss_pred             H
Confidence            3

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.45  E-value=0.0035  Score=53.52  Aligned_cols=42  Identities=21%  Similarity=0.443  Sum_probs=34.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CC--CccCcHHHHHHHhC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLETFAK  226 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY--~fvDTDeLIEq~ag  226 (261)
                      +|.|++|.|.+|+|||.++..+|..+   ||  .|+++++|+++...
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~   92 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ   92 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence            68899999999999999999998654   65  58999999999864

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.45  E-value=0.0024  Score=59.28  Aligned_cols=49  Identities=18%  Similarity=0.045  Sum_probs=37.2

Q ss_pred             eEEEEEEecCCCCCCcccccchhHHHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          152 QLVINLKKQDPELKWPDIVESWESLTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       152 ~lvv~L~K~d~~m~Wp~~~e~We~l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -|.++.++...          |-.+..++. +.-+|..+-|||.+||||||++|.||-..
T Consensus         8 nl~~~y~~~~~----------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124           8 NLSIVYGGGKF----------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             ceEEEecCCcc----------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence            35566666665          444555555 67789999999999999999999999644

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=96.45  E-value=0.0032  Score=52.53  Aligned_cols=27  Identities=30%  Similarity=0.282  Sum_probs=24.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +|+-|+|+|++|+||+|+.+.|.+.+.
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            578899999999999999999998764

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.45  E-value=0.0021  Score=52.36  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      .|.|+|-.|+||||+.+.||+. ||+++
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            4899999999999999999999 99988

>PRK09183 transposase/IS protein; Provisional

Probab=96.45  E-value=0.003  Score=56.79  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=32.7

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHh---cCC--CccCcHHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVG---LGY--TPLSTKELLETF  224 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~---LgY--~fvDTDeLIEq~  224 (261)
                      -+|.+++|+|++|+|||+++..||..   -||  .|++..++++..
T Consensus       100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l  145 (259)
T PRK09183        100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQL  145 (259)
T ss_pred             hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHH
Confidence            45889999999999999999999755   366  466777777553

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.45  E-value=0.0021  Score=59.53  Aligned_cols=31  Identities=19%  Similarity=0.198  Sum_probs=27.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      .-|.|.|++||||||+++.|+ .+||.++|..
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~   37 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALE-DLGYYCVDNL   37 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHH-HcCCeEECCc
Confidence            359999999999999999997 6799999975

>PRK13973 thymidylate kinase; Provisional

Probab=96.44  E-value=0.00099  Score=57.50  Aligned_cols=34  Identities=29%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc---CCCccCc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDT  217 (261)
                      |+|+=|.|-|.-||||||.++.||+.|   ||..+-+
T Consensus         1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~   37 (213)
T PRK13973          1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT   37 (213)
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            367789999999999999999999999   9998866

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.44  E-value=0.0022  Score=51.37  Aligned_cols=40  Identities=20%  Similarity=0.080  Sum_probs=24.1

Q ss_pred             hhHHHHHH--HhhcCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          173 WESLTAGS--MQLLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       173 We~l~~g~--~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      |+.+..-+  ..--.+.+++|+|..|+|||++.+.++..+.-
T Consensus         9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~   50 (185)
T PF13191_consen    9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE   50 (185)
T ss_dssp             HHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            44444444  33345667999999999999999988776643

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.44  E-value=0.0026  Score=53.67  Aligned_cols=23  Identities=30%  Similarity=0.200  Sum_probs=21.9

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      |-+.|.+||||||+++.|+..|+
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67899999999999999999997

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.39  E-value=0.0045  Score=57.40  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=33.0

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQ  227 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agk  227 (261)
                      +..|.|+|++|+|||++++.+|..++..|+  +..++..+..|.
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~  199 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGE  199 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhH
Confidence            456999999999999999999999998875  344555554443

Many proteins may score above the trusted cutoff because an internal

>PRK08181 transposase; Validated

Probab=96.38  E-value=0.0046  Score=56.68  Aligned_cols=41  Identities=22%  Similarity=0.451  Sum_probs=34.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~a  225 (261)
                      +|.||+|+|++|+|||.++..+|..+   ||.  |++..+|+++..
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~  150 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ  150 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHH
Confidence            68899999999999999999998644   655  688999998763

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.37  E-value=0.0019  Score=54.06  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC---CCccCcHHHHHHHhC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLETFAK  226 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg---Y~fvDTDeLIEq~ag  226 (261)
                      |.|+|.+||||||+++.|+..|+   -.+++.|.+.-....
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~   42 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSH   42 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccccccc
Confidence            67999999999999999999983   557777776644433

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.37  E-value=0.0027  Score=61.03  Aligned_cols=43  Identities=14%  Similarity=0.161  Sum_probs=34.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHHhCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ  227 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~agk  227 (261)
                      .+..|.|.|++|+|||++++.+|..++.+|+..  .+++.+..|.
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge  222 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGE  222 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcch
Confidence            367899999999999999999999999988654  3555555554

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.37  E-value=0.0077  Score=54.36  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=45.4

Q ss_pred             cchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCC-----CccCcHHHHHHHh
Q 024881          171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFA  225 (261)
Q Consensus       171 e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY-----~fvDTDeLIEq~a  225 (261)
                      ..=.++...+...-+|.|++|.|.+|+|||-++..+|.+|-.     .|+.+.+++.++.
T Consensus        90 ~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk  149 (254)
T COG1484          90 KALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK  149 (254)
T ss_pred             HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence            345677777777779999999999999999999999888742     3788889888776

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.36  E-value=0.0045  Score=54.95  Aligned_cols=28  Identities=18%  Similarity=0.189  Sum_probs=25.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTP  214 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~f  214 (261)
                      .+++|.|++|+|||++++.+|..+|..+
T Consensus        31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        31 DHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            4699999999999999999999998764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PLN02772 guanylate kinase

Probab=96.33  E-value=0.0079  Score=58.77  Aligned_cols=121  Identities=15%  Similarity=0.168  Sum_probs=71.0

Q ss_pred             cccccccccccccCCCCCCceEEcccCce----EEEEEe--------cCC--cccccccc--eEEEeeCCEEEEEEccCC
Q 024881           61 DRRRFTCSNSLSSIPANTSQYEFSDGSAE----IELRLQ--------LGS--LEIQSSKD--IFVDADGTCLTVRVNRSG  124 (261)
Q Consensus        61 ~~~~~~~~~~~~~~~~~t~~Y~wTqtl~E----vEvrlp--------l~~--~~~~~skD--v~Vd~~~~sL~V~vk~~~  124 (261)
                      .+..-|| +|-++.......|.|--...+    ..|++=        .|.  ...-.+||  -.|-+++++|.|-=|+.+
T Consensus        19 ~~~~~~~-~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~   97 (398)
T PLN02772         19 GFGVKPK-NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA   97 (398)
T ss_pred             CccCCCC-CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence            4445588 888888888889999743332    244431        111  01123333  456666777766434432


Q ss_pred             cceeeeecccccCCCCCCceeeEEecCeEEEEEEe----cCCCCCCcccccchhHHHHHHHhhcCCceEEEEecCCCchh
Q 024881          125 SFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK----QDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNE  200 (261)
Q Consensus       125 ~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K----~d~~m~Wp~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKS  200 (261)
                                      ++||+|+++=|+=.|.=+|    .+. ..|+          .|+.. -+++-|+|+|++|+||+
T Consensus        98 ----------------~~~~~w~l~~~t~~~~~~~~~~~~eV-~~~~----------~~~~~-~~~k~iVlsGPSGvGKs  149 (398)
T PLN02772         98 ----------------PDDSIWFLEVDTPFVREQKKLLGTEV-VAWS----------KGVRG-NAEKPIVISGPSGVGKG  149 (398)
T ss_pred             ----------------CccceEEEEcCCHHHHhhccccccee-eecc----------cCCCC-CCCcEEEEECCCCCCHH
Confidence                            4699999997554432221    112 3341          11111 12346999999999999


Q ss_pred             HHHHHHHHhc
Q 024881          201 KVALELAVGL  210 (261)
Q Consensus       201 TVGr~LA~~L  210 (261)
                      |+.+.|.+.+
T Consensus       150 TL~~~L~~~~  159 (398)
T PLN02772        150 TLISMLMKEF  159 (398)
T ss_pred             HHHHHHhhhc
Confidence            9999998753

>PRK04195 replication factor C large subunit; Provisional

Probab=96.33  E-value=0.0034  Score=60.76  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      ...++|.|++|+||||+++.||+.+||.++..
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            56799999999999999999999999988755

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=96.32  E-value=0.041  Score=41.80  Aligned_cols=74  Identities=20%  Similarity=0.322  Sum_probs=57.0

Q ss_pred             EcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccC---------------CcceeeeecccccCCCCCCceeeE
Q 024881           83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS---------------GSFITLIETNQLFDKIKPTETIWY  147 (261)
Q Consensus        83 wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~---------------~~~~tlId~g~L~~kIk~~Et~W~  147 (261)
                      +.++...+.|++.+|+   ....|+.|.++++.|.|.-+..               +.+..-   =+|++.+.++.-...
T Consensus         2 i~e~~~~~~i~~~lpG---~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~---~~lP~~vd~~~i~a~   75 (102)
T PF00011_consen    2 IKEDEDEYIIKVDLPG---FDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERS---IRLPEDVDPDKIKAS   75 (102)
T ss_dssp             EEESSSEEEEEEE-TT---S-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEE---EE-STTB-GGG-EEE
T ss_pred             eEECCCEEEEEEECCC---CChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEE---EcCCCcCCcceEEEE
Confidence            6788899999999998   4577999999999999988776               233222   247778888888888


Q ss_pred             EecCeEEEEEEecCC
Q 024881          148 IDEDQLVINLKKQDP  162 (261)
Q Consensus       148 IdD~~lvv~L~K~d~  162 (261)
                      ++|..|.|.+.|...
T Consensus        76 ~~~GvL~I~~pk~~~   90 (102)
T PF00011_consen   76 YENGVLTITIPKKEE   90 (102)
T ss_dssp             ETTSEEEEEEEBSSS
T ss_pred             ecCCEEEEEEEcccc
Confidence            999999999999876

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.0027  Score=66.63  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=32.7

Q ss_pred             HHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       180 ~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      +..-.+|.-|+|+|++|.|||++||-+|.+||..|+
T Consensus       432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf  467 (906)
T KOG2004|consen  432 LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF  467 (906)
T ss_pred             hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence            445678889999999999999999999999999987

>PLN02748 tRNA dimethylallyltransferase

Probab=96.30  E-value=0.0029  Score=62.60  Aligned_cols=35  Identities=17%  Similarity=0.298  Sum_probs=32.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      +|.-|+++|..|+|||+++..||+++|+..++.|.
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            44469999999999999999999999999999996

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.29  E-value=0.0029  Score=58.86  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=29.0

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      |+++|++|+|||+++..||+.+|...+..|.
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds   32 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS   32 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence            7899999999999999999999988888876

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.28  E-value=0.004  Score=53.00  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcC--CCccCc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLG--YTPLST  217 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDT  217 (261)
                      ++.|+++|.+|||||+.+..||.++|  +.+++|
T Consensus         1 ~~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat   34 (170)
T PRK05800          1 GMLILVTGGARSGKSRFAERLAAQSGLQVLYIAT   34 (170)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence            35799999999999999999999987  557777

>PF13173 AAA_14: AAA domain

Probab=96.27  E-value=0.006  Score=48.27  Aligned_cols=38  Identities=16%  Similarity=0.079  Sum_probs=31.8

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcC----CCccCcHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELLET  223 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~Lg----Y~fvDTDeLIEq  223 (261)
                      +..+.|.|..|+||||+.+.+|+.+.    +-++|.|+.-..
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~   43 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDR   43 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHH
Confidence            34689999999999999999999887    777877766554

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.26  E-value=0.004  Score=59.89  Aligned_cols=54  Identities=13%  Similarity=0.200  Sum_probs=42.6

Q ss_pred             ccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHH
Q 024881          170 VESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETF  224 (261)
Q Consensus       170 ~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~  224 (261)
                      ..-|+.+-.-+..-+.- +|.|+|..|+||||+++.||+.+|+.++.  ..+.+++.
T Consensus       204 ~~~w~~i~~~vr~~~~~-~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~  259 (399)
T PRK08099        204 FRYWEYIPTEVRPFFVR-TVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSH  259 (399)
T ss_pred             HHHHHhcCHHHhhCCCc-EEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHh
Confidence            33499999888876665 49999999999999999999999998543  33455543

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.26  E-value=0.0044  Score=50.74  Aligned_cols=30  Identities=30%  Similarity=0.308  Sum_probs=25.8

Q ss_pred             EEEEecCCCchhHHHHHHHHhc---CCC--ccCcH
Q 024881          189 IFLVGDSTEVNEKVALELAVGL---GYT--PLSTK  218 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTD  218 (261)
                      +.++|++|+||||+.+.||..+   |++  ++|+|
T Consensus         3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            6789999999999999999886   775  47877

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.24  E-value=0.0036  Score=60.94  Aligned_cols=32  Identities=22%  Similarity=0.161  Sum_probs=28.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      .+.+|.|+|++|+|||++++.||+.||.+|+-
T Consensus       115 ~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~  146 (413)
T TIGR00382       115 SKSNILLIGPTGSGKTLLAQTLARILNVPFAI  146 (413)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence            34589999999999999999999999988863

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=96.23  E-value=0.0037  Score=54.16  Aligned_cols=27  Identities=33%  Similarity=0.333  Sum_probs=24.4

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      |.+-|..||||||+++.||+.|++.++
T Consensus         2 I~iEG~~GsGKSTl~~~L~~~l~~~~~   28 (219)
T cd02030           2 ITVDGNIASGKGKLAKELAEKLGMKYF   28 (219)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            788999999999999999999987544

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>cd04177 RSR1 RSR1 subgroup

Probab=96.21  E-value=0.0013  Score=52.79  Aligned_cols=62  Identities=8%  Similarity=0.140  Sum_probs=40.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHH--------HHHHhhCchhHHhhHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID--------SWMLAEGSDSVVNGECDVLES  251 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~--------eIFaeeGE~~FRelEs~VLee  251 (261)
                      +|.|||++|+||||+.+.++..--..-.+  .-+.....+++.        ++++..|.+.|+.+....++.
T Consensus         3 ki~liG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   72 (168)
T cd04177           3 KIVVLGAGGVGKSALTVQFVQNVFIESYD--PTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKS   72 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCcccC--CcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhh
Confidence            69999999999999999998654222222  112222233333        577888888888776665543

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PLN02840 tRNA dimethylallyltransferase

Probab=96.20  E-value=0.0034  Score=61.57  Aligned_cols=41  Identities=27%  Similarity=0.311  Sum_probs=35.0

Q ss_pred             HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      |..+..++.-|+++|..|+||||++..||+.+|..+++.|.
T Consensus        14 ~~~~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         14 GASKTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            44456667779999999999999999999999988887775

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.19  E-value=0.0046  Score=53.25  Aligned_cols=27  Identities=15%  Similarity=0.068  Sum_probs=23.2

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -=+|.-|+|+|.+|+||||+.+.|++.
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            346777999999999999999999853

>PRK06526 transposase; Provisional

Probab=96.19  E-value=0.007  Score=54.71  Aligned_cols=41  Identities=12%  Similarity=0.231  Sum_probs=33.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~a  225 (261)
                      ++.||+|+|+.|+|||.++..||..+   ||+  |+...+++++..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~  142 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA  142 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence            57799999999999999999998764   665  456677777664

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.17  E-value=0.0069  Score=52.05  Aligned_cols=69  Identities=12%  Similarity=0.099  Sum_probs=46.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC----------------------CCccCcHHHHHHHh---------------CC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG----------------------YTPLSTKELLETFA---------------KQ  227 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg----------------------Y~fvDTDeLIEq~a---------------gk  227 (261)
                      +|.=|+|+|++|+||+||.+.|.+.+.                      |.|++-++.-+...               |-
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt   82 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT   82 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence            466799999999999999999988762                      67777666544422               11


Q ss_pred             ---CHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881          228 ---TIDSWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       228 ---SI~eIFaeeGE~~FRelEs~VLeels~  254 (261)
                         +|.++ .++|...+-+++-+.+.++..
T Consensus        83 ~~~~i~~~-~~~g~~~i~d~~~~g~~~l~~  111 (186)
T PRK14737         83 PKAFIEDA-FKEGRSAIMDIDVQGAKIIKE  111 (186)
T ss_pred             cHHHHHHH-HHcCCeEEEEcCHHHHHHHHH
Confidence               24444 355555555666666666654

>smart00072 GuKc Guanylate kinase homologues

Probab=96.15  E-value=0.0044  Score=52.02  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=23.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .|+-|+|+|++|+||+|+.+.|.+..
T Consensus         1 ~~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        1 DRRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHhcC
Confidence            36789999999999999999998885

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.14  E-value=0.0044  Score=62.92  Aligned_cols=38  Identities=18%  Similarity=0.185  Sum_probs=31.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLET  223 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq  223 (261)
                      +..|+|.|++|+|||++++.+|..+|..|+.  ..+++.+
T Consensus       212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~  251 (733)
T TIGR01243       212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK  251 (733)
T ss_pred             CceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence            5679999999999999999999999988763  3344433

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=96.13  E-value=0.0041  Score=62.87  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=31.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHHhC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAK  226 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~ag  226 (261)
                      .+|.|+|++|+|||++++.+|..+|.+|+..  .++.+...|
T Consensus       186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g  227 (644)
T PRK10733        186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG  227 (644)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence            3599999999999999999999999988754  344444333

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.13  E-value=0.0045  Score=56.79  Aligned_cols=30  Identities=20%  Similarity=0.129  Sum_probs=25.8

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      |+.|.|++|.||||+|+.+|+.+|+.|.-+
T Consensus        52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~   81 (233)
T PF05496_consen   52 HMLFYGPPGLGKTTLARIIANELGVNFKIT   81 (233)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred             eEEEECCCccchhHHHHHHHhccCCCeEec
Confidence            799999999999999999999999988543

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=96.11  E-value=0.0069  Score=52.51  Aligned_cols=70  Identities=16%  Similarity=0.155  Sum_probs=45.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCC--ccCcHHHHHHHhCCCHH---HH-HH---hhCchhHHhhHHHHHHHHhcc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLETFAKQTID---SW-ML---AEGSDSVVNGECDVLESLIMF  255 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDTDeLIEq~agkSI~---eI-Fa---eeGE~~FRelEs~VLeels~~  255 (261)
                      |.=|+|-|.|-|||||++|.|...|.=+  .+..|.+++.+..+-..   .+ +.   .++++.|+.++....+.+..+
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~   79 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAM   79 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999654  46779999854432221   10 11   112577888888877776654

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=96.11  E-value=0.0046  Score=55.68  Aligned_cols=50  Identities=28%  Similarity=0.360  Sum_probs=37.9

Q ss_pred             HHHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHH
Q 024881          175 SLTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETF  224 (261)
Q Consensus       175 ~l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~  224 (261)
                      .+++.-.+.+   +|.-|.|.|.+||||||+|..|++.|   ||.  .+|-|.+=.-.
T Consensus         9 ~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL   66 (197)
T COG0529           9 SVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGL   66 (197)
T ss_pred             ccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcc
Confidence            3555555555   45579999999999999999999987   776  47888775443

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=96.05  E-value=0.045  Score=41.68  Aligned_cols=73  Identities=14%  Similarity=0.311  Sum_probs=57.8

Q ss_pred             eEEcccCceEEEEEecCCcccccccceEEEeeCC-EEEEEEccC-----------------CcceeeeecccccCCCCCC
Q 024881           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGT-CLTVRVNRS-----------------GSFITLIETNQLFDKIKPT  142 (261)
Q Consensus        81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~-sL~V~vk~~-----------------~~~~tlId~g~L~~kIk~~  142 (261)
                      +.|.++-.++.|++.||+   .+..|+.|+++++ .|+|.-++.                 +.+..   +=.|++.|.++
T Consensus         2 ~dv~E~~~~~~i~~~lPG---v~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r---~i~LP~~v~~~   75 (92)
T cd06472           2 VDWKETPEAHVFKADVPG---VKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVR---RFRLPENADAD   75 (92)
T ss_pred             ccEEEcCCeEEEEEECCC---CChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEE---EEECCCCCCHH
Confidence            467789999999999999   6788999999875 899987543                 12211   12578889888


Q ss_pred             ceeeEEecCeEEEEEEe
Q 024881          143 ETIWYIDEDQLVINLKK  159 (261)
Q Consensus       143 Et~W~IdD~~lvv~L~K  159 (261)
                      .---.++|..|.|.|.|
T Consensus        76 ~i~A~~~nGvL~I~lPK   92 (92)
T cd06472          76 EVKAFLENGVLTVTVPK   92 (92)
T ss_pred             HCEEEEECCEEEEEecC
Confidence            88889999999999876

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>PRK09087 hypothetical protein; Validated

Probab=96.04  E-value=0.0032  Score=55.59  Aligned_cols=35  Identities=11%  Similarity=0.015  Sum_probs=31.3

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE  222 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE  222 (261)
                      .+||+|..|+|||++.+.+++..+..++|.+++..
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~   80 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS   80 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence            49999999999999999999999999999965444

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.07  Score=44.15  Aligned_cols=81  Identities=22%  Similarity=0.359  Sum_probs=67.4

Q ss_pred             CCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC-----------------cceeeeecccccCC
Q 024881           76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG-----------------SFITLIETNQLFDK  138 (261)
Q Consensus        76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~-----------------~~~tlId~g~L~~k  138 (261)
                      ..++.|..-++..++.|.+.||+   .+.+||.|.++++.|+|..+...                 .+..-|   .|.+.
T Consensus        38 ~~~P~vdi~e~~~~~~I~~elPG---~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~---~Lp~~  111 (146)
T COG0071          38 TGTPPVDIEETDDEYRITAELPG---VDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTF---RLPEK  111 (146)
T ss_pred             CCCCcEEEEEcCCEEEEEEEcCC---CChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEE---ECccc
Confidence            34668999999999999999999   67999999999999999998753                 332223   48889


Q ss_pred             CCCCceeeEEecCeEEEEEEecCC
Q 024881          139 IKPTETIWYIDEDQLVINLKKQDP  162 (261)
Q Consensus       139 Ik~~Et~W~IdD~~lvv~L~K~d~  162 (261)
                      |+++.--=..++..|+|.|.|..+
T Consensus       112 v~~~~~~A~~~nGvL~I~lpk~~~  135 (146)
T COG0071         112 VDPEVIKAKYKNGLLTVTLPKAEP  135 (146)
T ss_pred             ccccceeeEeeCcEEEEEEecccc
Confidence            998876667899999999999876

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=96.03  E-value=0.007  Score=53.22  Aligned_cols=51  Identities=24%  Similarity=0.283  Sum_probs=38.6

Q ss_pred             EecCCCCCCcccccchhHHHHHHHhhcCCc---eEEEEecCCCchhHHHHHHHHhc
Q 024881          158 KKQDPELKWPDIVESWESLTAGSMQLLKGT---SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLkG~---sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-| ..|.|+.. .+.+++-+.+.++..   +++|.|..|+|||++++.+|..+
T Consensus         9 ~kyrP-~~~~~~~g-~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440          9 EKYRP-RTLDEIVG-QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             hhhCC-CcHHHhcC-cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45556 56666653 445666777666543   59999999999999999999987

>PRK13695 putative NTPase; Provisional

Probab=95.98  E-value=0.0055  Score=50.62  Aligned_cols=28  Identities=25%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc---CCCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL---GYTP  214 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L---gY~f  214 (261)
                      ++|.|+|.+|+||||+.+.++..+   |+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~   31 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV   31 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            479999999999999999998876   6653

>PRK07667 uridine kinase; Provisional

Probab=95.96  E-value=0.0062  Score=51.86  Aligned_cols=35  Identities=9%  Similarity=0.090  Sum_probs=29.0

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE  222 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIE  222 (261)
                      -|-+-|.+||||||+++.|++.|+     ...++.|+..-
T Consensus        19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~   58 (193)
T PRK07667         19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV   58 (193)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence            477889999999999999999873     34888988553

>CHL00176 ftsH cell division protein; Validated

Probab=95.93  E-value=0.0072  Score=61.63  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETF  224 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~  224 (261)
                      .+|.|+|++|+|||++++.||..+|++|+..  .++.+..
T Consensus       217 ~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~  256 (638)
T CHL00176        217 KGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF  256 (638)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence            4699999999999999999999999988754  3444443

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=95.93  E-value=0.0064  Score=60.35  Aligned_cols=32  Identities=28%  Similarity=0.119  Sum_probs=28.1

Q ss_pred             HHhhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       180 ~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +..+..|.+|.|.|++|+|||++++.||..++
T Consensus       188 ~~~L~~~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        188 LKRLTIKKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             HHHHhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            44455788999999999999999999999985

>PLN03025 replication factor C subunit; Provisional

Probab=95.91  E-value=0.0077  Score=54.90  Aligned_cols=51  Identities=25%  Similarity=0.271  Sum_probs=35.7

Q ss_pred             EecCCCCCCcccccchhHHHHHHHhhcCC---ceEEEEecCCCchhHHHHHHHHhc
Q 024881          158 KKQDPELKWPDIVESWESLTAGSMQLLKG---TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLkG---~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-| -.+-|++- .+-+++.+.+.+++   .+++|.|++|+||||+++.+|+.|
T Consensus         5 ~kyrP-~~l~~~~g-~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025          5 EKYRP-TKLDDIVG-NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             hhcCC-CCHHHhcC-cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34444 44545542 34455555555443   479999999999999999999998

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.91  E-value=0.0068  Score=47.18  Aligned_cols=28  Identities=21%  Similarity=0.201  Sum_probs=25.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+.+.|+..+
T Consensus         8 i~~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen    8 IKPGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEEccCCCccccceeeecccc
Confidence            4468889999999999999999998776

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=95.90  E-value=0.0053  Score=52.01  Aligned_cols=34  Identities=18%  Similarity=0.121  Sum_probs=28.6

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE  222 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIE  222 (261)
                      |.+.|.+||||||+++.|++.|+     ...+..|++.-
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            67899999999999999999983     35677787764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.90  E-value=0.0062  Score=56.84  Aligned_cols=30  Identities=17%  Similarity=0.090  Sum_probs=26.4

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .+-+|..+-|||-+|+||||+||.|...+.
T Consensus        35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~   64 (268)
T COG4608          35 SIKEGETLGLVGESGCGKSTLGRLILGLEE   64 (268)
T ss_pred             EEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence            455788899999999999999999998765

>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.026  Score=50.33  Aligned_cols=88  Identities=17%  Similarity=0.308  Sum_probs=69.6

Q ss_pred             ceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEEe
Q 024881           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK  159 (261)
Q Consensus        80 ~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~K  159 (261)
                      .--|.|.-.=|=|.|-|..     ++|+.|.+..+.|.+.-|+...---+...=+||++|.|.+++=.+-...|.+-|+|
T Consensus         9 ~v~Waqr~~~vyltv~Ved-----~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K   83 (180)
T KOG3158|consen    9 EVKWAQRRDLVYLTVCVED-----AKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRK   83 (180)
T ss_pred             cchhhhhcCeEEEEEEecc-----CccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEc
Confidence            3468888777767776665     79999999999999998884432222222469999999999988888999999999


Q ss_pred             cCCCCCCcccccchhHHHHH
Q 024881          160 QDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       160 ~d~~m~Wp~~~e~We~l~~g  179 (261)
                      .+.+ +|      |+.||+-
T Consensus        84 ~e~~-~~------WprLtke   96 (180)
T KOG3158|consen   84 KELG-EY------WPRLTKE   96 (180)
T ss_pred             cccc-cc------cchhhhc
Confidence            9995 88      9999864

>PRK13342 recombination factor protein RarA; Reviewed

Probab=95.83  E-value=0.011  Score=56.17  Aligned_cols=33  Identities=15%  Similarity=0.014  Sum_probs=29.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      +..+++|.|++|+||||+++.||+.++..|+..
T Consensus        35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l   67 (413)
T PRK13342         35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL   67 (413)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            344899999999999999999999999988754

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.83  E-value=0.0081  Score=45.97  Aligned_cols=25  Identities=16%  Similarity=0.153  Sum_probs=20.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +..++++|..|+|||++.+.+++.+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999999987

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=95.81  E-value=0.0092  Score=60.92  Aligned_cols=36  Identities=25%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc----------CCCccCcH--HHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK--ELL  221 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L----------gY~fvDTD--eLI  221 (261)
                      ..|+.|+|++|+|||++++.||+++          |+.++..|  .++
T Consensus       203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~  250 (731)
T TIGR02639       203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL  250 (731)
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence            4489999999999999999999998          88887766  555

>TIGR00763 lon ATP-dependent protease La

Probab=95.77  E-value=0.0076  Score=61.97  Aligned_cols=32  Identities=22%  Similarity=0.275  Sum_probs=29.6

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      .+|.++.|+|++|+|||++++.||..||..|+
T Consensus       345 ~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~  376 (775)
T TIGR00763       345 MKGPILCLVGPPGVGKTSLGKSIAKALNRKFV  376 (775)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence            46778999999999999999999999998886

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=95.77  E-value=0.0064  Score=55.34  Aligned_cols=47  Identities=17%  Similarity=0.193  Sum_probs=33.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGS  238 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE  238 (261)
                      +-|.+-||-|+||||+++.||+.||..     .+.|-+..-..-+.|-++=+
T Consensus         5 ~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~   51 (216)
T COG1428           5 MVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPE   51 (216)
T ss_pred             cEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHH
Confidence            358999999999999999999999943     33444444455555554433

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.73  E-value=0.0084  Score=50.80  Aligned_cols=29  Identities=24%  Similarity=0.225  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        25 HITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999765

>PF05729 NACHT: NACHT domain

Probab=95.73  E-value=0.0083  Score=46.84  Aligned_cols=25  Identities=16%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      -+.|+|..|+||||+.+.+|..+-.
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~   26 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAE   26 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHh
Confidence            3789999999999999999987743

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=95.71  E-value=0.0085  Score=54.73  Aligned_cols=29  Identities=17%  Similarity=0.145  Sum_probs=26.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      .+++|.|++|+|||++++.+|..+|..+.
T Consensus        52 ~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         52 DHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            47999999999999999999999988653

>PRK12377 putative replication protein; Provisional

Probab=95.70  E-value=0.013  Score=53.13  Aligned_cols=40  Identities=13%  Similarity=0.265  Sum_probs=34.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFA  225 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~a  225 (261)
                      ..++||.|.+|+|||.++..+|..|   ||.  |++..++++...
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~  145 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH  145 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH
Confidence            3589999999999999999999988   664  778888888663

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.69  E-value=0.0088  Score=51.42  Aligned_cols=29  Identities=14%  Similarity=0.164  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          22 DVRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44577789999999999999999999654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=95.68  E-value=0.081  Score=38.11  Aligned_cols=70  Identities=23%  Similarity=0.320  Sum_probs=55.9

Q ss_pred             cccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccC----------------CcceeeeecccccCCCCCCceeeE
Q 024881           84 SDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS----------------GSFITLIETNQLFDKIKPTETIWY  147 (261)
Q Consensus        84 Tqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~----------------~~~~tlId~g~L~~kIk~~Et~W~  147 (261)
                      .++..++.+++.||+   .+..|+.|.+.++.|.|.-+..                +.+..-|.   |++.+.++.-.-.
T Consensus         3 ~e~~~~~~i~~~lpg---~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~---LP~~vd~~~i~a~   76 (88)
T cd06464           3 YETDDAYVVEADLPG---FKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFR---LPEDVDPDKIKAS   76 (88)
T ss_pred             EEcCCEEEEEEECCC---CCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEE---CCCCcCHHHcEEE
Confidence            456689999999999   6777999999999999986554                23433333   7888888888888


Q ss_pred             EecCeEEEEEEe
Q 024881          148 IDEDQLVINLKK  159 (261)
Q Consensus       148 IdD~~lvv~L~K  159 (261)
                      ++|+.|.|.+.|
T Consensus        77 ~~~G~L~I~~pk   88 (88)
T cd06464          77 LENGVLTITLPK   88 (88)
T ss_pred             EeCCEEEEEEcC
Confidence            999999999876

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.66  E-value=0.0094  Score=50.30  Aligned_cols=29  Identities=28%  Similarity=0.297  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        24 HIRKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45678889999999999999999998654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.63  E-value=0.0088  Score=51.23  Aligned_cols=29  Identities=14%  Similarity=0.029  Sum_probs=25.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          27 SVPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999775

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.62  E-value=0.016  Score=52.70  Aligned_cols=48  Identities=25%  Similarity=0.378  Sum_probs=38.5

Q ss_pred             chhHHHHHHHhhc-----------CCceEEEEecCCCchhHHHHHHHHhc----C-C--CccCcHH
Q 024881          172 SWESLTAGSMQLL-----------KGTSIFLVGDSTEVNEKVALELAVGL----G-Y--TPLSTKE  219 (261)
Q Consensus       172 ~We~l~~g~~~lL-----------kG~sIyLVGmmGsGKSTVGr~LA~~L----g-Y--~fvDTDe  219 (261)
                      .|+.+...+.+.|           +|..|.|+|..|+||||+...||..+    | +  .++++|.
T Consensus       169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            3777887777766           35579999999999999999999876    3 3  3788886

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.61  E-value=0.01  Score=50.20  Aligned_cols=29  Identities=17%  Similarity=0.005  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          22 TVEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578889999999999999999999654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.60  E-value=0.0093  Score=50.78  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=21.1

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|+|.|.+|+||||+.+.+++.|
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            69999999999999999999998

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd03112 CobW_like The function of this protein family is unkown

Probab=95.59  E-value=0.018  Score=47.83  Aligned_cols=22  Identities=9%  Similarity=-0.041  Sum_probs=20.0

Q ss_pred             EEEEecCCCchhHHHHHHHHhc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++|+|++|+||||+.+.|++..
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~~   24 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTEQ   24 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhcc
Confidence            6799999999999999998874

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=95.59  E-value=0.014  Score=56.37  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=23.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      .-++|+|++|+||||+++.||..|+-
T Consensus        79 ~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       79 QILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34899999999999999999999953

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.57  E-value=0.011  Score=49.83  Aligned_cols=29  Identities=21%  Similarity=0.203  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468889999999999999999999764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.57  E-value=0.011  Score=49.88  Aligned_cols=29  Identities=21%  Similarity=0.211  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34467889999999999999999999765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=95.57  E-value=0.0026  Score=63.37  Aligned_cols=57  Identities=23%  Similarity=0.236  Sum_probs=40.2

Q ss_pred             CeEEEEEEecCCCCCCcccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          151 DQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       151 ~~lvv~L~K~d~~m~Wp~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      +.|+|+=+|++.=-.|         +-....+.-.+.=+.|.|+.|+||||+.+.||+.|||..+.
T Consensus        19 ~eLavhkkKv~eV~~w---------l~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   19 DELAVHKKKVEEVRSW---------LEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             HHhhccHHHHHHHHHH---------HHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            5688888888773445         11222222223348999999999999999999999996554

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.57  E-value=0.012  Score=49.71  Aligned_cols=26  Identities=12%  Similarity=0.134  Sum_probs=24.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.++.++|.+||||||+.+.|+..+
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            58899999999999999999999776

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.56  E-value=0.011  Score=50.03  Aligned_cols=29  Identities=21%  Similarity=0.080  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          26 SIEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            34467789999999999999999999765

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=95.54  E-value=0.016  Score=53.85  Aligned_cols=41  Identities=22%  Similarity=0.277  Sum_probs=34.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~a  225 (261)
                      .+.++||.|..|+|||.++..+|..|   ||.  |+..++++.+..
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk  200 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK  200 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence            46789999999999999999999988   775  568888877764

>CHL00195 ycf46 Ycf46; Provisional

Probab=95.54  E-value=0.0091  Score=59.14  Aligned_cols=33  Identities=18%  Similarity=0.110  Sum_probs=29.2

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      ...|.|+|++|+|||.+++.+|..+|.+|+..|
T Consensus       259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~  291 (489)
T CHL00195        259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD  291 (489)
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence            345999999999999999999999999987654

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.53  E-value=0.011  Score=50.35  Aligned_cols=29  Identities=21%  Similarity=0.054  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          26 SVEEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.52  E-value=0.011  Score=49.76  Aligned_cols=29  Identities=14%  Similarity=0.043  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          22 SVEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578889999999999999999999754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.52  E-value=0.009  Score=46.48  Aligned_cols=66  Identities=15%  Similarity=0.158  Sum_probs=41.5

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCc-----------cCcHHHHHHHhCCCH---HHHHHhhCchhHHhhHHHHHHHHhc
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTP-----------LSTKELLETFAKQTI---DSWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~f-----------vDTDeLIEq~agkSI---~eIFaeeGE~~FRelEs~VLeels~  254 (261)
                      |||.|.+|.|||+.++.||+.|.-.+           =-.++.-..+.||.+   +|+-....+. -...|++.+.=++.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~~~~-~~~~~~~l~~l~s~   79 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDNDGY-NYSDESELIRLISS   79 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcccccc-chHHHHHHHHHHhc
Confidence            68999999999999999998876222           234666677777765   3333333221 12355555544444


Q ss_pred             c
Q 024881          255 F  255 (261)
Q Consensus       255 ~  255 (261)
                      +
T Consensus        80 ~   80 (107)
T PF00910_consen   80 N   80 (107)
T ss_pred             C
Confidence            3

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.50  E-value=0.012  Score=49.29  Aligned_cols=29  Identities=14%  Similarity=0.147  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        20 TIEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578889999999999999999999765

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.50  E-value=0.013  Score=50.10  Aligned_cols=29  Identities=21%  Similarity=0.062  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          22 DIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34468889999999999999999999877

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=95.49  E-value=0.023  Score=49.21  Aligned_cols=22  Identities=18%  Similarity=0.149  Sum_probs=20.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -|.|+||.|.||||+++.+++.
T Consensus        21 ~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   21 VVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             EEEEEESTTSSHHHHHHHHHCH
T ss_pred             EEEEEcCCcCCcceeeeecccc
Confidence            3999999999999999999988

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.49  E-value=0.012  Score=50.53  Aligned_cols=29  Identities=14%  Similarity=0.118  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578889999999999999999999764

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.48  E-value=0.012  Score=49.03  Aligned_cols=29  Identities=21%  Similarity=0.223  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        14 AAERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44567889999999999999999998654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.47  E-value=0.012  Score=50.41  Aligned_cols=29  Identities=17%  Similarity=0.106  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          23 SINPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45578889999999999999999999655

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.46  E-value=0.011  Score=50.60  Aligned_cols=29  Identities=14%  Similarity=0.001  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+||||||+.+.||..+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          22 SVRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            44578889999999999999999999654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.46  E-value=0.013  Score=41.25  Aligned_cols=30  Identities=27%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             EEEEecCCCchhHHHHHHHHhc---CCCccCcH
Q 024881          189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTK  218 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L---gY~fvDTD  218 (261)
                      +.+.|..|+||||++..||..|   ||+.+=.|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            5778999999999999999998   76655444

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.46  E-value=0.011  Score=48.92  Aligned_cols=29  Identities=17%  Similarity=0.050  Sum_probs=25.4

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          22 TVEKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45678889999999999999999998764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.45  E-value=0.012  Score=49.39  Aligned_cols=29  Identities=14%  Similarity=0.174  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||-.+
T Consensus        22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          22 TVKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK06921 hypothetical protein; Provisional

Probab=95.45  E-value=0.018  Score=52.29  Aligned_cols=40  Identities=20%  Similarity=0.183  Sum_probs=33.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc----CCC--ccCcHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL----GYT--PLSTKELLETF  224 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L----gY~--fvDTDeLIEq~  224 (261)
                      .+.++||.|..|+|||.++..+|..+    |+.  |+...+++++.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l  161 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL  161 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH
Confidence            47789999999999999999999876    564  67777777664

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.44  E-value=0.013  Score=49.98  Aligned_cols=29  Identities=17%  Similarity=0.147  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34478889999999999999999999754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.44  E-value=0.013  Score=49.73  Aligned_cols=29  Identities=21%  Similarity=0.180  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          24 NVYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44577789999999999999999999765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=95.43  E-value=0.012  Score=61.22  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      ..+|..|+|+|++|+||||+++.+|+.+|..|+
T Consensus       346 ~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~  378 (784)
T PRK10787        346 KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV  378 (784)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            357889999999999999999999999998885

>PRK07429 phosphoribulokinase; Provisional

Probab=95.42  E-value=0.0079  Score=56.56  Aligned_cols=35  Identities=26%  Similarity=0.141  Sum_probs=29.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCC---CccCcHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGY---TPLSTKELL  221 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY---~fvDTDeLI  221 (261)
                      .-|-+.|.+||||||+++.|+..||.   ..++.|++.
T Consensus         9 ~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          9 VLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            35889999999999999999999984   456777764

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.41  E-value=0.0077  Score=54.91  Aligned_cols=32  Identities=22%  Similarity=0.181  Sum_probs=27.0

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC---CCccCcHHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG---YTPLSTKEL  220 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg---Y~fvDTDeL  220 (261)
                      |-|+|.+||||||+++.|+..|+   ...++.|++
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~   36 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY   36 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence            57899999999999999999884   456777765

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.41  E-value=0.013  Score=50.43  Aligned_cols=29  Identities=10%  Similarity=0.099  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        24 NINPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45578889999999999999999999654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd01394 radB RadB

Probab=95.40  E-value=0.023  Score=48.25  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=31.8

Q ss_pred             HHHHhhc-----CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHH
Q 024881          178 AGSMQLL-----KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKE  219 (261)
Q Consensus       178 ~g~~~lL-----kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDe  219 (261)
                      .|+-++|     +|.-+-+.|.+|+|||+++..+|..+   |++  |+|+++
T Consensus         6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~   57 (218)
T cd01394           6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG   57 (218)
T ss_pred             hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            3455555     36668899999999999999999765   555  787764

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.40  E-value=0.013  Score=49.32  Aligned_cols=29  Identities=17%  Similarity=0.077  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          22 DIADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468889999999999999999999765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=95.40  E-value=0.013  Score=49.97  Aligned_cols=29  Identities=24%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         32 VVKRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            33478889999999999999999999765

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.39  E-value=0.013  Score=49.64  Aligned_cols=29  Identities=14%  Similarity=0.145  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          22 TVPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578889999999999999999998654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.38  E-value=0.013  Score=50.53  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         24 DCPQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999654

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.37  E-value=0.013  Score=49.96  Aligned_cols=29  Identities=10%  Similarity=0.068  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578889999999999999999999654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.37  E-value=0.012  Score=49.68  Aligned_cols=29  Identities=14%  Similarity=0.130  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          21 EVKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            44578889999999999999999998764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=95.37  E-value=0.012  Score=60.68  Aligned_cols=27  Identities=19%  Similarity=0.209  Sum_probs=24.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ++..+||+|++|+||||+++.||++|.
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHHH
Confidence            556799999999999999999999873

>PRK04296 thymidine kinase; Provisional

Probab=95.35  E-value=0.014  Score=49.80  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=22.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |.-++++|+||+||||.+..+|.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            6678899999999999999999887

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.34  E-value=0.014  Score=50.35  Aligned_cols=29  Identities=14%  Similarity=0.067  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        23 TVRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            44578889999999999999999999654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.34  E-value=0.013  Score=50.01  Aligned_cols=29  Identities=17%  Similarity=0.138  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45588899999999999999999999654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=95.34  E-value=0.021  Score=49.59  Aligned_cols=40  Identities=18%  Similarity=0.028  Sum_probs=29.5

Q ss_pred             hhHHHHHHHhhcCC----ceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          173 WESLTAGSMQLLKG----TSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       173 We~l~~g~~~lLkG----~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      -+.|..-+...+.+    .-|.|.|.+||||||+++.|+..|..
T Consensus        16 ~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~   59 (229)
T PRK09270         16 HKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ   59 (229)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            34444445544333    24889999999999999999999865

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.33  E-value=0.015  Score=48.39  Aligned_cols=29  Identities=17%  Similarity=0.079  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          22 NIEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578889999999999999999999653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.33  E-value=0.015  Score=54.29  Aligned_cols=53  Identities=21%  Similarity=0.184  Sum_probs=37.1

Q ss_pred             EecCCCCCCcccccchhHHHHHHHhhcCCc---e-EEEEecCCCchhHHHHHHHHhcCC
Q 024881          158 KKQDPELKWPDIVESWESLTAGSMQLLKGT---S-IFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLkG~---s-IyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      +|+-| +.|-||+ -=+.+++.+.+.++.-   + +.|.|+.|+||||+++.+|+.|+.
T Consensus         8 ~kyrP-~~~~~ii-Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961          8 RKWRP-QYFRDII-GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             HHhCC-Cchhhcc-ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            35555 6665655 2244555555555432   3 579999999999999999999974

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=95.33  E-value=0.01  Score=50.34  Aligned_cols=40  Identities=20%  Similarity=0.116  Sum_probs=25.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCc----HHHHHHHhCC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST----KELLETFAKQ  227 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT----DeLIEq~agk  227 (261)
                      +|.|.|.+|.|||++++.||+.+|..|-+-    |-+..-+.|-
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~   44 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGF   44 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceee
Confidence            578999999999999999999999998743    4444444444

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.32  E-value=0.016  Score=53.21  Aligned_cols=41  Identities=17%  Similarity=0.195  Sum_probs=32.6

Q ss_pred             ccchhHHHHHHHhhcCC---ceEEEEecCCCchhHHHHHHHHhc
Q 024881          170 VESWESLTAGSMQLLKG---TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       170 ~e~We~l~~g~~~lLkG---~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-.+.+...+...++|   .+++|.|++|+|||++.+.+++.+
T Consensus        36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            44556677776666543   679999999999999999999876

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.32  E-value=0.014  Score=49.31  Aligned_cols=29  Identities=21%  Similarity=0.061  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            44568889999999999999999999764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd01858 NGP_1 NGP-1

Probab=95.30  E-value=0.036  Score=44.93  Aligned_cols=36  Identities=19%  Similarity=0.044  Sum_probs=27.6

Q ss_pred             hhHHHHHHHhhc------CCceEEEEecCCCchhHHHHHHHH
Q 024881          173 WESLTAGSMQLL------KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       173 We~l~~g~~~lL------kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      -+.|...+.+.+      ++.+|+++|++|+||||+-..|..
T Consensus        83 ~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~  124 (157)
T cd01858          83 KGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS  124 (157)
T ss_pred             HHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence            344555555553      467899999999999999999975

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.30  E-value=0.015  Score=49.06  Aligned_cols=29  Identities=28%  Similarity=0.234  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          22 DLYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34568889999999999999999999764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=95.29  E-value=0.016  Score=52.11  Aligned_cols=52  Identities=19%  Similarity=0.305  Sum_probs=39.7

Q ss_pred             EecCCCCCCcccccchhHHHHHHHhhcC-Cc--e-EEEEecCCCchhHHHHHHHHhcC
Q 024881          158 KKQDPELKWPDIVESWESLTAGSMQLLK-GT--S-IFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLk-G~--s-IyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +|..+ |.|.||+ -.+.+...+.+.++ |.  + +.|.|+.|.|||++++.||+.|.
T Consensus         6 ~~~rp-~~~~~ii-g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397         6 RKYRP-QTFEDVI-GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             HHhCC-CcHhhcc-CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46667 8887775 46666777766664 32  3 56899999999999999999985

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.28  E-value=0.015  Score=50.06  Aligned_cols=28  Identities=18%  Similarity=0.074  Sum_probs=24.3

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+.+.||..+
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467789999999999999999999754

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.27  E-value=0.015  Score=49.29  Aligned_cols=29  Identities=28%  Similarity=0.294  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          27 SIKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578899999999999999999999654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.27  E-value=0.013  Score=47.71  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=26.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI  221 (261)
                      .|.-+.|+|.+|+||||+.+.|.  -|.-.++.|++.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~   48 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNV   48 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence            46779999999999999999998  333445555553

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=95.27  E-value=0.019  Score=52.53  Aligned_cols=33  Identities=12%  Similarity=-0.008  Sum_probs=24.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCc-cCcHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELL  221 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~f-vDTDeLI  221 (261)
                      -|.++||+|||||||++.+.+ .|+.. +..-+-|
T Consensus         2 iI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~i   35 (227)
T PHA02575          2 LIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPI   35 (227)
T ss_pred             EEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHH
Confidence            488999999999999998855 45555 4433333

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=95.27  E-value=0.013  Score=57.93  Aligned_cols=33  Identities=15%  Similarity=0.026  Sum_probs=29.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL  220 (261)
                      |..|-|++|+||||+|+.||+..++.|.-...+
T Consensus        50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv   82 (436)
T COG2256          50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAV   82 (436)
T ss_pred             eeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence            689999999999999999999999999755443

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.26  E-value=0.014  Score=49.26  Aligned_cols=28  Identities=21%  Similarity=0.052  Sum_probs=23.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+| .+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          22 TLGPG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             EEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            34457 79999999999999999999654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=95.26  E-value=0.017  Score=46.40  Aligned_cols=31  Identities=23%  Similarity=0.207  Sum_probs=27.2

Q ss_pred             EEEEecCCCchhHHHHHHHHhc---CCCc--cCcHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGL---GYTP--LSTKE  219 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTDe  219 (261)
                      |.+.|..|+||||++..||+.|   |++.  +|+|.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence            7899999999999999999877   7755  78886

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.25  E-value=0.016  Score=49.16  Aligned_cols=29  Identities=21%  Similarity=0.099  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468889999999999999999998764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=95.24  E-value=0.015  Score=50.07  Aligned_cols=29  Identities=10%  Similarity=0.113  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         23 NIDQGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.24  E-value=0.014  Score=53.16  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=27.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc---CCCc--cCcH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTK  218 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTD  218 (261)
                      +..|.|+|..|+||||++..||..|   |++.  +|+|
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D  109 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD  109 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3458899999999999999999887   7654  6776

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK06620 hypothetical protein; Validated

Probab=95.24  E-value=0.017  Score=50.61  Aligned_cols=35  Identities=6%  Similarity=-0.112  Sum_probs=29.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI  221 (261)
                      .++||.|+.|+|||++++.+|+..+..++.-....
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~   79 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFN   79 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhc
Confidence            45999999999999999999999998776644433

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.23  E-value=0.016  Score=50.45  Aligned_cols=29  Identities=14%  Similarity=0.095  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         25 KFEGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999764

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=95.22  E-value=0.026  Score=51.82  Aligned_cols=37  Identities=14%  Similarity=0.193  Sum_probs=32.5

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag  226 (261)
                      |-|.|-.|+|||||.+.+- ++|++.+|+|.+--++-.
T Consensus         4 VGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~   40 (225)
T KOG3220|consen    4 VGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVE   40 (225)
T ss_pred             EEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhc
Confidence            4467778899999999997 999999999999888775

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.22  E-value=0.016  Score=50.10  Aligned_cols=29  Identities=17%  Similarity=0.089  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          24 DIPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34467789999999999999999999754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.21  E-value=0.016  Score=50.50  Aligned_cols=29  Identities=17%  Similarity=0.151  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        22 SVAAGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34478889999999999999999999654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.20  E-value=0.016  Score=50.09  Aligned_cols=29  Identities=10%  Similarity=0.119  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-+|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         25 EVKPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578889999999999999999999654

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.19  E-value=0.016  Score=49.95  Aligned_cols=29  Identities=10%  Similarity=0.027  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34478889999999999999999999765

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=95.19  E-value=0.15  Score=38.58  Aligned_cols=72  Identities=22%  Similarity=0.230  Sum_probs=54.7

Q ss_pred             eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC-------------------cceeeeecccccCCCCC
Q 024881           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG-------------------SFITLIETNQLFDKIKP  141 (261)
Q Consensus        81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~-------------------~~~tlId~g~L~~kIk~  141 (261)
                      -.+.++...+.|++.||+   .+..||.|++.++.|.|..++..                   .+..-|   .|. .|.+
T Consensus         3 ~di~e~~~~~~i~~~lPG---v~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~---~lp-~v~~   75 (93)
T cd06471           3 TDIKETDDEYIVEADLPG---FKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSF---YLP-NVDE   75 (93)
T ss_pred             eeEEEcCCEEEEEEECCC---CCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEE---ECC-CCCH
Confidence            356678899999999998   67899999999999999776542                   122222   243 5777


Q ss_pred             CceeeEEecCeEEEEEEe
Q 024881          142 TETIWYIDEDQLVINLKK  159 (261)
Q Consensus       142 ~Et~W~IdD~~lvv~L~K  159 (261)
                      +.-.-..+|..|.|.|.|
T Consensus        76 ~~i~A~~~dGvL~I~lPK   93 (93)
T cd06471          76 EEIKAKYENGVLKITLPK   93 (93)
T ss_pred             HHCEEEEECCEEEEEEcC
Confidence            777778888999998876

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.18  E-value=0.017  Score=50.25  Aligned_cols=30  Identities=13%  Similarity=-0.033  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..++
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14242         28 EFEQNQVTALIGPSGCGKSTFLRCLNRMND   57 (253)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            445777899999999999999999997543

>PRK08084 DNA replication initiation factor; Provisional

Probab=95.18  E-value=0.02  Score=50.40  Aligned_cols=27  Identities=11%  Similarity=0.091  Sum_probs=23.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .+.++||.|+.|+|||++++.+|..+.
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~   70 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELS   70 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999998765

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.17  E-value=0.017  Score=48.51  Aligned_cols=28  Identities=11%  Similarity=0.094  Sum_probs=24.8

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         23 FLPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478889999999999999999999875

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.16  E-value=0.018  Score=49.07  Aligned_cols=25  Identities=28%  Similarity=0.157  Sum_probs=23.3

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      |+.|+|++|+|||.+++.||+.|+-
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            6899999999999999999999993

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.14  E-value=0.015  Score=51.08  Aligned_cols=23  Identities=22%  Similarity=0.096  Sum_probs=20.9

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      |-|.|.+||||||+++.|+..|.
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHh
Confidence            56889999999999999999984

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.14  E-value=0.018  Score=48.40  Aligned_cols=29  Identities=21%  Similarity=0.107  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        22 TLNAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34577789999999999999999998764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK15453 phosphoribulokinase; Provisional

Probab=95.13  E-value=0.017  Score=54.48  Aligned_cols=37  Identities=14%  Similarity=0.047  Sum_probs=29.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLI  221 (261)
                      ++..|-+.|.+||||||+++.||+.|+     -.+++.|.+=
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh   45 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH   45 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence            455799999999999999999999775     2346666543

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=95.13  E-value=0.017  Score=50.72  Aligned_cols=29  Identities=10%  Similarity=0.044  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44577889999999999999999999765

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.13  E-value=0.018  Score=48.51  Aligned_cols=29  Identities=10%  Similarity=0.015  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          22 HVKKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            44578889999999999999999999654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=95.12  E-value=0.014  Score=59.07  Aligned_cols=29  Identities=34%  Similarity=0.315  Sum_probs=26.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++.+|..+-|||.+||||||+||.||..+
T Consensus       313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~  341 (539)
T COG1123         313 DLREGETLGLVGESGSGKSTLARILAGLL  341 (539)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            67788999999999999999999999766

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.12  E-value=0.017  Score=50.16  Aligned_cols=29  Identities=14%  Similarity=0.019  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300         27 EVREQEIVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence            44578889999999999999999999653

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=95.11  E-value=0.024  Score=56.55  Aligned_cols=54  Identities=17%  Similarity=0.172  Sum_probs=40.1

Q ss_pred             EecCCCCCCcccccchhHHHHHHHh-hcCCc---eEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          158 KKQDPELKWPDIVESWESLTAGSMQ-LLKGT---SIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~We~l~~g~~~-lLkG~---sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      +|+.| ..|-|++ .-+.+++.+.. ..+|.   .+.|.|+.|+||||+++.+|+.|++.
T Consensus        13 ~kyRP-~~f~dli-Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         13 RKYRP-SNFAELQ-GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             hhhCC-CCHHHhc-CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            45666 6665554 34566666666 34554   58899999999999999999999874

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=95.10  E-value=0.02  Score=56.18  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=27.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC--CCccC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLS  216 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvD  216 (261)
                      ..+.|+-|.|+|++|+|||++|-.+|+.||  .+|+.
T Consensus        46 ~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~   82 (398)
T PF06068_consen   46 GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS   82 (398)
T ss_dssp             T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred             ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence            456799999999999999999999999999  66654

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=95.07  E-value=0.019  Score=50.33  Aligned_cols=29  Identities=17%  Similarity=0.072  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619         27 QANAGDVISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34478889999999999999999999775

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.06  E-value=0.019  Score=49.50  Aligned_cols=29  Identities=7%  Similarity=-0.182  Sum_probs=24.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|.-+.|+|.+|+||||+.+.||..+
T Consensus         9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177          9 VMGYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34568889999999999999999999654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.05  E-value=0.02  Score=47.70  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          21 SIEAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34478889999999999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.05  E-value=0.019  Score=49.00  Aligned_cols=29  Identities=28%  Similarity=0.147  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          36 TLHPGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            45578889999999999999999999765

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.05  E-value=0.019  Score=49.81  Aligned_cols=29  Identities=14%  Similarity=0.072  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         25 EIPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            44578889999999999999999999765

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.04  E-value=0.02  Score=50.24  Aligned_cols=29  Identities=10%  Similarity=0.036  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~   57 (259)
T PRK14260         29 DIYRNKVTAIIGPSGCGKSTFIKTLNRIS   57 (259)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            44478889999999999999999999764

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=95.04  E-value=0.019  Score=52.20  Aligned_cols=42  Identities=24%  Similarity=0.221  Sum_probs=31.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCC---ccCcHHHHHHHhCCC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFAKQT  228 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~---fvDTDeLIEq~agkS  228 (261)
                      .=|-+.|.+|||||||++.|++.||=.   .+..|.+......++
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~   53 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLP   53 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcC
Confidence            346678999999999999999999944   666666665444444

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=95.04  E-value=0.028  Score=50.90  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=31.5

Q ss_pred             ccchhHHHHHHHhhcCC---ceEEEEecCCCchhHHHHHHHHhc
Q 024881          170 VESWESLTAGSMQLLKG---TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       170 ~e~We~l~~g~~~lLkG---~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+..+.+..-+...+.|   .++||.|++|+|||++.+.+++.|
T Consensus        21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928        21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            34455566666655544   579999999999999999999876

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.03  E-value=0.021  Score=50.04  Aligned_cols=29  Identities=10%  Similarity=0.093  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-+|..+.|+|.+|+||||+.+.||..+
T Consensus        34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         34 SIPENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34578889999999999999999999765

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.03  E-value=0.022  Score=49.56  Aligned_cols=30  Identities=7%  Similarity=-0.028  Sum_probs=25.4

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ++-+|..+.|+|.+|+||||+.+.||...|
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14245         25 EIEEKSVVAFIGPSGCGKSTFLRLFNRMND   54 (250)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhhhhc
Confidence            345688899999999999999999996544

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.02  E-value=0.019  Score=49.09  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=29.0

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      ..|+-|.++|++|+||||++..|.++ |++++.-|
T Consensus        12 ~~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD   45 (149)
T cd01918          12 VGGIGVLITGPSGIGKSELALELIKR-GHRLVADD   45 (149)
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence            45888999999999999999999886 78887544

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK08116 hypothetical protein; Validated

Probab=95.02  E-value=0.029  Score=50.92  Aligned_cols=39  Identities=21%  Similarity=0.228  Sum_probs=32.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETF  224 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~  224 (261)
                      +..+||.|..|+|||.++..+|+.|   |++  |++.++++.++
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i  157 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI  157 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            4569999999999999999999986   665  56778877755

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.01  E-value=0.021  Score=48.24  Aligned_cols=28  Identities=21%  Similarity=0.137  Sum_probs=24.5

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +=+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478889999999999999999998765

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.00  E-value=0.02  Score=50.69  Aligned_cols=29  Identities=17%  Similarity=0.083  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         23 TLESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.00  E-value=0.02  Score=49.67  Aligned_cols=29  Identities=14%  Similarity=-0.079  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         26 DFEEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            44578889999999999999999999654

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=95.00  E-value=0.027  Score=58.70  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=29.3

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLE  222 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIE  222 (261)
                      ++.|+|++|+|||.+++.||+.||.+|+  |..++.|
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~  526 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME  526 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcc
Confidence            5899999999999999999999998875  4444433

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=94.99  E-value=0.02  Score=49.31  Aligned_cols=29  Identities=17%  Similarity=0.159  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         21 TVERGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999998753

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.98  E-value=0.031  Score=54.18  Aligned_cols=48  Identities=17%  Similarity=0.234  Sum_probs=37.7

Q ss_pred             chhHHHHHHHhhcC---------CceEEEEecCCCchhHHHHHHHHhc-----C--CCccCcHH
Q 024881          172 SWESLTAGSMQLLK---------GTSIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKE  219 (261)
Q Consensus       172 ~We~l~~g~~~lLk---------G~sIyLVGmmGsGKSTVGr~LA~~L-----g--Y~fvDTDe  219 (261)
                      .|..+...+.+.|.         |..|.|||+.|+||||++..||.++     |  -.++|+|.
T Consensus       198 ~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~  261 (424)
T PRK05703        198 AWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT  261 (424)
T ss_pred             HHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence            57788877777663         6689999999999999999998754     2  34677876

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=94.98  E-value=0.042  Score=55.62  Aligned_cols=29  Identities=17%  Similarity=0.195  Sum_probs=26.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      .|.+++|+|++|+|||++++.||+.|+-.
T Consensus        36 ~~~~~ll~G~pG~GKT~la~~la~~l~~~   64 (608)
T TIGR00764        36 QKRNVLLIGEPGVGKSMLAKAMAELLPDE   64 (608)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence            46689999999999999999999999765

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.96  E-value=0.022  Score=47.05  Aligned_cols=29  Identities=14%  Similarity=0.116  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          22 SVRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578889999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=94.95  E-value=0.02  Score=48.93  Aligned_cols=29  Identities=17%  Similarity=0.165  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||..+.||..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          24 DIPAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44578889999999999999999999765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=94.95  E-value=0.02  Score=48.85  Aligned_cols=29  Identities=14%  Similarity=0.122  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          25 SIKPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            55678889999999999999999999765

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=94.94  E-value=0.021  Score=49.54  Aligned_cols=29  Identities=17%  Similarity=0.046  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        23 DIPKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            44578889999999999999999999665

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PTZ00301 uridine kinase; Provisional

Probab=94.94  E-value=0.019  Score=50.72  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=20.1

Q ss_pred             EEEEecCCCchhHHHHHHHHhc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |-+.|.+||||||+++.|+++|
T Consensus         6 IgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          6 IGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEECCCcCCHHHHHHHHHHHH
Confidence            6788999999999999999887

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=94.94  E-value=0.021  Score=49.18  Aligned_cols=27  Identities=15%  Similarity=0.068  Sum_probs=24.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|..+.|+|.+|+||||+.+.||..+
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999999754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=94.93  E-value=0.021  Score=49.97  Aligned_cols=29  Identities=14%  Similarity=0.000  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            34578889999999999999999999754

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.93  E-value=0.021  Score=49.49  Aligned_cols=29  Identities=10%  Similarity=0.062  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         25 KIFKNQITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             eecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44578889999999999999999999654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=94.92  E-value=0.023  Score=48.79  Aligned_cols=29  Identities=24%  Similarity=0.171  Sum_probs=25.4

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          25 TIPPGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             EecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            45578889999999999999999999664

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=94.92  E-value=0.022  Score=49.31  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          23 EIAKGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45578889999999999999999999654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=94.91  E-value=0.02  Score=52.93  Aligned_cols=29  Identities=24%  Similarity=0.156  Sum_probs=25.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|||.+|+||||+++.|+..+
T Consensus        29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         29 TLTEGEIRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence            45578889999999999999999999876

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=94.91  E-value=0.022  Score=49.90  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=25.4

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         28 DLYPGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578889999999999999999999765

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.019  Score=56.19  Aligned_cols=33  Identities=21%  Similarity=0.181  Sum_probs=29.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      .||.|||+.|||||-+|+-||+.|+-+|-=+|.
T Consensus        98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA  130 (408)
T COG1219          98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADA  130 (408)
T ss_pred             ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence            389999999999999999999999999976654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=94.89  E-value=0.02  Score=48.79  Aligned_cols=30  Identities=13%  Similarity=0.136  Sum_probs=26.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +.-+|..+.|+|.+|+||||+.+.||..+-
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          29 VVKPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            445788899999999999999999998764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=94.89  E-value=0.023  Score=47.99  Aligned_cols=29  Identities=17%  Similarity=0.048  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          20 TFAQGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55688899999999999999999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=94.89  E-value=0.022  Score=49.35  Aligned_cols=28  Identities=11%  Similarity=0.069  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         27 DFYPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            3457888999999999999999999865

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=94.88  E-value=0.022  Score=49.48  Aligned_cols=29  Identities=28%  Similarity=0.247  Sum_probs=25.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        25 DLYPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999875

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=94.88  E-value=0.019  Score=47.55  Aligned_cols=29  Identities=17%  Similarity=0.184  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          23 EIKPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55678889999999999999999999765

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.88  E-value=0.025  Score=42.56  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .|+++|..|+||||+-+.|+..-
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998654

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK10908 cell division protein FtsE; Provisional

Probab=94.87  E-value=0.023  Score=48.43  Aligned_cols=29  Identities=17%  Similarity=0.126  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         24 HMRPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34478889999999999999999998654

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=94.87  E-value=0.024  Score=47.02  Aligned_cols=29  Identities=28%  Similarity=0.303  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          24 ELKQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            44578889999999999999999999764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.86  E-value=0.023  Score=50.17  Aligned_cols=29  Identities=14%  Similarity=-0.007  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         43 DIEKHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            44577889999999999999999999754

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.86  E-value=0.023  Score=48.60  Aligned_cols=25  Identities=8%  Similarity=0.045  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .+|.|+|++|+||||+-+.|++.++
T Consensus        23 ~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        23 VVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3699999999999999999998865

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=94.86  E-value=0.021  Score=49.52  Aligned_cols=28  Identities=14%  Similarity=0.132  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         29 SINKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            4457888999999999999999999974

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.83  E-value=0.022  Score=50.53  Aligned_cols=29  Identities=17%  Similarity=0.063  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         23 DFSLSPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            44578889999999999999999998654

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=94.83  E-value=0.021  Score=54.87  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|..+.+||.+||||||+.+.|+...
T Consensus       357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       357 DLPPGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45577889999999999999999998654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.83  E-value=0.023  Score=49.59  Aligned_cols=29  Identities=21%  Similarity=0.110  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         29 KILKNSITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45578889999999999999999999765

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=94.83  E-value=0.024  Score=48.68  Aligned_cols=29  Identities=14%  Similarity=0.111  Sum_probs=25.4

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            44578889999999999999999999665

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=94.83  E-value=0.024  Score=48.78  Aligned_cols=29  Identities=17%  Similarity=0.085  Sum_probs=24.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         29 SLRAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34467889999999999999999999643

>cd01131 PilT Pilus retraction ATPase PilT

Probab=94.83  E-value=0.024  Score=48.56  Aligned_cols=23  Identities=4%  Similarity=0.105  Sum_probs=21.1

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      |.++|.+||||||+.+.|+..+.
T Consensus         4 ilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            88999999999999999888875

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=94.82  E-value=0.029  Score=58.11  Aligned_cols=34  Identities=18%  Similarity=0.025  Sum_probs=30.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL  220 (261)
                      .+++|.|++|+||||+++.+|+.++..|+-.+..
T Consensus        53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~   86 (725)
T PRK13341         53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV   86 (725)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence            4899999999999999999999999887766654

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=94.82  E-value=0.023  Score=48.91  Aligned_cols=28  Identities=29%  Similarity=0.318  Sum_probs=24.8

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+.+.||..+
T Consensus         9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770         9 LKRGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4478889999999999999999999765

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=94.81  E-value=0.022  Score=48.81  Aligned_cols=36  Identities=8%  Similarity=0.120  Sum_probs=28.9

Q ss_pred             HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +..++. ++-+|..+.|+|.+|+||||+.+.|+..+-
T Consensus        22 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            344433 566888899999999999999999997664

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.81  E-value=0.024  Score=49.41  Aligned_cols=29  Identities=14%  Similarity=-0.025  Sum_probs=24.7

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +-+|..+.|+|.+|+||||+.+.||..++
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14261         29 IPKNRVTALIGPSGCGKSTLLRCFNRMND   57 (253)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence            34688899999999999999999996543

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.80  E-value=0.024  Score=49.26  Aligned_cols=29  Identities=14%  Similarity=0.066  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         26 KIPQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            45578889999999999999999999765

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=94.80  E-value=0.025  Score=46.78  Aligned_cols=29  Identities=17%  Similarity=0.126  Sum_probs=25.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45578889999999999999999999875

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=94.80  E-value=0.023  Score=50.39  Aligned_cols=29  Identities=10%  Similarity=0.092  Sum_probs=24.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         29 TVPRGKITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33467789999999999999999999765

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.80  E-value=0.022  Score=48.18  Aligned_cols=29  Identities=17%  Similarity=0.035  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999764

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=94.80  E-value=0.025  Score=49.17  Aligned_cols=24  Identities=29%  Similarity=0.246  Sum_probs=21.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      -|.|||+.|+||||....||.++.
T Consensus         3 vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCchHhHHHHHHHHHh
Confidence            489999999999999999998774

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=94.79  E-value=0.025  Score=48.18  Aligned_cols=29  Identities=17%  Similarity=0.170  Sum_probs=25.4

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        30 TVNAGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999765

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.78  E-value=0.025  Score=47.18  Aligned_cols=29  Identities=14%  Similarity=-0.003  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          22 EVRAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468889999999999999999999765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.78  E-value=0.029  Score=57.07  Aligned_cols=50  Identities=18%  Similarity=0.138  Sum_probs=38.2

Q ss_pred             ccchhHHHHHHHhhc---------CCceEEEEecCCCchhHHHHHHHHhc-------CCCccCcHH
Q 024881          170 VESWESLTAGSMQLL---------KGTSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKE  219 (261)
Q Consensus       170 ~e~We~l~~g~~~lL---------kG~sIyLVGmmGsGKSTVGr~LA~~L-------gY~fvDTDe  219 (261)
                      .+.|..+..-+.+.|         +|..|.|||..|+||||+...||.++       ...++++|.
T Consensus       325 ~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt  390 (559)
T PRK12727        325 HRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT  390 (559)
T ss_pred             hhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence            345777777776644         67889999999999999999999764       134677775

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.78  E-value=0.025  Score=49.17  Aligned_cols=30  Identities=13%  Similarity=-0.035  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+.
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (252)
T PRK14255         27 DFNQNEITALIGPSGCGKSTYLRTLNRMND   56 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            345788899999999999999999997543

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=94.77  E-value=0.026  Score=47.83  Aligned_cols=29  Identities=17%  Similarity=0.202  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||..+.||..+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          26 SIKPGEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45578889999999999999999998653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=94.77  E-value=0.02  Score=53.21  Aligned_cols=24  Identities=33%  Similarity=0.266  Sum_probs=22.1

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      |.|.|.+||||||.+++||+.|.=
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~~   27 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELRQ   27 (261)
T ss_pred             EEEecCCCCCchHHHHHHHHHHHH
Confidence            789999999999999999999843

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=94.76  E-value=0.024  Score=50.53  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++|++.||+|+||||+.+.+|..|
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L   29 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKL   29 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHH
Confidence            589999999999999999999655

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.75  E-value=0.026  Score=48.20  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             EECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=94.75  E-value=0.026  Score=47.96  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=25.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||..+.||..+
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        20 NVADGEIVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45578899999999999999999999764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=94.74  E-value=0.028  Score=46.54  Aligned_cols=29  Identities=21%  Similarity=0.195  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          24 SIEPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            34568889999999999999999999754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=94.74  E-value=0.026  Score=50.03  Aligned_cols=27  Identities=19%  Similarity=-0.007  Sum_probs=23.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|..+.|+|.+|+||||+.+.||..+
T Consensus        44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         44 EKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            357779999999999999999999765

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=94.74  E-value=0.027  Score=47.75  Aligned_cols=35  Identities=11%  Similarity=0.053  Sum_probs=28.1

Q ss_pred             HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.+++. ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            344443 55688889999999999999999999764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.74  E-value=0.026  Score=49.14  Aligned_cols=29  Identities=10%  Similarity=0.035  Sum_probs=25.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         26 DFPENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            34578889999999999999999999876

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.74  E-value=0.04  Score=53.27  Aligned_cols=39  Identities=18%  Similarity=0.110  Sum_probs=30.0

Q ss_pred             chhHHHHHHHhhc----------CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          172 SWESLTAGSMQLL----------KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       172 ~We~l~~g~~~lL----------kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -|+.+...+.+.+          ++..|.|||..|+||||+...||.++
T Consensus       150 v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        150 VRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             HHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4666655555443          35679999999999999999999876

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=94.74  E-value=0.042  Score=51.45  Aligned_cols=47  Identities=19%  Similarity=0.105  Sum_probs=34.2

Q ss_pred             hhHHHHHHHhhcC------------CceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHH
Q 024881          173 WESLTAGSMQLLK------------GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKE  219 (261)
Q Consensus       173 We~l~~g~~~lLk------------G~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDe  219 (261)
                      ++.|..-+.++|.            |.-|.|||.+|+||||+.+.||..+   |+.  .+|+|-
T Consensus        89 ~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~  152 (318)
T PRK10416         89 KELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT  152 (318)
T ss_pred             HHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence            4555555555553            5568999999999999999999887   553  355553

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.72  E-value=0.023  Score=50.90  Aligned_cols=29  Identities=7%  Similarity=0.014  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44567789999999999999999999765

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.71  E-value=0.027  Score=49.04  Aligned_cols=29  Identities=14%  Similarity=-0.041  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||-.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         24 QIEQNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44577889999999999999999999654

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=94.71  E-value=0.027  Score=43.09  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      |.+|.|+|.+|+||||+...|..
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~   23 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAG   23 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHC
Confidence            67899999999999999988864

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=94.71  E-value=0.023  Score=52.55  Aligned_cols=30  Identities=17%  Similarity=0.213  Sum_probs=25.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ++=+|..+-|||.+||||||+++.|+..+.
T Consensus        29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         29 SVKQGEVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            455677799999999999999999998764

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=94.71  E-value=0.026  Score=48.59  Aligned_cols=29  Identities=7%  Similarity=-0.004  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        24 YVDPGELRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34477789999999999999999999754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=94.71  E-value=0.026  Score=48.40  Aligned_cols=29  Identities=24%  Similarity=0.169  Sum_probs=24.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++=+|..+.|+|.+|+||||+.+.||..+
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            34468889999999999999999999654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.70  E-value=0.027  Score=49.02  Aligned_cols=29  Identities=14%  Similarity=-0.027  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         26 PIYENKITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            34478889999999999999999999653

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=94.70  E-value=0.026  Score=50.20  Aligned_cols=29  Identities=17%  Similarity=0.054  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         29 TVPGGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44478889999999999999999999664

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=94.70  E-value=0.035  Score=49.83  Aligned_cols=42  Identities=17%  Similarity=0.135  Sum_probs=34.3

Q ss_pred             cCC-ceEEEEecCCCchhHHHHHHHHhc-CCCccCcHHHHHHHh
Q 024881          184 LKG-TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFA  225 (261)
Q Consensus       184 LkG-~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLIEq~a  225 (261)
                      ++| +-+.++|-+|+|||||-+.+.+.| +|..+.--++.=..+
T Consensus         1 mk~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A   44 (189)
T COG2019           1 MKGRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIA   44 (189)
T ss_pred             CCCceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHH
Confidence            355 468999999999999999999999 888888766654444

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.69  E-value=0.026  Score=50.37  Aligned_cols=29  Identities=10%  Similarity=0.056  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~   54 (277)
T PRK13652         26 IAPRNSRIAVIGPNGAGKSTLFRHFNGIL   54 (277)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45578889999999999999999999654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.68  E-value=0.028  Score=47.80  Aligned_cols=29  Identities=21%  Similarity=0.202  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         24 TLAAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44478889999999999999999999864

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=94.68  E-value=0.024  Score=52.62  Aligned_cols=29  Identities=24%  Similarity=0.244  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|||.+|+||||+++.|+..+
T Consensus        37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~   65 (327)
T PRK11308         37 TLERGKTLAVVGESGCGKSTLARLLTMIE   65 (327)
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            44568889999999999999999999765

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.68  E-value=0.026  Score=48.95  Aligned_cols=29  Identities=17%  Similarity=0.085  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (252)
T PRK14272         26 DVQRGTVNALIGPSGCGKTTFLRAINRMH   54 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            44578889999999999999999999875

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=94.68  E-value=0.024  Score=50.05  Aligned_cols=28  Identities=14%  Similarity=0.087  Sum_probs=24.2

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+.+.||..+
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3468889999999999999999999654

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=94.68  E-value=0.024  Score=48.08  Aligned_cols=29  Identities=17%  Similarity=0.132  Sum_probs=26.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (200)
T cd03217          22 TIKKGEVHALMGPNGSGKSTLAKTIMGHP   50 (200)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            56688899999999999999999999764

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=94.68  E-value=0.027  Score=49.37  Aligned_cols=29  Identities=24%  Similarity=0.176  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         25 TLQRGRVLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999764

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.67  E-value=0.028  Score=48.95  Aligned_cols=30  Identities=10%  Similarity=-0.044  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .+-+|..+.|+|.+|+||||+.+.||..+.
T Consensus        27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~   56 (251)
T PRK14244         27 DIYKREVTAFIGPSGCGKSTFLRCFNRMND   56 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            345788899999999999999999997654

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=94.67  E-value=0.34  Score=37.09  Aligned_cols=65  Identities=20%  Similarity=0.301  Sum_probs=50.5

Q ss_pred             CceEEEEEecCCcccccccceEEEeeCCEEEEEEcc----------------CCcceeeeecccccCCCCCCceeeEEec
Q 024881           87 SAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR----------------SGSFITLIETNQLFDKIKPTETIWYIDE  150 (261)
Q Consensus        87 l~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~----------------~~~~~tlId~g~L~~kIk~~Et~W~IdD  150 (261)
                      -++..|++.||+   .+..||.|.+.++.|+|.-++                .+.+..-|.   |.+.|..+  -...+|
T Consensus        10 ~~~~~v~~~lPG---~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~---LP~~vd~~--~A~~~~   81 (90)
T cd06470          10 ENNYRITLAVAG---FSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFN---LADHVKVK--GAELEN   81 (90)
T ss_pred             CCeEEEEEECCC---CCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEE---CCCCceEC--eeEEeC
Confidence            379999999998   788999999999999998543                334444444   66777765  567899


Q ss_pred             CeEEEEEEe
Q 024881          151 DQLVINLKK  159 (261)
Q Consensus       151 ~~lvv~L~K  159 (261)
                      ..|.|.|.+
T Consensus        82 GvL~I~l~~   90 (90)
T cd06470          82 GLLTIDLER   90 (90)
T ss_pred             CEEEEEEEC
Confidence            999999874

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=94.66  E-value=0.022  Score=53.52  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=29.5

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCc------HHHHHHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLST------KELLETFA  225 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDT------DeLIEq~a  225 (261)
                      |.+.||+||||||..+.| +-+||-++|.      ++++|...
T Consensus         4 vIiTGlSGaGKs~Al~~l-ED~Gy~cvDNlP~~Ll~~l~~~~~   45 (284)
T PF03668_consen    4 VIITGLSGAGKSTALRAL-EDLGYYCVDNLPPSLLPQLIELLA   45 (284)
T ss_pred             EEEeCCCcCCHHHHHHHH-HhcCeeEEcCCcHHHHHHHHHHHH
Confidence            678899999999999988 7799999995      45555544

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=94.65  E-value=0.028  Score=47.37  Aligned_cols=28  Identities=25%  Similarity=0.143  Sum_probs=24.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ++-+|..+.|+|.+|+||||..+.||..
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          29 YVKPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4457888999999999999999999953

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=94.65  E-value=0.028  Score=48.65  Aligned_cols=28  Identities=18%  Similarity=0.090  Sum_probs=24.7

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+.+.||..+
T Consensus         8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184         8 IQQGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478889999999999999999999665

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=94.65  E-value=0.042  Score=49.03  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=24.4

Q ss_pred             eEEE-EecCCCchhHHHHHHHHhcCCCcc
Q 024881          188 SIFL-VGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       188 sIyL-VGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      +++| .|+.|+|||+.++.+|+.+|..++
T Consensus        44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~   72 (316)
T PHA02544         44 NMLLHSPSPGTGKTTVAKALCNEVGAEVL   72 (316)
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence            5666 799999999999999999987654

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=94.63  E-value=0.03  Score=49.55  Aligned_cols=30  Identities=10%  Similarity=-0.038  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..++
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   61 (264)
T PRK14243         32 DIPKNQITAFIGPSGCGKSTILRCFNRLND   61 (264)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            444788899999999999999999996543

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=94.63  E-value=0.028  Score=49.84  Aligned_cols=29  Identities=14%  Similarity=0.121  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         26 ELKPGKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578889999999999999999999653

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.62  E-value=0.031  Score=48.47  Aligned_cols=29  Identities=14%  Similarity=-0.060  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         25 PIPARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            44478889999999999999999999654

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=94.62  E-value=0.025  Score=52.60  Aligned_cols=29  Identities=28%  Similarity=0.314  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|||.+|+||||+++.|+..+
T Consensus        38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~   66 (330)
T PRK09473         38 SLRAGETLGIVGESGSGKSQTAFALMGLL   66 (330)
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            44567789999999999999999999776

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=94.62  E-value=0.029  Score=47.68  Aligned_cols=35  Identities=11%  Similarity=0.134  Sum_probs=28.3

Q ss_pred             HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +...+. ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            444444 55688899999999999999999999664

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=94.62  E-value=0.025  Score=49.67  Aligned_cols=29  Identities=17%  Similarity=0.208  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984         26 NIHHGEMVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            44578889999999999999999999765

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=94.61  E-value=0.072  Score=45.53  Aligned_cols=53  Identities=25%  Similarity=0.292  Sum_probs=37.0

Q ss_pred             HHHHhhcC-----CceEEEEecCCCchhHHHHHHHHhc---CC--CccCcH----HHHHHHhCCCHH
Q 024881          178 AGSMQLLK-----GTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTK----ELLETFAKQTID  230 (261)
Q Consensus       178 ~g~~~lLk-----G~sIyLVGmmGsGKSTVGr~LA~~L---gY--~fvDTD----eLIEq~agkSI~  230 (261)
                      .|+-++|.     |.-+-+.|.+|+|||+++..+|...   |+  -|+|++    +-+.+..+..++
T Consensus        10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~   76 (225)
T PRK09361         10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFE   76 (225)
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChH
Confidence            45556664     6678999999999999999999633   54  477887    445555544333

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=94.60  E-value=0.025  Score=56.61  Aligned_cols=29  Identities=17%  Similarity=0.052  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|..+.+||.+||||||+.+.|+..+
T Consensus       496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~  524 (708)
T TIGR01193       496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFF  524 (708)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            44468889999999999999999998654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.60  E-value=0.028  Score=49.97  Aligned_cols=29  Identities=10%  Similarity=0.076  Sum_probs=24.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34467789999999999999999999764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.60  E-value=0.028  Score=49.95  Aligned_cols=29  Identities=21%  Similarity=0.131  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         35 DIPRGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44578889999999999999999999764

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=94.55  E-value=0.027  Score=48.53  Aligned_cols=29  Identities=14%  Similarity=0.125  Sum_probs=25.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580         23 EVRPGEVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            45578889999999999999999999874

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.55  E-value=0.029  Score=45.37  Aligned_cols=29  Identities=24%  Similarity=0.209  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          21 TLKAGEIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567789999999999999999999765

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=94.54  E-value=0.027  Score=50.26  Aligned_cols=29  Identities=21%  Similarity=0.058  Sum_probs=25.4

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578889999999999999999999765

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=94.53  E-value=0.028  Score=48.41  Aligned_cols=29  Identities=14%  Similarity=0.162  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         27 HINQGEIVTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            44477789999999999999999998653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.53  E-value=0.031  Score=49.12  Aligned_cols=29  Identities=21%  Similarity=0.032  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         34 QIPKNSVTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578889999999999999999999654

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=94.53  E-value=0.032  Score=47.79  Aligned_cols=29  Identities=17%  Similarity=0.121  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          23 TIPAGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45588889999999999999999999654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=94.53  E-value=0.032  Score=47.24  Aligned_cols=29  Identities=17%  Similarity=0.091  Sum_probs=25.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ..-+|..+-|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          22 TLAAGEALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578889999999999999999999765

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.53  E-value=0.03  Score=49.98  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   52 (275)
T PRK13639         24 KAEKGEMVALLGPNGAGKSTLFLHFNGIL   52 (275)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578889999999999999999998653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=94.53  E-value=0.03  Score=49.69  Aligned_cols=27  Identities=19%  Similarity=0.019  Sum_probs=24.0

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          23 SESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999999999764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=94.53  E-value=0.035  Score=48.65  Aligned_cols=25  Identities=12%  Similarity=0.054  Sum_probs=22.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      -..+||.+||||||+.+.|+-.||-
T Consensus        27 ~~~IvG~NGsGKStll~Ai~~ll~~   51 (251)
T cd03273          27 FNAITGLNGSGKSNILDAICFVLGI   51 (251)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4779999999999999999988864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=94.52  E-value=0.031  Score=48.48  Aligned_cols=29  Identities=14%  Similarity=-0.005  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         25 DIEENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34478889999999999999999999754

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=94.50  E-value=0.033  Score=49.60  Aligned_cols=29  Identities=10%  Similarity=0.037  Sum_probs=25.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-+|..+.|+|.+|+||||+.+.||..+
T Consensus        46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         46 DIHENEVTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            44578889999999999999999999765

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=94.50  E-value=0.033  Score=46.91  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|..+.|+|.+|+||||+.+.||..+
T Consensus        27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          27 EVPKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            44578889999999999999999999863

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.50  E-value=0.025  Score=52.66  Aligned_cols=38  Identities=16%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             HhhcCCceE--------EEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          181 MQLLKGTSI--------FLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       181 ~~lLkG~sI--------yLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      .++|+|+|+        .|.|++||||||++..|+-.=+|....-+
T Consensus        17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~   62 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE   62 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecce
Confidence            467888876        47899999999999999999999875543

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=94.47  E-value=0.034  Score=46.94  Aligned_cols=29  Identities=24%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          30 KVKAGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            55678889999999999999999998653

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=94.46  E-value=0.033  Score=48.43  Aligned_cols=29  Identities=17%  Similarity=0.111  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          43 TIEKGEIVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            44467778999999999999999999754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.46  E-value=0.032  Score=49.58  Aligned_cols=29  Identities=14%  Similarity=0.206  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632         31 EINEGEYVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578889999999999999999998764

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=94.45  E-value=0.035  Score=49.19  Aligned_cols=28  Identities=14%  Similarity=-0.057  Sum_probs=24.6

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-.|..+.|+|.+|+||||+.+.||..+
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         42 IPEKTVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3467889999999999999999999765

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.43  E-value=0.037  Score=48.03  Aligned_cols=30  Identities=17%  Similarity=0.045  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..++
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (250)
T PRK14266         25 DIPKNSVTALIGPSGCGKSTFIRTLNRMND   54 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            344788899999999999999999997654

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=94.40  E-value=0.035  Score=47.36  Aligned_cols=29  Identities=14%  Similarity=0.038  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        22 TVPKNSVYGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578889999999999999999999764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=94.40  E-value=0.034  Score=48.66  Aligned_cols=29  Identities=21%  Similarity=0.107  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (255)
T PRK11231         24 SLPTGKITALIGPNGCGKSTLLKCFARLL   52 (255)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            34477889999999999999999999754

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.39  E-value=0.029  Score=50.37  Aligned_cols=29  Identities=14%  Similarity=0.178  Sum_probs=26.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~   57 (282)
T PRK13640         29 SIPRGSWTALIGHNGSGKSTISKLINGLL   57 (282)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            66678889999999999999999999765

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=94.38  E-value=0.031  Score=48.46  Aligned_cols=29  Identities=17%  Similarity=0.109  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (237)
T TIGR00968        22 EVPTGSLVALLGPSGSGKSTLLRIIAGLE   50 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56688889999999999999999999653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=94.38  E-value=0.034  Score=49.12  Aligned_cols=29  Identities=21%  Similarity=0.080  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T TIGR02769        33 SIEEGETVGLLGRSGCGKSTLARLLLGLE   61 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578889999999999999999999765

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=94.38  E-value=0.034  Score=49.42  Aligned_cols=28  Identities=11%  Similarity=0.086  Sum_probs=24.5

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+.+.||..+
T Consensus        47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          47 VREGEIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467789999999999999999999765

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06893 DNA replication initiation factor; Validated

Probab=94.38  E-value=0.04  Score=48.22  Aligned_cols=33  Identities=3%  Similarity=0.025  Sum_probs=26.5

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc-----CCCccCcH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTK  218 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L-----gY~fvDTD  218 (261)
                      ...+||.|.+|+|||.+++.+|..+     +-.|++..
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            3458999999999999999999875     44566654

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=94.37  E-value=0.051  Score=47.83  Aligned_cols=27  Identities=11%  Similarity=0.081  Sum_probs=24.2

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      +.+|.++|.+||||||..+.|+..+..
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~  153 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPP  153 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred             ceEEEEECCCccccchHHHHHhhhccc
Confidence            678999999999999999999988743

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.37  E-value=0.034  Score=49.67  Aligned_cols=29  Identities=17%  Similarity=0.202  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (274)
T PRK13647         27 SIPEGSKTALLGPNGAGKSTLLLHLNGIY   55 (274)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45678889999999999999999999543

>PRK13531 regulatory ATPase RavA; Provisional

Probab=94.37  E-value=0.05  Score=54.71  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=29.6

Q ss_pred             HHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .-..-++.|.+|.|.|.+|+|||++++.||+.++
T Consensus        31 lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~   64 (498)
T PRK13531         31 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ   64 (498)
T ss_pred             HHHHHHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence            3445678899999999999999999999999864

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.36  E-value=0.029  Score=54.70  Aligned_cols=28  Identities=32%  Similarity=0.207  Sum_probs=24.3

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .-+|..+.|||.+||||||+.+.|+..+
T Consensus       373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        373 LPAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467789999999999999999998764

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.36  E-value=0.035  Score=53.63  Aligned_cols=36  Identities=22%  Similarity=0.274  Sum_probs=29.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc----CC---CccCcHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL----GY---TPLSTKEL  220 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L----gY---~fvDTDeL  220 (261)
                      +|..+.|||++|+||||+...||.++    |+   .++++|.+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~  178 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY  178 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            57889999999999999999999763    43   35667664

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=94.36  E-value=0.033  Score=48.73  Aligned_cols=29  Identities=21%  Similarity=0.103  Sum_probs=25.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (256)
T TIGR03873        23 TAPPGSLTGLLGPNGSGKSTLLRLLAGAL   51 (256)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            34568889999999999999999999764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.35  E-value=0.035  Score=49.61  Aligned_cols=29  Identities=10%  Similarity=-0.043  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44568889999999999999999999654

>cd04155 Arl3 Arl3 subfamily

Probab=94.35  E-value=0.047  Score=43.44  Aligned_cols=30  Identities=13%  Similarity=0.131  Sum_probs=24.7

Q ss_pred             HHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       180 ~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .....+...|.++|.+|+||||+.+.|...
T Consensus         8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155           8 LRKSSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             hhccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            334455678999999999999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=94.35  E-value=0.033  Score=54.09  Aligned_cols=28  Identities=25%  Similarity=0.228  Sum_probs=24.5

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .=+|..+.+||.+||||||+.+.|+..+
T Consensus       366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~  393 (582)
T PRK11176        366 IPAGKTVALVGRSGSGKSTIANLLTRFY  393 (582)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3467789999999999999999998865

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.33  E-value=0.04  Score=54.53  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=27.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc----C--CCccCcHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKE  219 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L----g--Y~fvDTDe  219 (261)
                      ++..|.++|..|+||||++..||..+    |  -.++|+|.
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt  262 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN  262 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence            35568999999999999999999754    3  33577776

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=94.33  E-value=0.026  Score=48.44  Aligned_cols=25  Identities=8%  Similarity=0.159  Sum_probs=21.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |.-+.|+|.||+||||+.+.|+-.|
T Consensus        28 ~~~~~i~G~NGsGKSTll~~i~~~l   52 (213)
T cd03279          28 NGLFLICGPTGAGKSTILDAITYAL   52 (213)
T ss_pred             cCEEEEECCCCCCHHHHHHHheeeE
Confidence            4568999999999999999998655

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=94.31  E-value=0.035  Score=50.95  Aligned_cols=29  Identities=17%  Similarity=0.234  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+-.+
T Consensus        29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~   57 (305)
T PRK13651         29 EINQGEFIAIIGQTGSGKTTFIEHLNALL   57 (305)
T ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            55678889999999999999999999654

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=94.31  E-value=0.033  Score=55.66  Aligned_cols=29  Identities=21%  Similarity=0.059  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++=+|..+.+||.+||||||+.+.|+..+
T Consensus       475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~  503 (686)
T TIGR03797       475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFE  503 (686)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33467789999999999999999998765

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=94.30  E-value=0.032  Score=51.93  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=25.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|||.+|+||||+++.|+..+
T Consensus        43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~   71 (331)
T PRK15079         43 RLYEGETLGVVGESGCGKSTFARAIIGLV   71 (331)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            34467789999999999999999999765

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=94.30  E-value=0.036  Score=49.28  Aligned_cols=29  Identities=24%  Similarity=0.138  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   62 (268)
T PRK10419         34 SLKSGETVALLGRSGCGKSTLARLLVGLE   62 (268)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=94.29  E-value=0.038  Score=47.66  Aligned_cols=29  Identities=17%  Similarity=0.027  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~   50 (232)
T cd03300          22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFE   50 (232)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45578899999999999999999999765

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=94.27  E-value=0.037  Score=47.82  Aligned_cols=29  Identities=21%  Similarity=0.165  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          44 EVPRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33467789999999999999999999653

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.27  E-value=0.038  Score=48.96  Aligned_cols=29  Identities=17%  Similarity=0.086  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578889999999999999999998654

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.27  E-value=0.036  Score=46.45  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=22.4

Q ss_pred             EEEEecCCCchhHHHHHHHHhc---CCCc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL---GYTP  214 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L---gY~f  214 (261)
                      |.++|++|+||||+...|+..|   ||+.
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V   30 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKALKARGYRV   30 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            5789999999999999998876   6655

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=94.25  E-value=0.033  Score=50.15  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~   51 (272)
T PRK13547         23 RIEPGRVTALLGRNGAGKSTLLKALAGDL   51 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578889999999999999999999765

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=94.24  E-value=0.039  Score=48.93  Aligned_cols=29  Identities=21%  Similarity=0.313  Sum_probs=25.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~   63 (267)
T PRK15112         35 TLREGQTLAIIGENGSGKSTLAKMLAGMI   63 (267)
T ss_pred             EecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            34467789999999999999999999765

>TIGR00368 Mg chelatase-related protein

Probab=94.22  E-value=0.019  Score=56.95  Aligned_cols=60  Identities=18%  Similarity=0.175  Sum_probs=42.3

Q ss_pred             hhHHHHHHHhhcC-CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHH
Q 024881          173 WESLTAGSMQLLK-GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWML  234 (261)
Q Consensus       173 We~l~~g~~~lLk-G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFa  234 (261)
                      .+.+..++.-... |.++.|+|.+|+|||++++.++..|  ++.+.++.+|.....++.-.+.
T Consensus       197 q~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~ll--p~~~~~~~le~~~i~s~~g~~~  257 (499)
T TIGR00368       197 QQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGIL--PPLTNEEAIETARIWSLVGKLI  257 (499)
T ss_pred             cHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhccc--CCCCCcEEEeccccccchhhhc
Confidence            4555666665554 4789999999999999999999876  5556666666555555544443

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]

Probab=94.20  E-value=0.011  Score=59.92  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=30.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      .++|++||.++||+|+|+..|++|+|.++|.|
T Consensus       564 ssm~vigmr~agkttigk~~akeL~~kimdld  595 (595)
T KOG0692|consen  564 SSMFVIGMREAGKTTIGKPAAKELYWKIMDLD  595 (595)
T ss_pred             ceeeeehhhhcCceecCccchHHhCeeeeccC
Confidence            47999999999999999999999999999975

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=94.20  E-value=0.039  Score=50.02  Aligned_cols=29  Identities=17%  Similarity=0.187  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        26 TIARGECFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34467789999999999999999999754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.20  E-value=0.04  Score=48.56  Aligned_cols=28  Identities=11%  Similarity=-0.081  Sum_probs=24.5

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+.+.||..+
T Consensus        39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   66 (265)
T PRK14252         39 VHEKQVTALIGPSGCGKSTFLRCFNRMH   66 (265)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            3468889999999999999999999655

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=94.19  E-value=0.039  Score=48.66  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   52 (258)
T PRK13548         24 TLRPGEVVAILGPNGAGKSTLLRALSGEL   52 (258)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578889999999999999999999764

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=94.19  E-value=0.022  Score=53.41  Aligned_cols=33  Identities=12%  Similarity=0.078  Sum_probs=25.8

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC---C--CccCcHHHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG---Y--TPLSTKELL  221 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg---Y--~fvDTDeLI  221 (261)
                      |-+.|.+|||||||++.|++.|+   .  .+++.|.+=
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yy   39 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFH   39 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccc
Confidence            56899999999999999998764   2  456666543

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK06835 DNA replication protein DnaC; Validated

Probab=94.18  E-value=0.043  Score=51.74  Aligned_cols=41  Identities=17%  Similarity=0.267  Sum_probs=34.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIEq~a  225 (261)
                      .+.++||.|..|+|||.++..+|..+   ||.  |+++++++++..
T Consensus       182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~  227 (329)
T PRK06835        182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR  227 (329)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence            35789999999999999999999987   553  678888888774

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=94.17  E-value=0.041  Score=44.83  Aligned_cols=29  Identities=24%  Similarity=0.192  Sum_probs=24.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.|+..+
T Consensus        22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          22 TINPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34467788999999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.17  E-value=0.04  Score=49.53  Aligned_cols=29  Identities=14%  Similarity=0.218  Sum_probs=24.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~   57 (286)
T PRK13646         29 EFEQGKYYAIVGQTGSGKSTLIQNINALL   57 (286)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34467779999999999999999998553

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.15  E-value=0.039  Score=48.02  Aligned_cols=29  Identities=10%  Similarity=-0.027  Sum_probs=26.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-.|..+.|+|.+|+||||+.+.||..+
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14249         26 DFPERQITAIIGPSGCGKSTLLRALNRMN   54 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45678889999999999999999999876

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=94.14  E-value=0.036  Score=50.18  Aligned_cols=29  Identities=14%  Similarity=0.115  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   43 (302)
T TIGR01188        15 KVREGEVFGFLGPNGAGKTTTIRMLTTLL   43 (302)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34467788999999999999999999765

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=94.11  E-value=0.043  Score=48.80  Aligned_cols=28  Identities=11%  Similarity=-0.051  Sum_probs=24.5

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+.+.||..+
T Consensus        48 i~~Ge~~~I~G~nGsGKSTLl~~laGl~   75 (272)
T PRK14236         48 IPKNRVTAFIGPSGCGKSTLLRCFNRMN   75 (272)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3468889999999999999999999664

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=94.10  E-value=0.041  Score=51.22  Aligned_cols=29  Identities=10%  Similarity=0.058  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+||||||+.+.||..+
T Consensus        27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~   55 (343)
T PRK11153         27 HIPAGEIFGVIGASGAGKSTLIRCINLLE   55 (343)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33467779999999999999999999765

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=94.10  E-value=0.04  Score=53.34  Aligned_cols=29  Identities=21%  Similarity=0.125  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|..+.+||.+|+||||+.+.|+..+
T Consensus       362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~  390 (576)
T TIGR02204       362 TVRPGETVALVGPSGAGKSTLFQLLLRFY  390 (576)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            44577789999999999999999998765

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK13974 thymidylate kinase; Provisional

Probab=94.10  E-value=0.047  Score=47.15  Aligned_cols=27  Identities=26%  Similarity=0.075  Sum_probs=25.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .|.-|.|.|..||||||..+.|++.|.
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~   28 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLP   28 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688899999999999999999999883

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=94.10  E-value=0.038  Score=48.49  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        18 ~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~   46 (248)
T PRK03695         18 EVRAGEILHLVGPNGAGKSTLLARMAGLL   46 (248)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34567789999999999999999998643

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=94.09  E-value=0.062  Score=46.45  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=29.3

Q ss_pred             HHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          177 TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       177 ~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+++.|+|..+.|+|.+|+||||+...|....
T Consensus        26 ~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   26 IEELKELLKGKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             HHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4567889999999999999999999998886653

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13409 putative ATPase RIL; Provisional

Probab=94.09  E-value=0.074  Score=53.48  Aligned_cols=56  Identities=16%  Similarity=0.090  Sum_probs=40.3

Q ss_pred             HHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCC------CccCcHHHHHHHhCCCHHHHH
Q 024881          178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGY------TPLSTKELLETFAKQTIDSWM  233 (261)
Q Consensus       178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY------~fvDTDeLIEq~agkSI~eIF  233 (261)
                      .++...=+|.-+-|||.+|+||||+.+.||-.+--      ...+.|+++..+.|+.+...+
T Consensus        91 ~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~  152 (590)
T PRK13409         91 YGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF  152 (590)
T ss_pred             ecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHH
Confidence            34444457888999999999999999999987531      233456666666676666554

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.07  E-value=0.066  Score=52.48  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +|..|.|||.+|+||||+.+.||.+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5667999999999999999999975

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.06  E-value=0.049  Score=54.50  Aligned_cols=53  Identities=15%  Similarity=0.173  Sum_probs=40.9

Q ss_pred             EecCCCCCCcccccchhHHHHHHHhhcC-Cc--e-EEEEecCCCchhHHHHHHHHhcCC
Q 024881          158 KKQDPELKWPDIVESWESLTAGSMQLLK-GT--S-IFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLk-G~--s-IyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      +|+-+ |.|.||+- .+.+++-+.+.+. |.  + +.|.|+.|+||||+++.||+.|+-
T Consensus         8 ~kyRP-~~~~eiiG-q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c   64 (585)
T PRK14950          8 RKWRS-QTFAELVG-QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC   64 (585)
T ss_pred             HHhCC-CCHHHhcC-CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            56777 88877763 6777777776555 32  3 468999999999999999999963

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=94.05  E-value=0.043  Score=49.32  Aligned_cols=29  Identities=21%  Similarity=0.180  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||-.+
T Consensus        46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~   74 (264)
T PRK13546         46 KAYEGDVIGLVGINGSGKSTLSNIIGGSL   74 (264)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34467789999999999999999999764

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=94.03  E-value=0.042  Score=53.55  Aligned_cols=30  Identities=17%  Similarity=0.086  Sum_probs=26.9

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      +-+|..+-+||.+||||||+.+.|+..+..
T Consensus       352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~  381 (567)
T COG1132         352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDP  381 (567)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            557888999999999999999999988766

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.03  E-value=0.045  Score=49.07  Aligned_cols=29  Identities=10%  Similarity=0.119  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (279)
T PRK13650         29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLL   57 (279)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44577789999999999999999998654

>cd01890 LepA LepA subfamily

Probab=94.02  E-value=0.055  Score=43.29  Aligned_cols=25  Identities=12%  Similarity=0.062  Sum_probs=22.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +||.|||..|+||||+...|...-|
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~   25 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTG   25 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhC
Confidence            5899999999999999999987543

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.02  E-value=0.045  Score=49.25  Aligned_cols=29  Identities=21%  Similarity=0.281  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~   57 (287)
T PRK13641         29 ELEEGSFVALVGHTGSGKSTLMQHFNALL   57 (287)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44577889999999999999999998543

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=94.01  E-value=0.051  Score=53.97  Aligned_cols=46  Identities=26%  Similarity=0.450  Sum_probs=39.7

Q ss_pred             hhHHHHHHH-----hhcCCceEEEEecCCCchhHHHHHHH--------HhcCCCccCcH
Q 024881          173 WESLTAGSM-----QLLKGTSIFLVGDSTEVNEKVALELA--------VGLGYTPLSTK  218 (261)
Q Consensus       173 We~l~~g~~-----~lLkG~sIyLVGmmGsGKSTVGr~LA--------~~LgY~fvDTD  218 (261)
                      |.++...+.     +...+.+|++.|..|+||||+...|-        .+|+|.|+|..
T Consensus         7 W~siL~ev~~~~~~~~~~~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~   65 (472)
T PF05783_consen    7 WSSILSEVSNSSSTKLPSEKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVK   65 (472)
T ss_pred             HHHHHHHHHhhccccCCCCceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeec
Confidence            999999885     56788999999999999999988775        46999999854

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=94.01  E-value=0.049  Score=40.51  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+|.++|+.|+||||+...|...-
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999988887543

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	5e-10
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	2e-08
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	5e-08
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	1e-06
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	7e-05
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	5e-04

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124

 Score = 55.0 bits (132), Expect = 5e-10
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           A    Y +S    ++E+R+ +    +   K + V    + + V +        L+E  +L
Sbjct: 17  AVRENYTWSQDYTDLEVRVPVPK-HVVKGKQVSVALSSSSIRVAMLEENGERVLME-GKL 74

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
             KI    ++W +     +++NL K   E  W  I+E 
Sbjct: 75  THKINTESSLWSLEPGKCVLVNLSKVG-EYWWNAILEG 111

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Length = 121

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           A+   Y ++   +E++L +          KD+ VD     L V +    + I      +L
Sbjct: 14  ADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAII----DGEL 69

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
           ++++K  E+ W I D   + ++L+K +    W  +V S
Sbjct: 70  YNEVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSS 107

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 49.3 bits (117), Expect = 5e-08
 Identities = 12/91 (13%), Positives = 32/91 (35%)

Query: 79  SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDK 138
           S Y +      +++ + L  +    ++++ V        + V         +  N L   
Sbjct: 21  SNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKP 80

Query: 139 IKPTETIWYIDEDQLVINLKKQDPELKWPDI 169
           I    +   +  D ++I  +K+    +W  +
Sbjct: 81  ISVEGSSKKVKTDTVLILCRKKVENTRWDYL 111

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Length = 131

 Score = 49.1 bits (117), Expect = 8e-08
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           ++   Y ++   AE++L +          KD+ VD     L V +      +      +L
Sbjct: 5   SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVV----DGEL 60

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
           ++++K  E+ W I D   + ++L+K +    W  +V S
Sbjct: 61  YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTS 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 8e-07
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 47/224 (20%)

Query: 43  FISSSLHKSTNVVPIKTHDRRRF-TCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEI 101
           F+ S +          +   R +    + L +     ++Y  S     ++LR  L  LE+
Sbjct: 93  FLMSPIKTEQR---QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL--LEL 147

Query: 102 QSSKDIFVDADG----TCLTVRVNRSGSF----------ITLIETNQLFDKIKPTETIWY 147
           + +K++ +D       T + + V  S             + L   N     ++  + + Y
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 148 -IDEDQLVINLKKQDPELKWPDI----------------------VESWESLTA--GSMQ 182
            ID +    +    + +L+   I                      V++ ++  A   S +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226
           +L  T    V D   ++      +++      L+  E+     K
Sbjct: 268 ILLTTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLK 309

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 74  IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETN 133
           +P+  ++Y +     EI ++  +       S  I +   G  + V+         +I+  
Sbjct: 1   MPS-EAKYTWDQELNEINIQFPVT--GDADSSAIKIRMVGKKICVKNQGE----IVID-G 52

Query: 134 QLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVES 172
           +L  ++  +   W I+ D + +N+ K+  E  W  ++  
Sbjct: 53  ELLHEVDVSSLWWVINGDVVDVNVTKKRNEW-WDSLLVG 90

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Length = 157

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 10/101 (9%)

Query: 74  IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETN 133
           +P  T   ++     E+ + +Q+       ++DI        + + V             
Sbjct: 9   VPCGTPWGQWYQTLEEVFIEVQVP--PGTRAQDIQCGLQSRHVALAVGGREIL-----KG 61

Query: 134 QLFDKIKPTETIWYIDEDQL---VINLKKQDPELKWPDIVE 171
           +LFD     E  W +++ ++   V+   K+D    W  ++E
Sbjct: 62  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLE 102

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 14/70 (20%), Positives = 28/70 (40%)

Query: 98  SLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL 157
              ++ SKD+ V+ + + LT            +    LF  I P ++     +  ++  L
Sbjct: 18  EFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCL 77

Query: 158 KKQDPELKWP 167
           +K +    WP
Sbjct: 78  RKGESGQSWP 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	99.89
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	99.86
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	99.83
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	99.81
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	99.8
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.74
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.73
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.72
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	99.72
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.72
1via_A	175	Shikimate kinase; structural genomics, transferase	99.66
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.63
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.63
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.61
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.6
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.59
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.56
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	99.5
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	99.43
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.42
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.39
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.37
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.37
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	99.36
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.34
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	99.33
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.33
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.31
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.29
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.28
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.26
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.25
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.22
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.22
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.22
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.21
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.19
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.18
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.18
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.17
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.16
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.16
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.14
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.13
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.1
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.07
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.06
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.02
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.02
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.02
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.0
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.0
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.99
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.99
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.97
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.96
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.96
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.94
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.93
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.93
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.92
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.91
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.91
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.89
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	98.87
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.84
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.76
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.71
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.71
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.7
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.7
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.69
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.68
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.68
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.67
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.65
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.64
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.62
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.62
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.57
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.56
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.53
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.52
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.49
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.49
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.48
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.47
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.45
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.44
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.43
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.42
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.42
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.4
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.37
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.35
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.33
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.3
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.23
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.13
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.11
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.1
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.05
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.05
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.9
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.82
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.81
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.7
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.67
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.65
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.62
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.6
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.53
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.52
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.45
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.38
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.37
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.35
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.32
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.29
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.29
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.28
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.26
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.25
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.25
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.23
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.23
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.22
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.2
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.19
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.16
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.14
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.14
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.12
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.11
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	97.1
4fei_A	102	Heat shock protein-related protein; stress respons	97.09
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.08
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.07
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.06
3bos_A	242	Putative DNA replication factor; P-loop containing	97.04
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.03
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.01
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.0
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.97
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.96
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.95
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.92
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.89
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.88
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.85
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.79
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.77
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.75
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.73
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.72
3co5_A	143	Putative two-component system transcriptional RES	96.7
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.69
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.67
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.65
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.63
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.62
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.58
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.57
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.54
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.54
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.53
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.52
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.51
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.5
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.5
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.47
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.46
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.45
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.45
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.44
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.42
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	96.42
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.41
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.38
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	96.37
2qgz_A	308	Helicase loader, putative primosome component; str	96.35
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.34
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.33
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.32
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.32
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.3
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.27
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.27
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.27
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.26
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	96.26
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.25
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.24
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.2
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.16
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.15
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.13
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.1
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.1
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.01
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.0
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.96
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.96
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.94
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.92
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.92
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.92
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.91
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.9
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.89
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.89
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.88
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.82
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.78
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.77
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.74
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.73
3pvs_A	447	Replication-associated recombination protein A; ma	95.72
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.72
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.71
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.68
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.67
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.66
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.64
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.62
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.6
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.58
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.53
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.52
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.52
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.51
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.5
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.49
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.48
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.46
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.46
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.45
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.45
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.45
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.44
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.43
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.42
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.41
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	95.39
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.38
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.38
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.37
1g6h_A	257	High-affinity branched-chain amino acid transport	95.34
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.33
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.32
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.31
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.29
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.28
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.25
2fna_A	357	Conserved hypothetical protein; structural genomic	95.25
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.24
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.23
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.23
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.2
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.2
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	95.18
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.18
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.17
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.16
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	95.16
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.15
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.13
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.12
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.09
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.08
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.06
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.03
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.02
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.0
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.99
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.97
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.96
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.96
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.94
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.91
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	94.89
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.87
2og2_A	359	Putative signal recognition particle receptor; nuc	94.79
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.78
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.77
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.77
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.75
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	94.74
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	94.74
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	94.71
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.71
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	94.7
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	94.68
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.64
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.64
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.63
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.62
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.56
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.53
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.53
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	94.51
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.48
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.48
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.47
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.47
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	94.46
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.43
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.41
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.4
3b6e_A	216	Interferon-induced helicase C domain-containing P;	94.39
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.38
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.29
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	94.29
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.25
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.22
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.18
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.13
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.13
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.1
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.09
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.07
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.06
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.06
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.05
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.04
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.03
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.03
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.01
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.01
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.99
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.98
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.95
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	93.93
2wji_A	165	Ferrous iron transport protein B homolog; membrane	93.92
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	93.92
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.88
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.87
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.87
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	93.86
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.81
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.8
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.8
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.76
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.76
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	93.74
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.71
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.7
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	93.64
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.62
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	93.57
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.55
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.55
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	93.47
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.46
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	93.44
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.39
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.37
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.33
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	93.33
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	93.31
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.31
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.28
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.28
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.26
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	93.25
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	93.24
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.23
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.22
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	93.19
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.18
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	93.16
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	93.16
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	93.09
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.09
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	93.04
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	92.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.95
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.94
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	92.92
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.92
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.92
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	92.9
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.89
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.88
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.87
1p9r_A	418	General secretion pathway protein E; bacterial typ	92.86
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.86
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	92.85
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.82
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.81
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.79
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	92.76
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	92.67
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	92.67
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.66
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	92.65
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	92.63
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.62
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.61
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.6
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.59
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.58
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.56
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	92.55
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	92.55
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	92.55
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	92.54
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	92.48
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.45
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	92.43
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	92.4
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.38
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	92.36
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	92.33
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	92.29
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	92.25
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.24
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	92.19
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.17
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.15
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.14
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	92.14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.13
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.09
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.09
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	92.08
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	92.05
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	92.05
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.05
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	92.03
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.99
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	91.98
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.91
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.9
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.85
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	91.84
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.83
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	91.81
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	91.73
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.72
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	91.71
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	91.71
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.71
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.69
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.69
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.69
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	91.66
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.65
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	91.59
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.59
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.57
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.56
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	91.53
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.5
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	91.49
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.49
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.46
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	91.45
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	91.39
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	91.35
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.32
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.29
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.23
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	91.21
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	91.14
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	91.14
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	91.13
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	91.12
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	91.1
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	91.07
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	90.98
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	90.97
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	90.91
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	90.9
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.89
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.89
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	90.85
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	90.81
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	90.78
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	90.75
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.75
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	90.63
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	90.62
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	90.6
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.55
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.52
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	90.51
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	90.51
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	90.47
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	90.46
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	90.42
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.42
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	90.42
2xxa_A	433	Signal recognition particle protein; protein trans	90.42
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.38
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	90.34
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	90.22
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	90.18

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=99.89  E-value=2.5e-23  Score=165.89  Aligned_cols=94  Identities=22%  Similarity=0.507  Sum_probs=86.8

Q ss_pred             CCCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecC-eE
Q 024881           75 PANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QL  153 (261)
Q Consensus        75 ~~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~-~l  153 (261)
                      -+.+++|.|+|++.+|+|+|+||..+.+++|||.|+++.++|+|++++++++   ++ |+||++|+++||+|+|+|+ .|
T Consensus        13 G~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~---~~-g~L~~~I~~deS~w~i~~~~~i   88 (121)
T 3qor_A           13 GADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAI---ID-GELYNEVKVEESSWLIADGAVV   88 (121)
T ss_dssp             SCBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTSCCS---EE-EEBSSCBCGGGCEEEEETTTEE
T ss_pred             CCcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCcceE---Ee-ccccccccccccEEEEcCCCEE
Confidence            3456799999999999999999995558999999999999999999998776   89 9999999999999999994 99


Q ss_pred             EEEEEecCCCCCCcccccchhHHHHH
Q 024881          154 VINLKKQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       154 vv~L~K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      +|+|+|.+. |+|      |++|++|
T Consensus        89 ~i~L~K~~~-~~~------W~~L~~~  107 (121)
T 3qor_A           89 TVHLEKINK-MEW------WSRLVSS  107 (121)
T ss_dssp             EEEEEBSSS-SCC------CSCSBTT
T ss_pred             EEEEEECCC-CCC------ChhhhcC
Confidence            999999998 999      9999876

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=99.86  E-value=7.5e-22  Score=158.06  Aligned_cols=93  Identities=22%  Similarity=0.525  Sum_probs=85.6

Q ss_pred             CCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecC-eEE
Q 024881           76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLV  154 (261)
Q Consensus        76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~-~lv  154 (261)
                      +.+++|.|+|++.+|.|+|+||..+.+++||+.|+++.++|+|++++++++   ++ |+||++|+|+||.|+++++ +|+
T Consensus         5 ~~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~---~~-~~L~~~I~~e~s~w~i~~~k~v~   80 (131)
T 1wfi_A            5 SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPV---VD-GELYNEVKVEESSWLIEDGKVVT   80 (131)
T ss_dssp             SSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCS---BC-SCBSSCBCSTTCEEEEETTTEEE
T ss_pred             CCCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCceEE---Ee-cccccccccccCEEEEcCCCEEE
Confidence            346799999999999999999985559999999999999999999998766   88 9999999999999999995 899


Q ss_pred             EEEEecCCCCCCcccccchhHHHHH
Q 024881          155 INLKKQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       155 v~L~K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      |+|+|.++ ++|      |++|++|
T Consensus        81 i~L~K~~~-~~~------W~~L~~~   98 (131)
T 1wfi_A           81 VHLEKINK-MEW------WNRLVTS   98 (131)
T ss_dssp             EEEEBSSS-CCC------CSCSBSS
T ss_pred             EEEEECCC-CCC------ChhhhcC
Confidence            99999998 899      9999876

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=99.83  E-value=8.1e-21  Score=158.17  Aligned_cols=95  Identities=19%  Similarity=0.360  Sum_probs=85.2

Q ss_pred             CCCCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCe-
Q 024881           74 IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-  152 (261)
Q Consensus        74 ~~~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~-  152 (261)
                      .+..+++|.|+|++.+|.|+|+||.  ++++|||.|+++.++|+|+++++ ++   ++ |+||++|+++||.|+|+++. 
T Consensus         9 ~~~~~~~y~W~Qt~~eV~v~I~lp~--~~~~kdv~V~i~~~~L~v~~kg~-~~---l~-g~L~~~I~~eeS~w~i~~~k~   81 (157)
T 2rh0_A            9 VPCGTPWGQWYQTLEEVFIEVQVPP--GTRAQDIQCGLQSRHVALAVGGR-EI---LK-GKLFDSTIADEGTWTLEDRKM   81 (157)
T ss_dssp             CCEECSSEEEEECSSEEEEEEECCT--TCCGGGEEEEECSSEEEEEETTE-EE---EE-EEBSSCBCGGGCEEEEECCCE
T ss_pred             ccCCCCcEEEEecCCEEEEEEECCC--CCcccceEEEEecCEEEEEECCE-EE---Ee-eccccccCccccEEEEcCCcE
Confidence            3456789999999999999999998  68999999999999999999987 34   89 99999999999999999965 


Q ss_pred             EEEEEEecCCC-CCCcccccchhHHHHHHH
Q 024881          153 LVINLKKQDPE-LKWPDIVESWESLTAGSM  181 (261)
Q Consensus       153 lvv~L~K~d~~-m~Wp~~~e~We~l~~g~~  181 (261)
                      |+|+|+|.+.+ |+|      |++|++|-.
T Consensus        82 v~I~L~K~~~~~~~~------W~~L~k~~~  105 (157)
T 2rh0_A           82 VRIVLTKTKRDAANC------WTSLLESEY  105 (157)
T ss_dssp             EEEEEEBSSCSTTCC------CSEEETTEE
T ss_pred             EEEEEEEcCCCcCCc------ChhhhcCCC
Confidence            99999999864 789      999987643

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=99.81  E-value=3.7e-20  Score=147.27  Aligned_cols=93  Identities=22%  Similarity=0.474  Sum_probs=80.4

Q ss_pred             CCCCceEEcccCceEEEEEecCCcccc-cccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCe-E
Q 024881           76 ANTSQYEFSDGSAEIELRLQLGSLEIQ-SSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-L  153 (261)
Q Consensus        76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~-~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~-l  153 (261)
                      +.+++|.|+|++.+|.|+|+||.  ++ ++||+.|+++.++|+|++++...-..+++ ++||++|+|+||.|+++++. |
T Consensus        17 ~~~~~y~W~Qt~~~V~i~I~lp~--~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~-~~L~~~I~~e~S~w~i~~~k~v   93 (124)
T 1wgv_A           17 AVRENYTWSQDYTDLEVRVPVPK--HVVKGKQVSVALSSSSIRVAMLEENGERVLME-GKLTHKINTESSLWSLEPGKCV   93 (124)
T ss_dssp             BCCSSCEEEEETTEEEEEEECCT--TCCSGGGEEEEECSSEEEEEEECSSSEEEEEE-EEBSSCBCTTTCEEEECTTSEE
T ss_pred             CcCCcEEEEEcccEEEEEEEcCC--CCCchhheEEEEEcCEEEEEEEccCCCceEEc-ccccCcCCCcCCEEEEeCCCEE
Confidence            34679999999999999999998  56 99999999999999999975322223488 99999999999999999965 9


Q ss_pred             EEEEEecCCCCCCcccccchhHHHHH
Q 024881          154 VINLKKQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       154 vv~L~K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      +|+|+|.+  ++|      |++|++|
T Consensus        94 ~i~L~K~~--~~~------W~~L~~~  111 (124)
T 1wgv_A           94 LVNLSKVG--EYW------WNAILEG  111 (124)
T ss_dssp             EEEECBSS--SCC------CSCSBTT
T ss_pred             EEEEEECC--CCC------CcCcccC
Confidence            99999985  689      9999865

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=99.80  E-value=3.3e-20  Score=149.07  Aligned_cols=89  Identities=22%  Similarity=0.477  Sum_probs=77.8

Q ss_pred             CCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEE
Q 024881           77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (261)
Q Consensus        77 ~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~  156 (261)
                      .+++|.|+|+..+|.|+|+||.  +++++|+.|+++.++|+|+++|++ +   ++ |+||++|+|++|.|+++++.|+|+
T Consensus         3 ~~~~y~W~Qt~~~V~i~I~lp~--~~~~kdv~V~i~~~~l~v~~~g~~-~---~~-~~L~~~I~~e~S~w~i~~~kv~i~   75 (131)
T 2o30_A            3 SEAKYTWDQELNEINIQFPVTG--DADSSAIKIRMVGKKICVKNQGEI-V---ID-GELLHEVDVSSLWWVINGDVVDVN   75 (131)
T ss_dssp             --CCCEEEEETTEEEEEEECC-----CCSCEEEEEETTEEEEEETTEE-E---EE-EEBSSCEEEEEEEEEEETTEEEEE
T ss_pred             CCCcEEEEecCCEEEEEEECCC--CCCccceEEEEECCEEEEEECCEe-e---Ec-cccccccccccCEEEEeCCEEEEE
Confidence            4679999999999999999998  689999999999999999999875 4   89 999999999999999999889999


Q ss_pred             EEecCCCCCCcccccchhHHHHHH
Q 024881          157 LKKQDPELKWPDIVESWESLTAGS  180 (261)
Q Consensus       157 L~K~d~~m~Wp~~~e~We~l~~g~  180 (261)
                      |+|.  +++|      |++|++|=
T Consensus        76 L~K~--~~~~------W~~L~~~~   91 (131)
T 2o30_A           76 VTKK--RNEW------WDSLLVGS   91 (131)
T ss_dssp             EEES--SCCC------CSCSBC--
T ss_pred             EEEC--CCCC------CccccCCC
Confidence            9999  4899      99998663

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.74  E-value=2.3e-18  Score=136.92  Aligned_cols=72  Identities=19%  Similarity=0.169  Sum_probs=68.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      +.+|+|+|+|||||||+|+.||++|||.|+|+|+++++..|.++.++|...|++.||++|.+++.++....+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   76 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDN   76 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence            668999999999999999999999999999999999999999999999999999999999999999986544

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=4e-18  Score=139.20  Aligned_cols=86  Identities=17%  Similarity=0.118  Sum_probs=69.7

Q ss_pred             chhHHHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHH
Q 024881          172 SWESLTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLE  250 (261)
Q Consensus       172 ~We~l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLe  250 (261)
                      +|+....++. ++-+|..|+|+|+|||||||+|+.||+.|||.++|+|+++++..|.+|.++|.+.|++.||++|.++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~   89 (199)
T 3vaa_A           10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLH   89 (199)
T ss_dssp             --------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHH
Confidence            3455555555 344678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccC
Q 024881          251 SLIMFEP  257 (261)
Q Consensus       251 els~~~~  257 (261)
                      ++....+
T Consensus        90 ~l~~~~~   96 (199)
T 3vaa_A           90 EVAEFEN   96 (199)
T ss_dssp             HHTTCSS
T ss_pred             HHhhcCC
Confidence            9986544

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.72  E-value=4.4e-18  Score=149.02  Aligned_cols=77  Identities=23%  Similarity=0.309  Sum_probs=72.4

Q ss_pred             HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh-CCCHHHHHHhhCchhHHhhHHHHHHHHhcc
Q 024881          179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGECDVLESLIMF  255 (261)
Q Consensus       179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a-gkSI~eIFaeeGE~~FRelEs~VLeels~~  255 (261)
                      .+.+.|+|.+|+|+|+||+||||+|+.||+.|||.|+|+|+++++.. |++|.+||+..||+.||++|.++++++...
T Consensus        41 ~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~  118 (250)
T 3nwj_A           41 EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLM  118 (250)
T ss_dssp             TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhh
Confidence            33566779999999999999999999999999999999999999999 999999999999999999999999999865

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=4.5e-17  Score=129.99  Aligned_cols=98  Identities=14%  Similarity=0.197  Sum_probs=85.3

Q ss_pred             CCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEE
Q 024881           77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (261)
Q Consensus        77 ~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~  156 (261)
                      ...+|.|.|+.++|.|+|+++..+....+|+.|+++.++|.|.+++.+.....++.++||++|.|++|.|.+.++.|+|+
T Consensus        19 ~~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~   98 (127)
T 1x5m_A           19 KISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLIL   98 (127)
T ss_dssp             ECCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEE
T ss_pred             CccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEE
Confidence            44599999999999999999985555899999999999999999876544445785579999999999999999999999


Q ss_pred             EEecCCCCCCcccccchhHHHHHHH
Q 024881          157 LKKQDPELKWPDIVESWESLTAGSM  181 (261)
Q Consensus       157 L~K~d~~m~Wp~~~e~We~l~~g~~  181 (261)
                      |+|.++ +.|      |++|.++-.
T Consensus        99 L~K~~~-~~~------W~~L~~~~~  116 (127)
T 1x5m_A           99 CRKKVE-NTR------WDYLTQVEK  116 (127)
T ss_dssp             EECSSS-SCC------CSSSBHHHH
T ss_pred             EEECCC-CCC------CCccccccc
Confidence            999998 778      899887644

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.72  E-value=1.2e-17  Score=131.75  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=66.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      .+|+|+|+|||||||||+.||++|||+++|+|+++++..|.++.++|...|++.||++|.++|.++....+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   78 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKT   78 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999875444

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.66  E-value=1.2e-16  Score=127.03  Aligned_cols=69  Identities=17%  Similarity=0.136  Sum_probs=65.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE  256 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~  256 (261)
                      +|+|+|+|||||||+|+.||++||+.|+|+|+++++..|.++.++|.+.|++.||++|.++++++....
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~   74 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCE   74 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccC
Confidence            799999999999999999999999999999999999999999999999999999999999999887543

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.63  E-value=8e-16  Score=113.98  Aligned_cols=87  Identities=21%  Similarity=0.324  Sum_probs=75.5

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~  158 (261)
                      .+|.|.|+.++|.|+|++|+   ...+|+.|+++.++|+|.+++.+.-.-.++ ++||++|.|++|.|.+.+..|.|.|+
T Consensus         3 ~~~~W~Qt~~~V~v~i~~~~---v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~-~~L~~~I~~~~s~~~~~~~~l~i~L~   78 (92)
T 2xcm_C            3 YRHEYYQKPEEVVVTVFAKG---IPKQNVNIDFGEQILSVVIEVPGEDAYYLQ-PRLFGKIIPDKCKYEVLSTKIEICLA   78 (92)
T ss_dssp             SEEEEEEETTEEEEEEECCS---CCGGGEEEEECSSBEEEEECCTTSCCEEEC-CBBSSCBCGGGCEEEECSSCEEEEEE
T ss_pred             ccccEEeCCCEEEEEEEECC---CChHHeEEEEECCEEEEEEEcCCCcEEEEe-eEcCCccCchhEEEEEECCEEEEEEE
Confidence            48999999999999999986   678999999999999999986432223377 89999999999999999999999999


Q ss_pred             ecCCCCCCcccccchhHHH
Q 024881          159 KQDPELKWPDIVESWESLT  177 (261)
Q Consensus       159 K~d~~m~Wp~~~e~We~l~  177 (261)
                      |.++ + |      |++|.
T Consensus        79 K~~~-~-~------W~~L~   89 (92)
T 2xcm_C           79 KADI-I-T------WASLE   89 (92)
T ss_dssp             BSSS-C-C------CSCSB
T ss_pred             cCCC-C-c------chhcc
Confidence            9998 6 6      66654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.63  E-value=3.9e-16  Score=124.32  Aligned_cols=71  Identities=21%  Similarity=0.223  Sum_probs=66.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE  256 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~  256 (261)
                      +..|.|+|++||||||+|+.||++||++++|+|+++++..|.+++++|.++|+..|+++|.++++++....
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   72 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADH   72 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcC
Confidence            45699999999999999999999999999999999999999999999999999999999999999886543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.61  E-value=9.5e-16  Score=120.27  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=68.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      +|..|.|+|+|||||||+++.||..||+.++|+|+++++..|+.+..+|...|++.||+.|..++.++....+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~   75 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQG   75 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCC
Confidence            4678999999999999999999999999999999999999999999999999999999999999999876544

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.60  E-value=2.7e-15  Score=116.08  Aligned_cols=91  Identities=18%  Similarity=0.321  Sum_probs=78.1

Q ss_pred             CCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEE
Q 024881           77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (261)
Q Consensus        77 ~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~  156 (261)
                      +..+|.|.|+..+|.|+|++|+   .+.+|+.|+++.++|+|.++..+.-.-.++ ++||++|.|++|.|.+++..|.|.
T Consensus         8 ~~~~~~W~Qt~~~V~v~i~l~~---v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~-~~L~~~I~~e~s~~~~~~~~l~i~   83 (114)
T 1rl1_A            8 SKIKYDWYQTESQVVITLMIKN---VQKNDVNVEFSEKELSALVKLPSGEDYNLK-LELLHPIIPEQSTFKVLSTKIEIK   83 (114)
T ss_dssp             CCCCEEEEECSSEEEEEECCCS---CCGGGEEEECSSSCEEEEEECTTSSEEEEE-ECBSSCCCGGGEEEEECSSSEEEE
T ss_pred             CCCCccEEeCCCEEEEEEEeCC---CCHHHCEEEEEcCEEEEEEEeCCCcEEEEE-eeCCCcCCccccEEEEECCEEEEE
Confidence            4458999999999999999996   678999999999999999985422223477 899999999999999999999999


Q ss_pred             EEecCCCCCCcccccchhHHHHH
Q 024881          157 LKKQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       157 L~K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      |+|.++ + |      |++|.++
T Consensus        84 L~K~~~-~-~------W~~L~~~   98 (114)
T 1rl1_A           84 LKKPEA-V-R------WEKLEGQ   98 (114)
T ss_dssp             EECSSC-C-C------CSSSBTT
T ss_pred             EEcCCC-C-c------Ccccccc
Confidence            999998 5 7      7777654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.59  E-value=2.5e-15  Score=117.33  Aligned_cols=70  Identities=20%  Similarity=0.157  Sum_probs=65.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhccc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFE  256 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~  256 (261)
                      +.|.|+|++||||||+|+.||+.|||.++|+|+++.+..|..+.+++...|++.|+++|.+++.++....
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~   70 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKE   70 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccC
Confidence            4799999999999999999999999999999999999999999999999999999999999999887433

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.56  E-value=3.3e-15  Score=116.81  Aligned_cols=67  Identities=27%  Similarity=0.343  Sum_probs=64.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      ..|+|+|++||||||+|+.||++|||.++|+|+++++..|.++.++|.+.|++.|+++|.++++++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~   69 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA   69 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence            4699999999999999999999999999999999999999999999999999999999999999876

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=99.50  E-value=3e-14  Score=113.59  Aligned_cols=87  Identities=23%  Similarity=0.303  Sum_probs=76.1

Q ss_pred             ceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEcc-CCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR-SGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (261)
Q Consensus        80 ~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~-~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~  158 (261)
                      +|.|.|+..+|.|+|+++.     ++|+.|+++.++|.|.+++ ..+-.-.++ ++||++|+|++|.|.+.+..|.|+|+
T Consensus         5 ~~~W~Qt~~~V~ltI~~~~-----~~~~~V~~~~~~l~~~~~~~~~~~~y~~~-l~L~~~I~~e~S~~~v~~~kiei~L~   78 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVED-----SKDVNVNFEKSKLTFSCLGGSDNFKHLNE-IDLFHCIDPNDSKHKRTDRSILCCLR   78 (125)
T ss_dssp             CEEEEECSSEEEEEECCTT-----EEEEEEEEETTEEEEEEEETTTTEEEEEE-EEBSSCEEEEEEEEEECSSCEEEEEE
T ss_pred             ceeEEeCCCEEEEEEEecC-----CCceEEEEECCEEEEEEEeCCCCceEEEE-EEccceeccccCEEEECCCEEEEEEE
Confidence            7999999999999999998     3899999999999999874 211223377 89999999999999999999999999


Q ss_pred             ecCCCCCCcccccchhHHHHH
Q 024881          159 KQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       159 K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      |.++ ++|      |++|+++
T Consensus        79 K~~~-~~~------W~rL~~~   92 (125)
T 1ejf_A           79 KGES-GQS------WPRLTKE   92 (125)
T ss_dssp             ESST-TCC------CSSSBSS
T ss_pred             ECCC-CCC------CCceecC
Confidence            9987 889      9998765

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.43  E-value=3.8e-13  Score=110.03  Aligned_cols=88  Identities=10%  Similarity=0.120  Sum_probs=74.8

Q ss_pred             CCCCceEEccc-CceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcc------------eeeeecccccCCCCCC
Q 024881           76 ANTSQYEFSDG-SAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF------------ITLIETNQLFDKIKPT  142 (261)
Q Consensus        76 ~~t~~Y~wTqt-l~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~------------~tlId~g~L~~kIk~~  142 (261)
                      ....+|.|.|+ .++|.|+|.++.   ...+|+.|+++.++|+|.++..+.-            .-.++ .+||++|.|+
T Consensus        17 ~~~~r~~W~Qt~~~~V~vtI~~k~---v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~-~~L~~~I~pe   92 (134)
T 1wh0_A           17 LAFVKNDSYEKGPDSVVVHVYVKE---ICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQ-VKLRNLIEPE   92 (134)
T ss_dssp             ESCCCEEEEEETTTEEEEEEECCS---BCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEE-EEBSSCEEEE
T ss_pred             ccCCCeEEEcCCCCEEEEEEEeCC---CCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEe-ccccccCCch
Confidence            34569999999 999999999986   6789999999999999999866421            23366 7899999999


Q ss_pred             ceeeEEecCeEEEEEEecCCCCCCcc
Q 024881          143 ETIWYIDEDQLVINLKKQDPELKWPD  168 (261)
Q Consensus       143 Et~W~IdD~~lvv~L~K~d~~m~Wp~  168 (261)
                      +|.|.+.+..|.|.|+|.++ +.||.
T Consensus        93 ~S~~~v~~~kIeI~L~K~e~-~~W~~  117 (134)
T 1wh0_A           93 QCTFCFTASRIDICLRKRQS-QRWGG  117 (134)
T ss_dssp             EEEEEECSSEEEEEEEESSS-CCCSC
T ss_pred             hCEEEEeCCEEEEEEEECCC-Ccccc
Confidence            99999999999999999987 65543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.42  E-value=1e-13  Score=109.83  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=61.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      .+|+.|+|+|++||||||+|+.||+.||+.++|+|+++.+.      .|+.|.++|.. |+..|++.+.+++++..
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l   76 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREEL   76 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHh
Confidence            46889999999999999999999999999999999999876      56788999875 99999999988887754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.39  E-value=8.4e-14  Score=109.62  Aligned_cols=65  Identities=17%  Similarity=0.012  Sum_probs=54.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHHhCC--------CHHHHHHhhCchhHHhhHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQ--------TIDSWMLAEGSDSVVNGECDVL  249 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~agk--------SI~eIFaeeGE~~FRelEs~VL  249 (261)
                      +|..|+|+|+|||||||+|+.||++||+.|++  +|++++...++        ++.++|...|++.||.+|..+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWA   76 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHH
Confidence            57789999999999999999999999998875  99999987764        3445556667899999987764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.37  E-value=3.7e-13  Score=111.45  Aligned_cols=69  Identities=14%  Similarity=0.087  Sum_probs=62.2

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      .+|+.|+|+|++||||||+|+.||+.|||.++|+|+++++.      .|+.|.++|.. |+..|++++.+++.+..
T Consensus         3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l   77 (217)
T 3be4_A            3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES-GNFVGDEIVLGLVKEKF   77 (217)
T ss_dssp             GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHH-TCCCCHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHC-CCcCCHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999987      68889999875 89999999988887643

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.37  E-value=5.9e-13  Score=111.64  Aligned_cols=75  Identities=19%  Similarity=0.111  Sum_probs=49.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC-H-HHHHHhhCchh--HH-----------------
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT-I-DSWMLAEGSDS--VV-----------------  242 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS-I-~eIFaeeGE~~--FR-----------------  242 (261)
                      ++..-|.|.|+|||||||||+.||++|||+|+| +++++.++.++ + .++|+..||..  |+                 
T Consensus         4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   82 (201)
T 3fdi_A            4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDI   82 (201)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHH
Confidence            345679999999999999999999999999999 88888765433 2 37889899987  45                 


Q ss_pred             -hhHHHHHHHHh--cccCCc
Q 024881          243 -NGECDVLESLI--MFEPLL  259 (261)
Q Consensus       243 -elEs~VLeels--~~~~lv  259 (261)
                       +.|.+++.+++  ...+.|
T Consensus        83 ~~~~~~~i~~la~~~~~~~V  102 (201)
T 3fdi_A           83 AIRQFNFIRKKANEEKESFV  102 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCCEE
T ss_pred             HHHHHHHHHHHHhhcCCCEE
Confidence             78999999998  655543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=99.36  E-value=2e-14  Score=134.19  Aligned_cols=75  Identities=13%  Similarity=0.086  Sum_probs=64.8

Q ss_pred             HHHHHHhhc-CC--ceEEEEecCCCchhHHHHHHHHhcCCCc--------------------cCcHHHHHHHhCCCHHHH
Q 024881          176 LTAGSMQLL-KG--TSIFLVGDSTEVNEKVALELAVGLGYTP--------------------LSTKELLETFAKQTIDSW  232 (261)
Q Consensus       176 l~~g~~~lL-kG--~sIyLVGmmGsGKSTVGr~LA~~LgY~f--------------------vDTDeLIEq~agkSI~eI  232 (261)
                      +.+.+...+ +|  .+|+|+|+||+||||+|+.||+.|||.|                    +|+|++||+.+|++|.+|
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i   90 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM   90 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence            334444333 34  3599999999999999999999999999                    999999999999999999


Q ss_pred             HHhhCchhHHhhHHHHHHH
Q 024881          233 MLAEGSDSVVNGECDVLES  251 (261)
Q Consensus       233 FaeeGE~~FRelEs~VLee  251 (261)
                      |++.|| .||++|.+.+..
T Consensus        91 f~~~ge-~fr~~E~~~~~~  108 (359)
T 2ga8_A           91 IENQGL-FKDHVEDVNFQP  108 (359)
T ss_dssp             HHTTTC-CGGGTTCTTCCC
T ss_pred             HHHhcc-cchHHHhhhccc
Confidence            999999 999999876543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.34  E-value=7.8e-13  Score=104.92  Aligned_cols=68  Identities=25%  Similarity=0.305  Sum_probs=59.2

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH------HhCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNGECDVLESL  252 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq------~agkSI~eIFaeeGE~~FRelEs~VLeel  252 (261)
                      .+|..|+|+|++||||||+|+.||+.||+.++|+|+++.+      ..|+.|.++|. +|+..|+++..+.+.+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~   80 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDA   80 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999988      45778889987 69988888776666554

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=99.33  E-value=5e-13  Score=108.38  Aligned_cols=90  Identities=16%  Similarity=0.308  Sum_probs=72.3

Q ss_pred             CCceEEcccCce-------EEEEEecCCcccccccceEEEeeCCEEEEEEccCC------cceeeeecccccCCCCCCce
Q 024881           78 TSQYEFSDGSAE-------IELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG------SFITLIETNQLFDKIKPTET  144 (261)
Q Consensus        78 t~~Y~wTqtl~E-------vEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~------~~~tlId~g~L~~kIk~~Et  144 (261)
                      ++.|.|.|+.++       |.|+|+++.     .+|+.|+++.++|.|.+++.+      .-.-.++ .+||++|.|++|
T Consensus         6 ~p~~~W~Q~~~~~~~~k~~V~ltI~~~~-----~~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~-l~L~~~Idpe~S   79 (134)
T 2cg9_X            6 NPQVAWAQRSSTTDPERNYVLITVSIAD-----CDAPELTIKPSYIELKAQSKPHVGDENVHHYQLH-IDLYKEIIPEKT   79 (134)
T ss_dssp             -----CBCCCEEECCCSSEEEEECCCSS-----EESCCCCBCSSEEEECCEEC-------CEEBCEE-EECSSCCCSSSE
T ss_pred             CCCEEEEeCCCCcCCcCCEEEEEEEecC-----CCceEEEEECCEEEEEEecccccCCccCceEEEE-EEChhhcccccc
Confidence            468999999999       999999988     259999999999999988754      1223477 799999999999


Q ss_pred             eeEEecCe-EEEEEEecCCCCCCcccccchhHHHHH
Q 024881          145 IWYIDEDQ-LVINLKKQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       145 ~W~IdD~~-lvv~L~K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      .|.+.+.. |.|.|+|.++++.|      |++|+++
T Consensus        80 ~~~v~~~~~vei~L~K~~~~~~~------W~rL~k~  109 (134)
T 2cg9_X           80 MHKVANGQHYFLKLYKKDLESEY------WPRLTKE  109 (134)
T ss_dssp             EEEECCC--CEEEEEECSSSSCC------CSCSSSS
T ss_pred             EEEECCCEEEEEEEEECCCCCCC------CCceecC
Confidence            99999987 99999999966889      9998865

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.33  E-value=7.9e-13  Score=108.80  Aligned_cols=69  Identities=13%  Similarity=0.116  Sum_probs=61.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels~  254 (261)
                      +|+.|+|+|+|||||||+|+.||+.||+.++|+|+++.+.      .|+.|.++|. +|+..|++++.+++.+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~   77 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELT   77 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999976      5677888886 6888999999888877653

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.31  E-value=9.8e-13  Score=110.51  Aligned_cols=56  Identities=11%  Similarity=0.039  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV  242 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FR  242 (261)
                      ..|.|+|+|||||||||+.||+.||++++|+|+++++..+..+.+|++.-|++.|+
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~   68 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE   68 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcC
Confidence            46999999999999999999999999999999999999999999999999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.29  E-value=2.7e-12  Score=102.05  Aligned_cols=66  Identities=26%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES  251 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLee  251 (261)
                      ++..|+|+|++||||||+|+.||+.||+.++|+|+++.+..      |+.|.++|. +|+..|+++....+.+
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~   82 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKE   82 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHH
Confidence            57789999999999999999999999999999999998766      677888886 5888787765555544

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.28  E-value=7e-13  Score=107.23  Aligned_cols=69  Identities=19%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             HhhcCCceEEEEecCCCchhHHHHHHHHh-cCCCccCcHHHHHHHhCCCHHHHHHhhCchhHH--hhHHHHHHHH
Q 024881          181 MQLLKGTSIFLVGDSTEVNEKVALELAVG-LGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV--NGECDVLESL  252 (261)
Q Consensus       181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~-LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FR--elEs~VLeel  252 (261)
                      +...+|.+|+|+|+|||||||+|+.||+. +||.++|+|+++++.   .+.+.|.++++..|+  +.|..+++.+
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~---~~~~~~~~~~~~~~~~r~~~~~~~~~l   76 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN---HFYTEYDTELDTHIIEEKDEDRLLDFM   76 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT---TCSCC------CCCCCHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh---hhhhhHHHHhhhcccCCCCHHHHHHHH
Confidence            34567899999999999999999999999 799999999999985   223334455555554  4455555444

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.26  E-value=3.3e-12  Score=103.46  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=61.3

Q ss_pred             HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881          179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESL  252 (261)
Q Consensus       179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeel  252 (261)
                      |...-.+|+.|+|+|++||||||+++.||+.||+.++|+|+++.+.      .|+.+.++|. +|+..|++.+..++.+.
T Consensus        13 ~~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~   91 (201)
T 2cdn_A           13 GLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDR   91 (201)
T ss_dssp             ---CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHH
T ss_pred             cccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHH
Confidence            3445567889999999999999999999999999999999999873      4566778875 68889999988888775


Q ss_pred             h
Q 024881          253 I  253 (261)
Q Consensus       253 s  253 (261)
                      .
T Consensus        92 ~   92 (201)
T 2cdn_A           92 L   92 (201)
T ss_dssp             T
T ss_pred             H
Confidence            4

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.25  E-value=3.7e-12  Score=100.08  Aligned_cols=67  Identities=24%  Similarity=0.329  Sum_probs=55.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh-------CCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-------KQTIDSWMLAEGSDSVVNGECDVLES  251 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a-------gkSI~eIFaeeGE~~FRelEs~VLee  251 (261)
                      ++|..|.|+|++||||||+++.||+.||+.++|+|+++++..       |+.+.+++. +|+..|++++...|.+
T Consensus         1 M~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~   74 (196)
T 1tev_A            1 MKPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKR   74 (196)
T ss_dssp             --CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHH
Confidence            367889999999999999999999999999999999998765       445667765 7988888877666644

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.22  E-value=6.3e-12  Score=104.15  Aligned_cols=66  Identities=11%  Similarity=0.051  Sum_probs=56.6

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCchhHHhhHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLE  250 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE~~FRelEs~VLe  250 (261)
                      -+++.|+|+|++||||||+++.||+.||+.++|+|+++.+..      |+.|.++|.. |+..|++.+...+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~   76 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLAL   76 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHH
Confidence            356789999999999999999999999999999999999866      7788888865 88889988776554

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.22  E-value=7.2e-12  Score=104.75  Aligned_cols=71  Identities=18%  Similarity=0.180  Sum_probs=60.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      ...++++|+|+|++||||||+|+.||+.||+.++|+|+++++.      .|+.|.+++. .|+..+++++.+++.+..
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l   88 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMD-AGKLVSDEMVLELIEKNL   88 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHH-CCCcCCHHHHHHHHHHHH
Confidence            3346789999999999999999999999999999999999883      5677888884 588889999988887654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.22  E-value=8.7e-12  Score=102.73  Aligned_cols=59  Identities=10%  Similarity=0.079  Sum_probs=50.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH------HhCCCHHHHHHhhCchhHHhh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNG  244 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq------~agkSI~eIFaeeGE~~FRel  244 (261)
                      +++.|+|+|+|||||||+|+.||+.||+.++|+|+++++      ..|+.|.++|. +|+..+++.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~   68 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFME-KGQLVPDEI   68 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHH-cCCcCCHHH
Confidence            467899999999999999999999999999999999988      46778889986 476554443

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.21  E-value=7.4e-12  Score=98.22  Aligned_cols=67  Identities=16%  Similarity=0.242  Sum_probs=57.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      +..|.|+|++||||||+++.||+.||+.++|+|+++.+.      .|+.|.++|. +|+..|++++...|.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i   78 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIK-NGEIVPSIVTVKLLKNAI   78 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHH-TTCCCCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Confidence            457999999999999999999999999999999998876      3566778886 588888888888877664

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.19  E-value=1.2e-11  Score=101.26  Aligned_cols=58  Identities=14%  Similarity=0.123  Sum_probs=51.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVVN  243 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~FRe  243 (261)
                      ++..|.|+|++||||||+++.||+ |||.++|+|+++.+..   +..+.+|+...|+..|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~   63 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAA   63 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCC
Confidence            467899999999999999999999 9999999999999875   456889999999988863

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.18  E-value=1.8e-11  Score=96.89  Aligned_cols=59  Identities=15%  Similarity=0.124  Sum_probs=48.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV  248 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~V  248 (261)
                      +|..|+|+|+|||||||+++.||+.|||.++|+|.+.+...+.     +..++++.+++++..+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~-----~~~~~~~~~~~~~~~~   62 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDG-----LGWSDREWSRRVGATA   62 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHH-----HCCCSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHh-----cCccchHHHHHhhHHH
Confidence            5778999999999999999999999999999999999887652     2334566677776543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.18  E-value=4.1e-12  Score=100.97  Aligned_cols=65  Identities=17%  Similarity=0.129  Sum_probs=54.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhh--HHHHHHHH
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNG--ECDVLESL  252 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRel--Es~VLeel  252 (261)
                      ...++.+|+|+|+||+||||+++.||+.||+.++|+|+++++.      ++|...|++.|+.+  |..+++.+
T Consensus         7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~   73 (180)
T 3iij_A            7 EFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE------QLYDGYDEEYDCPILDEDRVVDEL   73 (180)
T ss_dssp             TTCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH------TCEEEEETTTTEEEECHHHHHHHH
T ss_pred             ccccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc------chhhhhhhhhcCccCChHHHHHHH
Confidence            3457889999999999999999999999999999999999987      56778888888776  54455543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.17  E-value=7.8e-12  Score=101.97  Aligned_cols=67  Identities=13%  Similarity=0.147  Sum_probs=54.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH--------hCCCHHHH-------HH----------hhCc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF--------AKQTIDSW-------ML----------AEGS  238 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~--------agkSI~eI-------Fa----------eeGE  238 (261)
                      |++..|.|+|++||||||+|+.||+.|||.++|+|+++++.        .++.|.++       |.          .+|+
T Consensus         1 m~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~   80 (219)
T 2h92_A            1 MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNE   80 (219)
T ss_dssp             --CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCc
Confidence            35778999999999999999999999999999999998764        24678777       53          5799


Q ss_pred             hhHHhhHHHHHH
Q 024881          239 DSVVNGECDVLE  250 (261)
Q Consensus       239 ~~FRelEs~VLe  250 (261)
                      ..|++++...+.
T Consensus        81 ~~~~~~~~~~~~   92 (219)
T 2h92_A           81 DVTDFLRNNDVT   92 (219)
T ss_dssp             ECGGGSSSSHHH
T ss_pred             cchhhcCcHHHH
Confidence            888887655443

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.16  E-value=9.9e-12  Score=100.31  Aligned_cols=63  Identities=21%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhHH---hhHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV---NGECDVLES  251 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~FR---elEs~VLee  251 (261)
                      .|.|+|+|||||||+++.||+ +|+.++|+|+++++..   +..+++++...|++.|+   +++...|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~   71 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLAD   71 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHH
Confidence            699999999999999999999 9999999999999876   45688999999998886   566666654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.16  E-value=1.8e-11  Score=97.58  Aligned_cols=61  Identities=20%  Similarity=0.137  Sum_probs=48.8

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh-CCCHHHHHHhhCchhHH--hhHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVV--NGECDVL  249 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a-gkSI~eIFaeeGE~~FR--elEs~VL  249 (261)
                      ...|.|+|+|||||||+|+.||+. ||.++|+|+++++.. |.+ .++++.- ++.|+  ++|...|
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~-~~i~~~~-~~~~~~g~i~~~~l   71 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKE-EELKRLF-PEAVVGGRLDRRAL   71 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTH-HHHHHHC-GGGEETTEECHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChH-HHHHHHH-HHHHhCCCcCHHHH
Confidence            456999999999999999999999 999999999998887 655 6666655 56655  4444444

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.14  E-value=3.4e-11  Score=91.80  Aligned_cols=63  Identities=13%  Similarity=0.043  Sum_probs=54.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC----------HHHHHHhhCchhHHhhHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT----------IDSWMLAEGSDSVVNGECDVLE  250 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS----------I~eIFaeeGE~~FRelEs~VLe  250 (261)
                      +.|+|+|++||||||+++.| +.+||.++|+|+++.+..+..          ..+++...|++.|++++.+.|.
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   74 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELG   74 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            36999999999999999999 999999999999999876442          5667777899999999888774

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.13  E-value=2.1e-11  Score=98.87  Aligned_cols=56  Identities=11%  Similarity=0.079  Sum_probs=48.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVVN  243 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~FRe  243 (261)
                      ..|.|+|+|||||||+++.||+ |||.++|+|++..+..   +.++.+|++..|++.|+.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~   61 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTE   61 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC--
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhcc
Confidence            3699999999999999999998 9999999999987753   357889999999988874

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.10  E-value=2.3e-11  Score=95.79  Aligned_cols=55  Identities=13%  Similarity=-0.016  Sum_probs=42.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCcc-CcHHHHHHHhCCCHHHHHHhhCchhHHhhH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAKQTIDSWMLAEGSDSVVNGE  245 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv-DTDeLIEq~agkSI~eIFaeeGE~~FRelE  245 (261)
                      +|+.|+|+|++||||||+|+.||+.||+.++ |.|     ..|..|.++|. +|++.|++.|
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~-----~~g~~i~~~~~-~g~~~~~~~~   59 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPE-----EMGQALRKLTP-GFSGDPQEHP   59 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTH-----HHHHHHHHTST-TCCSCGGGST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchh-----hhHHHHHHhCc-cccchhhhhH
Confidence            6788999999999999999999999999999 753     34567888888 8888888654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.07  E-value=1.9e-10  Score=92.78  Aligned_cols=66  Identities=20%  Similarity=0.211  Sum_probs=53.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH---hCCC----HHHHHHhhCchhHHhhHHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF---AKQT----IDSWMLAEGSDSVVNGECDVLESL  252 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~---agkS----I~eIFaeeGE~~FRelEs~VLeel  252 (261)
                      +..|.|+|++||||||+++.||+.||+.++|+|+++.+.   .|..    +.+++. +|+..|++++...+.+.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~   87 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNA   87 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHH
Confidence            457999999999999999999999999999999999876   3443    445544 78888888777766554

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.06  E-value=8.8e-11  Score=92.65  Aligned_cols=65  Identities=17%  Similarity=0.054  Sum_probs=52.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH-----HH-HhCCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL-----ET-FAKQTIDSWMLAEGSDSVVNGECDVLES  251 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI-----Eq-~agkSI~eIFaeeGE~~FRelEs~VLee  251 (261)
                      .+|..|.|+|++||||||+++.||..+|+.++|+|++.     ++ ..|..+.+   .+|+..|+.+|..+.+.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~   76 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLND---DDRKPWLQALNDAAFAM   76 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCc---cccccHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999984     33 45766654   46778899998755433

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.02  E-value=5.5e-11  Score=95.11  Aligned_cols=63  Identities=22%  Similarity=0.180  Sum_probs=51.9

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCC------HH-----------------HHHHhhCc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQT------ID-----------------SWMLAEGS  238 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkS------I~-----------------eIFaeeGE  238 (261)
                      .|.|.|++||||||||+.||+.|||+++|+|++.+...      |.+      +.                 ++| .+|+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~   82 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVL-ADGE   82 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEE-ETTE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEE-ECCe
Confidence            69999999999999999999999999999999998763      553      22                 233 4788


Q ss_pred             hhHHhhHHHHHHH
Q 024881          239 DSVVNGECDVLES  251 (261)
Q Consensus       239 ~~FRelEs~VLee  251 (261)
                      ..||++|.+.+.+
T Consensus        83 ~v~~~~~~~~~~~   95 (208)
T 3ake_A           83 DLTSFLHTPEVDR   95 (208)
T ss_dssp             ECGGGSSSHHHHH
T ss_pred             eCchhhChHHHHH
Confidence            8999888877664

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.02  E-value=1.6e-10  Score=90.77  Aligned_cols=63  Identities=11%  Similarity=-0.006  Sum_probs=48.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHHHHh---CC--CHHHHHHhhCchhHHhhHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFA---KQ--TIDSWMLAEGSDSVVNGECDV  248 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIEq~a---gk--SI~eIFaeeGE~~FRelEs~V  248 (261)
                      +|+.|+|+|++||||||+++.||+.||     |.++|+|+++.+..   |.  ++++++. ..++.++.+|..+
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   74 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMA   74 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHH
Confidence            578899999999999999999999999     99999999876543   33  5555543 2355667777654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.02  E-value=1.6e-10  Score=96.44  Aligned_cols=66  Identities=5%  Similarity=0.039  Sum_probs=55.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      +.|+|+|++||||||+++.||+.||+.++|+|+++.+.      .|+.|.+++. +|+-.|+++..+++.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l   72 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETL   72 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHH
Confidence            36999999999999999999999999999999999886      4556777764 688788887777666543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.00  E-value=1.5e-10  Score=90.19  Aligned_cols=67  Identities=12%  Similarity=0.136  Sum_probs=55.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHH-hcCCCccCcHHHHHHHhCCCHH--HHHHhhCchhHHhhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAV-GLGYTPLSTKELLETFAKQTID--SWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~-~LgY~fvDTDeLIEq~agkSI~--eIFaeeGE~~FRelEs~VLeels  253 (261)
                      ..|.|+|++||||||+++.||+ .+||.++|+|.+.+...+.+..  +.+..+++..++++..+++.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   72 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSIL   72 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHH
Confidence            4689999999999999999999 7999999999999988875443  23456778888888777777665

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.00  E-value=3.7e-10  Score=92.76  Aligned_cols=64  Identities=17%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLES  251 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLee  251 (261)
                      ++|+|+|++||||||+++.||+.|||.++|+|+++.+.      .|+.|.++|.. |+...+++..+++.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~   70 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA-GKLVTDELVIALVKE   70 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHH-TCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHH
Confidence            47999999999999999999999999999999999883      57778888864 554444444444433

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.99  E-value=2.4e-10  Score=109.12  Aligned_cols=66  Identities=18%  Similarity=0.194  Sum_probs=58.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCc-----HHHHHHHhCC-CHHHHHHhhCchhHHhhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST-----KELLETFAKQ-TIDSWMLAEGSDSVVNGECDVLESL  252 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT-----DeLIEq~agk-SI~eIFaeeGE~~FRelEs~VLeel  252 (261)
                      .-|+|||+|||||||+|+.||+.||+.++|+     |+++++..|. .+.++|..+|+++|+..|..++..+
T Consensus        36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l  107 (520)
T 2axn_A           36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAAL  107 (520)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999888766     9999999987 5789999999999998887765554

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.99  E-value=1.5e-10  Score=107.50  Aligned_cols=68  Identities=18%  Similarity=0.197  Sum_probs=59.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH-----HHHHHhCC-CHHHHHHhhCchhHHhhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE-----LLETFAKQ-TIDSWMLAEGSDSVVNGECDVLESL  252 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe-----LIEq~agk-SI~eIFaeeGE~~FRelEs~VLeel  252 (261)
                      +...|+|||+||+||||+|+.||+.|++.++|+|.     ++++..|. ...+||..+|+++||..|..+++.+
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l  111 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAAL  111 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHH
Confidence            34579999999999999999999999999988876     88898887 5679999999999999988876665

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.97  E-value=4.6e-10  Score=97.25  Aligned_cols=64  Identities=17%  Similarity=0.100  Sum_probs=55.1

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh---CCCHHHHHHhhCchhHH---hhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV---NGECDVLESL  252 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a---gkSI~eIFaeeGE~~FR---elEs~VLeel  252 (261)
                      -|-|+|.||||||||++.|++ +||+++|+|++..++.   +..+.+|++.-|++.|.   ++..+.|.++
T Consensus        11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~   80 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRAL   80 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHH
Confidence            388999999999999999999 9999999999988776   67899999999999985   3555555554

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.96  E-value=3.4e-10  Score=96.38  Aligned_cols=78  Identities=13%  Similarity=0.026  Sum_probs=62.7

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC--CCccCcHHH---------HHHHhCCCHHHHHHhhCchhH
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKEL---------LETFAKQTIDSWMLAEGSDSV  241 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDTDeL---------IEq~agkSI~eIFaeeGE~~F  241 (261)
                      |..+..+....-+|..|+|+|+|||||||+++.||+.||  |.++|.|.+         |++..|.++.++++.    .+
T Consensus        19 ~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~----~~   94 (253)
T 2p5t_B           19 LRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKD----FA   94 (253)
T ss_dssp             HHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHH----HH
T ss_pred             HHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhH----HH
Confidence            555666656566788899999999999999999999997  788999998         788889999988764    25


Q ss_pred             HhhHHHHHHHHhc
Q 024881          242 VNGECDVLESLIM  254 (261)
Q Consensus       242 RelEs~VLeels~  254 (261)
                      ++++..+++++..
T Consensus        95 ~~~~~~~~~~~~~  107 (253)
T 2p5t_B           95 GKMVESLVTKLSS  107 (253)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            5666777777654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.96  E-value=3.5e-10  Score=96.85  Aligned_cols=64  Identities=13%  Similarity=0.078  Sum_probs=56.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh---cCCCcc--CcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG---LGYTPL--STKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~---LgY~fv--DTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~  254 (261)
                      ++..|+|+|++||||||+|+.||+.   +||.++  |.|.+.+...+      |...||..|+.++.+++++...
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~------~~~~~e~~~~~~~~~~i~~~l~   71 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV------WKEKYEEFIKKSTYRLIDSALK   71 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS------CCGGGHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh------hhHHHHHHHHHHHHHHHHHHhh
Confidence            4668999999999999999999998   899998  99999987766      6778999999999888777654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.94  E-value=7.6e-11  Score=94.28  Aligned_cols=54  Identities=13%  Similarity=0.132  Sum_probs=46.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc-CCCccCcHHHH-HHHhCCCHHHHHHhhC
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL-ETFAKQTIDSWMLAEG  237 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLI-Eq~agkSI~eIFaeeG  237 (261)
                      .+|+.|+|+|+|||||||+++.||+.| ||.++|+++.. +...|+.|.++|...|
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~   57 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKK   57 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCC
Confidence            378899999999999999999999999 79999998876 5666777999997654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.93  E-value=8.9e-11  Score=108.78  Aligned_cols=73  Identities=7%  Similarity=0.019  Sum_probs=67.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH--------------HHHHhCC-----CHHHH-HHhhCchhHHhh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSW-MLAEGSDSVVNG  244 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL--------------IEq~agk-----SI~eI-FaeeGE~~FRel  244 (261)
                      ++..|+|+|+||+||||+|..||++||..+||+|.+              +|+..|.     +|.++ ++..+++.|++.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~  118 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL  118 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence            556799999999999999999999999999999999              8999999     89999 899999999999


Q ss_pred             HHHHHHHHhcccC
Q 024881          245 ECDVLESLIMFEP  257 (261)
Q Consensus       245 Es~VLeels~~~~  257 (261)
                      +.++++++....+
T Consensus       119 a~~~i~~i~~~g~  131 (339)
T 3a8t_A          119 AGKAVSEITGRRK  131 (339)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999976554

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.93  E-value=4.5e-10  Score=86.82  Aligned_cols=45  Identities=18%  Similarity=0.147  Sum_probs=39.4

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWML  234 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFa  234 (261)
                      .|+|+|++||||||+++.||++|||.++|.|.+++...  .+.++|+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--~~~~~~~   47 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--GNEKLFE   47 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--CHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--HHHHHHH
Confidence            69999999999999999999999999999999988765  3555553

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.92  E-value=5.4e-10  Score=93.52  Aligned_cols=42  Identities=24%  Similarity=0.284  Sum_probs=38.6

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~  224 (261)
                      ..+|..|.|+|+|||||||+|+.||+.|||.++|+|+++...
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~   54 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   54 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence            357889999999999999999999999999999999999864

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.91  E-value=1.3e-09  Score=93.87  Aligned_cols=72  Identities=17%  Similarity=0.116  Sum_probs=46.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHH-HHHHhhCchhH------------------------
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID-SWMLAEGSDSV------------------------  241 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~-eIFaeeGE~~F------------------------  241 (261)
                      .-|.+.|++||||||||+.||++|||+|+|.|.+-+.+...-++ ++|...+|..+                        
T Consensus        15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (223)
T 3hdt_A           15 LIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPNDK   94 (223)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC---------------------------------------
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccccc
Confidence            45999999999999999999999999999966655544444354 56766666532                        


Q ss_pred             -------HhhHHHHHHHHhcccCC
Q 024881          242 -------VNGECDVLESLIMFEPL  258 (261)
Q Consensus       242 -------RelEs~VLeels~~~~l  258 (261)
                             ++.|++++.+++...+.
T Consensus        95 ~~~~~~~f~~~~~~i~~la~~~~~  118 (223)
T 3hdt_A           95 LTSPENLFKFQSEVMRELAESEPC  118 (223)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHSCE
T ss_pred             cccHHHHHHHHHHHHHHHHhCCCE
Confidence                   35678899999876554

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.91  E-value=9.7e-10  Score=89.37  Aligned_cols=65  Identities=14%  Similarity=0.089  Sum_probs=50.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESL  252 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeel  252 (261)
                      ++|.|+|++||||||+++.||+.+|+.++|+|+++.+.      .|+.+.++|.. |+....++..+++.+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~   71 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHER   71 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Confidence            46999999999999999999999999999999999873      44556666644 6555555555554443

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.89  E-value=1.2e-09  Score=89.16  Aligned_cols=64  Identities=11%  Similarity=0.115  Sum_probs=49.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH------HhCCCHHHHHHhhCchhHHhhHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNGECDVLES  251 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq------~agkSI~eIFaeeGE~~FRelEs~VLee  251 (261)
                      ++|.|+|++||||||+++.||+.+|+.++|+|+++.+      ..|+.+.++|. +|+....++..+++.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~   70 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTIGIVKE   70 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Confidence            4799999999999999999999999999999999987      34555677764 4554455554444433

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=98.87  E-value=7.9e-09  Score=85.62  Aligned_cols=82  Identities=15%  Similarity=0.211  Sum_probs=69.0

Q ss_pred             CCceEEcccCceEEEEEecCCcccccccceEEEee-CCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEE
Q 024881           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDAD-GTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (261)
Q Consensus        78 t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~-~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~  156 (261)
                      ++.|.|.|+...|-|.|.++.     .+++.|+++ .++|.|..++...-.-.++ .+||++|.|+ |.|.+....|.|.
T Consensus         4 ~P~~~W~Qt~~~V~ltI~l~~-----~~~v~V~~~~~~~l~~~~~~~~~~~y~~~-l~L~~~Idpe-S~~~v~~~kIei~   76 (150)
T 2kmw_A            4 NPEVLWAQRSDKVYLTVALPD-----AKDISVKCEPQGLFSFSALGAQGERFEFS-LELYGKIMTE-YRKNVGLRNIIFS   76 (150)
T ss_dssp             CCCEEEEECSSEEEEEECCSS-----EEEEEECCCTTEEEEEEEETTTTEEEEEE-EEBSSCEEEE-EEEEEESSSEEEE
T ss_pred             CCcEEEEeCCCEEEEEEEeCC-----CCceEEEEecCCEEEEEEEcCCCceEEEE-eEhhhccccc-ceEEecCCEEEEE
Confidence            358999999999999999988     268999999 8999999884333333477 6899999999 9999999999999


Q ss_pred             EEecCCCCCCc
Q 024881          157 LKKQDPELKWP  167 (261)
Q Consensus       157 L~K~d~~m~Wp  167 (261)
                      |+|.++ ..||
T Consensus        77 L~K~e~-~~W~   86 (150)
T 2kmw_A           77 IQKEER-SWWT   86 (150)
T ss_dssp             EEECCS-SCCS
T ss_pred             EEECCC-CcCc
Confidence            999987 4443

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.84  E-value=2.2e-09  Score=87.46  Aligned_cols=71  Identities=10%  Similarity=-0.076  Sum_probs=53.1

Q ss_pred             HhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH-----H-HhCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE-----T-FAKQTIDSWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE-----q-~agkSI~eIFaeeGE~~FRelEs~VLeels~  254 (261)
                      +..-+|..|.|+|+|||||||+++.||..+|+.++|.|++.+     + ..|..+.+   .++...|+.+|..++..+..
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~  100 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTD---EDRWPWLRSLAEWMDARADA  100 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCC---cccccHHHHHHHHHHHHHhc
Confidence            444578899999999999999999999999999999999742     2 34555443   34556778888887766554

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.76  E-value=8.8e-10  Score=86.72  Aligned_cols=52  Identities=19%  Similarity=0.045  Sum_probs=43.0

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc---CCCccCcHHHHHHHhCCCHHHHHHhhCchh
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWMLAEGSDS  240 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDTDeLIEq~agkSI~eIFaeeGE~~  240 (261)
                      .|.|.|++||||||+++.||+.|   ||.++|+|+..+...|+.+.++|.+ |+-.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~-g~~~   56 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLT-EELD   56 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHH-SCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcC-CCCC
Confidence            58999999999999999999999   9999999976555556667788764 6533

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.71  E-value=8.1e-09  Score=88.25  Aligned_cols=46  Identities=17%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH------HhCCCH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTI  229 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq------~agkSI  229 (261)
                      -+|..|.|+|+|||||||+++.||++|||.++|+++++..      ..|..+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~   76 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI   76 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence            3688899999999999999999999999999999999944      446555

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.71  E-value=2.6e-09  Score=84.94  Aligned_cols=62  Identities=15%  Similarity=0.086  Sum_probs=44.6

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc---CCCccCcHHHHHHHhCCCHHHHH-HhhCchhHHhhHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGEC  246 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDTDeLIEq~agkSI~eIF-aeeGE~~FRelEs  246 (261)
                      .+|..|.|+|+|||||||+++.||..|   ||+++++|..+... +......| .+++++.|++++.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   68 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-GLNKNLGFSPEDREENVRRIAE   68 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH-HHhhccccccccHHHHHHHHHH
Confidence            368899999999999999999999999   99999666443321 11111122 2567788888874

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.70  E-value=1.6e-09  Score=87.68  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=33.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI  221 (261)
                      ++.|.|+|++||||||+++.||+.||+.++|+|+++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~   53 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALH   53 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCc
Confidence            457999999999999999999999999999999985

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.70  E-value=9.6e-09  Score=83.59  Aligned_cols=45  Identities=13%  Similarity=0.186  Sum_probs=39.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTID  230 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~  230 (261)
                      +..|.|+|++||||||+++.||+.+||+++|+|+++.+.      .|..++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~   55 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVA   55 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCcc
Confidence            567999999999999999999999999999999999864      466553

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.69  E-value=1.6e-09  Score=91.70  Aligned_cols=65  Identities=14%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCC----------ccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHH-------HHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC-------DVL  249 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~----------fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs-------~VL  249 (261)
                      ..|.|.|++||||||+|+.||+.||+.          ++|+|+++......+++  +...|+-.|+..|+       +.|
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~--~~~~g~~~f~~~~~~d~~~l~~~L  100 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKA--KALKGQFNFDHPDAFDNELILKTL  100 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHH--HHHTTCSCTTSGGGBCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhh--hhccCCCCCCCcchhhHHHHHHHH
Confidence            469999999999999999999999998          69999998643322333  56678877877666       778


Q ss_pred             HHHh
Q 024881          250 ESLI  253 (261)
Q Consensus       250 eels  253 (261)
                      +++.
T Consensus       101 ~~l~  104 (252)
T 1uj2_A          101 KEIT  104 (252)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.68  E-value=1.7e-08  Score=81.01  Aligned_cols=35  Identities=20%  Similarity=0.091  Sum_probs=31.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      .+|+.|+|+|.+||||||+++.||+.||+.++|+|
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~   42 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK   42 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence            46889999999999999999999999998888773

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.68  E-value=3.4e-09  Score=84.15  Aligned_cols=56  Identities=21%  Similarity=0.312  Sum_probs=43.2

Q ss_pred             HhhcCCceEEEEecCCCchhHHHHHHHHhcCCC--ccCcHHHHHHHhCCCHHHHHHhh
Q 024881          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLETFAKQTIDSWMLAE  236 (261)
Q Consensus       181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDTDeLIEq~agkSI~eIFaee  236 (261)
                      ++.-+|..|.|+|+|||||||+++.||..+++.  ++|.|++.+......+..++.++
T Consensus         4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~   61 (191)
T 1zp6_A            4 TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQS   61 (191)
T ss_dssp             --CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccch
Confidence            456678999999999999999999999998776  89999998765544444444433

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.67  E-value=1.1e-08  Score=80.02  Aligned_cols=38  Identities=11%  Similarity=-0.014  Sum_probs=35.1

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFA  225 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIEq~a  225 (261)
                      .|+|+|++||||||+++.||++||     +.++|+|+++.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~   45 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA   45 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence            699999999999999999999999     89999999987655

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.65  E-value=3e-09  Score=97.63  Aligned_cols=70  Identities=16%  Similarity=0.097  Sum_probs=60.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCC--------------------HHHHHHhhCchhHHhhHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT--------------------IDSWMLAEGSDSVVNGEC  246 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkS--------------------I~eIFaeeGE~~FRelEs  246 (261)
                      ..|+|+|++|+||||+|+.||+++|+.++|.|.++... |.+                    +.+++...+++.|++.+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~   84 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-GMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADAL   84 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-TCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-CCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHH
Confidence            46999999999999999999999999999999986433 444                    456778889999999999


Q ss_pred             HHHHHHhcccC
Q 024881          247 DVLESLIMFEP  257 (261)
Q Consensus       247 ~VLeels~~~~  257 (261)
                      ++++++....+
T Consensus        85 ~~i~~i~~~g~   95 (323)
T 3crm_A           85 AAMAKATARGR   95 (323)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            99999876544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.64  E-value=4.9e-09  Score=90.08  Aligned_cols=66  Identities=8%  Similarity=0.013  Sum_probs=48.9

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH-----hCCC--------------HHHHHH-hhCchhHHhhHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF-----AKQT--------------IDSWML-AEGSDSVVNGECD  247 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~-----agkS--------------I~eIFa-eeGE~~FRelEs~  247 (261)
                      .|+|+|+|||||||+|+.||+.+||.++|.|++++..     +++.              +.++++ .-+++.|++.+.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~   82 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLIF   82 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHHH
Confidence            5899999999999999999999999999999986321     1111              112222 3577889998888


Q ss_pred             HHHHHhc
Q 024881          248 VLESLIM  254 (261)
Q Consensus       248 VLeels~  254 (261)
                      .+ ++..
T Consensus        83 ~i-~~~~   88 (253)
T 2ze6_A           83 EV-DWRK   88 (253)
T ss_dssp             HH-HTTT
T ss_pred             HH-HHHh
Confidence            88 6543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.62  E-value=8.4e-09  Score=102.15  Aligned_cols=105  Identities=12%  Similarity=0.123  Sum_probs=56.6

Q ss_pred             ccccCCCCCCceeeEEecCeEEEEEEecCCCCCCcccccchhHHHHHHHhhc-------CCceEEEEecCCCchhHHHHH
Q 024881          133 NQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLL-------KGTSIFLVGDSTEVNEKVALE  205 (261)
Q Consensus       133 g~L~~kIk~~Et~W~IdD~~lvv~L~K~d~~m~Wp~~~e~We~l~~g~~~lL-------kG~sIyLVGmmGsGKSTVGr~  205 (261)
                      |.||.+++.+.-+       ..=++.+..+ ..|..    + .++..-.+.+       +|+.|+|+|+|||||||+|+.
T Consensus         5 ~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~----~-~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~   71 (630)
T 1x6v_B            5 GSLCKKVKLSNNA-------QNWGMQRATN-VTYQA----H-HVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMA   71 (630)
T ss_dssp             ------------------------------------------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHH
T ss_pred             cchhheEEecCcc-------cccccccccc-ccccc----c-CCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHH
Confidence            6788888766543       1112334344 67722    1 2333333333       567899999999999999999


Q ss_pred             HHHhc---CCCccCcHHHHHHHhCCCHHHHHH-hhCchhHHhhHHHHHHHH
Q 024881          206 LAVGL---GYTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESL  252 (261)
Q Consensus       206 LA~~L---gY~fvDTDeLIEq~agkSI~eIFa-eeGE~~FRelEs~VLeel  252 (261)
                      ||++|   |+.++++|..+.+ .+..++++|. +++++.||++.. +...+
T Consensus        72 La~~L~~~G~~~v~lDgD~iR-~~L~~~~~fs~~dree~~r~i~e-va~~~  120 (630)
T 1x6v_B           72 LEEYLVCHGIPCYTLDGDNIR-QGLNKNLGFSPEDREENVRRIAE-VAKLF  120 (630)
T ss_dssp             HHHHHHHTTCCEEEESHHHHT-TTTTTTCCSSHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHhcCCeEEEechHHhh-hccCccccCChhhhHHHHHHHHH-HHHHH
Confidence            99999   9999888765554 3566666777 789999999843 44443

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.62  E-value=2.4e-08  Score=84.86  Aligned_cols=51  Identities=20%  Similarity=0.195  Sum_probs=44.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLA  235 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFae  235 (261)
                      +++.|.|.|++||||||+++.||+.+|+.++|+|+++.+.      .|+.+.++|.+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~   84 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE   84 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc
Confidence            7889999999999999999999999999999999999885      34455566544

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.57  E-value=5.9e-08  Score=84.70  Aligned_cols=38  Identities=24%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      ..|.|+|++||||||+|+.|| .+||.++|+|++..+..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~  113 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAY  113 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHh
Confidence            469999999999999999999 69999999999977654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.56  E-value=1e-08  Score=84.22  Aligned_cols=65  Identities=18%  Similarity=0.180  Sum_probs=50.2

Q ss_pred             HhhcCCceEEEEecCCCchhHHHHHHHHhcC------CCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHH
Q 024881          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECD  247 (261)
Q Consensus       181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg------Y~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~  247 (261)
                      ...-+|..|+|+|+|||||||+++.||+.|+      +.++|.|.+.+...+.-  .++.+++++.|++++..
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~--~~~~~~r~~~~~~~~~~   90 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDL--GFSEADRNENIRRIAEV   90 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTC--CSSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcccc--CCCHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999997      88999998865443211  23447778888887643

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.53  E-value=7.6e-08  Score=84.62  Aligned_cols=79  Identities=10%  Similarity=0.075  Sum_probs=52.4

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc--CCCccCcHHHHHHHhCCCHHHHHHhhC-------chhHHh
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFAKQTIDSWMLAEG-------SDSVVN  243 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L--gY~fvDTDeLIEq~agkSI~eIFaeeG-------E~~FRe  243 (261)
                      |..+..+....-+|.-|+|+|+|||||||+++.|++.+  ++.+||.|.+-+...+  ..++.+..|       +..+++
T Consensus        20 ~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~--~~~~~~~~~~~a~~~~~~~~~~   97 (287)
T 1gvn_B           20 LEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPN--FDELVKLYEKDVVKHVTPYSNR   97 (287)
T ss_dssp             HHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTT--HHHHHHHHGGGCHHHHHHHHHH
T ss_pred             HHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchh--hHHHHHHccchhhhhhhHHHHH
Confidence            44444443344467789999999999999999999999  8999999988543322  112222222       245666


Q ss_pred             hHHHHHHHHh
Q 024881          244 GECDVLESLI  253 (261)
Q Consensus       244 lEs~VLeels  253 (261)
                      +..++++++.
T Consensus        98 ~~~~~v~~~l  107 (287)
T 1gvn_B           98 MTEAIISRLS  107 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666554

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.52  E-value=6.5e-09  Score=83.42  Aligned_cols=52  Identities=17%  Similarity=0.103  Sum_probs=40.0

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH----HHhCCCHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE----TFAKQTIDSWMLA  235 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE----q~agkSI~eIFae  235 (261)
                      -+|+.|+|+|++||||||+++.||+.||..+++++.+.|    ...|+.|.++|..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~   62 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQK   62 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhc
Confidence            368899999999999999999999999887777654433    2234456777754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.49  E-value=6.5e-08  Score=78.80  Aligned_cols=39  Identities=26%  Similarity=0.246  Sum_probs=35.2

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLE  222 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeLIE  222 (261)
                      -+|..|+|+|+|||||||+++.||..|   |+.  ++|.|++.+
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~   66 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH   66 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence            358889999999999999999999999   777  999998854

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.49  E-value=6.5e-08  Score=82.56  Aligned_cols=40  Identities=13%  Similarity=0.183  Sum_probs=36.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc-CCCccCcHHHHHHHhC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAK  226 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLIEq~ag  226 (261)
                      ..|+|+|++||||||+++.||+++ ||.++|+|.+.+...+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~   43 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA   43 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhcc
Confidence            469999999999999999999985 9999999988887765

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.48  E-value=9.5e-08  Score=83.99  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=57.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      +.+-|.|++||||||+++.||+.+|+.++++++++.+.      .|+.|.+++. .|+....++..++|++-.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l   80 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERL   80 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHH
Confidence            46889999999999999999999999999999999874      5667888866 599899999888876644

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.47  E-value=1.3e-07  Score=79.30  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq  223 (261)
                      ++..|.|+|++||||||+++.||+.||+..+|+++++..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~   64 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE   64 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence            477899999999999999999999999999999888765

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.45  E-value=3.7e-08  Score=78.75  Aligned_cols=40  Identities=25%  Similarity=0.152  Sum_probs=34.4

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLET  223 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIEq  223 (261)
                      .+|..|+|+|+|||||||+++.||+.|+     +.++|.|.+.+.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~   55 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT   55 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTT
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHH
Confidence            4688999999999999999999999986     357899987543

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.44  E-value=7.8e-08  Score=76.55  Aligned_cols=49  Identities=16%  Similarity=-0.012  Sum_probs=38.2

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCC--ccCcHHHHHHHhCCCHHHHHHhh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLETFAKQTIDSWMLAE  236 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDTDeLIEq~agkSI~eIFaee  236 (261)
                      ++|+.|+|.|++||||||+++.||+.||+.  ++++++-    .|..|.+++.+.
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~----~~~~i~~~~~~~   52 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWN----SSDWIHDIIKEA   52 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETT----CCCHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCC----cHHHHHHHHhcc
Confidence            578899999999999999999999999985  5554332    455666766654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.43  E-value=1.2e-07  Score=75.10  Aligned_cols=30  Identities=20%  Similarity=0.356  Sum_probs=27.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      +.|+|+|++||||||+++.||+.||+.+++
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~   30 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence            369999999999999999999999998876

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.42  E-value=3.3e-08  Score=80.80  Aligned_cols=44  Identities=7%  Similarity=0.139  Sum_probs=38.1

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc-----------------------CCCccCcHHHHHHHhC
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFAK  226 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L-----------------------gY~fvDTDeLIEq~ag  226 (261)
                      +-+|..|+|+|+|||||||+++.|++.+                       +|.|+|.|++.+...+
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~   75 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKE   75 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHc
Confidence            4578899999999999999999999998                       5778999988776554

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.42  E-value=1.1e-07  Score=92.24  Aligned_cols=41  Identities=24%  Similarity=0.197  Sum_probs=36.8

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcC------CCccCcHHHHHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKELLET  223 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg------Y~fvDTDeLIEq  223 (261)
                      .-+|..|+|+|+|||||||+++.||..|+      +.++|.|.+++.
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~  412 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH  412 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh
Confidence            34899999999999999999999999995      567999999875

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.40  E-value=1.3e-07  Score=91.43  Aligned_cols=46  Identities=15%  Similarity=0.071  Sum_probs=39.0

Q ss_pred             hHHHHHHHhhc-----CCceEEEEecCCCchhHHHHHHHHhcCC-------CccCcHH
Q 024881          174 ESLTAGSMQLL-----KGTSIFLVGDSTEVNEKVALELAVGLGY-------TPLSTKE  219 (261)
Q Consensus       174 e~l~~g~~~lL-----kG~sIyLVGmmGsGKSTVGr~LA~~LgY-------~fvDTDe  219 (261)
                      +.|.+-+.+..     +|.+|+|+|+|||||||||+.||++||+       .|+|.|.
T Consensus       378 peV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          378 PEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             HHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             hhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            34455555555     7889999999999999999999999997       6999998

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.37  E-value=1.9e-07  Score=85.96  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL  220 (261)
                      +.-|+|+|+|||||||+++.||+.+||.++|+|++
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~  292 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL  292 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence            45599999999999999999999999999999986

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.35  E-value=1.4e-07  Score=82.47  Aligned_cols=41  Identities=20%  Similarity=0.153  Sum_probs=37.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      ++..|.|+|++||||||+++.||+.|||.++|+|.+....+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~   48 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT   48 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence            56789999999999999999999999999999999987765

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.33  E-value=1.8e-07  Score=74.75  Aligned_cols=40  Identities=10%  Similarity=0.051  Sum_probs=35.0

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCC-CccCcHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGY-TPLSTKELLETFA  225 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY-~fvDTDeLIEq~a  225 (261)
                      |..+.|+|+|||||||+++.||..++. .++|.|++.+...
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~   42 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVV   42 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhc
Confidence            567899999999999999999999976 8999999876543

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.30  E-value=4e-07  Score=88.32  Aligned_cols=62  Identities=16%  Similarity=0.131  Sum_probs=46.8

Q ss_pred             HHHHHHHhhc-----CCceEEEEecCCCchhHHHHHHHHhcC----CC--ccCcHHHHHHHhCCCHHHHHHhhCchhHHh
Q 024881          175 SLTAGSMQLL-----KGTSIFLVGDSTEVNEKVALELAVGLG----YT--PLSTKELLETFAKQTIDSWMLAEGSDSVVN  243 (261)
Q Consensus       175 ~l~~g~~~lL-----kG~sIyLVGmmGsGKSTVGr~LA~~Lg----Y~--fvDTDeLIEq~agkSI~eIFaeeGE~~FRe  243 (261)
                      .|.+-..+.+     +|..|+|+|+|||||||+|+.||++|+    +.  ++|.|.+-..           -.|+..|++
T Consensus       380 eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~-----------l~~~~~f~~  448 (573)
T 1m8p_A          380 EVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE-----------LSSELGFTR  448 (573)
T ss_dssp             HHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH-----------TCTTCCCSH
T ss_pred             cccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH-----------hccccCCCh
Confidence            3778888777     578899999999999999999999997    44  5666654331           145667777


Q ss_pred             hHHH
Q 024881          244 GECD  247 (261)
Q Consensus       244 lEs~  247 (261)
                      .|..
T Consensus       449 ~er~  452 (573)
T 1m8p_A          449 EDRH  452 (573)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            6664

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.13  E-value=1.1e-06  Score=84.80  Aligned_cols=62  Identities=15%  Similarity=0.071  Sum_probs=47.7

Q ss_pred             HHHHHHHhhc-----CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHHHHHhCCCHHHHHHhhCchhHHhh
Q 024881          175 SLTAGSMQLL-----KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNG  244 (261)
Q Consensus       175 ~l~~g~~~lL-----kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLIEq~agkSI~eIFaeeGE~~FRel  244 (261)
                      .|.+-+.+..     +|..|+|+|++||||||+|+.||+.|+     +.++|.|.+-+..           .|+..|++.
T Consensus       356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l-----------~~~~~f~~~  424 (546)
T 2gks_A          356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL-----------SRGLGFSKE  424 (546)
T ss_dssp             HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT-----------CTTCCSSHH
T ss_pred             hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh-----------cccccccHH
Confidence            4666666666     467899999999999999999999998     4899999865443           255567666


Q ss_pred             HHH
Q 024881          245 ECD  247 (261)
Q Consensus       245 Es~  247 (261)
                      |..
T Consensus       425 er~  427 (546)
T 2gks_A          425 DRI  427 (546)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.11  E-value=4.6e-07  Score=73.50  Aligned_cols=40  Identities=18%  Similarity=0.138  Sum_probs=35.8

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc-CCCccCcHHHHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLE  222 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvDTDeLIE  222 (261)
                      .-+|..|.|+|.+||||||+++.||+.+ |+.++|.|.++.
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~   58 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK   58 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence            3346779999999999999999999999 999999998874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.10  E-value=1.8e-06  Score=73.22  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=35.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~  224 (261)
                      |.|+|.|++||||+|.++.||+.+|+..++|.+++.+.
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~   38 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREA   38 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHH
Confidence            57999999999999999999999999999999999653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.05  E-value=3.3e-06  Score=72.85  Aligned_cols=43  Identities=23%  Similarity=0.325  Sum_probs=37.7

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      +-+..-|+|+|++||||+|.++.||+.+|+..++|.+++.+..
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i   68 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEV   68 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHH
Confidence            3455568999999999999999999999999999999997643

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.05  E-value=4.9e-07  Score=83.58  Aligned_cols=70  Identities=11%  Similarity=0.052  Sum_probs=56.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH--------------HHHHhCCC-----HHHHHHhhCchhHHhhHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGECD  247 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL--------------IEq~agkS-----I~eIFaeeGE~~FRelEs~  247 (261)
                      ..|.|+|++||||||+++.||+.||..+++.|.+              .|+..|..     +.+..+.-+...|++.+.+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~   87 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK   87 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence            3699999999999999999999999999998887              45555544     5555567788899999999


Q ss_pred             HHHHHhccc
Q 024881          248 VLESLIMFE  256 (261)
Q Consensus       248 VLeels~~~  256 (261)
                      .++++....
T Consensus        88 ~i~~i~~~g   96 (340)
T 3d3q_A           88 YIKDITRRG   96 (340)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhCC
Confidence            988876433

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.90  E-value=3.6e-06  Score=80.23  Aligned_cols=70  Identities=16%  Similarity=0.218  Sum_probs=44.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcH--HHHH-HHhCCCHHHHHHhhCchh----------------HHhh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLE-TFAKQTIDSWMLAEGSDS----------------VVNG  244 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD--eLIE-q~agkSI~eIFaeeGE~~----------------FRel  244 (261)
                      +.+.+|.|+|++|+|||++++.||+.||++|++.|  .+.+ .+.|..+.+++.+.++.+                .+..
T Consensus        48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~  127 (444)
T 1g41_A           48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA  127 (444)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhH
Confidence            34578999999999999999999999999998766  4666 477877777776655554                4455


Q ss_pred             HHHHHHHHh
Q 024881          245 ECDVLESLI  253 (261)
Q Consensus       245 Es~VLeels  253 (261)
                      |.+|+.+|.
T Consensus       128 e~rvl~~LL  136 (444)
T 1g41_A          128 EERILDALL  136 (444)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            666666665

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.82  E-value=1.4e-05  Score=70.04  Aligned_cols=30  Identities=17%  Similarity=0.097  Sum_probs=26.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      -|-|.|++|||||||++.|++.+|++.+.-
T Consensus         3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~   32 (241)
T 1dek_A            3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQL   32 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEEECCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCeEEec
Confidence            478999999999999999999998877763

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.81  E-value=7.3e-06  Score=66.23  Aligned_cols=47  Identities=19%  Similarity=0.222  Sum_probs=37.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcC--CCccCcHHHHHHHhCCCHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETFAKQTID  230 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDTDeLIEq~agkSI~  230 (261)
                      -+|..|.|+|.+||||||+++.||..++  +.+++.|..+-.....++.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~   52 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLE   52 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHH
Confidence            4677899999999999999999999999  8899988765433444443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.70  E-value=3e-05  Score=63.87  Aligned_cols=41  Identities=20%  Similarity=0.115  Sum_probs=34.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc-----------------------CCCccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L-----------------------gY~fvDTDeLIEq~a  225 (261)
                      +|.-|.|+|++|+||||+.+.|+..+                       +|.|+|.+++-+...
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~   70 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIK   70 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHh
Confidence            58889999999999999999999987                       478888887776543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.67  E-value=2.1e-05  Score=62.53  Aligned_cols=29  Identities=24%  Similarity=0.094  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +..+|..|.|+|++||||||+++.|+..+
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45679999999999999999999999987

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.65  E-value=4.5e-05  Score=61.29  Aligned_cols=27  Identities=11%  Similarity=0.087  Sum_probs=25.0

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++|.-+.|+|++|+||||+.+.|+..+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            578889999999999999999999865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.62  E-value=7.6e-05  Score=64.91  Aligned_cols=51  Identities=12%  Similarity=0.094  Sum_probs=41.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCCC---HHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQT---IDSWMLA  235 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agkS---I~eIFae  235 (261)
                      .+..|.|.|++|+|||++++.||..++.+|+  +..+++.+..|.+   +.++|..
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~  103 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK  103 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHH
Confidence            4677999999999999999999999998875  6668888777765   4555543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.60  E-value=2.2e-05  Score=65.66  Aligned_cols=32  Identities=13%  Similarity=0.102  Sum_probs=28.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      ..+|.|+|++|+|||++++.||..++.+++..
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            44699999999999999999999999877654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.53  E-value=5.7e-05  Score=59.88  Aligned_cols=41  Identities=20%  Similarity=0.305  Sum_probs=35.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc----CC--CccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL----GY--TPLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L----gY--~fvDTDeLIEq~a  225 (261)
                      +|..++|+|++|+||||+++.+|..+    |+  .+++.+++++...
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~   83 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK   83 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence            58899999999999999999999887    65  4678888887653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.52  E-value=3.8e-05  Score=65.08  Aligned_cols=55  Identities=9%  Similarity=-0.007  Sum_probs=39.5

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc-CCCccC--cHHHH---------H-----HHhCCCHHHHHHhhCc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL-GYTPLS--TKELL---------E-----TFAKQTIDSWMLAEGS  238 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvD--TDeLI---------E-----q~agkSI~eIFaeeGE  238 (261)
                      -+|+-|+|.|.+||||||+++.||+.| |+.++.  .|..+         +     .-.|..+.++|..+++
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~   93 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPE   93 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------CCCCHHHHHHHCHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEecchhhhhccccccccccccccccccCCchHHHHHhCch
Confidence            467889999999999999999999999 777663  33221         1     2246668888876543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.45  E-value=8.2e-05  Score=65.86  Aligned_cols=34  Identities=21%  Similarity=0.140  Sum_probs=31.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      .+.+|.|+|++|+|||++++.||+.+|++|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~   83 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD   83 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence            5678999999999999999999999999998764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.38  E-value=3e-05  Score=68.45  Aligned_cols=37  Identities=14%  Similarity=0.067  Sum_probs=29.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC-----CCccCcHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-----Y~fvDTDeLI  221 (261)
                      ++.-|-|.|.+|||||||++.||+.||     +..+|+|++-
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            345699999999999999999999998     7889999864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.37  E-value=9.9e-05  Score=62.05  Aligned_cols=39  Identities=21%  Similarity=0.178  Sum_probs=31.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcCCC----------ccCcHHH
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKEL  220 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~----------fvDTDeL  220 (261)
                      ++-+|.-|-|+|.+||||||+++.||..||+.          +++.|.+
T Consensus        21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~   69 (245)
T 2jeo_A           21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF   69 (245)
T ss_dssp             --CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence            34467779999999999999999999999976          5677753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.35  E-value=0.00019  Score=60.85  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=28.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      +.+|+|.|++|+|||++++.+|..++.+|+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~   84 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSATFLN   84 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            6789999999999999999999999987753

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.32  E-value=0.00015  Score=64.37  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      .+.+|+|+|++|+|||++++.||+.+|++|+..+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~  104 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  104 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            3568999999999999999999999999887654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.29  E-value=3.2e-05  Score=65.72  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=30.7

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcC--CCccCcH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTK  218 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDTD  218 (261)
                      .-+|.-|.|.|.+||||||+++.||+.|+  +..+.+.
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~   60 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR   60 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec
Confidence            34788999999999999999999999996  6666553

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.29  E-value=0.00014  Score=60.64  Aligned_cols=29  Identities=7%  Similarity=0.019  Sum_probs=26.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc-CCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL-GYT  213 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L-gY~  213 (261)
                      +|+.|.+.|.+||||||+++.||+.| |+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~   30 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence            57789999999999999999999999 654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.28  E-value=0.00012  Score=61.22  Aligned_cols=32  Identities=19%  Similarity=0.108  Sum_probs=28.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      +.+|+|.|++|+|||++++.||+.++.+|+..
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            44699999999999999999999999887654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.26  E-value=0.00017  Score=59.57  Aligned_cols=29  Identities=21%  Similarity=0.008  Sum_probs=19.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHH-Hhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELA-VGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA-~~L  210 (261)
                      ..-+|.-|.|+|.+||||||+.+.|+ ..+
T Consensus        23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            34568889999999999999999999 554

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.25  E-value=0.00027  Score=60.32  Aligned_cols=72  Identities=15%  Similarity=0.193  Sum_probs=50.2

Q ss_pred             HhhcCCceEEEEecCCCchhHHHHHHHHhc-----------------------CCCccCcHHHHHHHhC-----------
Q 024881          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFAK-----------  226 (261)
Q Consensus       181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L-----------------------gY~fvDTDeLIEq~ag-----------  226 (261)
                      +..++|.-|.|+|++|+||||+.+.|++.+                       .|.|+|.+++-+....           
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~   93 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQG   93 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhc
Confidence            456789999999999999999999999775                       3678888887666542           


Q ss_pred             -------CCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          227 -------QTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       227 -------kSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                             .+|.++ .+.|...+-+++-+.+.++-
T Consensus        94 n~YGt~~~~v~~~-l~~G~~vildid~qg~~~~~  126 (197)
T 3ney_A           94 NMFGTKFETVHQI-HKQNKIAILDIEPQTLKIVR  126 (197)
T ss_dssp             EEEEEEHHHHHHH-HHTTCEEEEECCGGGHHHHC
T ss_pred             eecccchhhHHHH-HhcCCeEEEEECHHHHHHHH
Confidence                   124444 33566666666666555553

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.25  E-value=0.00027  Score=55.05  Aligned_cols=45  Identities=16%  Similarity=-0.076  Sum_probs=35.2

Q ss_pred             cchhHHHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhc---CCCcc
Q 024881          171 ESWESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL  215 (261)
Q Consensus       171 e~We~l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv  215 (261)
                      ++|..+.+.+.... .+.+|+|.|.+|+|||++++.++...   +++|+
T Consensus         8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v   56 (145)
T 3n70_A            8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV   56 (145)
T ss_dssp             HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence            34666666665544 55689999999999999999999987   66664

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.23  E-value=0.00028  Score=59.30  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=29.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      .+.+|+|.|++|+|||++++.+|..+|.+++.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            56789999999999999999999999998865

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.23  E-value=0.00042  Score=60.59  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=42.3

Q ss_pred             CCCCcccccchhHHHHHHHhhc---------------CCceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHH
Q 024881          163 ELKWPDIVESWESLTAGSMQLL---------------KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETF  224 (261)
Q Consensus       163 ~m~Wp~~~e~We~l~~g~~~lL---------------kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~  224 (261)
                      .+.|.||.-. +.+.+.+.+.+               .+.+|+|.|++|+|||++++.+|+.+|.+|+.  ..+++.+.
T Consensus        14 ~~~~~di~G~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~   91 (322)
T 3eie_A           14 NVKWEDVAGL-EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW   91 (322)
T ss_dssp             CCCGGGSCSC-HHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTT
T ss_pred             CCCHHHhcCh-HHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcc
Confidence            3788877542 22333344333               23579999999999999999999999988864  44454433

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.22  E-value=0.0002  Score=57.01  Aligned_cols=27  Identities=15%  Similarity=0.100  Sum_probs=24.4

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-|.|+|++||||||+.+.|+..+
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            378889999999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.20  E-value=0.00028  Score=53.49  Aligned_cols=25  Identities=16%  Similarity=0.201  Sum_probs=23.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.+++|+|++|+|||++++.+|+.+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999997

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.19  E-value=0.00025  Score=59.36  Aligned_cols=32  Identities=16%  Similarity=0.172  Sum_probs=28.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      -.+.+++|+|++|+|||++++.+|+.++.+++
T Consensus        48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            34678999999999999999999999998775

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.16  E-value=0.00022  Score=58.67  Aligned_cols=31  Identities=16%  Similarity=0.078  Sum_probs=27.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      +.+|+|+|++|+|||++++.+|+.+|.+++.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~   69 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLA   69 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4569999999999999999999999988763

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.14  E-value=0.00032  Score=62.93  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=40.2

Q ss_pred             CCCcccccchhHHHHHHHhhc---------------CCceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          164 LKWPDIVESWESLTAGSMQLL---------------KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       164 m~Wp~~~e~We~l~~g~~~lL---------------kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      +.|.||+-. +.+.+-+.+.+               .+.+|+|.|.+|+|||++++.+|.++|++|+..
T Consensus       112 ~~~~~iiG~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          112 VKFDDIAGQ-DLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CCGGGSCSC-HHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CChHHhCCH-HHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            677776542 33444444444               357899999999999999999999999998743

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.14  E-value=0.0003  Score=57.72  Aligned_cols=26  Identities=15%  Similarity=0.075  Sum_probs=22.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|..+.|||++|+||||+.+.|+..+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            57889999999999999999999743

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.12  E-value=0.00064  Score=54.43  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=33.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc---CCCc--cCcHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTKELLETFA  225 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTDeLIEq~a  225 (261)
                      .+|+|.|++|+|||++++.+|..+   |+++  ++..+++++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK   98 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence            789999999999999999999988   6655  68887776653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.11  E-value=0.00029  Score=53.85  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=23.5

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.+|+|+|++|+|||++++.+|+.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999999998

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=97.10  E-value=0.0059  Score=45.66  Aligned_cols=77  Identities=19%  Similarity=0.177  Sum_probs=63.0

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC-----------------cceeeeecccccCCCCC
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG-----------------SFITLIETNQLFDKIKP  141 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~-----------------~~~tlId~g~L~~kIk~  141 (261)
                      +.+.+.++...+.|++.||+   .+..||.|.++++.|.|.-+...                 .+..-|   .|.+.|.+
T Consensus         5 P~~di~e~~~~~~v~~~lPG---~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~---~LP~~vd~   78 (100)
T 3gla_A            5 PRVDIKEEVNHFVLYADLPG---IDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRF---ALPDSADA   78 (100)
T ss_dssp             CCEEEEECSSEEEEEEECTT---SCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEE---ECCTTBCT
T ss_pred             CcEEEEECCCEEEEEEECCC---CCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEE---ECCCCcCh
Confidence            46788899999999999998   56789999999999999875432                 232223   38888999


Q ss_pred             CceeeEEecCeEEEEEEecC
Q 024881          142 TETIWYIDEDQLVINLKKQD  161 (261)
Q Consensus       142 ~Et~W~IdD~~lvv~L~K~d  161 (261)
                      +.-...++|..|.|.|.|..
T Consensus        79 ~~i~A~~~~GvL~I~~pK~~   98 (100)
T 3gla_A           79 DGITAAGRNGVLEIRIPKRP   98 (100)
T ss_dssp             TSCEEEEETTEEEEEEEBC-
T ss_pred             HHeEEEEeCCEEEEEEecCC
Confidence            99889999999999999975

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=97.09  E-value=0.0049  Score=46.79  Aligned_cols=79  Identities=20%  Similarity=0.398  Sum_probs=65.1

Q ss_pred             CCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccC------------CcceeeeecccccCCCCCCcee
Q 024881           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS------------GSFITLIETNQLFDKIKPTETI  145 (261)
Q Consensus        78 t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~------------~~~~tlId~g~L~~kIk~~Et~  145 (261)
                      .+.+.+.++..++.|++.||+   .+-.||.|.++++.|.|.-+..            +.+..-|   .|.+.|.++.-.
T Consensus         6 ~P~~di~e~~~~~~v~~~lPG---~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~---~LP~~vd~~~i~   79 (102)
T 4fei_A            6 TPAADWRDAGTHLDLLLDVPG---VDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVREL---AFPEPVRPASGV   79 (102)
T ss_dssp             CCCEEEEEETTEEEEEEECTT---CCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEE---ECSSCBCTTCCE
T ss_pred             cCcEEEEEcCCEEEEEEECCC---CchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEE---ECCCCcchhHcE
Confidence            346788889999999999998   6778999999999999976542            2343333   388899999888


Q ss_pred             eEEecCeEEEEEEecCC
Q 024881          146 WYIDEDQLVINLKKQDP  162 (261)
Q Consensus       146 W~IdD~~lvv~L~K~d~  162 (261)
                      ..++|..|.|.|.|..+
T Consensus        80 A~~~~GvL~I~lpK~~~   96 (102)
T 4fei_A           80 ASLAGGVLTVRFEKLRP   96 (102)
T ss_dssp             EEEETTEEEEEEEBSSC
T ss_pred             EEEECCEEEEEEEccCc
Confidence            99999999999999876

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.08  E-value=0.00034  Score=60.99  Aligned_cols=31  Identities=10%  Similarity=0.044  Sum_probs=27.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      ..|+|.|++|+|||++++.+|+.+|++|+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v   67 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRKMGINPIMM   67 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            3588889999999999999999999998754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.07  E-value=0.0003  Score=56.17  Aligned_cols=44  Identities=11%  Similarity=0.139  Sum_probs=33.3

Q ss_pred             HHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc---CC--CccCcHHH
Q 024881          176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKEL  220 (261)
Q Consensus       176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L---gY--~fvDTDeL  220 (261)
                      +...+.+. +|..++|+|.+|+||||+++.+|..+   |+  .+++..++
T Consensus        27 ~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~   75 (149)
T 2kjq_A           27 LVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM   75 (149)
T ss_dssp             HHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred             HHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence            44444444 89999999999999999999999988   73  34454433

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.06  E-value=0.00028  Score=59.50  Aligned_cols=32  Identities=16%  Similarity=0.178  Sum_probs=28.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      ..+++|+|++|+|||++++.+|+.+|++|+..
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            45799999999999999999999999997643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.04  E-value=0.0007  Score=53.95  Aligned_cols=46  Identities=9%  Similarity=-0.047  Sum_probs=33.7

Q ss_pred             HHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhcC---C--CccCcHHHH
Q 024881          176 LTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGLG---Y--TPLSTKELL  221 (261)
Q Consensus       176 l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~Lg---Y--~fvDTDeLI  221 (261)
                      +.+.+.+.+   .+.+++|+|++|+|||++++.+|+.++   +  .+++.+++.
T Consensus        39 ~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~   92 (242)
T 3bos_A           39 LIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA   92 (242)
T ss_dssp             HHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            444444443   578999999999999999999999876   3  355555543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.03  E-value=0.00059  Score=57.99  Aligned_cols=30  Identities=20%  Similarity=0.140  Sum_probs=27.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      +.+|+|.|+.|+|||++++.+|+.+|++|+
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            367999999999999999999999998875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.01  E-value=9.4e-05  Score=62.70  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC---------CCccCcHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKELLETF  224 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg---------Y~fvDTDeLIEq~  224 (261)
                      .+.+|+|+|++|+|||++++.+|+.++         +..++..+++.+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~  114 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQY  114 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhc
Confidence            345799999999999999999999983         3445655554433

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.00  E-value=0.00055  Score=61.15  Aligned_cols=31  Identities=23%  Similarity=0.177  Sum_probs=28.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      +.+|+|+|++|+|||++++.+|+.+|+.|+.
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            5689999999999999999999999998863

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.97  E-value=0.00049  Score=59.47  Aligned_cols=34  Identities=18%  Similarity=0.095  Sum_probs=29.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      .+..|.+++|+|++|+|||++++.||+.+|..++
T Consensus        42 ~l~~~~~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           42 GICTGGHILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             HHHHTCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHcCCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            3445789999999999999999999999997764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.96  E-value=0.00067  Score=54.31  Aligned_cols=36  Identities=14%  Similarity=-0.000  Sum_probs=28.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLI  221 (261)
                      =+|.-+.|+|.+||||||+.+.+.  .|+..++.|.+.
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~   42 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR   42 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH
Confidence            367789999999999999999865  466667776654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.92  E-value=0.00055  Score=60.24  Aligned_cols=35  Identities=17%  Similarity=0.045  Sum_probs=29.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC-------CCccCcHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKE  219 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg-------Y~fvDTDe  219 (261)
                      +|.-|.|+|.+||||||+++.|+..++       ..++|.|.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~  120 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence            567799999999999999999999887       44555554

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.89  E-value=0.00054  Score=56.04  Aligned_cols=27  Identities=19%  Similarity=0.175  Sum_probs=24.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +|..|.|+|.+||||||+++.|+..+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            577899999999999999999999874

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.88  E-value=0.00057  Score=58.95  Aligned_cols=59  Identities=10%  Similarity=0.019  Sum_probs=39.3

Q ss_pred             EecCCCCCCcccccc---hhHHHHHHHhhc----CCceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          158 KKQDPELKWPDIVES---WESLTAGSMQLL----KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~---We~l~~g~~~lL----kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      +|..+ ..|.||+-.   .+.+...+....    ...+|+|.|++|+|||++++.+|+.+|.+|+..
T Consensus        21 ~~~~p-~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           21 TSLRP-SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             --CCC-CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             hccCC-CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            45666 567766532   222333333221    124799999999999999999999999987654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.85  E-value=0.00058  Score=55.74  Aligned_cols=36  Identities=17%  Similarity=0.089  Sum_probs=28.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CCCcc--CcHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL--STKEL  220 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv--DTDeL  220 (261)
                      +|.-|.|+|.+||||||+++.|+..|   |+..+  +.|..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            46779999999999999999999986   65543  44643

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.79  E-value=0.00032  Score=56.18  Aligned_cols=24  Identities=13%  Similarity=0.075  Sum_probs=22.3

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      -|.|+|.+||||||+++.|++.|+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999984

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.77  E-value=0.00046  Score=63.93  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=31.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL  220 (261)
                      ++.-|+++|++|+||||++..||+++|..+++.|.+
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            455689999999999999999999999877777765

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.75  E-value=0.0011  Score=56.51  Aligned_cols=32  Identities=16%  Similarity=0.155  Sum_probs=27.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc------CCCccCc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL------GYTPLST  217 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L------gY~fvDT  217 (261)
                      |.+++|+|++|+||||+++.+|+.+      ++.++-.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i   82 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI   82 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            6689999999999999999999988      7665543

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.73  E-value=0.00098  Score=62.63  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=28.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      ..++|.|++|+|||++++.+|+.+|+.++..
T Consensus        78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            5799999999999999999999999988743

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.72  E-value=0.00066  Score=59.03  Aligned_cols=28  Identities=21%  Similarity=0.195  Sum_probs=25.7

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      +.|+|++|+||||+++.||..++..++.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~   74 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFIS   74 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999999876653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.70  E-value=0.00058  Score=53.17  Aligned_cols=52  Identities=15%  Similarity=0.173  Sum_probs=38.4

Q ss_pred             ccchhHHHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhcC-CCccCcHHHH
Q 024881          170 VESWESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLG-YTPLSTKELL  221 (261)
Q Consensus       170 ~e~We~l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~Lg-Y~fvDTDeLI  221 (261)
                      -+.|..+.+-+.... .+.+|+|.|.+|+|||++++.++...+ +.++|..++.
T Consensus        10 s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~   63 (143)
T 3co5_A           10 SAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYL   63 (143)
T ss_dssp             CHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHH
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCC
Confidence            345666766666544 456899999999999999999999887 4445654443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.69  E-value=0.00085  Score=55.86  Aligned_cols=29  Identities=17%  Similarity=0.158  Sum_probs=25.8

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      .++|+|.+|+||||+++.||..++.+++.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~   79 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARVPFIT   79 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            48999999999999999999998766654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.67  E-value=0.0014  Score=51.10  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=23.4

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      .++|+|+.|+|||++++.+|+.++.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            6999999999999999999999865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.65  E-value=0.001  Score=56.19  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             cchhHHHHHHHhhcCC--------ceEEEEecCCCchhHHHHHHHHhc
Q 024881          171 ESWESLTAGSMQLLKG--------TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       171 e~We~l~~g~~~lLkG--------~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.++.+...+.....|        .++.|+|.+|+|||++++.||+.+
T Consensus        24 ~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           24 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             HHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence            3455555555554433        479999999999999999999998

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.63  E-value=0.0012  Score=53.91  Aligned_cols=30  Identities=20%  Similarity=0.141  Sum_probs=24.1

Q ss_pred             HhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ...-+|.-+.|+|.+||||||+.+.|+..+
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            466778889999999999999999999765

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.62  E-value=0.001  Score=57.46  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc---CCCc--cCcHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTKELLE  222 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTDeLIE  222 (261)
                      +.+++|.|++|+|||++++.+|..+   |+.+  ++.+++.+
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~   78 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   78 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence            4689999999999999999999988   7665  55555543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.58  E-value=0.0013  Score=58.15  Aligned_cols=28  Identities=18%  Similarity=0.132  Sum_probs=25.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTP  214 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~f  214 (261)
                      .+++|+|++|+||||+++.+|..+|..+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            5799999999999999999999997654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.57  E-value=0.00059  Score=59.00  Aligned_cols=30  Identities=13%  Similarity=0.003  Sum_probs=23.1

Q ss_pred             HhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       181 ~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ..+.+|.-|.+.|..|+||||+++.|++.|
T Consensus        20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           20 GSMARGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             ---CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            344689999999999999999999999999

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.54  E-value=0.0017  Score=60.22  Aligned_cols=49  Identities=16%  Similarity=0.202  Sum_probs=32.2

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc-CCCc--cCcHHHHHHHhCC---CHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL-GYTP--LSTKELLETFAKQ---TIDSWML  234 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L-gY~f--vDTDeLIEq~agk---SI~eIFa  234 (261)
                      +.+|.|.|++|+|||++++.+|..+ |.+|  ++..+++....|.   .+.++|.
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~  221 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQ  221 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHH
Confidence            3679999999999999999999999 7776  4666776665443   3455553

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.54  E-value=0.0014  Score=56.14  Aligned_cols=26  Identities=23%  Similarity=0.135  Sum_probs=24.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+.+++|.|++|+|||++++.+|+.+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999999998

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.53  E-value=0.0014  Score=55.95  Aligned_cols=51  Identities=14%  Similarity=0.167  Sum_probs=33.7

Q ss_pred             ecCCCCCCcccccchhHHHHHHHhhc-CC--ceEEEEecCCCchhHHHHHHHHhcC
Q 024881          159 KQDPELKWPDIVESWESLTAGSMQLL-KG--TSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       159 K~d~~m~Wp~~~e~We~l~~g~~~lL-kG--~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      |..+ ..|.+|+-. +.+...+.+.+ .|  .+++|.|++|+|||++++.+|+.++
T Consensus        30 k~~p-~~~~~i~g~-~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           30 KYRP-KNLDEVTAQ-DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             HTCC-SSTTTCCSC-CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hcCC-CCHHHhhCC-HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4445 455555432 12233344333 33  4699999999999999999999975

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.52  E-value=0.0016  Score=53.01  Aligned_cols=27  Identities=19%  Similarity=0.291  Sum_probs=25.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|++|+||||+.|.||..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            578889999999999999999999988

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.51  E-value=0.00094  Score=55.72  Aligned_cols=30  Identities=3%  Similarity=-0.066  Sum_probs=25.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTP  214 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~f  214 (261)
                      -+|.-|.|+|.+||||||+.+.|+.. |...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v   47 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDI   47 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence            46888999999999999999999988 5433

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.50  E-value=0.0012  Score=59.25  Aligned_cols=38  Identities=21%  Similarity=0.234  Sum_probs=31.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLET  223 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq  223 (261)
                      +.+|+|.|++|+|||++++.+|..+|.+|+  +..+++.+
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~  123 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK  123 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence            346999999999999999999999998886  44455443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.50  E-value=0.0013  Score=55.83  Aligned_cols=30  Identities=17%  Similarity=0.160  Sum_probs=26.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      .|+|+|.+|+||||+++.||..++..++..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~  104 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEARVPFITA  104 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence            499999999999999999999987666543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.47  E-value=0.0014  Score=53.80  Aligned_cols=27  Identities=15%  Similarity=0.259  Sum_probs=24.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      +++.|+|.+|+||||+.+.||..++..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            368999999999999999999998743

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.46  E-value=0.0017  Score=56.28  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=25.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      |.+++|.|++|+|||++++.+|+.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            568999999999999999999999985

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.45  E-value=0.0023  Score=49.53  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+++|+|+.|+|||++++.+|+.+
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            369999999999999999999986

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.45  E-value=0.0041  Score=58.00  Aligned_cols=44  Identities=14%  Similarity=0.148  Sum_probs=33.5

Q ss_pred             HHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc----------CCCccCcHH
Q 024881          176 LTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE  219 (261)
Q Consensus       176 l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L----------gY~fvDTDe  219 (261)
                      .+.-+.+.|   ...|+.|+|.+|+|||++++.||+.+          |.+++..|-
T Consensus       188 ~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~  244 (468)
T 3pxg_A          188 EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (468)
T ss_dssp             HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             HHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence            344455554   45589999999999999999999998          777776654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.44  E-value=0.0023  Score=55.28  Aligned_cols=32  Identities=9%  Similarity=-0.053  Sum_probs=27.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc-----------CCCccCc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL-----------GYTPLST  217 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L-----------gY~fvDT  217 (261)
                      +.+++|.|++|+|||++++.+|+.+           ++.++-.
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i   87 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV   87 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence            4579999999999999999999988           7777643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.42  E-value=0.0017  Score=54.06  Aligned_cols=29  Identities=10%  Similarity=0.052  Sum_probs=24.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-+|.-+.|+|++|+||||+.+.|+..+
T Consensus        19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            44578889999999999999999999765

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=96.42  E-value=0.025  Score=44.05  Aligned_cols=78  Identities=12%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeC-CEEEEEEccCC-------------cceeeeecccccCCCCCCce
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADG-TCLTVRVNRSG-------------SFITLIETNQLFDKIKPTET  144 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~-~sL~V~vk~~~-------------~~~tlId~g~L~~kIk~~Et  144 (261)
                      +.|.+.++..++.|++.||+   .+..||.|.+++ +.|.|..+...             .+..-+   .|++.|.++.-
T Consensus        25 P~~di~e~~~~~~v~~~lPG---~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~---~LP~~vd~~~i   98 (123)
T 3aab_A           25 PPVDMYEEGGYLVVVADLAG---FNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVI---RLPYNVAKDAE   98 (123)
T ss_dssp             SCEEEEEETTEEEEEEECCS---CCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEE---ECSSEECTTCC
T ss_pred             CcEEEEEcCCEEEEEEECCC---CCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEE---ECCCCcCcchh
Confidence            56888899999999999998   567899999999 99999988653             232222   47788888887


Q ss_pred             -eeEEecCeEEEEEEecCC
Q 024881          145 -IWYIDEDQLVINLKKQDP  162 (261)
Q Consensus       145 -~W~IdD~~lvv~L~K~d~  162 (261)
                       .-..+|..|.|.+.|...
T Consensus        99 ~~A~~~~GvL~I~lPK~~~  117 (123)
T 3aab_A           99 ISGKYENGVLTIRIPIAGT  117 (123)
T ss_dssp             CEEEEETTEEEEEEEGGGE
T ss_pred             CeeEEcCCEEEEEEEcCCC
Confidence             777899999999999764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.41  E-value=0.0016  Score=57.56  Aligned_cols=29  Identities=21%  Similarity=0.169  Sum_probs=26.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc-CCCcc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPL  215 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L-gY~fv  215 (261)
                      ..|+|.|++|+|||++++.+|..+ +.+|+
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             ceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            679999999999999999999999 77664

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.38  E-value=0.0019  Score=54.81  Aligned_cols=35  Identities=23%  Similarity=0.105  Sum_probs=28.7

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc---CCCccCc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fvDT  217 (261)
                      .++|+-|.|.|..|+||||+++.|++.|   ||..+-+
T Consensus         3 ~m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~   40 (213)
T 4edh_A            3 AMTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT   40 (213)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence            4789999999999999999999999998   4555444

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=96.37  E-value=0.032  Score=45.49  Aligned_cols=76  Identities=22%  Similarity=0.310  Sum_probs=63.2

Q ss_pred             eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC------------------cceeeeecccccCCCCCC
Q 024881           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG------------------SFITLIETNQLFDKIKPT  142 (261)
Q Consensus        81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~------------------~~~tlId~g~L~~kIk~~  142 (261)
                      +.+.++..++.|++.||+   .+-.||.|+++++.|.|.-++..                  .+..-|   .|.+.|.++
T Consensus        59 vdi~e~~~~~~v~~dlPG---~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~---~LP~~vd~~  132 (161)
T 4eld_A           59 ISIIEGDQHIKVIAWLPG---VNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTI---KLPATVKEE  132 (161)
T ss_dssp             EEEEECSSEEEEEEECTT---CCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEE---ECSSCBCGG
T ss_pred             eeEEEeCCEEEEEEECCC---CChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEE---ECCCCcccc
Confidence            788889999999999998   57799999999999999876543                  222222   488899999


Q ss_pred             ceeeEEecCeEEEEEEecCC
Q 024881          143 ETIWYIDEDQLVINLKKQDP  162 (261)
Q Consensus       143 Et~W~IdD~~lvv~L~K~d~  162 (261)
                      .-.-.++|..|.|.|.|...
T Consensus       133 ~i~A~~~nGvL~I~lpK~~~  152 (161)
T 4eld_A          133 NASAKFENGVLSVILPKAES  152 (161)
T ss_dssp             GCEEEEETTEEEEEEEBCGG
T ss_pred             cEEEEEECCEEEEEEEcCCC
Confidence            88888999999999999765

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.35  E-value=0.0024  Score=56.46  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=34.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcC----CCc--cCcHHHHHHHhC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLG----YTP--LSTKELLETFAK  226 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~Lg----Y~f--vDTDeLIEq~ag  226 (261)
                      +.+|||.|.+|+|||++++.+|..+.    +++  +..++++++..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~  198 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKN  198 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHH
Confidence            68999999999999999999998654    654  688888887654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.34  E-value=0.0027  Score=54.62  Aligned_cols=28  Identities=11%  Similarity=-0.114  Sum_probs=25.1

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc----CCCcc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL----GYTPL  215 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L----gY~fv  215 (261)
                      +++|+|++|+||||+++.++..+    ++.++
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~   77 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFV   77 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEE
Confidence            89999999999999999999998    55554

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.33  E-value=0.0034  Score=52.57  Aligned_cols=40  Identities=15%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             chhHHHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          172 SWESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       172 ~We~l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ++..+.+-+.... .+.+|+|.|.+|+|||++++.+|+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           14 SFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             HHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            3555555554433 467899999999999999999999986

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.002  Score=58.71  Aligned_cols=38  Identities=5%  Similarity=0.115  Sum_probs=30.8

Q ss_pred             hhHHHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          173 WESLTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       173 We~l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++.+..-+...+   +|.+|||.|++|+|||++++.+++.|
T Consensus        29 ~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           29 FTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            445555555544   66789999999999999999999999

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.32  E-value=0.0016  Score=60.07  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=28.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcC--CCccC
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLS  216 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvD  216 (261)
                      ..+.++.|.|++|+|||++++.||+.+|  ++|+.
T Consensus        61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~   95 (456)
T 2c9o_A           61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCP   95 (456)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred             CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence            3457899999999999999999999999  66654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.30  E-value=0.0018  Score=56.08  Aligned_cols=30  Identities=17%  Similarity=-0.129  Sum_probs=26.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      .-+|.-|.+.|.+|+||||+++.|++.|+.
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            346888999999999999999999998654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.27  E-value=0.0011  Score=63.21  Aligned_cols=31  Identities=19%  Similarity=0.131  Sum_probs=28.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      ..|.|+|++|+|||++++.+|..+|.+|+..
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            4699999999999999999999999988754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.27  E-value=0.0023  Score=61.11  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      ..++|.++.|+|++|+||||+++.||..++.+++
T Consensus       104 ~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~  137 (543)
T 3m6a_A          104 KSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV  137 (543)
T ss_dssp             SSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            3447889999999999999999999999987764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.27  E-value=0.0026  Score=54.02  Aligned_cols=29  Identities=14%  Similarity=0.072  Sum_probs=24.8

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +-+|.-++|+|++|+||||+.+.|+..+-
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            45788899999999999999999998763

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.26  E-value=0.0027  Score=53.30  Aligned_cols=51  Identities=25%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             ecCCCCCCcccccchhHHHHHHHhhcC---CceEEEEecCCCchhHHHHHHHHhcC
Q 024881          159 KQDPELKWPDIVESWESLTAGSMQLLK---GTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       159 K~d~~m~Wp~~~e~We~l~~g~~~lLk---G~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      |..+ ..|.+++-. +.+..-+.+.++   ..++.|.|+.|+|||++++.+|+.++
T Consensus        18 k~~p-~~~~~~~g~-~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           18 KYRP-QRLDDIVGQ-EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             HTCC-CSTTTCCSC-HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             ccCC-CCHHHhhCC-HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            4455 556555522 223333333332   23799999999999999999999973

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=96.26  E-value=0.049  Score=44.30  Aligned_cols=79  Identities=16%  Similarity=0.323  Sum_probs=64.1

Q ss_pred             CCceEEcccCceEEEEEecCCcccccccceEEEe-eCCEEEEEEccCC-----------------cceeeeecccccCCC
Q 024881           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDA-DGTCLTVRVNRSG-----------------SFITLIETNQLFDKI  139 (261)
Q Consensus        78 t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~-~~~sL~V~vk~~~-----------------~~~tlId~g~L~~kI  139 (261)
                      .+.+.+.++..++.|++.||+   .+-.||.|++ +++.|.|.-+...                 .+..-|   .|.+.|
T Consensus        43 ~p~~di~e~~d~~~v~~dlPG---v~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~---~LP~~v  116 (151)
T 1gme_A           43 NARMDWKETPEAHVFKADLPG---VKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRF---RLLEDA  116 (151)
T ss_dssp             GGCEEEEECSSEEEEEEECTT---CCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEE---ECSSCC
T ss_pred             CCceEEEEcCCEEEEEEECCC---CChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEE---ECCCCc
Confidence            457899999999999999998   5678999999 5789999876542                 333223   378889


Q ss_pred             CCCceeeEEecCeEEEEEEecCC
Q 024881          140 KPTETIWYIDEDQLVINLKKQDP  162 (261)
Q Consensus       140 k~~Et~W~IdD~~lvv~L~K~d~  162 (261)
                      .++.-.=.++|..|.|.|.|...
T Consensus       117 d~~~i~A~~~nGvL~I~lPK~~~  139 (151)
T 1gme_A          117 KVEEVKAGLENGVLTVTVPKAEV  139 (151)
T ss_dssp             CGGGCEEEEETTEEEEEEECCCC
T ss_pred             cccceEEEEECCEEEEEEEccCc
Confidence            88887778899999999999876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.25  E-value=0.0016  Score=60.21  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=29.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      +.-|+|+|++|+||||++..||+++|..+++.|.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            3458999999999999999999999977777665

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.24  E-value=0.0031  Score=53.20  Aligned_cols=34  Identities=9%  Similarity=-0.055  Sum_probs=30.5

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      |..+.|.|+.|.|||++.+.+++.+|+.++|.+.
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            6789999999999999999999999988887654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.20  E-value=0.0039  Score=60.98  Aligned_cols=46  Identities=13%  Similarity=0.143  Sum_probs=35.6

Q ss_pred             hHHHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc----------CCCccCcHH
Q 024881          174 ESLTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE  219 (261)
Q Consensus       174 e~l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L----------gY~fvDTDe  219 (261)
                      +..+.-+.+.|   .+.|+.|+|++|+|||++++.||+.+          |..++..|-
T Consensus       186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~  244 (758)
T 3pxi_A          186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (758)
T ss_dssp             HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence            44445555554   45689999999999999999999998          888887765

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.16  E-value=0.0034  Score=53.89  Aligned_cols=28  Identities=18%  Similarity=0.082  Sum_probs=26.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      +|.-|.+.|..|+||||+++.|++.|+-
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            6889999999999999999999999985

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.15  E-value=0.0035  Score=54.77  Aligned_cols=50  Identities=12%  Similarity=0.241  Sum_probs=34.6

Q ss_pred             ecCCCCCCcccccchhHHHHHHHhhcC-Cc--eEEEEecCCCchhHHHHHHHHhc
Q 024881          159 KQDPELKWPDIVESWESLTAGSMQLLK-GT--SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       159 K~d~~m~Wp~~~e~We~l~~g~~~lLk-G~--sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |..+ ..|.++.-. +.+...+...++ |.  ++.|+|++|+||||+++.+|..|
T Consensus        18 k~rp-~~~~~~~g~-~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           18 KYRP-ETLDEVYGQ-NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             HTCC-SSGGGCCSC-HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HhCC-CcHHHhcCc-HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4455 556555422 345555555444 32  38999999999999999999987

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.13  E-value=0.0017  Score=61.75  Aligned_cols=70  Identities=11%  Similarity=0.201  Sum_probs=46.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHH-----HHHHh-CCCHH-------------HHHHhhCchhHHhhHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL-----LETFA-KQTID-------------SWMLAEGSDSVVNGECDV  248 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL-----IEq~a-gkSI~-------------eIFaeeGE~~FRelEs~V  248 (261)
                      -|+|+|++|+||||++..||++++..+++.|.+     +.-.| +-+..             +.-..-....|.+.-.+.
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~~   83 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNA   83 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHHH
T ss_pred             EEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHHH
Confidence            488999999999999999999999888887763     11011 11111             111222345677777777


Q ss_pred             HHHHhcccC
Q 024881          249 LESLIMFEP  257 (261)
Q Consensus       249 Leels~~~~  257 (261)
                      ++++.+..+
T Consensus        84 i~~i~~~g~   92 (409)
T 3eph_A           84 IEDIHRRGK   92 (409)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHhcCC
Confidence            877765443

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.10  E-value=0.0035  Score=49.74  Aligned_cols=41  Identities=15%  Similarity=0.085  Sum_probs=20.9

Q ss_pred             ccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHH
Q 024881          168 DIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       168 ~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      |++.....+...+.-..+..+|.++|++|+||||+.+.|..
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B            5 DIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -------------------CEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence            44444666666665555667899999999999999999986

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.01  E-value=0.0051  Score=53.56  Aligned_cols=34  Identities=9%  Similarity=-0.061  Sum_probs=29.7

Q ss_pred             HHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +..++. .-+|..+.|+|.+||||||+.+.|+..+
T Consensus        16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            566776 7788899999999999999999999865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.00  E-value=0.0025  Score=55.83  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      ..|.-|.|+|++|+||||++.+||++.+ .++..|.
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            4677899999999999999999999976 7776653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.96  E-value=0.004  Score=51.90  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=23.2

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |..+.|+|.+|+||||+.+.||..+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            5679999999999999999999987

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.96  E-value=0.0046  Score=52.65  Aligned_cols=29  Identities=14%  Similarity=0.137  Sum_probs=26.2

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc---CC
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL---GY  212 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L---gY  212 (261)
                      ++|.-|.+.|..||||||+++.|++.|   ||
T Consensus         1 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~   32 (213)
T 4tmk_A            1 MRSKYIVIEGLEGAGKTTARNVVVETLEQLGI   32 (213)
T ss_dssp             -CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            478899999999999999999999988   66

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.94  E-value=0.0063  Score=50.93  Aligned_cols=50  Identities=16%  Similarity=0.240  Sum_probs=33.6

Q ss_pred             ecCCCCCCcccccchhHHHHHHHhhcCCc---eEEEEecCCCchhHHHHHHHHhc
Q 024881          159 KQDPELKWPDIVESWESLTAGSMQLLKGT---SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       159 K~d~~m~Wp~~~e~We~l~~g~~~lLkG~---sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |..+ ..|.+++-. +.+.+-+.+.++..   +++|.|+.|+|||++++.+|+.+
T Consensus        10 k~~p-~~~~~~~g~-~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           10 KYRP-RTLDEVVGQ-DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             TTSC-SSGGGSCSC-HHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             hcCC-CCHHHHhCC-HHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            3444 555555422 23344444444322   59999999999999999999987

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.92  E-value=0.0056  Score=49.01  Aligned_cols=26  Identities=19%  Similarity=0.132  Sum_probs=23.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+.|+|.+|+||||+.+.||..+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56779999999999999999999743

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.92  E-value=0.0074  Score=53.54  Aligned_cols=46  Identities=17%  Similarity=0.090  Sum_probs=34.0

Q ss_pred             hhHHHHHHHhhc----------CCceEEEEecCCCchhHHHHHHHHhc----CCC--ccCcH
Q 024881          173 WESLTAGSMQLL----------KGTSIFLVGDSTEVNEKVALELAVGL----GYT--PLSTK  218 (261)
Q Consensus       173 We~l~~g~~~lL----------kG~sIyLVGmmGsGKSTVGr~LA~~L----gY~--fvDTD  218 (261)
                      |+.+...+.++|          +|..|.|+|.+|+||||+...||..+    |+.  ++|.|
T Consensus        82 ~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D  143 (296)
T 2px0_A           82 VGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD  143 (296)
T ss_dssp             HHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             HHHHHHHHHHHhCCcccccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            556666666554          57789999999999999999999654    543  45554

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.92  E-value=0.0047  Score=53.62  Aligned_cols=30  Identities=10%  Similarity=0.037  Sum_probs=25.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ..++|.-|.+.|..|+||||+++.|++.|+
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346788999999999999999999999884

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.0036  Score=59.29  Aligned_cols=30  Identities=10%  Similarity=0.075  Sum_probs=27.8

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      -|.|.|++|+|||.+++.+|..+|.+|+..
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            499999999999999999999999998754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.0037  Score=59.36  Aligned_cols=32  Identities=16%  Similarity=0.030  Sum_probs=28.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      ...|.|.|++|+|||.+++.+|..+|.+|+..
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v  246 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQTNATFLKL  246 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            34699999999999999999999999998653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.89  E-value=0.005  Score=48.92  Aligned_cols=28  Identities=18%  Similarity=0.175  Sum_probs=23.7

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+++.||..+
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3457789999999999999999999654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.89  E-value=0.0056  Score=52.79  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=27.9

Q ss_pred             HHHHHHHhhc----CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          175 SLTAGSMQLL----KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       175 ~l~~g~~~lL----kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+.+-+.+.+    ++.++.|+|++|+||||+++.||..|
T Consensus        21 ~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           21 ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             HHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4445555555    33459999999999999999999965

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.88  E-value=0.0038  Score=63.61  Aligned_cols=48  Identities=13%  Similarity=0.104  Sum_probs=40.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCCC---HHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQT---IDSWML  234 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agkS---I~eIFa  234 (261)
                      ..|.|.|++|+|||.+|+.+|..+|.+|+  +..+|+.+..|.|   |.++|.
T Consensus       512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~  564 (806)
T 3cf2_A          512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFD  564 (806)
T ss_dssp             SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHH
Confidence            35899999999999999999999999987  5568888887776   555664

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.0042  Score=59.06  Aligned_cols=40  Identities=13%  Similarity=0.248  Sum_probs=32.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHHhC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAK  226 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~ag  226 (261)
                      ..|.|.|++|+|||.+++.+|..+|.+|+..  .+++.+..|
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G  257 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG  257 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence            4699999999999999999999999998753  445444433

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.78  E-value=0.0051  Score=55.04  Aligned_cols=27  Identities=19%  Similarity=-0.053  Sum_probs=24.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-|.|+|.+||||||+++.|+..+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            457789999999999999999999876

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.77  E-value=0.0027  Score=64.63  Aligned_cols=48  Identities=17%  Similarity=0.183  Sum_probs=36.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCCC---HHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQT---IDSWML  234 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agkS---I~eIFa  234 (261)
                      ..|.|.|++|+|||+++|.+|..+|.+|+  |..+++.+..|.+   +.++|.
T Consensus       239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~  291 (806)
T 3cf2_A          239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE  291 (806)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHH
Confidence            46999999999999999999999999986  4456665544433   444444

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.74  E-value=0.0061  Score=58.44  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=29.2

Q ss_pred             HHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .-...++.|.+|.|+|++|+|||++++.||..++
T Consensus        33 ~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           33 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             HHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             HHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence            3344567788999999999999999999999885

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.73  E-value=0.0054  Score=56.84  Aligned_cols=35  Identities=17%  Similarity=0.092  Sum_probs=30.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      ..-+|..|.|+|++|+||||+++.||..++..++.
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            34467789999999999999999999999877665

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.72  E-value=0.0051  Score=57.67  Aligned_cols=32  Identities=16%  Similarity=0.001  Sum_probs=29.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      .+++|.|++|+||||+++.+|+.++..|+...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~   82 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERIS   82 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            47999999999999999999999999887654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.72  E-value=0.0047  Score=54.78  Aligned_cols=40  Identities=15%  Similarity=0.011  Sum_probs=29.9

Q ss_pred             chhHHHHHHHhh-----cCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          172 SWESLTAGSMQL-----LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       172 ~We~l~~g~~~l-----LkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .-+.|.+-+.+.     =+|.-|.|+|.+||||||+++.|+..|+
T Consensus        12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            344455555442     2355699999999999999999999886

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.71  E-value=0.0047  Score=52.72  Aligned_cols=27  Identities=11%  Similarity=0.028  Sum_probs=23.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|.+||||||+.+.||..+
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            356679999999999999999998654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.68  E-value=0.0071  Score=49.68  Aligned_cols=26  Identities=12%  Similarity=0.055  Sum_probs=22.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-++++|+||+||||.+..+|.++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            57778899999999999997777654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.67  E-value=0.0055  Score=51.83  Aligned_cols=27  Identities=19%  Similarity=0.153  Sum_probs=23.2

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|.+||||||+.+.||..+
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356668999999999999999998655

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.66  E-value=0.0056  Score=58.19  Aligned_cols=36  Identities=19%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELL  221 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLI  221 (261)
                      ..+|+|.|.+|+|||++++.+|..+|.+|+.  ..++.
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~  275 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM  275 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence            3579999999999999999999999988874  34444

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.64  E-value=0.0048  Score=52.79  Aligned_cols=27  Identities=19%  Similarity=0.137  Sum_probs=24.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .+.+|+|.|.+|+|||++++.+|+.++
T Consensus        44 ~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           44 GIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCceEEEECCCCccHHHHHHHHHHhCc
Confidence            345799999999999999999999997

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.60  E-value=0.0065  Score=51.31  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=24.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +-+|..+.|+|.+||||||+.+.||..
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            457889999999999999999999853

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.58  E-value=0.0054  Score=58.12  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=31.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCc--HHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETF  224 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT--DeLIEq~  224 (261)
                      ..|.|.|++|+|||.+++.+|..+|.+|+..  .+++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~  222 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY  222 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred             CceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence            4599999999999999999999999999653  3444433

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.53  E-value=0.0079  Score=55.73  Aligned_cols=37  Identities=8%  Similarity=0.166  Sum_probs=29.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc-----CCC--ccCcHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYT--PLSTKELLE  222 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L-----gY~--fvDTDeLIE  222 (261)
                      +.+++|.|++|+||||+++.+|..+     |+.  +++..++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~  173 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN  173 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence            5689999999999999999999988     655  446655543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.52  E-value=0.0081  Score=51.55  Aligned_cols=44  Identities=14%  Similarity=0.030  Sum_probs=30.7

Q ss_pred             HHHHHHHhhcC-Cc--eEEEE-ecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          175 SLTAGSMQLLK-GT--SIFLV-GDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       175 ~l~~g~~~lLk-G~--sIyLV-GmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      .+.+-+.+.++ |.  ++||+ |++|+|||++++.+|+.+|+.++..+
T Consensus        33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            33444444443 22  56665 55999999999999999998887543

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.52  E-value=0.013  Score=51.76  Aligned_cols=45  Identities=11%  Similarity=0.031  Sum_probs=34.8

Q ss_pred             cccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          169 IVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       169 ~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      ..+.|..+...+.+-=-+-.+.|.|+.|+|||++++.+|+.|+-.
T Consensus         7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A            7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            667787777776643223348899999999999999999999753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.51  E-value=0.011  Score=46.47  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=23.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      .| -..|+|.+|+||||+.+.|+-.|+-
T Consensus        26 ~g-~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           26 KG-FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            45 3679999999999999999998864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.50  E-value=0.0063  Score=52.01  Aligned_cols=28  Identities=14%  Similarity=0.197  Sum_probs=24.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+||||||+.+.||..+
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456779999999999999999998764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.49  E-value=0.0069  Score=52.43  Aligned_cols=35  Identities=11%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      ..|.-|.|.|++|+||||++.+|.++ |++++.-|.
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~   48 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDV   48 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCE
Confidence            46788999999999999999999986 998886553

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.48  E-value=0.0078  Score=53.61  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=29.9

Q ss_pred             hhHHHHHHHhhc--------------CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          173 WESLTAGSMQLL--------------KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       173 We~l~~g~~~lL--------------kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |+.+...+.++|              +|.-+.|||.+|+||||+.+.||..+
T Consensus        73 ~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           73 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             HHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            566666665554              35568899999999999999999876

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.46  E-value=0.014  Score=50.29  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=23.1

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      .+.|.|+.|+|||++++.+|+.++.
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999975

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.46  E-value=0.0081  Score=51.63  Aligned_cols=27  Identities=22%  Similarity=0.169  Sum_probs=23.5

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +-+|.-+.|+|.+|+||||+.+.||..
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           26 VPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            446667999999999999999999975

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.45  E-value=0.0067  Score=51.82  Aligned_cols=28  Identities=14%  Similarity=0.176  Sum_probs=23.7

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+||||||+.+.||..+
T Consensus        29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           29 VPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456678999999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.45  E-value=0.0068  Score=51.43  Aligned_cols=28  Identities=11%  Similarity=0.216  Sum_probs=24.1

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+||||||+.+.||..+
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           31 IERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467779999999999999999999764

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.45  E-value=0.0099  Score=49.80  Aligned_cols=23  Identities=17%  Similarity=0.069  Sum_probs=21.9

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +++|.|+.|+|||++++.+|+.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            59999999999999999999987

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.44  E-value=0.0085  Score=53.55  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=23.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|..|.|||.+|+||||+.+.||..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999999765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.43  E-value=0.0068  Score=51.77  Aligned_cols=29  Identities=14%  Similarity=-0.010  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+||||||+.+.||..+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34467779999999999999999998654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.42  E-value=0.0083  Score=54.28  Aligned_cols=35  Identities=11%  Similarity=0.026  Sum_probs=28.3

Q ss_pred             HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +..++. .+=+|..+.|||.+|+||||+.+.|+..+
T Consensus       115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            344444 44578889999999999999999999875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.41  E-value=0.007  Score=52.15  Aligned_cols=28  Identities=18%  Similarity=0.133  Sum_probs=23.9

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+||||||+.+.||..+
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456679999999999999999998765

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=95.39  E-value=0.14  Score=39.35  Aligned_cols=75  Identities=12%  Similarity=0.144  Sum_probs=60.2

Q ss_pred             EEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCc----------ceeeeecccccCCCCCCceeeEE-ec
Q 024881           82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS----------FITLIETNQLFDKIKPTETIWYI-DE  150 (261)
Q Consensus        82 ~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~----------~~tlId~g~L~~kIk~~Et~W~I-dD  150 (261)
                      +..++...+.|.+.||+   .+..||.|.++++.|.|.-++...          +..-+   .|++.|.++.-.-.+ +|
T Consensus         6 ~i~e~~~~~~v~~dlPG---~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~---~LP~~vd~~~i~A~~s~~   79 (106)
T 3l1e_A            6 EVRSDRDKFVIFLDVKH---FSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRY---RLPSNVDQSALSCSLSAD   79 (106)
T ss_dssp             EEEECSSEEEEEEECTT---SCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEE---ECCTTBCTTSCEEEECTT
T ss_pred             EEEEcCCEEEEEEECCC---CChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEE---ECCCCcChhHcEEEECCC
Confidence            35578889999999998   688999999999999998865311          21112   478889998888889 89


Q ss_pred             CeEEEEEEecCC
Q 024881          151 DQLVINLKKQDP  162 (261)
Q Consensus       151 ~~lvv~L~K~d~  162 (261)
                      ..|.|.+.|..+
T Consensus        80 GvL~I~~PK~~~   91 (106)
T 3l1e_A           80 GMLTFSGPKIPS   91 (106)
T ss_dssp             SEEEEEEEBCCC
T ss_pred             CEEEEEEEccCc
Confidence            999999999876

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.38  E-value=0.0072  Score=52.49  Aligned_cols=27  Identities=15%  Similarity=0.069  Sum_probs=23.4

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|.+||||||+.+.||..+
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356668999999999999999999765

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.38  E-value=0.012  Score=57.14  Aligned_cols=28  Identities=25%  Similarity=0.396  Sum_probs=26.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      +++|+|++|+|||++++.||+.+|.+|+
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~  517 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELL  517 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence            6999999999999999999999997765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.37  E-value=0.0091  Score=53.30  Aligned_cols=39  Identities=10%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      |+.|-..+.+.| |..+.|||.+||||||+.+.||..+..
T Consensus       158 ~~~v~~~v~~~l-g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          158 WKFIPKEARPFF-AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             GGGSCTTTGGGT-CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hhhCCHHHHHhh-hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            444333333333 677999999999999999999998654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.34  E-value=0.0076  Score=51.97  Aligned_cols=29  Identities=14%  Similarity=0.161  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|.-+.|+|.+||||||+.+.||..+
T Consensus        29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           29 SVNKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34467779999999999999999998655

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.33  E-value=0.0077  Score=52.66  Aligned_cols=28  Identities=14%  Similarity=0.168  Sum_probs=23.6

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+||||||+.+.||..+
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3356668999999999999999998755

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.0067  Score=58.68  Aligned_cols=39  Identities=21%  Similarity=0.195  Sum_probs=31.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETF  224 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~  224 (261)
                      .+.|.|.|++|+|||.+++.+|..+|.+|+.  ..+++.+.
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~  283 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY  283 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc
Confidence            3569999999999999999999999999864  34444433

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.31  E-value=0.01  Score=51.45  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=28.0

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcC---CCccCcHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLE  222 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~Lg---Y~fvDTDeLIE  222 (261)
                      -|.++||+||||++|++.|.+++|   +..+.--+.|-
T Consensus        13 II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK   50 (202)
T 3ch4_B           13 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK   50 (202)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence            488999999999999999999896   55555555553

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.29  E-value=0.0097  Score=51.81  Aligned_cols=28  Identities=14%  Similarity=0.113  Sum_probs=24.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+||||||+.+.||..+
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456679999999999999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.28  E-value=0.018  Score=46.30  Aligned_cols=42  Identities=17%  Similarity=0.139  Sum_probs=33.1

Q ss_pred             cccchhHHHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          169 IVESWESLTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       169 ~~e~We~l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.+.++-....+.+++   +-..|.++|+.|+||||+...|+..+
T Consensus        18 ~~~~~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           18 ILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4566666776666654   34579999999999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.25  E-value=0.0085  Score=52.01  Aligned_cols=28  Identities=25%  Similarity=0.190  Sum_probs=24.1

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+||||||+.+.|+..+
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3467779999999999999999998654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.25  E-value=0.021  Score=48.01  Aligned_cols=36  Identities=8%  Similarity=-0.016  Sum_probs=28.1

Q ss_pred             HHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          177 TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       177 ~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      .+-+.+ +....++|.|+.|.|||++.+.+++.++..
T Consensus        22 l~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~~~~   57 (357)
T 2fna_A           22 IEKLKG-LRAPITLVLGLRRTGKSSIIKIGINELNLP   57 (357)
T ss_dssp             HHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             HHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            334444 444579999999999999999999988653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.24  E-value=0.0085  Score=52.41  Aligned_cols=28  Identities=29%  Similarity=0.196  Sum_probs=24.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+||||||+.+.||..+
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           42 LYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456679999999999999999998765

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.23  E-value=0.02  Score=50.31  Aligned_cols=44  Identities=18%  Similarity=0.157  Sum_probs=32.7

Q ss_pred             chhHHHHHHHhhc-CCceEEEEecCCCchhHHHHHHHHhc---CCCcc
Q 024881          172 SWESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL  215 (261)
Q Consensus       172 ~We~l~~g~~~lL-kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv  215 (261)
                      .+..+..-+.... .+.+|+|.|.+|+|||++++.++..+   +++|+
T Consensus        10 ~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v   57 (304)
T 1ojl_A           10 AMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLV   57 (304)
T ss_dssp             HHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCC
T ss_pred             HHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeE
Confidence            3455555555543 35689999999999999999999965   55554

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.23  E-value=0.016  Score=51.04  Aligned_cols=31  Identities=23%  Similarity=0.248  Sum_probs=27.4

Q ss_pred             HHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+.+.++|.-+.|+|.+|+||||+.+.|+ .+
T Consensus       158 ~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          158 ELVDYLEGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             HHHHHTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             HHHhhccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            35577899999999999999999999999 55

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.20  E-value=0.0088  Score=52.84  Aligned_cols=28  Identities=11%  Similarity=0.118  Sum_probs=23.4

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+||||||+.+.|+..+
T Consensus        31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           31 IKRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            3356669999999999999999998655

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.20  E-value=0.018  Score=52.38  Aligned_cols=24  Identities=17%  Similarity=0.047  Sum_probs=22.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      -|.|+|.+||||||+++.|+..|+
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            499999999999999999999986

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=95.18  E-value=0.16  Score=37.43  Aligned_cols=71  Identities=13%  Similarity=0.202  Sum_probs=54.8

Q ss_pred             cccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC----------cceeeeecccccCCCCCCceeeEEe-cCe
Q 024881           84 SDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG----------SFITLIETNQLFDKIKPTETIWYID-EDQ  152 (261)
Q Consensus        84 Tqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~----------~~~tlId~g~L~~kIk~~Et~W~Id-D~~  152 (261)
                      +++-.+..|.+.||+   .+..||.|.++++.|+|.-++..          .+..-+   .|++.|.++.-.=.++ |..
T Consensus         3 ~E~~~~~~v~~dlPG---~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~---~LP~~vd~~~i~A~~~~~Gv   76 (85)
T 3q9p_A            3 SHTADRWRVSLDVNH---FAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKY---TLPPGVDPTQVSSSLSPEGT   76 (85)
T ss_dssp             CCCCCEEEEEEECTT---TCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEE---ECCTTCCGGGCEEEECTTSE
T ss_pred             cCcCCEEEEEEECCC---CChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEE---ECCCCcChHHcEEEECCCCE
Confidence            356778999999998   78899999999999999887542          232222   3778888776666676 899


Q ss_pred             EEEEEEec
Q 024881          153 LVINLKKQ  160 (261)
Q Consensus       153 lvv~L~K~  160 (261)
                      |.|.+-|-
T Consensus        77 L~I~lPK~   84 (85)
T 3q9p_A           77 LTVEAPMP   84 (85)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            99999884

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.18  E-value=0.0091  Score=52.32  Aligned_cols=26  Identities=15%  Similarity=0.153  Sum_probs=22.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+.|+|.+||||||+.+.||..+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            45569999999999999999999765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.17  E-value=0.0093  Score=51.76  Aligned_cols=29  Identities=17%  Similarity=0.187  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|+|.+|+||||+.+.||..+
T Consensus        22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           22 EVRAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34467778999999999999999998765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.16  E-value=0.0093  Score=51.80  Aligned_cols=28  Identities=11%  Similarity=0.205  Sum_probs=23.5

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+||||||+.+.||..+
T Consensus        30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           30 INEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3356678999999999999999998654

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=95.16  E-value=0.12  Score=39.29  Aligned_cols=78  Identities=15%  Similarity=0.189  Sum_probs=60.2

Q ss_pred             EEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCc-----c--eeeeecccccCCCCCCceeeEE-ecCeE
Q 024881           82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS-----F--ITLIETNQLFDKIKPTETIWYI-DEDQL  153 (261)
Q Consensus        82 ~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~-----~--~tlId~g~L~~kIk~~Et~W~I-dD~~l  153 (261)
                      .+.++..++.|++.||+   .+..||.|+++++.|.|.-++...     .  +..--.=.|++.|.++.-.-.+ +|..|
T Consensus         5 di~e~~~~~~v~~dlPG---~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL   81 (101)
T 2wj5_A            5 QVPTDPGYFSVLLDVKH---FSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVL   81 (101)
T ss_dssp             CCCCCSSCEEEEEECTT---SCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEE
T ss_pred             EEEEeCCEEEEEEECCC---CcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEE
Confidence            45677889999999998   677899999999999998866421     1  0001112578889998888889 89999


Q ss_pred             EEEEEecCC
Q 024881          154 VINLKKQDP  162 (261)
Q Consensus       154 vv~L~K~d~  162 (261)
                      .|.+.|...
T Consensus        82 ~I~lPK~~~   90 (101)
T 2wj5_A           82 SIQATPASA   90 (101)
T ss_dssp             EEEECBCCC
T ss_pred             EEEEECCCc
Confidence            999999765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.15  E-value=0.0093  Score=52.57  Aligned_cols=28  Identities=18%  Similarity=0.067  Sum_probs=23.9

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+||||||+.+.||..+
T Consensus        44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           44 IAKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3456679999999999999999999765

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.0099  Score=57.11  Aligned_cols=31  Identities=19%  Similarity=0.112  Sum_probs=28.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      ..|.|.|++|+|||.+++.+|..+|.+|+..
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence            4599999999999999999999999998754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.12  E-value=0.01  Score=56.96  Aligned_cols=29  Identities=17%  Similarity=0.158  Sum_probs=26.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      .|+|+|++|+|||++++.+|..++.+|+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~~~i~   94 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARVPFIT   94 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            49999999999999999999999877654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.09  E-value=0.011  Score=53.52  Aligned_cols=30  Identities=10%  Similarity=0.119  Sum_probs=26.2

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ..-+|.++.|+|.+||||||+.+.|+..+.
T Consensus       171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          171 AVQLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             HHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            445788999999999999999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.08  E-value=0.0095  Score=50.71  Aligned_cols=27  Identities=15%  Similarity=0.117  Sum_probs=23.0

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|.+||||||+.+.||..+
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345568999999999999999998754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.06  E-value=0.01  Score=51.66  Aligned_cols=28  Identities=11%  Similarity=0.100  Sum_probs=24.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+||||||+.+.||..+
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3466679999999999999999998765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.03  E-value=0.013  Score=49.30  Aligned_cols=67  Identities=16%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc-----------------------CCCccCcHHHHHHHh---------------CCCH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFA---------------KQTI  229 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L-----------------------gY~fvDTDeLIEq~a---------------gkSI  229 (261)
                      -|+|+|++|+||+|+.+.|.+.+                       .|.|++-++.-+...               |-+.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            48999999999999999997653                       377888777665543               3333


Q ss_pred             HHHH--HhhCchhHHhhHHHHHHHHhc
Q 024881          230 DSWM--LAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       230 ~eIF--aeeGE~~FRelEs~VLeels~  254 (261)
                      +++-  .++|....-+++-+.+.++-.
T Consensus        83 ~~v~~~l~~g~~vil~id~~g~~~~k~  109 (186)
T 1ex7_A           83 ASVKQVSKSGKTCILDIDMQGVKSVKA  109 (186)
T ss_dssp             HHHHHHHHHTSEEEEECCHHHHHHHHT
T ss_pred             ceeeehhhCCCEEEecCCHHHHHHHHH
Confidence            3322  345666666666666666654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.02  E-value=0.011  Score=51.24  Aligned_cols=28  Identities=18%  Similarity=0.027  Sum_probs=23.5

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+||||||+.+.||..+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           28 LNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456678999999999999999998653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.99  E-value=0.014  Score=52.95  Aligned_cols=26  Identities=27%  Similarity=0.165  Sum_probs=23.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-|.|||.+|+||||+.+.||..+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999999765

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.97  E-value=0.023  Score=50.94  Aligned_cols=38  Identities=24%  Similarity=0.190  Sum_probs=30.4

Q ss_pred             hhHHHHHHHhhcC-----------CceEEEEecCCCchhHHHHHHHHhc
Q 024881          173 WESLTAGSMQLLK-----------GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       173 We~l~~g~~~lLk-----------G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |+.|...+.++|.           |.-|.++|.+|+||||+.+.||..+
T Consensus        80 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A           80 LESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             HHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            6666666666653           3458899999999999999999876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.96  E-value=0.015  Score=47.00  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=22.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +|.-+.|+|.+|+||||+++.||..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            5677999999999999999999983

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.96  E-value=0.012  Score=53.94  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      .|.-|.|+|++|+||||++..|.++ |++++.-|.
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~  176 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDN  176 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCe
Confidence            4889999999999999999999887 999985553

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.94  E-value=0.015  Score=46.20  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=27.8

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCC--ccCcHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKE  219 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDTDe  219 (261)
                      +-+|.-+.|+|.+|+||||+++.||..-|..  ++|+++
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            3457779999999999999999999744432  455543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.91  E-value=0.015  Score=51.03  Aligned_cols=32  Identities=22%  Similarity=0.178  Sum_probs=27.3

Q ss_pred             HHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+.+.++|.-+.|+|.+|+||||+.+.|+..+
T Consensus       162 ~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          162 ELKEYLKGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             HHHHHHSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             HHHHHhcCCeEEEECCCCCcHHHHHHHhcccc
Confidence            34567789999999999999999999998654

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=94.89  E-value=0.12  Score=38.41  Aligned_cols=72  Identities=13%  Similarity=0.180  Sum_probs=53.7

Q ss_pred             ccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCc----------ceeeeecccccCCCCCCceeeEE-ecCeE
Q 024881           85 DGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS----------FITLIETNQLFDKIKPTETIWYI-DEDQL  153 (261)
Q Consensus        85 qtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~----------~~tlId~g~L~~kIk~~Et~W~I-dD~~l  153 (261)
                      ++-..+.|.+.||+   .+..||.|.++++.|.|.-++...          +..-+   .|.+.|.++.-.-.+ +|..|
T Consensus         3 ~~~~~~~v~~dlPG---~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~---~LP~~vd~~~i~A~~~~~GvL   76 (90)
T 2y1y_A            3 MEKDRFSVNLDVKH---FSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKY---RIPADVDPLTITSSMSSDGVL   76 (90)
T ss_dssp             ---CCEEEEEECTT---SCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEE---ECCTTBCGGGCEEEECTTSEE
T ss_pred             cCCCEEEEEEECCC---CcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEE---ECCCCcChhHcEEEECCCCEE
Confidence            35567899999998   677899999999999998875321          21112   477888888777789 89999


Q ss_pred             EEEEEecCC
Q 024881          154 VINLKKQDP  162 (261)
Q Consensus       154 vv~L~K~d~  162 (261)
                      .|.+.|...
T Consensus        77 ~I~~pK~~~   85 (90)
T 2y1y_A           77 TVNGPRKQV   85 (90)
T ss_dssp             EEEECBC--
T ss_pred             EEEEEcCCC
Confidence            999998764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.87  E-value=0.015  Score=55.69  Aligned_cols=38  Identities=11%  Similarity=0.057  Sum_probs=30.5

Q ss_pred             HHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881          177 TAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTP  214 (261)
Q Consensus       177 ~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~f  214 (261)
                      ...+. .+-.|.++.|+|++|+||||+++.||..++...
T Consensus        50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~   88 (604)
T 3k1j_A           50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET   88 (604)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred             HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence            34443 445678999999999999999999999997543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.79  E-value=0.016  Score=53.40  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             hhHHHHHHHhhc--------------CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          173 WESLTAGSMQLL--------------KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       173 We~l~~g~~~lL--------------kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |+.|...+.++|              +|.-|.|||.+|+||||+.+.||..+
T Consensus       130 ~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          130 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             HHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            666666666555              35568899999999999999999876

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.78  E-value=0.01  Score=53.38  Aligned_cols=26  Identities=23%  Similarity=0.151  Sum_probs=22.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|..+.|||.+||||||+.+.|+..+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            45569999999999999999998654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.77  E-value=0.019  Score=44.92  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=22.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +|..|.|||.+|+||||+.+.|+..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.77  E-value=0.01  Score=59.13  Aligned_cols=36  Identities=17%  Similarity=0.198  Sum_probs=27.8

Q ss_pred             HHHHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          175 SLTAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       175 ~l~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ..+.-+.+.|   ...+++|+|.+|+|||++++.||+.+
T Consensus       177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3444444444   23479999999999999999999998

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.75  E-value=0.01  Score=48.87  Aligned_cols=23  Identities=17%  Similarity=0.159  Sum_probs=21.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .|.|||.+||||||+.+.|+..+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999875

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=94.74  E-value=0.011  Score=57.45  Aligned_cols=27  Identities=11%  Similarity=0.156  Sum_probs=24.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTP  214 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~f  214 (261)
                      ||.|+|++|+|||++++.+|+.++..+
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r~~  355 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPRAV  355 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSCEE
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCCce
Confidence            899999999999999999999997443

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=94.74  E-value=0.031  Score=47.18  Aligned_cols=55  Identities=15%  Similarity=0.037  Sum_probs=44.6

Q ss_pred             cchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC---ccCcHHHHHHHh
Q 024881          171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFA  225 (261)
Q Consensus       171 e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~---fvDTDeLIEq~a  225 (261)
                      +-.+.=..++..++++.++.|+|++|+|||.++..++..++.+   ++.+.+|++|..
T Consensus        93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~  150 (237)
T 2fz4_A           93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWK  150 (237)
T ss_dssp             CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHH
Confidence            3466667778888999999999999999999999999998654   356778877754

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=94.71  E-value=0.0068  Score=56.06  Aligned_cols=56  Identities=18%  Similarity=-0.067  Sum_probs=41.2

Q ss_pred             HHhhcCCceEEEEecCCCchhHHH-HHHHHhcCCC--ccCcHHHHH---HHhC-CCHHHHHHh
Q 024881          180 SMQLLKGTSIFLVGDSTEVNEKVA-LELAVGLGYT--PLSTKELLE---TFAK-QTIDSWMLA  235 (261)
Q Consensus       180 ~~~lLkG~sIyLVGmmGsGKSTVG-r~LA~~LgY~--fvDTDeLIE---q~ag-kSI~eIFae  235 (261)
                      .+...+|.-|+|-|..|+||||+. +.|++.|+..  .+=+.|=..   ..-| ..|.+++.+
T Consensus         6 ~~~~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~vv~trEPgg~w~t~~g~e~lr~i~l~   68 (341)
T 1osn_A            6 TDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGT   68 (341)
T ss_dssp             --CCEEEEEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCCHHHHTTBTTBCHHHHHHHH
T ss_pred             ccccCCceEEEEeCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCccccCcccHHHHHHHHhc
Confidence            345678999999999999999999 9999999865  444555444   2335 667777753

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.71  E-value=0.017  Score=56.13  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=24.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+.+++|+|.+|+|||++++.||+.+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999999988

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=94.70  E-value=0.013  Score=53.99  Aligned_cols=52  Identities=15%  Similarity=0.053  Sum_probs=38.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCC--ccCcHHHHH---HHhC-CCHHHHHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLE---TFAK-QTIDSWML  234 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDTDeLIE---q~ag-kSI~eIFa  234 (261)
                      ..+|+-|++-|..|+||||+++.||+.|+..  .+-+.|=..   ..-| ..|.++..
T Consensus         4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~~~~v~~trEPg~~w~~~~g~e~ir~~~~   61 (334)
T 1p6x_A            4 MVTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYD   61 (334)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCCHHHHHTSSSSCHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhccCCcEEEEeCCCCccccccchHHHHHHHH
Confidence            4578889999999999999999999999764  333444332   2334 66677764

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=94.68  E-value=0.009  Score=56.11  Aligned_cols=58  Identities=9%  Similarity=0.004  Sum_probs=35.6

Q ss_pred             HHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC-ccCcHHHHHHH---hC-CCHHHHHHh
Q 024881          178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETF---AK-QTIDSWMLA  235 (261)
Q Consensus       178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~-fvDTDeLIEq~---ag-kSI~eIFae  235 (261)
                      .|-.+..+|+-|+|-|.-|+||||+++.||+.|+.. ++-+.|=...-   .| ..|.++..+
T Consensus        41 ~~~~~~~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~trEPg~~w~~~~gn~~Lr~~yld  103 (376)
T 1of1_A           41 RPEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTT  103 (376)
T ss_dssp             -----CCEEEEEEECSSTTSSHHHHHHHHHC----CCEEEECCCHHHHHTTSSSCHHHHHHHH
T ss_pred             ccccCCCCceEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCccccccchHHHHHHHhC
Confidence            455667889999999999999999999999998632 44444433322   23 566677653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.64  E-value=0.019  Score=42.58  Aligned_cols=25  Identities=8%  Similarity=0.312  Sum_probs=21.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +..+|.++|..|+||||+...|...
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            4468999999999999999888754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.64  E-value=0.023  Score=45.83  Aligned_cols=26  Identities=8%  Similarity=0.087  Sum_probs=22.4

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -+|..+.|+|.+|+||||++..+|..
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            36778999999999999999888764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.63  E-value=0.021  Score=42.13  Aligned_cols=24  Identities=13%  Similarity=0.217  Sum_probs=21.2

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.++|..|+||||+...|+..
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999999765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.62  E-value=0.017  Score=51.40  Aligned_cols=28  Identities=11%  Similarity=0.216  Sum_probs=23.9

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3356678999999999999999998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.56  E-value=0.0096  Score=47.09  Aligned_cols=28  Identities=14%  Similarity=0.084  Sum_probs=23.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..-+|..|.|+|.+|+||||+.+.|+..
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4557889999999999999999888744

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.53  E-value=0.022  Score=47.81  Aligned_cols=31  Identities=19%  Similarity=0.154  Sum_probs=25.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc--CCCccC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLS  216 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L--gY~fvD  216 (261)
                      |.=|.+-|.-||||||..+.|++.|  ||..+-
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~   34 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM   34 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence            3347788999999999999999999  776553

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.53  E-value=0.018  Score=49.66  Aligned_cols=23  Identities=13%  Similarity=-0.031  Sum_probs=20.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+.|+|.+||||||+.+.||..+
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999654

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=94.51  E-value=0.095  Score=43.45  Aligned_cols=87  Identities=7%  Similarity=0.128  Sum_probs=70.2

Q ss_pred             CCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCC---CceeeEEecCeEE
Q 024881           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKP---TETIWYIDEDQLV  154 (261)
Q Consensus        78 t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~---~Et~W~IdD~~lv  154 (261)
                      |+.|.=||+-..|-|.|-+|.. ..+..++.++++++-+.+..+..- ++  +   .|..+|.-   ....|-.|...+.
T Consensus         3 TP~F~itQd~e~viV~Ik~P~~-~~~~sdiei~v~~~~F~F~~~PYy-LR--L---~LP~~V~e~~~~kA~YD~d~~~~~   75 (134)
T 2k8q_A            3 TPRFSITQDEEFIFLKIFISNI-RFSAVGLEIIIQENMIIFHLSPYY-LR--L---RFPHELIDDERSTAQYDSKDECIN   75 (134)
T ss_dssp             CSEEEEEECSSEEEEEEECCSS-CCCSSSCCCEECSSSEEECSSSSC-EE--E---CCSSCEECCSSCEEEEETTTTEEE
T ss_pred             CceEEEEECCCEEEEEEEcCcc-ccCccccEEEEeCCEEEEecCCeE-EE--e---cCCCeeecCCCcceeEeccCCEEE
Confidence            6789999999999999999993 224899999999999999888773 32  2   35566633   3467888889999


Q ss_pred             EEEEecCCCCCCccccc
Q 024881          155 INLKKQDPELKWPDIVE  171 (261)
Q Consensus       155 v~L~K~d~~m~Wp~~~e  171 (261)
                      |.|.|.++--.+||+.-
T Consensus        76 VtLpK~~~Ge~F~dLD~   92 (134)
T 2k8q_A           76 VKVAKLNKNEYFEDLDL   92 (134)
T ss_dssp             EEEEESSTTCCCSSTTC
T ss_pred             EEEeCCCCCCCCCCccc
Confidence            99999999889988763

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.48  E-value=0.021  Score=52.01  Aligned_cols=28  Identities=11%  Similarity=0.010  Sum_probs=25.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .-+|..+.|+|.+||||||+.+.|+..+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4578889999999999999999999865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.48  E-value=0.025  Score=43.10  Aligned_cols=30  Identities=17%  Similarity=0.114  Sum_probs=22.3

Q ss_pred             HHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       180 ~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+...+-.+|.++|+.|+||||+...|...
T Consensus         2 s~~~~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            2 SMSASRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -----CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            344456678999999999999999988764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.47  E-value=0.025  Score=48.11  Aligned_cols=28  Identities=29%  Similarity=0.316  Sum_probs=24.7

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+|+||||+++.+|..+
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            5688889999999999999999998644

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.47  E-value=0.016  Score=50.38  Aligned_cols=25  Identities=8%  Similarity=0.038  Sum_probs=22.3

Q ss_pred             CceEEE--EecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFL--VGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyL--VGmmGsGKSTVGr~LA~~L  210 (261)
                      +..++|  +|+.|+|||++++.+++.+
T Consensus        50 ~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           50 DVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            456888  8999999999999999887

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=94.46  E-value=0.025  Score=47.49  Aligned_cols=30  Identities=10%  Similarity=-0.046  Sum_probs=25.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CCCc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTP  214 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~f  214 (261)
                      +|.=++++|.||+||||.+..+|.++   |+..
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV   39 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKI   39 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence            46668899999999999999998887   6543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.43  E-value=0.018  Score=50.45  Aligned_cols=25  Identities=12%  Similarity=0.232  Sum_probs=22.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |..+.|+|.+||||||+.+.||..+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            6679999999999999999998654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.41  E-value=0.029  Score=51.93  Aligned_cols=60  Identities=18%  Similarity=0.024  Sum_probs=41.8

Q ss_pred             CeEEEEEEecCCCCCCc-ccccchhHH------------------HHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          151 DQLVINLKKQDPELKWP-DIVESWESL------------------TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       151 ~~lvv~L~K~d~~m~Wp-~~~e~We~l------------------~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +..+|-|-|.|---+.. .-.+.|...                  +..+...++|..+.|+|.+|+||||+.+.|+..+
T Consensus       161 ~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          161 VEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             CEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCccHHHHHHHHhccc
Confidence            77889999998511110 002233222                  3456677899999999999999999999998544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.40  E-value=0.015  Score=52.25  Aligned_cols=35  Identities=6%  Similarity=0.073  Sum_probs=28.0

Q ss_pred             HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +..++. ..-.|.++.|+|.+||||||+.+.|+..+
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444 33468899999999999999999999875

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=94.39  E-value=0.033  Score=43.84  Aligned_cols=61  Identities=13%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc---------CC---CccCcHHHHHHHhCCCHHHHH
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL---------GY---TPLSTKELLETFAKQTIDSWM  233 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L---------gY---~fvDTDeLIEq~agkSI~eIF  233 (261)
                      ++.=...+..+++|.++.+++.+|+|||.++..++..+         +.   -.+.+.+|++|...+.+.++.
T Consensus        35 ~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~  107 (216)
T 3b6e_A           35 RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL  107 (216)
T ss_dssp             CHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred             hHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence            77777788888999999999999999999998888754         22   245788898885445555554

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.38  E-value=0.027  Score=48.07  Aligned_cols=29  Identities=14%  Similarity=0.065  Sum_probs=25.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-+|.-+.|+|.+|+||||+++.||..+
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45578889999999999999999988765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.29  E-value=0.025  Score=49.35  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=21.3

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++.|||.+|+||||+.+.|+..+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999766

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=94.29  E-value=0.026  Score=48.73  Aligned_cols=26  Identities=15%  Similarity=0.045  Sum_probs=22.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+++.|+||+||||.+..+|.++
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            46678889999999999999888777

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.25  E-value=0.025  Score=43.59  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=22.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +-.+|.|+|++|+||||+.+.|+..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457999999999999999999863

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.22  E-value=0.035  Score=54.30  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=22.3

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +++|+|++|+|||++++.||+.+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            69999999999999999999998

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.21  E-value=0.027  Score=52.19  Aligned_cols=26  Identities=23%  Similarity=0.158  Sum_probs=22.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+.|+|++||||||+.|.||-.+
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            45668999999999999999999754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.18  E-value=0.051  Score=52.32  Aligned_cols=50  Identities=18%  Similarity=0.182  Sum_probs=37.7

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCC------CccCcHHHHHHHhCCCHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGY------TPLSTKELLETFAKQTIDSWM  233 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY------~fvDTDeLIEq~agkSI~eIF  233 (261)
                      -+|.-+.|+|.+|+||||+.+.||..+--      .....++.+..+.|+.+..+|
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~   78 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF   78 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence            36888999999999999999999986521      122456666777888776665

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.13  E-value=0.038  Score=44.18  Aligned_cols=34  Identities=12%  Similarity=-0.053  Sum_probs=25.8

Q ss_pred             HHHHHHHhhcCCceEEEEecCCCchhHHHHHHHH
Q 024881          175 SLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       175 ~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .+...+.-..+..+|.|+|++|+||||+.+.|..
T Consensus        14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3444443335666899999999999999998864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.13  E-value=0.026  Score=54.98  Aligned_cols=38  Identities=18%  Similarity=0.139  Sum_probs=29.9

Q ss_pred             hhHHHHHHHhhc------------CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          173 WESLTAGSMQLL------------KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       173 We~l~~g~~~lL------------kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +..|...+.++|            +|.-|.|||.+|+||||+.+.||..+
T Consensus       268 ~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          268 YGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             HHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            555655555555            36678999999999999999999876

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.10  E-value=0.027  Score=51.92  Aligned_cols=27  Identities=19%  Similarity=0.053  Sum_probs=23.1

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|.+||||||+.|.||-.+
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            356678999999999999999999654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.09  E-value=0.028  Score=53.17  Aligned_cols=29  Identities=17%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|..+.|+|.+||||||+.|.||..+
T Consensus       134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            34489999999999999999999999875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.07  E-value=0.03  Score=41.53  Aligned_cols=25  Identities=12%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +-.+|.++|..|+||||+...|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3458999999999999999998854

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.06  E-value=0.028  Score=51.83  Aligned_cols=26  Identities=27%  Similarity=0.152  Sum_probs=22.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+.|+|.+||||||+.|.||-.+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            56678999999999999999999654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.06  E-value=0.023  Score=52.16  Aligned_cols=27  Identities=11%  Similarity=-0.031  Sum_probs=23.4

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|.+||||||+.|.||-.+
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            356679999999999999999999654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.05  E-value=0.028  Score=46.91  Aligned_cols=26  Identities=12%  Similarity=0.129  Sum_probs=22.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc---CCC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL---GYT  213 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L---gY~  213 (261)
                      -|.++|.+||||||+...|+..|   ||+
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~   34 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAAVREGWR   34 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhHhcCCe
Confidence            48899999999999999999876   554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.04  E-value=0.028  Score=52.51  Aligned_cols=26  Identities=19%  Similarity=0.084  Sum_probs=23.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+.|+|.+||||||+.|.||-.+
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            56678999999999999999999754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.03  E-value=0.05  Score=53.21  Aligned_cols=28  Identities=21%  Similarity=0.168  Sum_probs=24.9

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|+|.+|+||||+.+.||-.+
T Consensus       114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          114 VKDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3478889999999999999999999765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.03  E-value=0.027  Score=56.18  Aligned_cols=28  Identities=21%  Similarity=0.204  Sum_probs=25.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc---CCCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL---GYTP  214 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L---gY~f  214 (261)
                      .+++|+|.+|+|||++++.||+.+   +.+|
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~  619 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM  619 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcE
Confidence            479999999999999999999998   5554

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.01  E-value=0.029  Score=51.77  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=22.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+.|+|.+||||||+.|.||-.+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            56679999999999999999999754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.01  E-value=0.035  Score=44.09  Aligned_cols=24  Identities=17%  Similarity=0.201  Sum_probs=21.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ..|.|+|++|+||||+.+.|+...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            469999999999999999998754

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=93.99  E-value=0.031  Score=46.44  Aligned_cols=29  Identities=21%  Similarity=0.047  Sum_probs=24.6

Q ss_pred             EEEEecCCCchhHHHHHHHHhc---CCCccCc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L---gY~fvDT  217 (261)
                      |.+-|.-||||||..+.|++.|   |+..+-|
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            6677999999999999999988   7776633

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.98  E-value=0.03  Score=49.24  Aligned_cols=38  Identities=16%  Similarity=0.201  Sum_probs=29.4

Q ss_pred             HHHhhcCCc----eEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          179 GSMQLLKGT----SIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       179 g~~~lLkG~----sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      -+...++|.    .|.+.|++|+|||+.+..||+.++...++
T Consensus        47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             HHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             HHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            344444443    59999999999999999999999765543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.95  E-value=0.03  Score=51.68  Aligned_cols=26  Identities=19%  Similarity=0.058  Sum_probs=22.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+.|+|.+||||||+.|.||-.+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            56679999999999999999999654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=93.93  E-value=0.031  Score=51.81  Aligned_cols=27  Identities=19%  Similarity=0.022  Sum_probs=23.2

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|.+||||||+.|.||-.+
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            356679999999999999999999654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=93.92  E-value=0.032  Score=42.94  Aligned_cols=23  Identities=17%  Similarity=0.161  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..|.|+|++|+||||+.+.|+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999853

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=93.92  E-value=0.031  Score=52.06  Aligned_cols=28  Identities=11%  Similarity=0.003  Sum_probs=23.7

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+||||||+.|.|+-.+
T Consensus        51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           51 VPAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            3456678999999999999999998755

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.88  E-value=0.043  Score=49.97  Aligned_cols=37  Identities=14%  Similarity=0.037  Sum_probs=33.7

Q ss_pred             HHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          175 SLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       175 ~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .++.++..+-+|..+-|+|.+|+||||+.+.||..+.
T Consensus        60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778888888999999999999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.87  E-value=0.029  Score=43.46  Aligned_cols=26  Identities=12%  Similarity=0.238  Sum_probs=22.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ++..+|.++|..|+||||+...|+..
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcC
Confidence            45568999999999999999999865

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.87  E-value=0.035  Score=41.25  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|+.|+||||+...|+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999999865

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=93.86  E-value=0.034  Score=41.48  Aligned_cols=24  Identities=8%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.++|+.|+||||+.+.|...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999999764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.85  E-value=0.035  Score=51.76  Aligned_cols=29  Identities=14%  Similarity=0.140  Sum_probs=24.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|.-+.|+|++||||||+.|.||..+
T Consensus        43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            34457779999999999999999999643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.81  E-value=0.036  Score=43.92  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..|.|+|++|+||||+.+.|+..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            36899999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.80  E-value=0.03  Score=53.43  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|..+.|||.+||||||+.+.|+..+
T Consensus       365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          365 SIPQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34457789999999999999999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.80  E-value=0.032  Score=53.42  Aligned_cols=28  Identities=21%  Similarity=0.179  Sum_probs=24.8

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|..+.|||.+||||||+.+.||-.+
T Consensus        44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           44 VKEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468889999999999999999999765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.76  E-value=0.038  Score=41.25  Aligned_cols=23  Identities=13%  Similarity=0.263  Sum_probs=20.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|..|+||||+...|...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            47999999999999999999864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.76  E-value=0.03  Score=53.46  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=23.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|..+.|||.+||||||+.+.|+..+
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            346679999999999999999998764

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=93.74  E-value=0.016  Score=53.21  Aligned_cols=52  Identities=10%  Similarity=-0.004  Sum_probs=34.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCC-ccCcHHHHHHH---hC-CCHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETF---AK-QTIDSWMLA  235 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~-fvDTDeLIEq~---ag-kSI~eIFae  235 (261)
                      .+|+-|++-|.-|+||||+++.||+.|+.. ++-+.|=...-   .| ..|.++..+
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~trEPg~~w~~~~g~~~Lr~~yld   58 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTT   58 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC----CCEEEECCCHHHHHTTSSSCHHHHHHHH
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCcccccccHHHHHHHHhC
Confidence            467889999999999999999999998643 44444433322   23 667777653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.71  E-value=0.023  Score=52.08  Aligned_cols=27  Identities=15%  Similarity=-0.032  Sum_probs=23.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|.+||||||+.|.||-.+
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            356678999999999999999999654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.70  E-value=0.049  Score=51.16  Aligned_cols=48  Identities=13%  Similarity=0.006  Sum_probs=38.1

Q ss_pred             CCCcccccchh---HHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          164 LKWPDIVESWE---SLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       164 m~Wp~~~e~We---~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ++=.++-+...   .++.++..+-+|..+.|+|.+|+||||+.+.||..+.
T Consensus       132 l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          132 LQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            33334444443   4788888888999999999999999999999999873

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=93.64  E-value=0.04  Score=48.57  Aligned_cols=26  Identities=27%  Similarity=0.213  Sum_probs=23.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|..|.++|.+|+||||+++.||..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999999776

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.62  E-value=0.035  Score=41.33  Aligned_cols=23  Identities=13%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|+.|+||||+...|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999888754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=93.57  E-value=0.018  Score=52.00  Aligned_cols=60  Identities=12%  Similarity=0.109  Sum_probs=40.7

Q ss_pred             cCeEEEEEEecCCCCCCc--ccccchhHHHH-------------H-----HHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          150 EDQLVINLKKQDPELKWP--DIVESWESLTA-------------G-----SMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       150 D~~lvv~L~K~d~~m~Wp--~~~e~We~l~~-------------g-----~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ++..+|-|.|.|--=++.  ..++.|.....             |     +.++++|..+.|+|.+|+||||+.+.|+..
T Consensus       117 ~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          117 DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence            378889999998521111  11344443321             1     256788999999999999999999998743

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.55  E-value=0.043  Score=41.61  Aligned_cols=24  Identities=4%  Similarity=0.088  Sum_probs=21.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +..+|.++|..|+||||+...|..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.47  E-value=0.044  Score=40.91  Aligned_cols=23  Identities=9%  Similarity=0.131  Sum_probs=20.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ..+|.++|..|+||||+...|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999875

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.46  E-value=0.051  Score=44.75  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=27.6

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc--CCCc--cCcH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL--GYTP--LSTK  218 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L--gY~f--vDTD  218 (261)
                      .+..-+.++|..|+||||+...||..|  |++.  +|.|
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D   50 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   50 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            345668999999999999999999876  6553  5544

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=93.44  E-value=0.044  Score=49.28  Aligned_cols=33  Identities=18%  Similarity=0.153  Sum_probs=26.0

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTK  218 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTD  218 (261)
                      |.-|.++|.+|+||||+...||..|   |++  ++|.|
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D  142 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD  142 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4568999999999999999999876   554  44554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.39  E-value=0.059  Score=43.10  Aligned_cols=26  Identities=8%  Similarity=0.083  Sum_probs=23.0

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      -..|.++|..|+||||+...|+..++
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45799999999999999999998863

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.37  E-value=0.038  Score=52.93  Aligned_cols=28  Identities=11%  Similarity=0.082  Sum_probs=25.1

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      -+|.++.++|.+||||||+.+.|+..+.
T Consensus       258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          258 EHKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3688999999999999999999988774

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.33  E-value=0.054  Score=42.03  Aligned_cols=24  Identities=17%  Similarity=0.206  Sum_probs=21.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..+|.++|+.|+||||+...|+..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999999865

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=93.33  E-value=0.72  Score=37.54  Aligned_cols=88  Identities=7%  Similarity=0.110  Sum_probs=68.6

Q ss_pred             CCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCC---ceeeEEecCe
Q 024881           76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPT---ETIWYIDEDQ  152 (261)
Q Consensus        76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~---Et~W~IdD~~  152 (261)
                      .-|+.|+=||+-.-|-|.|-+|.. ..++.++.+.++++-+....+-. -++.     .|..+|--+   ...|-+++..
T Consensus        15 ~iTP~F~itQDdefv~I~I~~p~i-r~~a~~~ei~vd~~~F~F~~~PY-yLRL-----~lP~~vved~~~~A~YD~d~g~   87 (115)
T 3eud_A           15 MITPRFSITQDEEFIFLKIFISNI-RFSAVGLEIIIQENMIIFHLSPY-YLRL-----RFPHELIDDERSTAQYDSKDEC   87 (115)
T ss_dssp             CBCCCEEEEECSSEEEEEEECCSC-CCCSSSCEEEEETTEEEEEETTE-EEEE-----ECSSCEECSTTCEEEEETTTTE
T ss_pred             EeCCcEEEEECCCEEEEEEEcCce-ecccCccEEEEeCCEEEEecCCe-EEEE-----ecCcceecCCCcceEEeCCCcE
Confidence            457789999999999999999983 33588999999999999988766 2332     244444333   3488888999


Q ss_pred             EEEEEEecCCCCCCcccc
Q 024881          153 LVINLKKQDPELKWPDIV  170 (261)
Q Consensus       153 lvv~L~K~d~~m~Wp~~~  170 (261)
                      +.|.|.|.++--..||+.
T Consensus        88 ~~v~lpK~~~GE~F~dLD  105 (115)
T 3eud_A           88 INVKVAKLNKNEYFEDLD  105 (115)
T ss_dssp             EEEEEEESSTTCCCCCTT
T ss_pred             EEEEEcCCcCCCcCCCcc
Confidence            999999999977777764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=93.31  E-value=0.05  Score=40.63  Aligned_cols=25  Identities=12%  Similarity=0.252  Sum_probs=21.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +-.+|.++|+.|+||||+.+.|...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3468999999999999999999765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.31  E-value=0.046  Score=41.20  Aligned_cols=25  Identities=8%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ++-.+|.++|..|+||||+...|..
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHc
Confidence            4456899999999999999999874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.28  E-value=0.055  Score=40.82  Aligned_cols=24  Identities=8%  Similarity=0.213  Sum_probs=21.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.++|..|+||||+...|...
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            458999999999999999999865

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.28  E-value=0.055  Score=40.40  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .+|.++|..|+||||+...|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            4799999999999999998874

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=93.26  E-value=0.059  Score=43.11  Aligned_cols=44  Identities=9%  Similarity=-0.011  Sum_probs=21.2

Q ss_pred             CCcccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHH
Q 024881          165 KWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       165 ~Wp~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .||.=.++|-.-........+..+|.++|+.|+||||+...|..
T Consensus         9 ~~~~~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A            9 HHSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             ---------------------CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cccCCcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHh
Confidence            45444444444444444455677899999999999999988875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=93.25  E-value=0.045  Score=48.31  Aligned_cols=21  Identities=10%  Similarity=-0.010  Sum_probs=19.2

Q ss_pred             EEEEecCCCchhHHHHHHHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +.|+|++||||||+.+.|+..
T Consensus         7 ~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            7 TLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEecCCCCHHHHHHHHHhh
Confidence            679999999999999999964

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=93.24  E-value=0.05  Score=49.76  Aligned_cols=27  Identities=7%  Similarity=0.058  Sum_probs=23.5

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|-.|.++|.+||||||+.+.|+..+
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            345589999999999999999998876

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.23  E-value=0.047  Score=45.10  Aligned_cols=23  Identities=13%  Similarity=0.001  Sum_probs=20.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+.++|.+|+||||+.+.|+..|
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhc
Confidence            48899999999999999998864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.22  E-value=0.041  Score=43.05  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ..|.|||++|+||||+.+.|+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3699999999999999999986

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=93.19  E-value=0.035  Score=51.60  Aligned_cols=36  Identities=11%  Similarity=0.135  Sum_probs=30.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcCCC--ccCc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLST  217 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~--fvDT  217 (261)
                      .+.+|..+.|.|++|+|||+++..+|...|++  |+++
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            34567778999999999999999999887766  7777

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.18  E-value=0.039  Score=53.08  Aligned_cols=27  Identities=19%  Similarity=0.122  Sum_probs=23.1

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|..+.|||.+||||||+.+.|+..+
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            356679999999999999999998654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=93.16  E-value=0.06  Score=40.37  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=21.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +..+|.++|..|+||||+...|..
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999865

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=93.16  E-value=0.73  Score=42.19  Aligned_cols=83  Identities=22%  Similarity=0.272  Sum_probs=65.3

Q ss_pred             CCCCCceEEcccCc-eEEEEEecCCcccccccceEEEeeCCEEEEEEccC---------CcceeeeecccccCCCCCCce
Q 024881           75 PANTSQYEFSDGSA-EIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS---------GSFITLIETNQLFDKIKPTET  144 (261)
Q Consensus        75 ~~~t~~Y~wTqtl~-EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~---------~~~~tlId~g~L~~kIk~~Et  144 (261)
                      ....+-|+=.+..+ ++.|.+.||+   .+..||.|+++++.|+|.-++.         +.+..-+   .|.+.|.++.-
T Consensus        98 ~p~vDi~E~~~dgk~~~~v~~dlPG---~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~---~LP~~Vd~e~i  171 (314)
T 2bol_A           98 DFLKDAYEVGKDGRLHFKVYFNVKN---FKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSI---PLPPSVDRNHI  171 (314)
T ss_dssp             GGGGGCEEECTTSSEEEEEEEECTT---CCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEE---ECCTTBCGGGC
T ss_pred             CCccceEEcCCCCceEEEEEEECCC---CchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEE---ECCCCcccccc
Confidence            34556676544444 8999999998   6788999999999999988765         2443333   48889999988


Q ss_pred             eeEEe-cCeEEEEEEecCCC
Q 024881          145 IWYID-EDQLVINLKKQDPE  163 (261)
Q Consensus       145 ~W~Id-D~~lvv~L~K~d~~  163 (261)
                      .=.++ |..|.|.|.|..++
T Consensus       172 ~A~~~~nGVL~I~lPK~~~~  191 (314)
T 2bol_A          172 QATITTDDVLVIEAPVNEPN  191 (314)
T ss_dssp             EEEECSSSEEEEEEEBSSCC
T ss_pred             EEEEeCCCEEEEEEeccCcc
Confidence            88899 99999999998763

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=93.09  E-value=0.056  Score=40.51  Aligned_cols=23  Identities=13%  Similarity=0.248  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|+.|+||||+...|...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            47999999999999999998854

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.09  E-value=0.057  Score=40.70  Aligned_cols=24  Identities=8%  Similarity=0.055  Sum_probs=21.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+|.++|+.|+||||+...|...-
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            479999999999999999998643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=93.04  E-value=0.052  Score=41.29  Aligned_cols=25  Identities=12%  Similarity=0.206  Sum_probs=21.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +..+|.++|..|+||||+...|...
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            4568999999999999999988753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=92.96  E-value=0.067  Score=40.68  Aligned_cols=24  Identities=21%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..+|.++|..|+||||+...|...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999999875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.95  E-value=0.062  Score=40.39  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=19.1

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +|.++|+.|+||||+...|..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999999863

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.94  E-value=0.072  Score=39.82  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +|.++|+.|+||||+...|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6999999999999999999754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.92  E-value=0.097  Score=39.94  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      +..+|.++|+.|+||||+...|.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            35689999999999999998886

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.92  E-value=0.063  Score=39.96  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .+|.++|..|+||||+...|..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999999885

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.92  E-value=0.065  Score=40.59  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.++|+.|+||||+...|...
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            357999999999999999998753

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=92.90  E-value=0.11  Score=47.74  Aligned_cols=52  Identities=10%  Similarity=0.114  Sum_probs=30.2

Q ss_pred             EecCCCCCCcccccchhHHHHHHH-hhcCCc-eEEEEecCCCchhHHHHHHHHhc
Q 024881          158 KKQDPELKWPDIVESWESLTAGSM-QLLKGT-SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~We~l~~g~~-~lLkG~-sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .|+.+ |...++-+.=...+..+. .+-.+. +++|.|..|+|||++...++..|
T Consensus        16 ~~~~p-~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           16 PRGSH-MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             ------CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccCC-CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45556 555554422222222222 222233 89999999999999999999877

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.89  E-value=0.059  Score=40.89  Aligned_cols=27  Identities=15%  Similarity=0.217  Sum_probs=21.9

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -++-.+|.++|..|+||||+...|...
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhC
Confidence            344568999999999999999998854

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.88  E-value=0.065  Score=40.14  Aligned_cols=21  Identities=14%  Similarity=0.191  Sum_probs=18.9

Q ss_pred             ceEEEEecCCCchhHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      .+|.|+|+.|+||||+.+.|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            479999999999999998885

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.87  E-value=0.063  Score=40.63  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|..|+||||+...|...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999998753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=92.86  E-value=0.088  Score=49.31  Aligned_cols=28  Identities=11%  Similarity=0.006  Sum_probs=24.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcC
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      -+|-.|.++|.+||||||+.+.|+..+.
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            4677799999999999999999998875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.86  E-value=0.063  Score=40.85  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .+|.|+|..|+||||+...|..
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999985

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=92.85  E-value=0.088  Score=43.88  Aligned_cols=53  Identities=17%  Similarity=0.149  Sum_probs=40.9

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC---ccCcHHHHHHHh
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFA  225 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~---fvDTDeLIEq~a  225 (261)
                      .+.=.+.+..+++|.++.+++++|+|||.++...+...|..   .+.+.+|++|..
T Consensus        18 ~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~   73 (337)
T 2z0m_A           18 TEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVA   73 (337)
T ss_dssp             CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHH
Confidence            34444566778889999999999999999988877776654   346788888765

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.82  E-value=0.066  Score=40.31  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=19.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .+|.++|+.|+||||+.+.|..
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCccHHHHHHHHhc
Confidence            4799999999999999998864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.81  E-value=0.064  Score=48.15  Aligned_cols=35  Identities=14%  Similarity=0.028  Sum_probs=27.1

Q ss_pred             HHHHHH-hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          176 LTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       176 l~~g~~-~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +..++. +.-+|..+.|+|.+|+||||+.+.|+..+
T Consensus        44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            444443 33467789999999999999999998654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.79  E-value=0.066  Score=40.43  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|..|+||||+...|...
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999888754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=92.76  E-value=0.068  Score=50.24  Aligned_cols=22  Identities=9%  Similarity=0.048  Sum_probs=20.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+.|+|.+|+||||+.+.|+..
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            8999999999999999999973

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=92.67  E-value=0.12  Score=40.77  Aligned_cols=52  Identities=17%  Similarity=0.048  Sum_probs=36.9

Q ss_pred             hHHHHHHHhhcCCceEEEEecCCCchhHHHHH-HHHhcC-----------CCccCcHHHHHHHh
Q 024881          174 ESLTAGSMQLLKGTSIFLVGDSTEVNEKVALE-LAVGLG-----------YTPLSTKELLETFA  225 (261)
Q Consensus       174 e~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~-LA~~Lg-----------Y~fvDTDeLIEq~a  225 (261)
                      +.=...+..+++|.++.+++.+|+|||.++-. +.+.+.           .-.+.+.+|.+|..
T Consensus        26 ~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~   89 (207)
T 2gxq_A           26 PIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVA   89 (207)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHH
Confidence            33445566788899999999999999988544 334441           12457888888765

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=92.67  E-value=0.06  Score=48.54  Aligned_cols=26  Identities=19%  Similarity=0.132  Sum_probs=23.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+-|+|.+|+||||+++.||..+
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            66779999999999999999999876

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.66  E-value=0.075  Score=42.29  Aligned_cols=25  Identities=16%  Similarity=0.170  Sum_probs=22.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -.+|.|+|+.|+||||+...|+...
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4579999999999999999998765

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=92.65  E-value=0.51  Score=39.65  Aligned_cols=78  Identities=14%  Similarity=0.219  Sum_probs=58.1

Q ss_pred             EEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCc-----ce--eeeecccccCCCCCCceeeEE-ecCeE
Q 024881           82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS-----FI--TLIETNQLFDKIKPTETIWYI-DEDQL  153 (261)
Q Consensus        82 ~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~-----~~--tlId~g~L~~kIk~~Et~W~I-dD~~l  153 (261)
                      ...++..++.|.+.||+   .+..||.|+++++.|.|.-++...     ..  ..--.=.|.+.|.++.-.=.+ +|..|
T Consensus        67 dv~e~~d~~~v~~dlPG---~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL  143 (175)
T 2klr_A           67 EMRLEKDRFSVNLDVKH---FSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVL  143 (175)
T ss_dssp             --CCCCSEEEEEECCSS---CCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCE
T ss_pred             EEEEcCCeEEEEEECCC---CChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEE
Confidence            56678899999999998   677899999999999998865421     00  001112478889998888889 79999


Q ss_pred             EEEEEecCC
Q 024881          154 VINLKKQDP  162 (261)
Q Consensus       154 vv~L~K~d~  162 (261)
                      .|.+.|...
T Consensus       144 ~I~lPK~~~  152 (175)
T 2klr_A          144 TVNGPRKQV  152 (175)
T ss_dssp             EEEEECC--
T ss_pred             EEEEECCCC
Confidence            999999765

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=92.63  E-value=0.099  Score=47.02  Aligned_cols=53  Identities=15%  Similarity=0.062  Sum_probs=44.2

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCc---cCcHHHHHHHh
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTP---LSTKELLETFA  225 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~f---vDTDeLIEq~a  225 (261)
                      ++.=..++..++++.++.|++++|+|||.++-.++..+|.+.   +-+.+|++|..
T Consensus        95 ~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~  150 (472)
T 2fwr_A           95 RDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWK  150 (472)
T ss_dssp             CHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHH
Confidence            677778888899999999999999999999999998886543   45677877755

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.62  E-value=0.071  Score=40.64  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|..|+||||+...|...
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999999854

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.61  E-value=0.077  Score=40.61  Aligned_cols=24  Identities=8%  Similarity=-0.079  Sum_probs=20.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+|.|+|+.|+||||+.+.|....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            479999999999999998887543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.60  E-value=0.075  Score=41.12  Aligned_cols=24  Identities=21%  Similarity=0.045  Sum_probs=21.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.++|..|+||||+...|...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999988754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.59  E-value=0.071  Score=42.14  Aligned_cols=26  Identities=12%  Similarity=0.229  Sum_probs=22.1

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+..+|.|+|..|+||||+...|...
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            45568999999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.58  E-value=0.064  Score=51.36  Aligned_cols=27  Identities=26%  Similarity=0.067  Sum_probs=24.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|.+|+||||+.+.|+..+
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            468889999999999999999999754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.56  E-value=0.079  Score=40.54  Aligned_cols=23  Identities=4%  Similarity=0.118  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|+.|+||||+...|...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=92.55  E-value=0.044  Score=41.86  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +-.+|.++|+.|+||||+...|...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4457999999999999999999864

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=92.55  E-value=0.16  Score=40.09  Aligned_cols=53  Identities=15%  Similarity=0.024  Sum_probs=37.5

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHH-HhcCC--------CccCcHHHHHHHh
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELA-VGLGY--------TPLSTKELLETFA  225 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA-~~LgY--------~fvDTDeLIEq~a  225 (261)
                      ++.=.+.+..+++|.++.+++.+|+|||.+....+ ..+..        -.+.+.+|.+|..
T Consensus        27 ~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~   88 (206)
T 1vec_A           27 SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS   88 (206)
T ss_dssp             CHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHH
T ss_pred             CHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHH
Confidence            34445566677889999999999999998766443 33321        2456788888765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=92.55  E-value=0.061  Score=47.37  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=19.0

Q ss_pred             hhcCCc--eEEEEecCCCchhHHHHHHHH
Q 024881          182 QLLKGT--SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       182 ~lLkG~--sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ..++|.  +|.|||.+|+||||+-+.|+.
T Consensus        12 ~~l~~~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           12 SVKKGFEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEcCCCEEEEEECCCCCCHHHHHHHHhC
Confidence            356666  489999999999999999874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=92.54  E-value=0.082  Score=40.48  Aligned_cols=22  Identities=18%  Similarity=0.231  Sum_probs=20.1

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +|.++|+.|+||||+...|...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            6999999999999999998864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=92.48  E-value=0.071  Score=43.93  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=20.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      -.+|.|||.+|+||||+...|..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHcC
Confidence            35799999999999999998874

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.45  E-value=0.097  Score=40.48  Aligned_cols=24  Identities=8%  Similarity=0.170  Sum_probs=21.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +..+|.++|..|+||||+...|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            446899999999999999999976

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=92.43  E-value=0.075  Score=40.73  Aligned_cols=23  Identities=17%  Similarity=0.094  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.|+|..|+||||+...|...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            37999999999999999988765

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=92.40  E-value=0.11  Score=42.99  Aligned_cols=34  Identities=3%  Similarity=-0.056  Sum_probs=25.9

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHH
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALEL  206 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~L  206 (261)
                      |+.--+.+..+++|.++.++|.+||||||....+
T Consensus        63 ~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~   96 (235)
T 3llm_A           63 KKFESEILEAISQNSVVIIRGATGCGKTTQVPQF   96 (235)
T ss_dssp             GGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHH
Confidence            4444455566778999999999999999866544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.38  E-value=0.08  Score=40.17  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=20.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.++|..|+||||+...|...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            357999999999999999998754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=92.36  E-value=0.036  Score=53.00  Aligned_cols=27  Identities=19%  Similarity=0.094  Sum_probs=22.6

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|..+.|||.+||||||+.+.|+..+
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            346679999999999999999887654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=92.33  E-value=0.081  Score=41.00  Aligned_cols=27  Identities=7%  Similarity=0.176  Sum_probs=21.5

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..+..+|.++|..|+||||+...|...
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999999753

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=92.29  E-value=0.32  Score=39.03  Aligned_cols=53  Identities=11%  Similarity=0.103  Sum_probs=37.1

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHH-HHHHHHhcCC--------CccCcHHHHHHHh
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKV-ALELAVGLGY--------TPLSTKELLETFA  225 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTV-Gr~LA~~LgY--------~fvDTDeLIEq~a  225 (261)
                      ++.=.+.+..+++|.++.+++.+|+|||.+ .-.+.+.+..        -.+.+.+|.+|..
T Consensus        38 ~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~   99 (224)
T 1qde_A           38 SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQ   99 (224)
T ss_dssp             CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred             cHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHH
Confidence            344445566788999999999999999988 3444444421        2456788887765

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=92.25  E-value=0.082  Score=47.24  Aligned_cols=28  Identities=7%  Similarity=-0.103  Sum_probs=24.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ...+.|++++|.+|+||||..+.|+..+
T Consensus        32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           32 DRTNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             TBCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            4567799999999999999999888653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.24  E-value=0.081  Score=39.90  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .+|.++|+.|+||||+...|..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999988864

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=92.19  E-value=0.044  Score=48.75  Aligned_cols=27  Identities=19%  Similarity=0.179  Sum_probs=24.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      .| -+.|||.+|+||||+-+.|+-.+|.
T Consensus        60 ~G-~~~lvG~NGaGKStLl~aI~~l~~~   86 (415)
T 4aby_A           60 GG-FCAFTGETGAGKSIIVDALGLLLGG   86 (415)
T ss_dssp             SS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            56 6899999999999999999988874

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.17  E-value=0.087  Score=40.01  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.++|..|+||||+...|...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999888754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.15  E-value=0.094  Score=40.73  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|+.|+||||+.+.|+..
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.14  E-value=0.088  Score=40.32  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+-.+|.++|+.|+||||+...|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34568999999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.14  E-value=0.047  Score=52.50  Aligned_cols=27  Identities=7%  Similarity=0.128  Sum_probs=22.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|..+.|||.+||||||+.+.|+..+
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            346679999999999999999987654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.13  E-value=0.07  Score=52.33  Aligned_cols=50  Identities=16%  Similarity=0.149  Sum_probs=33.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCC--Ccc----CcHHHHHHHhCCCHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGY--TPL----STKELLETFAKQTIDSWM  233 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY--~fv----DTDeLIEq~agkSI~eIF  233 (261)
                      -+|.-+.|+|.+|+||||+.+.||..+--  .-+    +.++.+....|..+...|
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~  156 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYF  156 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHH
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhh
Confidence            36889999999999999999999986621  112    223444445555555444

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.09  E-value=0.098  Score=39.98  Aligned_cols=22  Identities=9%  Similarity=0.218  Sum_probs=19.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .+|.|+|+.|+||||+...|..
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            4799999999999999998874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.09  E-value=0.068  Score=51.48  Aligned_cols=28  Identities=18%  Similarity=0.084  Sum_probs=24.6

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+|+||||+.+.||..+
T Consensus       291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          291 AKEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478889999999999999999999754

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=92.08  E-value=0.13  Score=44.32  Aligned_cols=50  Identities=12%  Similarity=0.076  Sum_probs=36.2

Q ss_pred             HHHHHHhhcCCceEEEEecCCCchhHHHHHHH-HhcC--------CCccCcHHHHHHHh
Q 024881          176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELA-VGLG--------YTPLSTKELLETFA  225 (261)
Q Consensus       176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA-~~Lg--------Y~fvDTDeLIEq~a  225 (261)
                      =.+.+..+++|.++.+++.+|+|||.+....+ +.+.        .-.+.+.+|.+|..
T Consensus        67 Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~  125 (414)
T 3eiq_A           67 QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQ  125 (414)
T ss_dssp             HHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred             HHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHH
Confidence            34566788999999999999999999854433 3332        22457788888765

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=92.05  E-value=0.091  Score=46.62  Aligned_cols=33  Identities=24%  Similarity=0.212  Sum_probs=27.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTK  218 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTD  218 (261)
                      |..|.++|..|+||||+...||..+   |++  ++|.|
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            5568999999999999999999777   554  45666

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=92.05  E-value=0.13  Score=47.65  Aligned_cols=35  Identities=17%  Similarity=0.033  Sum_probs=27.5

Q ss_pred             hHHHHHHHhhcC-----CceEEEEecCCCchhHHHHHHHH
Q 024881          174 ESLTAGSMQLLK-----GTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       174 e~l~~g~~~lLk-----G~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +...+-+.+.|.     +.-|.|+||.|.||||+++.++.
T Consensus       130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            555666666664     34599999999999999999975

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.05  E-value=0.099  Score=46.58  Aligned_cols=27  Identities=7%  Similarity=-0.038  Sum_probs=23.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|..|.|+|.+|+||||+...||..+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999998765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.03  E-value=0.1  Score=40.50  Aligned_cols=24  Identities=8%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +..+|.++|..|+||||+...|..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            356799999999999999999984

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.99  E-value=0.083  Score=51.68  Aligned_cols=28  Identities=25%  Similarity=0.096  Sum_probs=24.6

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +-+|.-+.|+|.+|+||||+.+.||..+
T Consensus       379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468889999999999999999999754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=91.98  E-value=0.074  Score=50.41  Aligned_cols=33  Identities=27%  Similarity=0.243  Sum_probs=26.9

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc---CCCc--cCcH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTK  218 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTD  218 (261)
                      |..|.++|..|+||||+...||..|   |++.  +|+|
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            5679999999999999999999766   6554  5655

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.91  E-value=0.095  Score=40.93  Aligned_cols=24  Identities=13%  Similarity=0.109  Sum_probs=21.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.++|+.|+||||+...|...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.90  E-value=0.096  Score=40.74  Aligned_cols=25  Identities=12%  Similarity=0.209  Sum_probs=21.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +-.+|.++|..|+||||+...|...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3458999999999999999888754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.85  E-value=0.1  Score=40.56  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.|+|..|+||||+...|...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            47999999999999999998763

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=91.84  E-value=0.17  Score=45.39  Aligned_cols=36  Identities=17%  Similarity=0.177  Sum_probs=29.9

Q ss_pred             HHHHHHHhhcCCc-----eEEEEecCCCchhHHHHHHHHhc
Q 024881          175 SLTAGSMQLLKGT-----SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       175 ~l~~g~~~lLkG~-----sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+..-+...|+|.     .|.|.|++|+|||..++.||..+
T Consensus        88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            4445577777776     49999999999999999999975

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.83  E-value=0.11  Score=40.80  Aligned_cols=25  Identities=4%  Similarity=0.106  Sum_probs=22.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +..+|.++|+.|+||||+...|...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999999864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=91.81  E-value=0.15  Score=46.26  Aligned_cols=34  Identities=9%  Similarity=0.148  Sum_probs=28.5

Q ss_pred             HHHHHHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      |..-+.+.+++.+|++||.+|+||||+...|...
T Consensus       152 L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          152 VMEAINRYREGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             HHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4445556668999999999999999999999876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=91.73  E-value=0.11  Score=46.42  Aligned_cols=32  Identities=16%  Similarity=0.130  Sum_probs=25.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc---CCC--ccCcH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTK  218 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTD  218 (261)
                      ..|.|+|..|+||||+...||..|   |++  .+|.|
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            469999999999999999999886   554  34444

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.72  E-value=0.087  Score=41.20  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=21.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..+|.++|+.|+||||+...|...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            457999999999999999999753

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=91.71  E-value=0.084  Score=44.62  Aligned_cols=28  Identities=18%  Similarity=0.172  Sum_probs=23.8

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCC--ccCc
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYT--PLST  217 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~--fvDT  217 (261)
                      |+++|..|||||+.|..||.. |.+  |++|
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT   31 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence            789999999999999999987 753  5555

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=91.71  E-value=0.1  Score=41.15  Aligned_cols=25  Identities=24%  Similarity=0.326  Sum_probs=21.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +..+|.++|+.|+||||+...|...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3468999999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.71  E-value=0.13  Score=40.22  Aligned_cols=23  Identities=13%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.|+|+.|+||||+...|...
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcC
Confidence            47999999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.69  E-value=0.088  Score=41.10  Aligned_cols=28  Identities=25%  Similarity=0.283  Sum_probs=22.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +.-+..+|.|+|+.|+||||+...|...
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            3445568999999999999999999865

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.69  E-value=0.11  Score=48.91  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.4

Q ss_pred             hcCCceEEEEecCCCchhHHHHHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALEL  206 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~L  206 (261)
                      +-+|..+.|+|.+||||||+++.+
T Consensus        36 i~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           36 LPIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCCCHHHHHHHH
Confidence            457888999999999999999994

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.69  E-value=0.083  Score=40.60  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=22.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ++-.+|.|+|+.|+||||+...|...
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcC
Confidence            44568999999999999999999764

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=91.66  E-value=0.14  Score=43.98  Aligned_cols=54  Identities=15%  Similarity=-0.031  Sum_probs=42.4

Q ss_pred             cchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc----CCC---ccCcHHHHHHHh
Q 024881          171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL----GYT---PLSTKELLETFA  225 (261)
Q Consensus       171 e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L----gY~---fvDTDeLIEq~a  225 (261)
                      +-++.=..++..+++| ++.|.++||+|||.++-.++..+    +-+   .+.+.+|++|..
T Consensus         9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~   69 (494)
T 1wp9_A            9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHA   69 (494)
T ss_dssp             CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHH
T ss_pred             CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence            4477778888999999 99999999999999998887665    322   345667877765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.65  E-value=0.11  Score=41.08  Aligned_cols=26  Identities=12%  Similarity=0.112  Sum_probs=21.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+-.+|.|+|+.|+||||+...|...
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            34457999999999999999887764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=91.59  E-value=0.12  Score=40.34  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..+|.++|+.|+||||+.+.|...
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.59  E-value=0.1  Score=41.02  Aligned_cols=25  Identities=4%  Similarity=0.142  Sum_probs=21.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +..+|.|+|+.|+||||+...|...
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            4468999999999999999888754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.57  E-value=0.11  Score=39.92  Aligned_cols=25  Identities=4%  Similarity=0.129  Sum_probs=21.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +..+|.++|..|+||||+...|...
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999998753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.56  E-value=0.12  Score=40.58  Aligned_cols=24  Identities=13%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.++|+.|+||||+...|...
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            458999999999999999999754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=91.53  E-value=0.18  Score=45.80  Aligned_cols=34  Identities=12%  Similarity=0.140  Sum_probs=27.9

Q ss_pred             HHHHHHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          176 LTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       176 l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      |..-+.+.++|.+|++||.+|+||||+...|...
T Consensus       150 L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          150 LADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             HHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             HHhhhhhhcccceEEEecCCCCChhHHHHHHHhh
Confidence            3444555568899999999999999999999876

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.50  E-value=0.12  Score=40.46  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=20.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHh
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -+..+|.++|+.|+||||+...|...
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            45668999999999999999888743

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=91.49  E-value=0.29  Score=39.22  Aligned_cols=52  Identities=15%  Similarity=0.042  Sum_probs=38.2

Q ss_pred             hHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc------CCC---ccCcHHHHHHHh
Q 024881          174 ESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL------GYT---PLSTKELLETFA  225 (261)
Q Consensus       174 e~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L------gY~---fvDTDeLIEq~a  225 (261)
                      +.=.+.+..+++|.++.+++.+|+|||.++...+...      +.+   .+.+.+|.+|..
T Consensus        39 ~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~   99 (220)
T 1t6n_A           39 EVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS   99 (220)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHH
Confidence            3444556677889999999999999999887766554      111   347888888764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.49  E-value=0.11  Score=39.99  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|+.|+||||+...|...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            47999999999999999998853

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.46  E-value=0.11  Score=40.28  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=20.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +-.+|.|+|+.|+||||+...|..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            345899999999999999998874

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=91.45  E-value=0.12  Score=40.68  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.|+|..|+||||+...|...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999998753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.39  E-value=0.13  Score=40.31  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=20.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +..+|.++|..|+||||+...|..
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            356899999999999999998874

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=91.35  E-value=0.13  Score=42.69  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=21.2

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ..+-.+|.|+|..|+||||+...|..
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhC
Confidence            34456899999999999999998864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.32  E-value=0.12  Score=40.15  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.|+|..|+||||+...|...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999998754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.29  E-value=0.12  Score=40.91  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=20.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +-.+|.++|+.|+||||+...|...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457999999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.23  E-value=0.13  Score=48.33  Aligned_cols=29  Identities=10%  Similarity=0.143  Sum_probs=24.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-+|..+.|+|.+|+||||+++.+|..+
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45577789999999999999999998654

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=91.21  E-value=0.094  Score=48.03  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=28.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      ..|+-|.|.|.+|+||||++.+|.+ -|++++.-|.
T Consensus       145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~  179 (312)
T 1knx_A          145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDA  179 (312)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCE
Confidence            3566799999999999999999876 5888876553

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=91.14  E-value=0.14  Score=40.45  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +..+|.++|+.|+||||+...|..
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            456899999999999999998853

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=91.14  E-value=0.11  Score=41.17  Aligned_cols=25  Identities=16%  Similarity=0.053  Sum_probs=21.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +-.+|.++|+.|+||||+...|...
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4468999999999999999998854

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=91.13  E-value=0.16  Score=49.09  Aligned_cols=38  Identities=16%  Similarity=-0.008  Sum_probs=29.8

Q ss_pred             HHHHhhcCCceEEEEecCCCchhHHHHHHHHhc---CCCcc
Q 024881          178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL---GYTPL  215 (261)
Q Consensus       178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv  215 (261)
                      ..+...+++..+++.|.+|+||||+.+.|+..+   |++.+
T Consensus       196 ~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl  236 (574)
T 3e1s_A          196 SVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVG  236 (574)
T ss_dssp             HHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            345566778889999999999999999988754   55443

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=91.12  E-value=0.32  Score=41.62  Aligned_cols=53  Identities=15%  Similarity=0.021  Sum_probs=38.6

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc------CCC---ccCcHHHHHHHh
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL------GYT---PLSTKELLETFA  225 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L------gY~---fvDTDeLIEq~a  225 (261)
                      ++.=...+..+++|.++.+++++|+|||.++-..+...      +.+   .+.+.+|.+|..
T Consensus        32 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~   93 (391)
T 1xti_A           32 SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS   93 (391)
T ss_dssp             CHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHH
Confidence            44445667778889999999999999999876555443      212   347788888764

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=91.10  E-value=0.096  Score=46.41  Aligned_cols=28  Identities=18%  Similarity=0.402  Sum_probs=22.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      .|.+ .|+|++|+||||+...+.-.|.++
T Consensus        23 ~~~~-~i~G~NGsGKS~lleAi~~~l~~~   50 (339)
T 3qkt_A           23 EGIN-LIIGQNGSGKSSLLDAILVGLYWP   50 (339)
T ss_dssp             SEEE-EEECCTTSSHHHHHHHHHHHHHCS
T ss_pred             CCeE-EEECCCCCCHHHHHHHHHHHhcCC
Confidence            3555 599999999999999987777553

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=91.07  E-value=0.23  Score=41.57  Aligned_cols=23  Identities=17%  Similarity=0.169  Sum_probs=20.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..|.+||.+|+||||+...|...
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCC
Confidence            46999999999999999988743

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.98  E-value=0.12  Score=49.16  Aligned_cols=28  Identities=18%  Similarity=0.167  Sum_probs=23.3

Q ss_pred             hhcCCce--EEEEecCCCchhHHHHHHHHh
Q 024881          182 QLLKGTS--IFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       182 ~lLkG~s--IyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+-+|..  +.|||.+|+||||+.+.|+..
T Consensus        36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            4457777  999999999999999999865

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=90.97  E-value=0.13  Score=40.13  Aligned_cols=23  Identities=13%  Similarity=0.200  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|+.|+||||+...|...
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            47999999999999999988753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.91  E-value=0.093  Score=49.23  Aligned_cols=29  Identities=17%  Similarity=0.218  Sum_probs=23.9

Q ss_pred             hhcCCce--EEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTS--IFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~s--IyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ..++|.+  |.|||.+|+||||+.+.|+...
T Consensus        25 ~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           25 SVKRGFEFTLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             TCC-CCCEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEecCCCEEEEEECCCCCcHHHHHHHHhCCC
Confidence            4678874  8999999999999999998654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=90.90  E-value=0.14  Score=48.44  Aligned_cols=26  Identities=27%  Similarity=0.213  Sum_probs=23.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|..|.++|..|+||||+...||..|
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46679999999999999999999876

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.89  E-value=0.15  Score=39.59  Aligned_cols=23  Identities=17%  Similarity=0.175  Sum_probs=21.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|+.|+||||+...|...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999865

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.89  E-value=0.15  Score=41.28  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.|+|+.|+||||+.+.|...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            47999999999999999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=90.85  E-value=0.14  Score=40.06  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.|+|..|+||||+...|...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999988753

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=90.81  E-value=0.13  Score=40.81  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |. ..++|++|+||||+-..|.-.|
T Consensus        24 g~-~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GI-NLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EE-EEEECCTTSSHHHHHHHHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence            44 4789999999999999998777

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=90.78  E-value=0.13  Score=50.54  Aligned_cols=26  Identities=15%  Similarity=0.213  Sum_probs=22.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+.|+|.+|+||||+.+.||-.+
T Consensus       377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          377 DSEILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             TTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCC
Confidence            35668999999999999999999754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=90.75  E-value=0.13  Score=40.02  Aligned_cols=26  Identities=12%  Similarity=0.112  Sum_probs=21.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +..+|.++|..|+||||+...|...-
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999998887554

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.75  E-value=0.17  Score=40.27  Aligned_cols=24  Identities=13%  Similarity=0.199  Sum_probs=21.0

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.++|..|+||||+...|...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            357999999999999999998763

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=90.63  E-value=0.28  Score=46.09  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .-|.++||-|.||||+|+.++.
T Consensus       153 ~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          153 FFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999999995

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=90.62  E-value=0.13  Score=39.74  Aligned_cols=23  Identities=9%  Similarity=0.250  Sum_probs=20.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      +..+|.++|+.|+||||+...|.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999988874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.55  E-value=0.093  Score=40.18  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=10.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .+|.|+|+.|+||||+...|..
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999888864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.52  E-value=0.15  Score=40.12  Aligned_cols=22  Identities=5%  Similarity=0.134  Sum_probs=19.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .+|.++|..|+||||+...|..
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999988863

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=90.51  E-value=0.15  Score=48.60  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=26.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc---CCCc--cCcH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTK  218 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTD  218 (261)
                      +.-|.++|..|+||||+...||..|   |++.  +|+|
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D  137 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD  137 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4569999999999999999999766   6654  4544

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=90.51  E-value=0.17  Score=44.16  Aligned_cols=26  Identities=8%  Similarity=-0.015  Sum_probs=21.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.=.++.|.||+||||.+..+|.+.
T Consensus        27 ~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           27 NGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             SCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            46556789999999999999888776

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=90.47  E-value=0.14  Score=46.44  Aligned_cols=53  Identities=13%  Similarity=-0.084  Sum_probs=38.5

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc---CC----CccCcHHHHHHHh
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL---GY----TPLSTKELLETFA  225 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L---gY----~fvDTDeLIEq~a  225 (261)
                      .+.=..++..+++|.++.|+|++|+|||.++-.+|..+   +.    -.+.+.+|.+|..
T Consensus       115 ~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~  174 (510)
T 2oca_A          115 HWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMA  174 (510)
T ss_dssp             CHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHH
Confidence            44455667777788999999999999999997777652   21    2345667777665

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=90.46  E-value=0.18  Score=40.75  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..+|.++|+.|+||||+.+.|+..
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            357999999999999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=90.42  E-value=0.14  Score=47.99  Aligned_cols=24  Identities=29%  Similarity=0.253  Sum_probs=21.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ..|.++|..|+||||++..||..+
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            369999999999999999999876

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.42  E-value=0.19  Score=39.81  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|..|+||||+...|...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999999863

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=90.42  E-value=0.17  Score=40.25  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.|+|+.|+||||+...|...
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhhC
Confidence            47999999999999999988753

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=90.42  E-value=0.17  Score=47.50  Aligned_cols=32  Identities=13%  Similarity=0.049  Sum_probs=25.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc----CCCc--cCcH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL----GYTP--LSTK  218 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L----gY~f--vDTD  218 (261)
                      ..|.++|..|+||||++..||..|    |++.  +|+|
T Consensus       101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D  138 (433)
T 2xxa_A          101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD  138 (433)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            468899999999999999999776    6554  4555

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.38  E-value=0.18  Score=40.03  Aligned_cols=23  Identities=4%  Similarity=0.046  Sum_probs=20.2

Q ss_pred             CceEEEEecCCCchhHHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      -.+|.++|+.|+||||+...|..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            35899999999999999998863

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=90.34  E-value=0.14  Score=46.42  Aligned_cols=25  Identities=12%  Similarity=0.259  Sum_probs=20.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .|.++ |+|++||||||+-..++-+|
T Consensus        23 ~g~~~-i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           23 SGITV-VEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             SEEEE-EECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEE-EECCCCCCHHHHHHHHHHHh
Confidence            46555 99999999999999988665

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=90.22  E-value=0.17  Score=39.15  Aligned_cols=24  Identities=4%  Similarity=0.083  Sum_probs=20.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ...+|.|+|+.|+||||+...|..
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            445799999999999999888764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=90.18  E-value=0.25  Score=42.83  Aligned_cols=58  Identities=16%  Similarity=0.184  Sum_probs=38.9

Q ss_pred             cCeEEEEEEecCCCCCCcccccchhHHH-----------------HHHHhhcCCc--eEEEEecCCCchhHHHHHHHHh
Q 024881          150 EDQLVINLKKQDPELKWPDIVESWESLT-----------------AGSMQLLKGT--SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       150 D~~lvv~L~K~d~~m~Wp~~~e~We~l~-----------------~g~~~lLkG~--sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ++..++-|-|.|- .. +...+.|....                 ..+.+.++..  ++.+||.+|+||||+...|+..
T Consensus        46 ~k~~iivlNK~DL-~~-~~~~~~~~~~~~~~g~~v~iSa~~~~gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~  122 (262)
T 3cnl_A           46 RKETIILLNKVDI-AD-EKTTKKWVEFFKKQGKRVITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGK  122 (262)
T ss_dssp             TSEEEEEEECGGG-SC-HHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCcEEEEECccC-CC-HHHHHHHHHHHHHcCCeEEEECCCCcCHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcc
Confidence            6677777777775 22 22334443222                 2344566664  9999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1wfia_	131	b.15.1.4 (A:) Nuclear migration protein nudC {Mous	6e-12
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	8e-10
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	8e-06
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	4e-04

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Length = 131

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.5 bits (144), Expect = 6e-12
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           ++   Y ++   AE++L +          KD+ VD     L V +      +      +L
Sbjct: 5   SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVV----DGEL 60

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
           ++++K  E+ W I D   + ++L+K +    W  +V S
Sbjct: 61  YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTS 98

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 8e-10
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           A    Y +S    ++E+R+ +    +   K + V    + + V +        L+E  +L
Sbjct: 17  AVRENYTWSQDYTDLEVRVPVPK-HVVKGKQVSVALSSSSIRVAMLEENGERVLME-GKL 74

Query: 136 FDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVES 172
             KI    ++W ++  + V+    +  E  W  I+E 
Sbjct: 75  THKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEG 111

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 8e-06
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 81  YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIK 140
           Y++    +++ + L +   +     D+ V+     L+  V         ++   L   I 
Sbjct: 5   YDWYQTESQVVITLMI---KNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLE-LLHPII 60

Query: 141 PTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTA 178
           P ++ + +   ++ I LKK +           WE L  
Sbjct: 61  PEQSTFKVLSTKIEIKLKKPEA--------VRWEKLEG 90

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 98  SLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL 157
              ++ SKD+ V+ + + LT            +    LF  I P ++     +  ++  L
Sbjct: 18  EFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCL 77

Query: 158 KKQDPELKWPDIVES 172
           +K +    WP + + 
Sbjct: 78  RKGESGQSWPRLTKE 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	99.88
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.82
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.81
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.81
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	99.8
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	99.64
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.49
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	99.46
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.16
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.15
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.15
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.07
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.03
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.02
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.98
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.96
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.94
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.94
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.91
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.89
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.83
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.82
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.79
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.74
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.72
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.69
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.68
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	98.64
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.55
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.48
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.35
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.33
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.3
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.29
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.17
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.12
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.95
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.93
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.92
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.91
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.88
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.84
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.83
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.75
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.54
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.44
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.43
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.4
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.4
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.39
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.38
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.38
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.27
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.22
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.21
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.2
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.16
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.06
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.04
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.97
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.95
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.88
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.86
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.77
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.73
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.71
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.66
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.57
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.54
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.5
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.5
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.46
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.46
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.38
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.34
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.31
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.31
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.2
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.14
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.11
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.9
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.76
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.71
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.69
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.59
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.53
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.51
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.44
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.34
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.28
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.28
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.24
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.21
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.18
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.16
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.13
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.08
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.02
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.01
d1okkd2	207	GTPase domain of the signal recognition particle r	94.98
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.98
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.91
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.89
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.85
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.84
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.76
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.74
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	94.72
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.66
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.54
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.52
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.5
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.49
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.47
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	94.43
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.38
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.33
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.33
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.32
d1j8yf2	211	GTPase domain of the signal sequence recognition p	94.26
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.2
d2qy9a2	211	GTPase domain of the signal recognition particle r	94.09
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.06
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.04
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.03
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.88
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.88
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.87
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.81
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.78
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.74
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.73
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.72
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.68
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.61
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.55
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.51
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.43
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.41
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.38
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.38
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.29
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	93.25
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.11
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.04
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	92.98
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.98
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.88
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	92.84
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.81
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.67
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.61
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.58
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.48
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	92.35
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	92.33
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	92.28
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.21
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.17
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.17
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.11
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.11
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.07
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.98
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	91.9
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.88
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.88
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.87
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	91.77
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	91.76
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	91.64
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.57
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	91.35
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.32
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.32
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.27
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.24
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	91.2
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.16
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.15
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.09
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.08
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.07
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	91.04
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.02
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	91.01
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.86
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.75
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.66
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	90.58
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.48
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.46
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	90.4
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	90.4
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	90.4
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.26
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.22
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.17
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.1
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	90.1
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	89.93
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	89.84
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	89.6
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	89.53
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	89.46
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	89.45
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.38
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.38
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	89.37
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	89.36
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	89.23
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	89.08
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	89.04
d1nrjb_	209	Signal recognition particle receptor beta-subunit	89.01
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	88.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	88.55
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	88.49
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	88.47
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	88.42
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	87.9
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	87.74
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	87.74
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	87.55
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.38
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.31
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	87.09
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.99
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	86.94
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	86.53
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	85.95
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	85.83
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	85.44
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	85.32
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	84.9
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	84.21
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	82.18
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	82.05
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	81.67
d1j33a_	333	Nicotinate mononucleotide:5,6-dimethylbenzimidazol	81.53

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.4e-23  Score=166.24  Aligned_cols=93  Identities=22%  Similarity=0.527  Sum_probs=86.4

Q ss_pred             CCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEec-CeEE
Q 024881           76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLV  154 (261)
Q Consensus        76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD-~~lv  154 (261)
                      ..+++|.|+|+..||+|+|+++...++++|||.|+++.++|+|++++++.+   ++ |+||.+|+++||+|+|+| +.++
T Consensus         5 ~~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~~~l---l~-g~L~~~I~~des~W~ied~~~l~   80 (131)
T d1wfia_           5 SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPV---VD-GELYNEVKVEESSWLIEDGKVVT   80 (131)
T ss_dssp             SSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCS---BC-SCBSSCBCSTTCEEEEETTTEEE
T ss_pred             CCCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcCCcee---ec-ccccCcccccccEEEEeCCCEEE
Confidence            457899999999999999999876689999999999999999999998777   88 999999999999999998 7899


Q ss_pred             EEEEecCCCCCCcccccchhHHHHH
Q 024881          155 INLKKQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       155 v~L~K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      |+|+|.+. ++|      |+||++|
T Consensus        81 i~L~K~~~-~~~------W~~l~~g   98 (131)
T d1wfia_          81 VHLEKINK-MEW------WNRLVTS   98 (131)
T ss_dssp             EEEEBSSS-CCC------CSCSBSS
T ss_pred             EEEEECCC-Ccc------CHHHcCC
Confidence            99999998 899      9999876

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.82  E-value=6e-21  Score=151.30  Aligned_cols=71  Identities=17%  Similarity=0.130  Sum_probs=67.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      .||+|+||||+||||+|+.||+.|||+|+|+|.+||+..|.++++++.+.|+..||+.|..+++.+.....
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~   71 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEK   71 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCS
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHhhhhhhHHHhhhhccchhhhhhhchhhhhccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999986654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.81  E-value=4.8e-21  Score=151.53  Aligned_cols=69  Identities=26%  Similarity=0.312  Sum_probs=65.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMF  255 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~  255 (261)
                      .+|+|+|+|||||||||+.||++|||+|+|+|++||+.+|++|++||+++|++.||++|.++|.+....
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~g~~i~ei~~~~g~~~~~~~~~~~l~~~~~~   71 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVATP   71 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhhhhhhhhhhcccchHHHHHHHHHHHHhhccc
Confidence            469999999999999999999999999999999999999999999999999999999999999887653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=1.1e-20  Score=148.79  Aligned_cols=70  Identities=21%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHhcccC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLIMFEP  257 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels~~~~  257 (261)
                      +|.|+||||+||||||+.||++|||+|+|+|.+||+..|.++++++...|+..||+.|.+++.++....+
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~   72 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHD   72 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhcccccc
Confidence            6899999999999999999999999999999999999999999999999999999999999998876554

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.5e-20  Score=144.10  Aligned_cols=94  Identities=21%  Similarity=0.483  Sum_probs=80.5

Q ss_pred             CCCCceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecC-eEE
Q 024881           76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLV  154 (261)
Q Consensus        76 ~~t~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~-~lv  154 (261)
                      +.+++|.|+|+..+|+|+||||. +.+++|||.|+++.++|+|.+++...-..+++ ++||.+|.|+||.|+|+++ .++
T Consensus        17 ~~~~~Y~W~Qt~~~V~i~i~lp~-~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~-g~L~~~I~~deS~w~i~~~~~~i   94 (124)
T d1wgva_          17 AVRENYTWSQDYTDLEVRVPVPK-HVVKGKQVSVALSSSSIRVAMLEENGERVLME-GKLTHKINTESSLWSLEPGKCVL   94 (124)
T ss_dssp             BCCSSCEEEEETTEEEEEEECCT-TCCSGGGEEEEECSSEEEEEEECSSSEEEEEE-EEBSSCBCTTTCEEEECTTSEEE
T ss_pred             cCCCCeEEEeECCEEEEEEEeCC-CCcchhhEEEEEEeCEEEEEEeccCCcceEEe-CcccCcccccccEEEEeCCCEEE
Confidence            34679999999999999999997 25789999999999999999998876666798 9999999999999999996 456


Q ss_pred             EEEEecCCCCCCcccccchhHHHHH
Q 024881          155 INLKKQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       155 v~L~K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      +.|+|.+.  .|      |++|++|
T Consensus        95 ~~lkK~~~--~~------W~~L~~g  111 (124)
T d1wgva_          95 VNLSKVGE--YW------WNAILEG  111 (124)
T ss_dssp             EEECBSSS--CC------CSCSBTT
T ss_pred             EEEEecCC--Cc------ChhhccC
Confidence            67777665  57      7777655

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5e-16  Score=114.36  Aligned_cols=85  Identities=16%  Similarity=0.328  Sum_probs=76.1

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCcceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~  158 (261)
                      -+|.|.|+..+|.|+|++|.   ...+|+.|+++.++|+|.++..+.-.-+++ ++||++|.|++|.|+++++.|+|+|+
T Consensus         3 ~ry~W~Qt~~~V~i~i~~~~---~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~-~~L~~~I~p~~s~~~~~~~kiei~L~   78 (92)
T d1rl1a_           3 IKYDWYQTESQVVITLMIKN---VQKNDVNVEFSEKELSALVKLPSGEDYNLK-LELLHPIIPEQSTFKVLSTKIEIKLK   78 (92)
T ss_dssp             CCEEEEECSSEEEEEECCCS---CCGGGEEEECSSSCEEEEEECTTSSEEEEE-ECBSSCCCGGGEEEEECSSSEEEEEE
T ss_pred             CceeEEeCCCEEEEEEEeCC---CChHheEEEEecCEEEEEEEcCCCcEEEEE-EEcCcccCchhcEEEEeCCEEEEEEE
Confidence            48999999999999999986   688999999999999999987665555688 89999999999999999999999999


Q ss_pred             ecCCCCCCcc
Q 024881          159 KQDPELKWPD  168 (261)
Q Consensus       159 K~d~~m~Wp~  168 (261)
                      |.++ ..||.
T Consensus        79 K~~~-~~W~~   87 (92)
T d1rl1a_          79 KPEA-VRWEK   87 (92)
T ss_dssp             CSSC-CCCSS
T ss_pred             ECCC-CcCcC
Confidence            9988 55654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.1e-14  Score=105.74  Aligned_cols=67  Identities=21%  Similarity=0.250  Sum_probs=61.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      .+|+|+|+||+|||||||.||++||++|+|.|.......|..........|+...+.++........
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELT   69 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhc
Confidence            3799999999999999999999999999999999999999999999999999998888766654443

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.3e-14  Score=106.60  Aligned_cols=87  Identities=22%  Similarity=0.297  Sum_probs=76.5

Q ss_pred             ceEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCC-cceeeeecccccCCCCCCceeeEEecCeEEEEEE
Q 024881           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG-SFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (261)
Q Consensus        80 ~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~-~~~tlId~g~L~~kIk~~Et~W~IdD~~lvv~L~  158 (261)
                      .|.|+|+..+|.|+|++|.     .+|+.|+++.++|.|.+.+.. +-..+++ ++||.+|.|++|.|.+++..|.|.|.
T Consensus         5 ~~~W~Qt~~~V~i~I~v~~-----~~~~~v~i~~~~l~~~~~~~~~~~~y~l~-~~L~~~I~~~~s~~~v~~~kiei~L~   78 (110)
T d1ejfa_           5 SAKWYDRRDYVFIEFCVED-----SKDVNVNFEKSKLTFSCLGGSDNFKHLNE-IDLFHCIDPNDSKHKRTDRSILCCLR   78 (110)
T ss_dssp             CEEEEECSSEEEEEECCTT-----EEEEEEEEETTEEEEEEEETTTTEEEEEE-EEBSSCEEEEEEEEEECSSCEEEEEE
T ss_pred             CcEEEECCCEEEEEEEeCC-----CCCceEEEEeceEEEEEEecCCCceEEEE-EEcccCcccCccEEEEeCCEEEEEEE
Confidence            7999999999999999985     579999999999999987643 3334588 99999999999999999999999999


Q ss_pred             ecCCCCCCcccccchhHHHHH
Q 024881          159 KQDPELKWPDIVESWESLTAG  179 (261)
Q Consensus       159 K~d~~m~Wp~~~e~We~l~~g  179 (261)
                      |.++ ..|      |++|+++
T Consensus        79 K~~~-~~~------W~~L~~~   92 (110)
T d1ejfa_          79 KGES-GQS------WPRLTKE   92 (110)
T ss_dssp             ESST-TCC------CSSSBSS
T ss_pred             EcCC-CCC------CCceecC
Confidence            9998 678      8888765

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.4e-13  Score=102.83  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=54.4

Q ss_pred             HHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhCCCHHH--HHHhhCchhHHhhHHHHHHHHhc
Q 024881          179 GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDS--WMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       179 g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~agkSI~e--IFaeeGE~~FRelEs~VLeels~  254 (261)
                      |-..-.+|+.|+|+|+|||||||+|++||++|++.++|++.++.....+....  .|..++...+.+....++..+..
T Consensus        12 ~~~~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (195)
T d1x6va3          12 GTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFAD   89 (195)
T ss_dssp             SSSCSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHh
Confidence            33344589999999999999999999999999999999999887666553333  33344444444444555554443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.15  E-value=5.8e-12  Score=94.54  Aligned_cols=65  Identities=14%  Similarity=0.052  Sum_probs=44.2

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcH-----HHHHHHhCCCHHHHHHhhCchhHHhhHHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK-----ELLETFAKQTIDSWMLAEGSDSVVNGECD  247 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD-----eLIEq~agkSI~eIFaeeGE~~FRelEs~  247 (261)
                      ..+|..|+|+|+|||||||||++||++|+..+++.+     +.+....+......+....+...+..+..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVA   72 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccccccchhHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999976555433     34444555554444444444444444433

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.15  E-value=7.5e-12  Score=94.40  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=36.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      ++|+|+|+|||||||+|+.||++|||+++|+|++++...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~   43 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ   43 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhc
Confidence            479999999999999999999999999999999998754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.07  E-value=5.8e-11  Score=90.05  Aligned_cols=68  Identities=16%  Similarity=0.110  Sum_probs=45.1

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcC-CCccCcHHHHHHHhCCCHHHHHHhhCchhHHhhHHHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLG-YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESL  252 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~Lg-Y~fvDTDeLIEq~agkSI~eIFaeeGE~~FRelEs~VLeel  252 (261)
                      =+|++|.|.|+|||||||+|+.||++|+ |.+++.|++ .....+........++...+...+..++..+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL-VKENHFYTEYDTELDTHIIEEKDEDRLLDFM   71 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH-HHHTTCSCC------CCCCCHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHH-HHHHhhhhhHHHhhcccchHHHHHHHHHHHH
Confidence            4799999999999999999999999996 555555554 4555566666655555555555555555433

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.03  E-value=8.1e-11  Score=92.87  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=37.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq  223 (261)
                      +|++|.|+|++||||||+|+.||+++||.+++++++|.+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~   40 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA   40 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence            689999999999999999999999999999999999954

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.02  E-value=1.1e-10  Score=94.47  Aligned_cols=68  Identities=15%  Similarity=0.140  Sum_probs=48.4

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH-HhCCCHH-----HHHHhhC---chhHHhhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET-FAKQTID-----SWMLAEG---SDSVVNGECDVLESL  252 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq-~agkSI~-----eIFaeeG---E~~FRelEs~VLeel  252 (261)
                      +.++|.|+|++||||||+|+.||+++||.++|+++++.+ +...+..     +.+....   .+.+.+++.+.+...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~   81 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNL   81 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhh
Confidence            567899999999999999999999999999999999954 3333332     2222221   245555555555443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.98  E-value=2.4e-10  Score=88.26  Aligned_cols=39  Identities=15%  Similarity=0.233  Sum_probs=36.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      ++|+|+|++||||||+|+.||+.+|+.++++++++.+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~   39 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAM   39 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhh
Confidence            579999999999999999999999999999999998643

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=2.3e-10  Score=90.23  Aligned_cols=68  Identities=16%  Similarity=0.041  Sum_probs=56.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH------hCCCHHHHHHhhCchhHHhhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~------agkSI~eIFaeeGE~~FRelEs~VLeels~  254 (261)
                      +.|+|+|++||||||+|+.||+++|+.++++++++++.      .|+.|.+++...+...++.....+..++..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~   76 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN   76 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhc
Confidence            57999999999999999999999999999999999875      456678888887777777766666666653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=4.4e-10  Score=87.92  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=53.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC------CCHHHHHHhhCchhHHhhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLESLI  253 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag------kSI~eIFaeeGE~~FRelEs~VLeels  253 (261)
                      ++|+|.|+|||||||+|+.||+.+|+.++|+++++.+...      ..+.++ .+.|+..-.++..+++.+..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~l~~~~   72 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRY-LDAGDLVPSDLTNELVDDRL   72 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHH-HHHTCCCCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHH-HHhhhhhhhHHHHHHHHHHh
Confidence            5899999999999999999999999999999999877533      334444 35677777788888887765

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.94  E-value=8.1e-11  Score=89.12  Aligned_cols=47  Identities=23%  Similarity=0.293  Sum_probs=40.0

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhCCCHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQTID  230 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~agkSI~  230 (261)
                      |.|+-|+|+|+|||||||||+.||++||++++  |.|++.+...+....
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~   50 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRID   50 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcc
Confidence            68899999999999999999999999999885  668887776655443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.91  E-value=6.7e-10  Score=87.17  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=35.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~  224 (261)
                      ++|+|+|++||||||+|+.||+.||+.++++++++.+.
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~   38 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAA   38 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHh
Confidence            57999999999999999999999999999999998654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.1e-09  Score=85.45  Aligned_cols=52  Identities=19%  Similarity=0.169  Sum_probs=43.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh------CCCHHHHHHhhCc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGS  238 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a------gkSI~eIFaeeGE  238 (261)
                      ++|+|+|++||||||+|+.||+.+||.++++++++.+..      ++.|.+++....-
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~   58 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKL   58 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCC
Confidence            589999999999999999999999999999999997643      3456777665443

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.83  E-value=1.1e-09  Score=86.30  Aligned_cols=42  Identities=10%  Similarity=0.104  Sum_probs=38.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag  226 (261)
                      +.++|+|.|++||||||+|+.||+.+|+.++|+++++++...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~   43 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIA   43 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhh
Confidence            467899999999999999999999999999999999987653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=2.6e-09  Score=84.45  Aligned_cols=64  Identities=14%  Similarity=0.106  Sum_probs=47.2

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC-------CCHHHHHHhhCchhHHhhHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK-------QTIDSWMLAEGSDSVVNGECDVLES  251 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag-------kSI~eIFaeeGE~~FRelEs~VLee  251 (261)
                      -|+|+|++||||||+|+.||+.+|+.++|+++++.+...       +.|.+.+...+......+...+++.
T Consensus        10 iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   80 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNA   80 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHH
Confidence            499999999999999999999999999999999965432       2355555555544444444444443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.79  E-value=6.2e-10  Score=82.74  Aligned_cols=52  Identities=12%  Similarity=0.051  Sum_probs=40.3

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCC-ccCcHHHHHHHhCCCHHHHHHhhCch
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETFAKQTIDSWMLAEGSD  239 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~-fvDTDeLIEq~agkSI~eIFaeeGE~  239 (261)
                      -|+|+|++||||||||+.||+.+++. +++.|.+.+...+..+......++..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   56 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA   56 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHH
Confidence            38999999999999999999999987 45778877777666555544444433

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.74  E-value=6.6e-09  Score=82.38  Aligned_cols=44  Identities=32%  Similarity=0.407  Sum_probs=39.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      ++-++.-|+|+|++||||||+|+.||+.+|+.++|++++|.+..
T Consensus         4 ~~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~   47 (194)
T d3adka_           4 KLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEV   47 (194)
T ss_dssp             HHHTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHH
Confidence            34466779999999999999999999999999999999998765

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.72  E-value=2.9e-09  Score=83.74  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=36.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~  224 (261)
                      |+.-|+|+|++||||||+++.||+.+|+.++++++++.+.
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~   44 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQE   44 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHH
Confidence            5567999999999999999999999999999999999654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.3e-08  Score=79.78  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=36.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      +-|+|+|++||||||+|+.||+.|||..+++.+++.+..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~   40 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER   40 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHH
Confidence            469999999999999999999999999999999997655

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.1e-09  Score=82.79  Aligned_cols=38  Identities=26%  Similarity=0.082  Sum_probs=34.4

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      =|+|+|++||||||+|+.||++||+.++++|.+.+...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~   45 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN   45 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHH
Confidence            37789999999999999999999999999999876654

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.5e-08  Score=77.19  Aligned_cols=90  Identities=10%  Similarity=0.127  Sum_probs=71.5

Q ss_pred             CCCCCceEEcccC-ceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCc------------ceeeeecccccCCCCC
Q 024881           75 PANTSQYEFSDGS-AEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS------------FITLIETNQLFDKIKP  141 (261)
Q Consensus        75 ~~~t~~Y~wTqtl-~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~------------~~tlId~g~L~~kIk~  141 (261)
                      +.+.-+|.|=|+. ..|-|+|.+..   +...++.|+++.++|.|.++....            -.-.++ -+||+.|.|
T Consensus        16 ~~~~ir~dwyq~~~~~V~VtI~~K~---v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~~I~p   91 (134)
T d1wh0a_          16 NLAFVKNDSYEKGPDSVVVHVYVKE---ICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQ-VKLRNLIEP   91 (134)
T ss_dssp             EESCCCEEEEEETTTEEEEEEECCS---BCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEE-EEBSSCEEE
T ss_pred             cccccccceeecCCCEEEEEEEeCC---CchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEe-eecccccCh
Confidence            3445577777775 78999999998   567999999999999999963321            112244 589999999


Q ss_pred             CceeeEEecCeEEEEEEecCCCCCCccc
Q 024881          142 TETIWYIDEDQLVINLKKQDPELKWPDI  169 (261)
Q Consensus       142 ~Et~W~IdD~~lvv~L~K~d~~m~Wp~~  169 (261)
                      ++|.|.+..+.|.|.|+|.++ .+||.+
T Consensus        92 e~S~~~v~~~kiei~L~K~~~-~~W~~L  118 (134)
T d1wh0a_          92 EQCTFCFTASRIDICLRKRQS-QRWGGL  118 (134)
T ss_dssp             EEEEEEECSSEEEEEEEESSS-CCCSCS
T ss_pred             hHcEEEeCCCEEEEEEEeCCC-CcCcCc
Confidence            999999999999999999998 556443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.55  E-value=1.7e-08  Score=75.36  Aligned_cols=42  Identities=21%  Similarity=0.156  Sum_probs=34.0

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHHHHHhC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAK  226 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLIEq~ag  226 (261)
                      ..+=|+|.|.|||||||||+.||++||+.++  |.|.+.+...+
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~   45 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL   45 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccc
Confidence            3445889999999999999999999998875  56777665443

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.48  E-value=4.2e-08  Score=77.66  Aligned_cols=41  Identities=24%  Similarity=0.290  Sum_probs=36.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      |-+.|.+-|++||||||+|+.||+.|||.++||-+|.-.++
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            44568888999999999999999999999999999988765

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.47  E-value=2.9e-08  Score=73.67  Aligned_cols=37  Identities=14%  Similarity=0.137  Sum_probs=31.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcH--HHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLET  223 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD--eLIEq  223 (261)
                      ++|.++|++|+||||+++.||+.+|+++++.+  .++.+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~~~~   46 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFE   46 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHHhhh
Confidence            57999999999999999999999999998654  44444

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.35  E-value=1.9e-07  Score=74.83  Aligned_cols=74  Identities=12%  Similarity=0.117  Sum_probs=51.6

Q ss_pred             cccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcC--CCccCcHHHHHHHhCCCHHHHHHhhCchhHHhh
Q 024881          169 IVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNG  244 (261)
Q Consensus       169 ~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~Lg--Y~fvDTDeLIEq~agkSI~eIFaeeGE~~FRel  244 (261)
                      +.+.|+-+.+|....=++..|.|+|++|+|||++++.||..++  |..+++|++-+..  .--..+....+...|...
T Consensus        15 ~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~--~~~~~~~~~~~~~~~~~~   90 (273)
T d1gvnb_          15 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH--PNFDELVKLYEKDVVKHV   90 (273)
T ss_dssp             HHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS--TTHHHHHHHHGGGCHHHH
T ss_pred             HHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHh--ccCcccchhhhHHHHHHH
Confidence            3466777877777666677899999999999999999999984  5557888875432  222334444444444443

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.3e-07  Score=73.63  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=33.6

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      |.+-|++||||+|+|+.||++||+.+++|-+|+-+++
T Consensus         6 I~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a   42 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA   42 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            6666999999999999999999999999999987644

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=2.4e-07  Score=71.57  Aligned_cols=54  Identities=11%  Similarity=0.096  Sum_probs=41.0

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCc-----cCcHHHHHHHhCCCHHHHHHhhCchhH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTP-----LSTKELLETFAKQTIDSWMLAEGSDSV  241 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~f-----vDTDeLIEq~agkSI~eIFaeeGE~~F  241 (261)
                      =|.|||.+||||||+++.||+.|++..     ++.|.+-+...+.....-+...+.+..
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~   62 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEG   62 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccc
Confidence            489999999999999999999887554     566988888887765554444444333

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.29  E-value=1.9e-07  Score=69.37  Aligned_cols=66  Identities=12%  Similarity=0.149  Sum_probs=44.8

Q ss_pred             EEEEecCCCchhHHHHHHH-HhcCCCccCcHHHHHHHhCCCHHH--HHHhhCchhHHhhHHHHHHHHhc
Q 024881          189 IFLVGDSTEVNEKVALELA-VGLGYTPLSTKELLETFAKQTIDS--WMLAEGSDSVVNGECDVLESLIM  254 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA-~~LgY~fvDTDeLIEq~agkSI~e--IFaeeGE~~FRelEs~VLeels~  254 (261)
                      |.|+|++||||||+++.|+ +..|+.++++|++.+...+....+  .+...-+...+++..+++..+..
T Consensus         5 Iii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILY   73 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            7899999999999999886 456999999999998886543322  12222233344444455554443

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=2e-07  Score=74.36  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=32.8

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE  222 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIE  222 (261)
                      =|.|+|++||||||+++.|++.+||.+++.|++..
T Consensus        16 liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~   50 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGS   50 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHH
Confidence            48999999999999999999999999999999854

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=8.2e-07  Score=71.81  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=33.8

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHhC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~ag  226 (261)
                      |-|+|++|||||||++.|+ .+||..+|+|++..++..
T Consensus         6 IgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~   42 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVE   42 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTS
T ss_pred             EEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHh
Confidence            6689999999999999986 789999999999998764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.95  E-value=2.6e-06  Score=68.65  Aligned_cols=37  Identities=16%  Similarity=0.176  Sum_probs=33.1

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccC-cHHHHHHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLS-TKELLETFA  225 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvD-TDeLIEq~a  225 (261)
                      |-|.|.+|||||||++.|++.+||..+| .|.+-+++.
T Consensus         4 IgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l~   41 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHHH
Confidence            7899999999999999999999999999 677766653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.93  E-value=2.7e-06  Score=69.94  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=32.2

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc----CCC--ccCcHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL----GYT--PLSTKELLE  222 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L----gY~--fvDTDeLIE  222 (261)
                      -||.-|+|.|++||||||+|+.|+++|    |+.  .+|.|++=+
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~   66 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF   66 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence            466679999999999999999999877    555  488888643

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.92  E-value=3.4e-06  Score=65.84  Aligned_cols=37  Identities=24%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      =|-|+|++|||||||++.|. .+||..+|+|++..+..
T Consensus         5 IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~~   41 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARAR   41 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHhh
Confidence            36689999999999999995 59999999999877654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.91  E-value=3.8e-06  Score=67.46  Aligned_cols=36  Identities=14%  Similarity=0.147  Sum_probs=32.3

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq~a  225 (261)
                      |-|+|.+|||||||++.|. .+||+.+|+|++.-+..
T Consensus         5 IgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~   40 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVV   40 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHH
Confidence            6789999999999999997 58999999999987754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.88  E-value=2.8e-06  Score=63.66  Aligned_cols=28  Identities=11%  Similarity=-0.018  Sum_probs=23.9

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      |.+.|++|+||||+++.||++|++..++
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~~~~~   31 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDNQGIN   31 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHTTTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence            5678999999999999999999765443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.84  E-value=3.4e-06  Score=62.77  Aligned_cols=29  Identities=7%  Similarity=-0.044  Sum_probs=25.0

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      -|++.|++||||||+++.||++|+...++
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~~~~~   31 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVN   31 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence            48999999999999999999999665443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=3.5e-06  Score=71.85  Aligned_cols=42  Identities=17%  Similarity=0.202  Sum_probs=33.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCc--cCcHHHHHHHhCCC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTP--LSTKELLETFAKQT  228 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~f--vDTDeLIEq~agkS  228 (261)
                      +.|.|+|++|+|||++++.||+.+|+++  ++..+++..+.|.+
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~   89 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVG   89 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCC
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHH
Confidence            5699999999999999999999999998  45545544443433

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.75  E-value=8.3e-06  Score=68.86  Aligned_cols=49  Identities=14%  Similarity=0.196  Sum_probs=37.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccC--cHHHHHHHhCC---CHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQ---TIDSWMLA  235 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD--TDeLIEq~agk---SI~eIFae  235 (261)
                      ..|.|.|++|+|||++++.||+.+|++++.  ..+++.++.|.   -+.++|..
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~   96 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFET   96 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHHHHHHH
Confidence            459999999999999999999999999955  45777654443   34555543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.54  E-value=2.6e-05  Score=62.28  Aligned_cols=30  Identities=17%  Similarity=0.091  Sum_probs=27.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      .++.|.|++|+|||++++.||+.+|+.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            479999999999999999999999999864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=6e-05  Score=61.08  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=39.3

Q ss_pred             CCC-cccccchhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          164 LKW-PDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       164 m~W-p~~~e~We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |+| |-.-+.|+.+.+.+.+-=-.-.+.|.|+.|+||+|+++.+|+.|
T Consensus         1 ~~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2           1 MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             CCCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhc
Confidence            788 87788899998887744334459999999999999999999988

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.43  E-value=2.8e-05  Score=58.55  Aligned_cols=27  Identities=15%  Similarity=0.259  Sum_probs=24.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      ++|.|+|.+|+||||+.+.+|..|++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            479999999999999999999988653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=4.1e-05  Score=61.16  Aligned_cols=30  Identities=27%  Similarity=0.212  Sum_probs=27.4

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      ..++.|.|++|+||||+++.||+.+|+.++
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            357999999999999999999999998765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.40  E-value=5.5e-05  Score=63.35  Aligned_cols=58  Identities=17%  Similarity=0.219  Sum_probs=41.0

Q ss_pred             CCCCCCcc----cccchhHHHHHHHhhc--CCceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          161 DPELKWPD----IVESWESLTAGSMQLL--KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       161 d~~m~Wp~----~~e~We~l~~g~~~lL--kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      |+=+.|-|    |+..+..+.+.+...-  ...+|.|.|++|+|||++++.||+.+|++|+..+
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence            44456654    3445555555444322  1246999999999999999999999999998653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.39  E-value=3.3e-05  Score=61.86  Aligned_cols=32  Identities=22%  Similarity=0.194  Sum_probs=29.1

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      .++.|.|++|+||||+++.+|+.+||.+..+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~   67 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS   67 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCCEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEecc
Confidence            47999999999999999999999999977654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.7e-05  Score=56.51  Aligned_cols=24  Identities=17%  Similarity=0.189  Sum_probs=22.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++|+|+|++|+||||+.+.+|+.|
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            589999999999999999999887

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.38  E-value=8.6e-05  Score=60.41  Aligned_cols=39  Identities=18%  Similarity=0.299  Sum_probs=32.8

Q ss_pred             HHHHHHHhhc------CCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          175 SLTAGSMQLL------KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       175 ~l~~g~~~lL------kG~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      .+.+-+.+.|      .|.-|+|.|++|+||||..|.+|++||..
T Consensus        16 ~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          16 RFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             HHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            4556666666      46679999999999999999999999975

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.27  E-value=0.0001  Score=57.70  Aligned_cols=25  Identities=12%  Similarity=-0.068  Sum_probs=23.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .+++|+|++|+|||++++.||+.|.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHh
Confidence            5899999999999999999999984

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.22  E-value=4.9e-05  Score=57.40  Aligned_cols=29  Identities=21%  Similarity=0.105  Sum_probs=25.1

Q ss_pred             EEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          189 IFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      |-+.|.+||||||+++.|++.|+...++.
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~~~~~~~   53 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLREQGISV   53 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhccccccc
Confidence            67999999999999999999988665544

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=8.9e-05  Score=58.48  Aligned_cols=29  Identities=17%  Similarity=0.190  Sum_probs=25.4

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCccC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fvD  216 (261)
                      =|-+.|..||||||+++.|++.||...++
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~   32 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD   32 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGGGSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhchhccc
Confidence            36788999999999999999999976554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.20  E-value=5.9e-05  Score=60.08  Aligned_cols=53  Identities=25%  Similarity=0.236  Sum_probs=37.9

Q ss_pred             EecCCCCCCcccccchhHHHHHHHhhcCCc---eEEEEecCCCchhHHHHHHHHhcCC
Q 024881          158 KKQDPELKWPDIVESWESLTAGSMQLLKGT---SIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       158 ~K~d~~m~Wp~~~e~We~l~~g~~~lLkG~---sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      +|..| ..+.||+ -.+-+.+.+.+.++.-   +++|.|++|+||||+++.||+.++.
T Consensus        16 ~ky~P-~~~~dii-g~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          16 EKYRP-QRLDDIV-GQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             HHTCC-CSTTTCC-SCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             HHhCC-CCHHHcc-CcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            45555 4555665 2345555566555544   7999999999999999999998853

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=9e-05  Score=67.84  Aligned_cols=59  Identities=10%  Similarity=0.108  Sum_probs=46.5

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhcCCCcc---------------CcHHHHHHHhCCCHHHHHHhhCchhH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL---------------STKELLETFAKQTIDSWMLAEGSDSV  241 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv---------------DTDeLIEq~agkSI~eIFaeeGE~~F  241 (261)
                      -+...||.|||+.|+|||-++|.||+.|+-+|+               |.+.+|+++.......++.++-...+
T Consensus        46 ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~DVesii~~L~~~a~~~v~~~e~~~V~  119 (443)
T d1g41a_          46 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNR  119 (443)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             ccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecchhHHHHHHHHHHhhhHHHHHHHHHH
Confidence            355779999999999999999999999988885               56777777777777776666544333

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=9.9e-05  Score=63.32  Aligned_cols=55  Identities=13%  Similarity=0.134  Sum_probs=41.1

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCcc--CcHHHH-----HHHhCCCHHHHHHhhCc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELL-----ETFAKQTIDSWMLAEGS  238 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv--DTDeLI-----Eq~agkSI~eIFaeeGE  238 (261)
                      ..+.+|.|+|++|+|||.+|+.||+.++-+|+  |.-++.     -...|+-+..+|...|.
T Consensus        47 ~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~  108 (309)
T d1ofha_          47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG  108 (309)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeeccccccccchhhhc
Confidence            35778999999999999999999999987754  444553     23344457777766665

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00014  Score=53.64  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=22.7

Q ss_pred             EEEEecCCCchhHHHHHHHHhc---CCCc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL---GYTP  214 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L---gY~f  214 (261)
                      |.++|.+||||||+++.|++.|   |++.
T Consensus         5 i~itG~~GSGKTTL~~~L~~~l~~~g~~v   33 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIPALCARGIRP   33 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            7899999999999999999875   6553

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.97  E-value=0.00022  Score=55.26  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=23.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |.=|+|+|++|+||+|+.+.|++.+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            6779999999999999999999886

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.95  E-value=0.00013  Score=56.30  Aligned_cols=29  Identities=3%  Similarity=-0.062  Sum_probs=25.7

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      =+++-|++-|..||||||+++.||+.|+-
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35667999999999999999999999964

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00018  Score=57.22  Aligned_cols=49  Identities=18%  Similarity=0.047  Sum_probs=35.9

Q ss_pred             CcccccchhHHHHHHHhhcCCc---eEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          166 WPDIVESWESLTAGSMQLLKGT---SIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       166 Wp~~~e~We~l~~g~~~lLkG~---sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      ..|++ --+.+.+-+.+.++.-   ++.|.|++|+||||+++.||+.|+....
T Consensus        14 ~~d~i-g~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~   65 (224)
T d1sxjb2          14 LSDIV-GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY   65 (224)
T ss_dssp             GGGCC-SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH
T ss_pred             HHHhc-CCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhcccc
Confidence            34544 2245556666665553   5899999999999999999999986543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00018  Score=57.12  Aligned_cols=23  Identities=13%  Similarity=0.252  Sum_probs=22.1

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +++|+|+.|+||||+++.+|+.|
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            69999999999999999999997

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.00019  Score=60.38  Aligned_cols=41  Identities=20%  Similarity=0.160  Sum_probs=33.0

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCccCcH--HHHHHHhC
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLETFAK  226 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD--eLIEq~ag  226 (261)
                      +..|.|.|++|+|||++++.||..+|++|+..+  ++.....|
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~~   83 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG   83 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhcccc
Confidence            457999999999999999999999999976654  45443333

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.73  E-value=0.0005  Score=61.14  Aligned_cols=34  Identities=18%  Similarity=0.060  Sum_probs=30.1

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDT  217 (261)
                      -++..+.|+|++|+|||++++.||..||+.|+..
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            3445699999999999999999999999999863

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.71  E-value=0.00037  Score=55.16  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=21.8

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcC
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      .|+|+|++|+||+|+++.|++.++
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            489999999999999999998754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00021  Score=56.18  Aligned_cols=31  Identities=10%  Similarity=-0.096  Sum_probs=26.5

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      |++-|++-|.-||||||+++.||+.|....+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~~~~   31 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCEDWEV   31 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence            4677999999999999999999999964333

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.57  E-value=0.00046  Score=54.10  Aligned_cols=23  Identities=9%  Similarity=-0.133  Sum_probs=20.8

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +||+|++|+|||++++.+|+.|+
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHH
Confidence            57789999999999999999873

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.00048  Score=57.35  Aligned_cols=32  Identities=19%  Similarity=0.119  Sum_probs=29.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCccCcH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTD  218 (261)
                      +.|.|.|++|+|||++++.+|..+|++++..+
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            46999999999999999999999999988765

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.50  E-value=0.00065  Score=52.78  Aligned_cols=31  Identities=6%  Similarity=0.001  Sum_probs=27.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      .+..|.|+|+.|+|||++.+.+|+.+++.+.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~   58 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYI   58 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeE
Confidence            4567999999999999999999999987653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00082  Score=54.38  Aligned_cols=31  Identities=23%  Similarity=0.247  Sum_probs=26.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CCCcc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL  215 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~fv  215 (261)
                      ||+=|.+-|..||||||.++.|++.|   ||..+
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~   35 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE   35 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            57778888999999999999999988   67554

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.0008  Score=52.72  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=28.9

Q ss_pred             HHHHHHHhhcCCc---eEEEEecCCCchhHHHHHHHHhc
Q 024881          175 SLTAGSMQLLKGT---SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       175 ~l~~g~~~lLkG~---sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+.+.+.+.++..   +++|.|++|+||||+++.+|+.|
T Consensus        19 ~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          19 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            3455566666544   48999999999999999999986

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.46  E-value=0.00069  Score=51.44  Aligned_cols=27  Identities=11%  Similarity=0.262  Sum_probs=22.2

Q ss_pred             eEE-EEecCCCchhHHHHHHHHhc---CCCc
Q 024881          188 SIF-LVGDSTEVNEKVALELAVGL---GYTP  214 (261)
Q Consensus       188 sIy-LVGmmGsGKSTVGr~LA~~L---gY~f  214 (261)
                      +|+ ++|..||||||+...|+.+|   ||+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v   32 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRV   32 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeE
Confidence            454 99999999999999998865   5544

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.00086  Score=52.55  Aligned_cols=38  Identities=18%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc-----------------------CCCccCcHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFA  225 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L-----------------------gY~fvDTDeLIEq~a  225 (261)
                      .|.|+|++|+||+|+.+.|++.+                       .|.|++-++.-+...
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~   63 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK   63 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHh
Confidence            58999999999999999999875                       256787777766554

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.34  E-value=0.00093  Score=51.62  Aligned_cols=27  Identities=15%  Similarity=0.134  Sum_probs=23.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc---CCCc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL---GYTP  214 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L---gY~f  214 (261)
                      -|.+-|.-||||||+.+.|++.|   ||..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v   31 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV   31 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
Confidence            48899999999999999999987   6643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0013  Score=53.12  Aligned_cols=28  Identities=18%  Similarity=0.082  Sum_probs=25.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      ||.=|.+-|..||||||+++.||++|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            6888999999999999999999999954

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0012  Score=51.97  Aligned_cols=29  Identities=14%  Similarity=0.102  Sum_probs=25.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc---CCC
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT  213 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L---gY~  213 (261)
                      ||.=|.+-|..||||||..+.|++.|   ||.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~   32 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIR   32 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence            57778899999999999999999987   665

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.00095  Score=52.55  Aligned_cols=47  Identities=6%  Similarity=0.085  Sum_probs=31.7

Q ss_pred             CCcccccchhHHHHHHHhhcCC-c--eEEEEecCCCchhHHHHHHHHhcCC
Q 024881          165 KWPDIVESWESLTAGSMQLLKG-T--SIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       165 ~Wp~~~e~We~l~~g~~~lLkG-~--sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      .+.|++- -+-+.+-+.+.++- .  +++|.|+.|+||||+++.||+.++.
T Consensus        12 ~~~divg-~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          12 TLDEVYG-QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             SGGGCCS-CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             CHHHccC-cHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhc
Confidence            4444442 23344444444322 2  5999999999999999999998864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0012  Score=56.91  Aligned_cols=28  Identities=25%  Similarity=0.396  Sum_probs=26.0

Q ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      ++.|+|++|+|||.+|+.||+.||.+|+
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i   81 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELL   81 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCee
Confidence            6899999999999999999999997775

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0016  Score=51.48  Aligned_cols=26  Identities=8%  Similarity=-0.038  Sum_probs=23.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      .=|++-|..||||||+++.||+.|+-
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            34899999999999999999999963

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0023  Score=51.92  Aligned_cols=26  Identities=15%  Similarity=0.081  Sum_probs=23.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ||.=|+|+|++|+||+|+.+.|.+..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            68889999999999999999998763

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0029  Score=49.90  Aligned_cols=24  Identities=13%  Similarity=0.158  Sum_probs=21.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .-|+|+|++|+||+|+.+.|.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            359999999999999999999763

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.69  E-value=0.0022  Score=52.49  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=30.7

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      +.|+-|.|.|.+|+||||++-+|.++ |++++.-|.
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~   46 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQR-GHRLIADDR   46 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCe
Confidence            56788999999999999999999987 999886553

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.59  E-value=0.0028  Score=53.71  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=24.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|||.+||||||+.+.|+..+
T Consensus        37 ~i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          37 KIPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            45567789999999999999999997544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0025  Score=53.83  Aligned_cols=29  Identities=17%  Similarity=0.131  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..|.+||.+||||||+.+.|+..+
T Consensus        25 ~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          25 SIKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            44567789999999999999999998765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0029  Score=53.56  Aligned_cols=29  Identities=28%  Similarity=0.162  Sum_probs=24.4

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|||.+||||||+.+.|+..+
T Consensus        36 ~i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          36 TLRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            44567789999999999999999987654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.44  E-value=0.0043  Score=52.21  Aligned_cols=26  Identities=19%  Similarity=0.162  Sum_probs=23.9

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|-||.|+|++|+|||+++|.||.-|
T Consensus        27 ~~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          27 GIGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CCCeEEEECCCCccHHHHHHHHHHhC
Confidence            55689999999999999999999977

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.34  E-value=0.0043  Score=52.75  Aligned_cols=26  Identities=19%  Similarity=0.058  Sum_probs=22.6

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +|.-+.|+|.+||||||+.+.||-.+
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            56679999999999999999998543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.28  E-value=0.0037  Score=52.58  Aligned_cols=29  Identities=14%  Similarity=-0.010  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++-+|..+.|||.+||||||+.+.|+..+
T Consensus        24 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34567789999999999999999998654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.28  E-value=0.0036  Score=51.32  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDe  219 (261)
                      ..|.-|.|.|++|+||||++..|.++ |+.++.-|.
T Consensus        13 ~~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~   47 (177)
T d1knxa2          13 VFGVGVLLTGRSGIGKSECALDLINK-NHLFVGDDA   47 (177)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCCe
Confidence            46788999999999999999999876 999886654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0047  Score=51.31  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=27.6

Q ss_pred             HHHHHHhhcC---CceEEEEecCCCchhHHHHHHHHhc
Q 024881          176 LTAGSMQLLK---GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       176 l~~g~~~lLk---G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+.-+.+.|.   -.|+.|||.+|.|||++.+.||+++
T Consensus        30 Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            3445555554   2379999999999999999999865

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.21  E-value=0.0046  Score=50.06  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=31.3

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeL  220 (261)
                      ..|+-|.+.|.+|+||||++-+|.++ |++++.-|.+
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~   48 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR-GHRLVADDNV   48 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeE
Confidence            56888999999999999999999988 9998865544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.18  E-value=0.0043  Score=52.35  Aligned_cols=29  Identities=10%  Similarity=0.067  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++=+|..+.|+|.+||||||+.+.||-.+
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            34467789999999999999999988755

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.16  E-value=0.0064  Score=43.80  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +.|.|+|++|+||||+...|+..
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.13  E-value=0.0014  Score=58.02  Aligned_cols=40  Identities=15%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC--CCc--cCcHHHHHHHhCCC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG--YTP--LSTKELLETFAKQT  228 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg--Y~f--vDTDeLIEq~agkS  228 (261)
                      +.|+|++|+|||.+++.||..+|  .+|  ++..++++++-|.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~  169 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDF  169 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCH
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchH
Confidence            44579999999999999999987  344  55667776655543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.08  E-value=0.004  Score=50.62  Aligned_cols=27  Identities=15%  Similarity=0.117  Sum_probs=22.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      =+|.-+.|+|++|+||||+.+.|+..+
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            356668899999999999999998644

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.0057  Score=52.57  Aligned_cols=34  Identities=26%  Similarity=0.267  Sum_probs=26.2

Q ss_pred             HHHHHhhcC---CceEEEEecCCCchhHHHHHHHHhc
Q 024881          177 TAGSMQLLK---GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       177 ~~g~~~lLk---G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+.+.|.   -.|+.|||++|.|||++.+.||+++
T Consensus        27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            334444442   2479999999999999999999874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.0074  Score=48.64  Aligned_cols=40  Identities=20%  Similarity=0.144  Sum_probs=30.4

Q ss_pred             hHHHHHHHhhcCCc----eEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          174 ESLTAGSMQLLKGT----SIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       174 e~l~~g~~~lLkG~----sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      +.+++.+.+.++.-    ++.|.|++|+||||+++.+|+.|++.
T Consensus        18 ~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          18 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            45555555555322    37889999999999999999999764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=94.98  E-value=0.0069  Score=50.13  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=22.7

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++.-|.|||+.|+||||....||..+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45668999999999999999999876

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.98  E-value=0.0061  Score=52.29  Aligned_cols=29  Identities=14%  Similarity=0.227  Sum_probs=24.0

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|..+.|||.+||||||+.+.|+..+
T Consensus        58 ~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          58 NIEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            34456678999999999999999998644

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.91  E-value=0.0059  Score=53.90  Aligned_cols=27  Identities=15%  Similarity=0.015  Sum_probs=24.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      +.||+-|..|+||||+++.||+.|++.
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~~   33 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASGG   33 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhccC
Confidence            469999999999999999999999764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.85  E-value=0.0076  Score=50.13  Aligned_cols=25  Identities=20%  Similarity=0.088  Sum_probs=21.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-|.|||+.|+||||....||.++
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3358999999999999999999775

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.84  E-value=0.0069  Score=53.37  Aligned_cols=30  Identities=20%  Similarity=0.115  Sum_probs=26.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      ++.+.||+-|.-|+||||+++.|++.|+..
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            455679999999999999999999999875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0078  Score=50.81  Aligned_cols=27  Identities=19%  Similarity=0.058  Sum_probs=23.0

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|.-+.|+|++||||||+.+.+|-.+
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            356679999999999999999998543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0072  Score=51.28  Aligned_cols=28  Identities=11%  Similarity=0.003  Sum_probs=23.4

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +=+|.-+.|+|.+||||||+.+.|+-.+
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          28 VPAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             ECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            3456679999999999999999997654

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.72  E-value=0.18  Score=36.62  Aligned_cols=79  Identities=24%  Similarity=0.330  Sum_probs=60.4

Q ss_pred             eEEcccCceEEEEEecCCcccccccceEEEeeCCEEEEEEccCCccee-----e----eecc------cccCCCCCCcee
Q 024881           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFIT-----L----IETN------QLFDKIKPTETI  145 (261)
Q Consensus        81 Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~sL~V~vk~~~~~~t-----l----Id~g------~L~~kIk~~Et~  145 (261)
                      +...++.+++.|.+.||+   .+..|+.|.++++.|.|..++.....+     +    ...|      .|...|.++.-.
T Consensus        13 vdi~e~~~~~~i~~~lPG---~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~   89 (115)
T d1shsa_          13 ISIIEGDQHIKVIAWLPG---VNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENAS   89 (115)
T ss_dssp             EEEEECSSEEEEEEECTT---CCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCE
T ss_pred             eEEEEcCCEEEEEEECCC---CCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceE
Confidence            667789999999999998   688899999999999998765432100     0    0112      345677777788


Q ss_pred             eEEecCeEEEEEEecCC
Q 024881          146 WYIDEDQLVINLKKQDP  162 (261)
Q Consensus       146 W~IdD~~lvv~L~K~d~  162 (261)
                      ..++|..|.|.|.|...
T Consensus        90 A~~~nGvL~I~lpK~~~  106 (115)
T d1shsa_          90 AKFENGVLSVILPKAES  106 (115)
T ss_dssp             EEEETTEEEEEEEBCGG
T ss_pred             EEEECCEEEEEEEeCCC
Confidence            89999999999999754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.66  E-value=0.01  Score=42.81  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      -.+|.|||.+|+||||+.+.+...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999988643

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.54  E-value=0.0078  Score=51.16  Aligned_cols=27  Identities=15%  Similarity=0.089  Sum_probs=22.8

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +-+|.-+-|+|.+||||||+.+.|+-.
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            345667899999999999999999854

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.52  E-value=0.0097  Score=50.52  Aligned_cols=28  Identities=18%  Similarity=0.055  Sum_probs=23.1

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .-+|.-+.|+|++||||||+.+.|+-.+
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3456669999999999999999998543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.50  E-value=0.0046  Score=52.62  Aligned_cols=29  Identities=17%  Similarity=0.122  Sum_probs=24.1

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|..+.|||.+||||||+.+.|+..+
T Consensus        40 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          40 SIEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            44567789999999999999999887544

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.49  E-value=0.0088  Score=49.28  Aligned_cols=25  Identities=28%  Similarity=0.260  Sum_probs=21.3

Q ss_pred             Cce-EEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTS-IFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~s-IyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -.+ |.|||+.|+||||+...||.++
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345 6779999999999999999876

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.47  E-value=0.0081  Score=50.73  Aligned_cols=28  Identities=11%  Similarity=-0.008  Sum_probs=23.8

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .-+|.-+.|+|.+||||||+.+.||-.+
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            3456679999999999999999998755

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.43  E-value=0.02  Score=45.41  Aligned_cols=53  Identities=17%  Similarity=0.076  Sum_probs=44.2

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCcc---CcHHHHHHHh
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL---STKELLETFA  225 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fv---DTDeLIEq~a  225 (261)
                      .+.=..++..++++.+..|+++||+|||-++-.++.+++.+.+   .+..|++|..
T Consensus        72 r~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p~~~L~~q~~  127 (206)
T d2fz4a1          72 RDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWK  127 (206)
T ss_dssp             CHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHHHhcCceeEEEcccchHHHHH
Confidence            5566778888999999899999999999999999999987743   5677877754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.38  E-value=0.011  Score=45.74  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.8

Q ss_pred             EEEEecCCCchhHHHHHHHHhc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |.++|+.||||||+-+.|.+.+
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            7899999999999999998655

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.33  E-value=0.011  Score=52.27  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=28.7

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCc--cCcHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGLGYTP--LSTKELLE  222 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~LgY~f--vDTDeLIE  222 (261)
                      -.|+.++|+.|+|||-++|.||+.++=+|  +|.-++.|
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~e  106 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTE  106 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhcccceeehhhhhccc
Confidence            34799999999999999999999986554  45544444

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.012  Score=42.56  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=23.0

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +..|.-+-+.|.+|+|||+++..+|..
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            445778999999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.32  E-value=0.013  Score=42.92  Aligned_cols=22  Identities=9%  Similarity=0.093  Sum_probs=18.8

Q ss_pred             CceEEEEecCCCchhHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      -..|.|||..|+||||+-..|.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3469999999999999987764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=94.26  E-value=0.011  Score=49.00  Aligned_cols=24  Identities=29%  Similarity=0.137  Sum_probs=17.3

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .-|.|||+.|+||||....||.++
T Consensus        13 ~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          13 YVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             EEEEEECSCCC----HHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            348899999999999999999776

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.012  Score=48.95  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=20.0

Q ss_pred             EEEEecCCCchhHHHHHHHHhc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      |.|||+.|+||||....||.++
T Consensus        12 i~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2          12 ILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7789999999999999999766

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.06  E-value=0.012  Score=46.15  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=28.8

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc----C---CCccCcH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTK  218 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L----g---Y~fvDTD  218 (261)
                      =||-.|||.|.+|+||||+++.|...|    |   |+.+|-|
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            378899999999999999999997666    2   4557766

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.04  E-value=0.012  Score=49.37  Aligned_cols=29  Identities=14%  Similarity=0.187  Sum_probs=23.5

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+|.-+-|+|++|+||||+.+.|+-.+
T Consensus        28 ~i~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          28 KVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34456679999999999999999987544

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.03  E-value=0.0087  Score=50.97  Aligned_cols=28  Identities=14%  Similarity=0.003  Sum_probs=23.6

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .-+|..+.|+|.+||||||+.+.|+-.+
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3456679999999999999999998753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.91  E-value=0.028  Score=45.40  Aligned_cols=37  Identities=14%  Similarity=0.195  Sum_probs=29.1

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC---C--CccCcHHHHHHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG---Y--TPLSTKELLETFA  225 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg---Y--~fvDTDeLIEq~a  225 (261)
                      +||.|.+|+|||.+.+.+|..+.   +  .+++..++.++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMV   80 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHH
Confidence            99999999999999999998763   3  3667766665543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.016  Score=42.44  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.8

Q ss_pred             CceEEEEecCCCchhHHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      |.+|.|+|..++||||+-..|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999988863

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.88  E-value=0.013  Score=44.57  Aligned_cols=28  Identities=21%  Similarity=0.221  Sum_probs=23.6

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+.+|..+-|.|.+|+|||+++-.+|..
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3556778999999999999999888754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.87  E-value=0.0081  Score=51.81  Aligned_cols=23  Identities=26%  Similarity=0.341  Sum_probs=21.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ++.|+|++|+|||.+|+.||+.|
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            57889999999999999999998

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.81  E-value=0.027  Score=42.49  Aligned_cols=33  Identities=12%  Similarity=0.048  Sum_probs=25.6

Q ss_pred             HHHHhhcC-----CceEEEEecCCCchhHHHHHHHHhc
Q 024881          178 AGSMQLLK-----GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       178 ~g~~~lLk-----G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .++-++|.     |.-+.|.|++|+|||+++..+|..+
T Consensus        21 ~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          21 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34455554     5668889999999999999999644

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.78  E-value=0.015  Score=46.95  Aligned_cols=24  Identities=13%  Similarity=0.127  Sum_probs=20.9

Q ss_pred             EEEecCCCchhHHHHHHHHhcCCC
Q 024881          190 FLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       190 yLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      .|||.+|+|||++-.+|+-.||..
T Consensus        28 vlvG~NgsGKS~iL~Ai~~~lg~~   51 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIKWVFGEQ   51 (308)
T ss_dssp             EEECCTTTCSTHHHHHHHHTSCC-
T ss_pred             EEECCCCCcHHHHHHHHHHHhCCC
Confidence            699999999999999998888753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.005  Score=44.49  Aligned_cols=22  Identities=14%  Similarity=0.083  Sum_probs=19.9

Q ss_pred             EEEecCCCchhHHHHHHHHhcC
Q 024881          190 FLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       190 yLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      +|+|++||||||+-..|.-.|+
T Consensus        28 vi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEECCCCCCHHHHHHHHHHHhc
Confidence            5789999999999999998874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.73  E-value=0.02  Score=47.54  Aligned_cols=23  Identities=17%  Similarity=0.146  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .-|.|+||-|.||||+|+.+++.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999865

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.72  E-value=0.02  Score=47.34  Aligned_cols=29  Identities=10%  Similarity=0.181  Sum_probs=23.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTP  214 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~LgY~f  214 (261)
                      +|.++ ++|.+|||||++-..|.-.||+..
T Consensus        25 ~~l~~-i~G~NGsGKS~ileAi~~~lg~~~   53 (427)
T d1w1wa_          25 SNFTS-IIGPNGSGKSNMMDAISFVLGVRS   53 (427)
T ss_dssp             CSEEE-EECSTTSSHHHHHHHHHHHTTC--
T ss_pred             CCEEE-EECCCCCCHHHHHHHHHHHhCCCc
Confidence            45554 889999999999999988888654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.012  Score=48.68  Aligned_cols=27  Identities=19%  Similarity=0.260  Sum_probs=23.3

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHH
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +.-+|.-+-|+|.+|+||||+.+.|+-
T Consensus        21 ~I~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          21 EVRAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            445677799999999999999999985

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.61  E-value=0.014  Score=52.29  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=26.0

Q ss_pred             HHHHHhhc---CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          177 TAGSMQLL---KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       177 ~~g~~~lL---kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.-+.+.|   +--|+.|||++|.|||++...||+++
T Consensus        31 i~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          31 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            34445544   23369999999999999999999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.55  E-value=0.016  Score=48.68  Aligned_cols=28  Identities=14%  Similarity=0.164  Sum_probs=23.2

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +=+|.-+-|+|++||||||+.+.|+-.+
T Consensus        27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          27 VNKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3456678999999999999999987653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.51  E-value=0.025  Score=41.77  Aligned_cols=33  Identities=12%  Similarity=0.254  Sum_probs=24.6

Q ss_pred             HHHHHHhhcCC--ceEEEEecCCCchhHHHHHHHH
Q 024881          176 LTAGSMQLLKG--TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       176 l~~g~~~lLkG--~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      |..++-.++..  .+|.|||..|+||||+...|..
T Consensus         3 ~~~~~~~~~~~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1           3 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             HHHHHHHHHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             hHHHHHHHhCCCeEEEEEECCCCCCHHHHHHHHhc
Confidence            34445545433  4799999999999999988864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.43  E-value=0.018  Score=49.01  Aligned_cols=23  Identities=13%  Similarity=-0.031  Sum_probs=20.1

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+.|+|++||||||+.+.||..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999999999644

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.41  E-value=0.023  Score=40.29  Aligned_cols=22  Identities=9%  Similarity=0.123  Sum_probs=19.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.|||++|+||||+...|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999988763

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.021  Score=49.83  Aligned_cols=23  Identities=22%  Similarity=0.131  Sum_probs=21.5

Q ss_pred             EEEEecCCCchhHHHHHHHHhcC
Q 024881          189 IFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      |-+.|.+||||||+++.|++.|+
T Consensus        83 IGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          83 ISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCCcHHHHHHHHHHh
Confidence            77889999999999999999985

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.027  Score=42.43  Aligned_cols=28  Identities=18%  Similarity=0.280  Sum_probs=24.1

Q ss_pred             ceEEEEecC-CCchhHHHHHHHHhc---CCCc
Q 024881          187 TSIFLVGDS-TEVNEKVALELAVGL---GYTP  214 (261)
Q Consensus       187 ~sIyLVGmm-GsGKSTVGr~LA~~L---gY~f  214 (261)
                      .++|+.|=. |.|||||.--||..|   ||+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rV   33 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRT   33 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeE
Confidence            479999996 999999999999877   7764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.29  E-value=0.024  Score=41.92  Aligned_cols=24  Identities=4%  Similarity=0.145  Sum_probs=20.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      |-.+|.+||+.|+||||+.+.|..
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcC
Confidence            345799999999999999988753

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.25  E-value=0.023  Score=45.27  Aligned_cols=63  Identities=16%  Similarity=0.105  Sum_probs=46.7

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHhc---CC---CccCcHHHHHHHhCCCHHHHHHhh
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL---GY---TPLSTKELLETFAKQTIDSWMLAE  236 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L---gY---~fvDTDeLIEq~agkSI~eIFaee  236 (261)
                      |+-=-..+..+|+|.++.++++.|+|||.++-..|..+   |-   -.+-+.+|++|... .+.+++...
T Consensus        45 ~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~-~l~~~~~~~  113 (237)
T d1gkub1          45 RAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAE-TIRKYAEKA  113 (237)
T ss_dssp             CHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHH-HHHHHHTTT
T ss_pred             CHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHH-HHHHHHHHc
Confidence            56556667889999999999999999999988777543   22   24577889988773 355555443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.11  E-value=0.021  Score=47.80  Aligned_cols=28  Identities=11%  Similarity=0.100  Sum_probs=23.4

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .-+|.-+-|+|++|+||||+.+.|+..+
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456668899999999999999998654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.04  E-value=0.03  Score=41.67  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.1

Q ss_pred             CceEEEEecCCCchhHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      -.+|.+||++|+||||+...|.
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEEECCCCCCHHHHHHHHh
Confidence            3579999999999999988774

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.98  E-value=0.034  Score=43.31  Aligned_cols=27  Identities=11%  Similarity=0.142  Sum_probs=23.6

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      -+|..+.|.|++|+|||+++..+|...
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            346679999999999999999998875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.98  E-value=0.032  Score=46.90  Aligned_cols=43  Identities=21%  Similarity=0.172  Sum_probs=28.8

Q ss_pred             HHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCCccCcHHHHHH
Q 024881          178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (261)
Q Consensus       178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~fvDTDeLIEq  223 (261)
                      .-+.+.|+|...+|+|.+|.||||+-..|...   .-+-|.++-++
T Consensus        87 ~~L~~~l~~kt~~~~G~SGVGKSTLiN~L~~~---~~~~T~~vs~~  129 (225)
T d1u0la2          87 EELKEYLKGKISTMAGLSGVGKSSLLNAINPG---LKLRVSEVSEK  129 (225)
T ss_dssp             HHHHHHHSSSEEEEECSTTSSHHHHHHHHSTT---CCCC-------
T ss_pred             hhHHHHhcCCeEEEECCCCCCHHHHHHhhcch---hhhhccCcccc
Confidence            44677899999999999999999998888543   33444444443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.89  E-value=0.054  Score=44.73  Aligned_cols=42  Identities=12%  Similarity=0.053  Sum_probs=34.3

Q ss_pred             chhHHHHHHHhhcC-CceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          172 SWESLTAGSMQLLK-GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       172 ~We~l~~g~~~lLk-G~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      +|..+.+-+..+-+ +.+|+|.|.+|+||+.+|+.|.....+.
T Consensus         8 ~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~   50 (247)
T d1ny5a2           8 KMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS   50 (247)
T ss_dssp             HHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCc
Confidence            47777777777654 6789999999999999999998766554

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.88  E-value=0.029  Score=42.16  Aligned_cols=21  Identities=14%  Similarity=0.215  Sum_probs=19.1

Q ss_pred             CceEEEEecCCCchhHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALEL  206 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~L  206 (261)
                      -..|.|+|++|+||||+...+
T Consensus         2 ~iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHH
Confidence            457999999999999999988

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.84  E-value=0.033  Score=43.07  Aligned_cols=29  Identities=17%  Similarity=0.107  Sum_probs=23.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .+-+|.-+.|.|++|+|||+.|-.+|...
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35566779999999999999999887653

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.81  E-value=0.015  Score=51.33  Aligned_cols=26  Identities=8%  Similarity=-0.037  Sum_probs=20.9

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCC
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY  212 (261)
                      +.|||-|..|+||||+++.||+.++.
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC----
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            46999999999999999999999864

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.03  Score=44.72  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=26.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHhc---CCCc--cCcH
Q 024881          188 SIFLVGDSTEVNEKVALELAVGL---GYTP--LSTK  218 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~L---gY~f--vDTD  218 (261)
                      =|++.|==|.||||++..||..|   ||+.  +|+|
T Consensus        10 ~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            38899999999999999999888   8865  6777

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.61  E-value=0.028  Score=42.20  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             CCceEEEEecCCCchhHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      |..+|.|+|+.|+||||+-+.|.
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.032  Score=41.56  Aligned_cols=25  Identities=8%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHh
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      |--.|.|||+.|+|||++...+...
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhC
Confidence            3347999999999999999988764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.48  E-value=0.038  Score=41.14  Aligned_cols=22  Identities=9%  Similarity=0.175  Sum_probs=19.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .+|.|||+.|+||||+...|..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999988875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.037  Score=41.20  Aligned_cols=23  Identities=9%  Similarity=0.215  Sum_probs=20.3

Q ss_pred             CceEEEEecCCCchhHHHHHHHH
Q 024881          186 GTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ...|.|+|+.|+|||++-..|..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            45799999999999999988875

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.33  E-value=0.025  Score=43.94  Aligned_cols=34  Identities=9%  Similarity=0.133  Sum_probs=26.7

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHH
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALEL  206 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~L  206 (261)
                      |+.=...+..+++|.++.++++.|+|||+++...
T Consensus        27 ~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~   60 (202)
T d2p6ra3          27 FPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMA   60 (202)
T ss_dssp             CCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHH
Confidence            3333555677888999999999999999987543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.28  E-value=0.018  Score=50.07  Aligned_cols=32  Identities=16%  Similarity=0.187  Sum_probs=23.6

Q ss_pred             EEEEecCCCchhHHHHHHHHhc---CCC--ccCcHHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGL---GYT--PLSTKEL  220 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L---gY~--fvDTDeL  220 (261)
                      |-+.|.+|||||||++.|++.|   |+.  .++.|..
T Consensus         7 IgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             EEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             EEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            7899999999999999999876   444  6777765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.21  E-value=0.036  Score=41.39  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ||-.+|.|||+.|+||||+-+.|..
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHh
Confidence            4556799999999999999998875

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.17  E-value=0.041  Score=39.92  Aligned_cols=46  Identities=11%  Similarity=0.032  Sum_probs=36.2

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCcc---CcHHHHHHHhCCCHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGLGYTPL---STKELLETFAKQTIDSWM  233 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~LgY~fv---DTDeLIEq~agkSI~eIF  233 (261)
                      ....|+++.|+|||+++-.++...|++.+   .+..|.+|.. +.+.+.|
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~~~l~~q~~-~~~~~~~   57 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFG-AYMSKAH   57 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESCHHHHHHHH-HHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcChHHHHHHHH-HHHHHHh
Confidence            45789999999999999998999998754   7788888876 3344444

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.04  Score=41.04  Aligned_cols=22  Identities=9%  Similarity=0.125  Sum_probs=19.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.|||++|+|||++.+.+...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999888753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.11  E-value=0.037  Score=41.02  Aligned_cols=21  Identities=10%  Similarity=0.327  Sum_probs=18.8

Q ss_pred             ceEEEEecCCCchhHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      +.|.|||+.|+|||++-+.+-
T Consensus         3 ~KivllG~~~vGKTsl~~r~~   23 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            579999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.11  E-value=0.045  Score=40.35  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.|||+.|+||||+...+...
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.07  E-value=0.041  Score=42.30  Aligned_cols=23  Identities=17%  Similarity=0.301  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +||.|+|.+|+||||+-..|...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            48999999999999999888763

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.00  E-value=0.046  Score=40.94  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.+||+.|+||||+-..|...
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4899999999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.98  E-value=0.044  Score=40.76  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.|+|.+|+||||+...|...
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999988764

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=91.90  E-value=0.66  Score=35.26  Aligned_cols=81  Identities=12%  Similarity=0.181  Sum_probs=55.9

Q ss_pred             CceEEcccCceEEEEEecCCcccccccceEEEeeCCE-EEEEEccCCcce----eee----------ecccccCCCCCCc
Q 024881           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTC-LTVRVNRSGSFI----TLI----------ETNQLFDKIKPTE  143 (261)
Q Consensus        79 ~~Y~wTqtl~EvEvrlpl~~~~~~~skDv~Vd~~~~s-L~V~vk~~~~~~----tlI----------d~g~L~~kIk~~E  143 (261)
                      ....+.++-.+..|++.||+   .+..||.|+++++. |.|.-+......    ..+          -+=.|++.|.++.
T Consensus        43 p~~dv~e~~~~~~i~~~lPG---~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~  119 (150)
T d1gmea_          43 ARMDWKETPEAHVFKADLPG---VKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEE  119 (150)
T ss_dssp             GCEEEEECSSEEEEEEECTT---CCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGG
T ss_pred             CceeEEECCCEEEEEEEeCC---CccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeece
Confidence            36788999999999999998   57789999998754 666654332110    000          0112566776665


Q ss_pred             eeeEEecCeEEEEEEecCC
Q 024881          144 TIWYIDEDQLVINLKKQDP  162 (261)
Q Consensus       144 t~W~IdD~~lvv~L~K~d~  162 (261)
                      -.=.++|..|.|.|.|...
T Consensus       120 i~A~~~nGvL~I~lpK~~~  138 (150)
T d1gmea_         120 VKAGLENGVLTVTVPKAEV  138 (150)
T ss_dssp             CEEEEETTEEEEEEECCCC
T ss_pred             eEEEEECCEEEEEEEcCCc
Confidence            4445789999999999765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.049  Score=40.59  Aligned_cols=21  Identities=14%  Similarity=0.300  Sum_probs=19.1

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|||+.|+|||++.+.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.88  E-value=0.039  Score=41.59  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=19.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      +-..|.|||++|+||||+-+.|.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            34579999999999999887663

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.87  E-value=0.034  Score=38.92  Aligned_cols=20  Identities=15%  Similarity=-0.006  Sum_probs=17.6

Q ss_pred             cCCceEEEEecCCCchhHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVA  203 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVG  203 (261)
                      -+|.+..|++.+|+|||.++
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            36899999999999999766

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.049  Score=40.94  Aligned_cols=21  Identities=14%  Similarity=0.271  Sum_probs=18.8

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.+||+.|+|||++...+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            589999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.04  Score=41.85  Aligned_cols=24  Identities=13%  Similarity=0.194  Sum_probs=20.8

Q ss_pred             CceEEEEecCCCchhHHHHHHHHh
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ...|.|||+.|+|||++-+.|...
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999888764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.058  Score=40.31  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=19.9

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.|+|+.|+||||+-+.|...
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5999999999999999998863

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.061  Score=39.69  Aligned_cols=21  Identities=5%  Similarity=0.219  Sum_probs=19.0

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.+||+.|+|||++.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.35  E-value=0.066  Score=40.62  Aligned_cols=50  Identities=20%  Similarity=0.104  Sum_probs=35.1

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHHhc----CCC---ccCcHHHHHHHhCCCHHHHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAVGL----GYT---PLSTKELLETFAKQTIDSWM  233 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~~L----gY~---fvDTDeLIEq~agkSI~eIF  233 (261)
                      .+++.|..++++.|+|||.++-.+|...    |.+   .+.+..|++|.. +.+.++|
T Consensus        20 ~~~~~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~-~~~~~~~   76 (200)
T d1wp9a1          20 KCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHA-ESFRRLF   76 (200)
T ss_dssp             HGGGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHH-HHHHHHB
T ss_pred             HHhcCCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCchHHHHHHH-HHHHHhh
Confidence            3456789999999999999888777532    332   347788888855 3444554

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.32  E-value=0.053  Score=44.61  Aligned_cols=25  Identities=8%  Similarity=0.147  Sum_probs=21.5

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ....+|.|+|..|+||||++-.|..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            3557999999999999999988863

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.32  E-value=0.066  Score=39.68  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.5

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|++||+.|+||||+...|...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4999999999999999988653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.067  Score=39.96  Aligned_cols=21  Identities=10%  Similarity=0.254  Sum_probs=19.4

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|||+.|+|||++-+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            599999999999999998876

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.062  Score=40.45  Aligned_cols=22  Identities=9%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ..|.|||+.|+|||++.+.|..
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999988775

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.063  Score=41.09  Aligned_cols=26  Identities=12%  Similarity=0.050  Sum_probs=22.6

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +-+|.-+.|.|.+|+|||++|..+|.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44677899999999999999998885

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.16  E-value=0.033  Score=47.06  Aligned_cols=31  Identities=10%  Similarity=0.140  Sum_probs=25.3

Q ss_pred             HHhhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       180 ~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      +.+.|+|...+|+|.+|.||||+-..|...+
T Consensus        91 L~~~l~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          91 IIPHFQDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TGGGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             HHHhhccceEEEECCCCccHHHHHHhhccHh
Confidence            4577899999999999999999988885443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.07  Score=39.84  Aligned_cols=21  Identities=5%  Similarity=0.181  Sum_probs=18.7

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|+|..|+||||+...|..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            499999999999999888764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.071  Score=40.04  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=19.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.+||+.|+|||++...+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999888764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.08  E-value=0.069  Score=39.63  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=19.2

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      +|.|||.+|+||||+...|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.07  E-value=0.084  Score=39.67  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=20.8

Q ss_pred             hcCCceEEEEecCCCchhHHHHHHH
Q 024881          183 LLKGTSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       183 lLkG~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      +-+|.-+.|.|++|+|||+++..+|
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            3367789999999999999997654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.06  Score=40.64  Aligned_cols=21  Identities=14%  Similarity=0.169  Sum_probs=18.9

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|||..|+||||+.+.|..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            599999999999999988864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.039  Score=40.37  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.0

Q ss_pred             CCceEEEEecCCCchhHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALEL  206 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~L  206 (261)
                      +...|.|||.+++||||+-..|
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L   36 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTL   36 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHH
Confidence            3567999999999999988776

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.01  E-value=0.064  Score=40.80  Aligned_cols=20  Identities=25%  Similarity=0.179  Sum_probs=18.8

Q ss_pred             eEEEEecCCCchhHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA  207 (261)
                      .|.|||.+|+||||+-..|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            59999999999999999986

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.86  E-value=0.077  Score=39.34  Aligned_cols=23  Identities=9%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..|.|+|+.|+|||++-+.+...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999655

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.75  E-value=0.064  Score=42.60  Aligned_cols=29  Identities=28%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       182 ~lLkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .++.|.-..|+|..|+|||+++..||..+
T Consensus        25 G~~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          25 NMVAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35778778899999999999999988764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.66  E-value=0.063  Score=46.42  Aligned_cols=26  Identities=8%  Similarity=0.133  Sum_probs=23.2

Q ss_pred             CCceEEEEecCCCchhHHHHHHHHhc
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      .|.||.++|.+||||||..+.|+..+
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhc
Confidence            45689999999999999999998766

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.58  E-value=0.073  Score=39.85  Aligned_cols=21  Identities=14%  Similarity=0.169  Sum_probs=18.1

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|+|+.|+|||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            488999999999998887753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.48  E-value=0.075  Score=39.50  Aligned_cols=23  Identities=13%  Similarity=0.352  Sum_probs=19.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..|.+||+.|+|||++...+...
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36999999999999998877643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.46  E-value=0.073  Score=39.78  Aligned_cols=24  Identities=8%  Similarity=0.093  Sum_probs=20.8

Q ss_pred             CCceEEEEecCCCchhHHHHHHHH
Q 024881          185 KGTSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       185 kG~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ++.+|.++|..|+||||+...|..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            356899999999999999988864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.088  Score=40.12  Aligned_cols=22  Identities=18%  Similarity=0.202  Sum_probs=19.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +|.|||+.|+|||++-+.|...
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5999999999999999888764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=90.40  E-value=0.067  Score=40.85  Aligned_cols=30  Identities=10%  Similarity=0.062  Sum_probs=23.5

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhcCCC
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~LgY~  213 (261)
                      +|..||-+||...+||||+-..|...-+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~   32 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTS   32 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC---
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCce
Confidence            566799999999999999999997544443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.083  Score=39.55  Aligned_cols=23  Identities=4%  Similarity=0.133  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..|.|||+.|+|||++-+.+...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999988864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.087  Score=39.28  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=19.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.+||+.|+|||++.+.|...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999998854

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.079  Score=40.49  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=19.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      ..|.|+|+.|+|||++.+.+...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999998887653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.084  Score=39.15  Aligned_cols=21  Identities=10%  Similarity=0.172  Sum_probs=18.7

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|||+.|+||||+-..+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999887765

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.10  E-value=0.087  Score=39.56  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=18.9

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.+||+.|+||||+...+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            499999999999999988765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=90.10  E-value=0.097  Score=41.80  Aligned_cols=37  Identities=11%  Similarity=0.107  Sum_probs=27.1

Q ss_pred             hhHHHHHHHhhcCCceEEEEecCCCchhHHHHHHHHh
Q 024881          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       173 We~l~~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      |+.|-.-+..+-+|.-+.|.|.+|+|||+++..+|..
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            4444433334567877899999999999998888854

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.93  E-value=0.096  Score=38.84  Aligned_cols=21  Identities=14%  Similarity=0.229  Sum_probs=18.7

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|||+.|+||||+...|..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999988764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.84  E-value=0.11  Score=38.59  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      -.|.|||+.|+|||++...|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999988875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.60  E-value=0.1  Score=38.80  Aligned_cols=22  Identities=9%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.|||+.|+|||++.+.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6999999999999999988754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.53  E-value=0.094  Score=39.01  Aligned_cols=21  Identities=14%  Similarity=0.256  Sum_probs=18.8

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|+|..|+||||+-+.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999998863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.46  E-value=0.1  Score=39.41  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=19.1

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|+|..|+||||+...|..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.45  E-value=0.089  Score=39.50  Aligned_cols=22  Identities=14%  Similarity=0.045  Sum_probs=19.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.|||..|+||||+.+.|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4999999999999999998753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.38  E-value=0.083  Score=44.34  Aligned_cols=35  Identities=14%  Similarity=0.212  Sum_probs=29.4

Q ss_pred             HHHHHhhcCCc----eEEEEecCCCchhHHHHHHHHhcC
Q 024881          177 TAGSMQLLKGT----SIFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       177 ~~g~~~lLkG~----sIyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      ..-+...|+|+    -|+|+|+.++|||..+..|++.|+
T Consensus        40 l~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          40 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            34556677777    399999999999999999999995

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.11  Score=39.04  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             ceEEEEecCCCchhHHHHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      ..|.++|+.|+|||++-+.|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.37  E-value=0.11  Score=38.96  Aligned_cols=21  Identities=14%  Similarity=0.308  Sum_probs=19.2

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|||+.|+|||++...++.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998876

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.36  E-value=0.061  Score=40.39  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=9.3

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|||.+|+||||+.+.|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999887764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.23  E-value=0.052  Score=39.52  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=19.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +|.|+|.+++||||+-..|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.12  Score=38.44  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.4

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.++|+.|+|||++.+.+...
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999888663

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.13  Score=38.40  Aligned_cols=21  Identities=14%  Similarity=0.246  Sum_probs=18.9

Q ss_pred             EEEEecCCCchhHHHHHHHHh
Q 024881          189 IFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~  209 (261)
                      |.|||+.|+||||+...+...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999888763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.01  E-value=0.11  Score=39.04  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.6

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      +|.|||.+++||||+-..|..+
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999888754

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.96  E-value=0.1  Score=45.04  Aligned_cols=66  Identities=14%  Similarity=0.179  Sum_probs=37.5

Q ss_pred             EEEEecCCCchhHHHHHHHHhc--------CCCccCcHHH---H---HHHhCC-CHHHHHHhhCchhHHhhH--HHHHHH
Q 024881          189 IFLVGDSTEVNEKVALELAVGL--------GYTPLSTKEL---L---ETFAKQ-TIDSWMLAEGSDSVVNGE--CDVLES  251 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L--------gY~fvDTDeL---I---Eq~agk-SI~eIFaeeGE~~FRelE--s~VLee  251 (261)
                      |-|-|..||||||+++.|.+.|        .-..++.|+.   -   ++.+.+ .-..++..-|.++=-+++  .++|.+
T Consensus        30 IGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~~ll~~~l~~  109 (286)
T d1odfa_          30 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNT  109 (286)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhHHHHHHHHHH
Confidence            5567999999999999887765        2234566665   1   122211 012234444555544544  466666


Q ss_pred             Hhc
Q 024881          252 LIM  254 (261)
Q Consensus       252 ls~  254 (261)
                      |.+
T Consensus       110 l~~  112 (286)
T d1odfa_         110 IFN  112 (286)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=0.068  Score=40.22  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=17.5

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.+||+.|+|||++-..+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999876644

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=88.49  E-value=0.21  Score=43.85  Aligned_cols=39  Identities=13%  Similarity=0.057  Sum_probs=28.5

Q ss_pred             hhHHHHHHHhhcCCce--EEEEecCCCchhHHHHHHHHhcC
Q 024881          173 WESLTAGSMQLLKGTS--IFLVGDSTEVNEKVALELAVGLG  211 (261)
Q Consensus       173 We~l~~g~~~lLkG~s--IyLVGmmGsGKSTVGr~LA~~Lg  211 (261)
                      -+...+-+.+++...+  |.+.|++||||||+...+-..+.
T Consensus       143 ~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         143 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4555555555553333  99999999999999998888773

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=0.13  Score=38.65  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=18.6

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|||+.|+|||++...+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999888764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.42  E-value=0.15  Score=38.76  Aligned_cols=22  Identities=27%  Similarity=0.252  Sum_probs=19.7

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.|+|+.|+|||++.+.+...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999888764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=87.90  E-value=0.16  Score=38.01  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=18.9

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|+|+.|+||||+.+.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988875

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.74  E-value=0.27  Score=39.86  Aligned_cols=43  Identities=21%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             ccchhHHHHHHHhhcC--Cce-------EEEEecCCCchhHHHHHHHHhcCCCcc
Q 024881          170 VESWESLTAGSMQLLK--GTS-------IFLVGDSTEVNEKVALELAVGLGYTPL  215 (261)
Q Consensus       170 ~e~We~l~~g~~~lLk--G~s-------IyLVGmmGsGKSTVGr~LA~~LgY~fv  215 (261)
                      ||.|=.++..+.+.|+  |.+       |.+||.+.+||||+-..|.   |..++
T Consensus         1 ~~~~~~~~~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLl---g~~~l   52 (299)
T d2akab1           1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFV---GRDFL   52 (299)
T ss_dssp             CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHH---TSCCS
T ss_pred             CHhHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHh---CCCcC
Confidence            5566667777754433  222       8999999999999999985   55543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.74  E-value=0.1  Score=39.16  Aligned_cols=20  Identities=15%  Similarity=0.187  Sum_probs=18.3

Q ss_pred             eEEEEecCCCchhHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA  207 (261)
                      +|-|||.+++||||+...|.
T Consensus         3 ~VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999998884

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.55  E-value=0.14  Score=40.49  Aligned_cols=20  Identities=10%  Similarity=0.335  Sum_probs=18.4

Q ss_pred             eEEEEecCCCchhHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA  207 (261)
                      .|.|+|+.|+||||+.+.+.
T Consensus         8 KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999885

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.38  E-value=0.17  Score=40.71  Aligned_cols=19  Identities=5%  Similarity=0.190  Sum_probs=16.0

Q ss_pred             ceEEEEecCCCchhHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALE  205 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~  205 (261)
                      .++.+.|..|||||||.-.
T Consensus        25 g~~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHH
Confidence            3588999999999998744

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.31  E-value=0.26  Score=39.19  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=24.9

Q ss_pred             cCCceEEEEecCCCchhHHHHHHHHhc
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      =.|.++.|.|.+|+||+++++.||..+
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            368899999999999999999999876

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.09  E-value=0.16  Score=40.96  Aligned_cols=22  Identities=9%  Similarity=-0.034  Sum_probs=18.1

Q ss_pred             EEEEecCCCchhHHHHHHHHhc
Q 024881          189 IFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       189 IyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ..+.|+-||||||+-+.|.+..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEeeCCCCCHHHHHHHHHhcC
Confidence            4567999999999998887753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.99  E-value=0.15  Score=40.45  Aligned_cols=19  Identities=5%  Similarity=0.123  Sum_probs=15.7

Q ss_pred             ceEEEEecCCCchhHHHHH
Q 024881          187 TSIFLVGDSTEVNEKVALE  205 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~  205 (261)
                      .++.++|..|||||||.-.
T Consensus        15 ~~~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHH
Confidence            4588999999999998643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=86.94  E-value=0.18  Score=42.65  Aligned_cols=24  Identities=17%  Similarity=0.188  Sum_probs=19.1

Q ss_pred             cCCceEEEEecCCCchhHHHHHHH
Q 024881          184 LKGTSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       184 LkG~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      ..-+|++++|.+|+|||+..+.|.
T Consensus        48 ~~~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          48 AEPRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGGGCEEEEECTTSSHHHHHHHHH
T ss_pred             cccceEEEEeCCCCcHHHHHHHHH
Confidence            334689999999999999876443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.53  E-value=0.23  Score=38.01  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.3

Q ss_pred             eEEEEecCCCchhHHHHHHHHh
Q 024881          188 SIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .|.++|..|+||||+...|...
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            4899999999999999888753

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=85.95  E-value=0.35  Score=37.03  Aligned_cols=48  Identities=13%  Similarity=-0.070  Sum_probs=37.3

Q ss_pred             HHHHhhcCCceEEEEecCCCchhHHHHHHHHhcCCC---ccCcHHHHHHHh
Q 024881          178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFA  225 (261)
Q Consensus       178 ~g~~~lLkG~sIyLVGmmGsGKSTVGr~LA~~LgY~---fvDTDeLIEq~a  225 (261)
                      +.+...++|.|+.++-+.|+|||-++...+...+-.   .+.+..|.++..
T Consensus        32 ~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~~~~~~~v~P~~~L~~q~~   82 (206)
T d1oywa2          32 EIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQV   82 (206)
T ss_dssp             HHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhccCceEEeccchhhhhhHH
Confidence            345567889999999999999999987777665544   566777777765

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.83  E-value=0.22  Score=36.60  Aligned_cols=21  Identities=19%  Similarity=0.105  Sum_probs=18.8

Q ss_pred             eEEEEecCCCchhHHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELAV  208 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA~  208 (261)
                      .|.|+|.+++||||+-..|-.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999999964

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=85.44  E-value=0.31  Score=42.45  Aligned_cols=28  Identities=11%  Similarity=0.085  Sum_probs=22.0

Q ss_pred             HHHhhcCCceEEEEecCCCchhHHHHHH
Q 024881          179 GSMQLLKGTSIFLVGDSTEVNEKVALEL  206 (261)
Q Consensus       179 g~~~lLkG~sIyLVGmmGsGKSTVGr~L  206 (261)
                      .+...|.+.-.+|.|.+|+||||+...+
T Consensus       156 A~~~al~~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         156 AAAVALTRRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             HHHHHHTBSEEEEECCTTSTHHHHHHHH
T ss_pred             HHHHHHcCCeEEEEcCCCCCceehHHHH
Confidence            4455667777999999999999987554

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.32  E-value=0.24  Score=37.86  Aligned_cols=23  Identities=13%  Similarity=0.245  Sum_probs=20.0

Q ss_pred             ceEEEEecCCCchhHHHHHHHHh
Q 024881          187 TSIFLVGDSTEVNEKVALELAVG  209 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~  209 (261)
                      .+|.++|+.|+|||++...+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999877653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.90  E-value=0.35  Score=42.36  Aligned_cols=35  Identities=11%  Similarity=0.083  Sum_probs=27.2

Q ss_pred             hhHHHHHHHhhcC-----CceEEEEecCCCchhHHHHHHH
Q 024881          173 WESLTAGSMQLLK-----GTSIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       173 We~l~~g~~~lLk-----G~sIyLVGmmGsGKSTVGr~LA  207 (261)
                      ++.+...+.+.|+     ..+|.++|.+|+||||+...|-
T Consensus        38 ~~~~~~~i~~~l~~~~~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          38 IQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCcEEEEECCCCCCHHHHHHHHh
Confidence            4555556655554     5789999999999999998884

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=84.21  E-value=0.32  Score=41.98  Aligned_cols=25  Identities=8%  Similarity=0.007  Sum_probs=21.1

Q ss_pred             CceEEEEecCCCchhHHHHHHHHhc
Q 024881          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       186 G~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ...|-++|.+|+||||+-..|+..+
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3359999999999999999988654

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.18  E-value=0.47  Score=37.93  Aligned_cols=39  Identities=21%  Similarity=0.407  Sum_probs=30.4

Q ss_pred             CCcccccchhH------HHH----------------HHHhhcCCceEEEEecCCCchhHHH
Q 024881          165 KWPDIVESWES------LTA----------------GSMQLLKGTSIFLVGDSTEVNEKVA  203 (261)
Q Consensus       165 ~Wp~~~e~We~------l~~----------------g~~~lLkG~sIyLVGmmGsGKSTVG  203 (261)
                      +||.++.||+.      +.+                .+..+|+|.++.+....|||||-.-
T Consensus         6 ~~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlay   66 (218)
T d2g9na1           6 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF   66 (218)
T ss_dssp             CCCCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHH
T ss_pred             CCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhh
Confidence            57777778873      333                3457899999999999999999765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=82.05  E-value=0.26  Score=36.85  Aligned_cols=20  Identities=15%  Similarity=0.089  Sum_probs=18.2

Q ss_pred             eEEEEecCCCchhHHHHHHH
Q 024881          188 SIFLVGDSTEVNEKVALELA  207 (261)
Q Consensus       188 sIyLVGmmGsGKSTVGr~LA  207 (261)
                      .|-|||.+++||||+-..|.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSE
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            58899999999999999884

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.67  E-value=0.44  Score=41.00  Aligned_cols=24  Identities=13%  Similarity=-0.038  Sum_probs=20.8

Q ss_pred             ceEEEEecCCCchhHHHHHHHHhc
Q 024881          187 TSIFLVGDSTEVNEKVALELAVGL  210 (261)
Q Consensus       187 ~sIyLVGmmGsGKSTVGr~LA~~L  210 (261)
                      ..|=++|.+|+||||+--.|++.+
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHH
Confidence            348999999999999999988764

>d1j33a_ c.39.1.1 (A:) Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
superfamily: Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
family: Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
domain: Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
species: Thermus thermophilus [TaxId: 274]

Probab=81.53  E-value=2.5  Score=37.15  Aligned_cols=47  Identities=28%  Similarity=0.386  Sum_probs=39.1

Q ss_pred             ccchhHHHHHHH----hhcCCceEEEEecCCCchhHHHHHHHHhc-CCCccC
Q 024881          170 VESWESLTAGSM----QLLKGTSIFLVGDSTEVNEKVALELAVGL-GYTPLS  216 (261)
Q Consensus       170 ~e~We~l~~g~~----~lLkG~sIyLVGmmGsGKSTVGr~LA~~L-gY~fvD  216 (261)
                      .|...++-.|..    ..=+|.+++.+|.||-||||.+..+...| |..+-|
T Consensus       132 ~e~~~al~~G~~~a~~~~~~G~~ll~~GEmGiGNTT~AaAi~~aL~g~~~~~  183 (333)
T d1j33a_         132 EEAERALLAGREAARRAIAEGATLLAAGDMGIGNTTAAAALTAALLGLPPEA  183 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEEEEEEECTTHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEeccccCCccHHHHHHHHHHhCcCHHH
Confidence            566888888886    45689999999999999999999988886 766544