Citrus Sinensis ID: 024906

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE
cccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEccEEEEEEEEccccccccccccccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHccccccccEEEEEEEEEccEEEEccccHHHHcccccEEEEEEcccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccHHccccccccHHHHHHccHHHHHHHHHHccccccccccccccEEEEEEcEccccccEEEEEEcccEEEEEEEcccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHccccccHcccccEEEEEEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEEEEccEEEEcccccHHccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccc
maakpsttttakatyspidptrktrppifsgsdvdwlrpdsrgfhqcrpaffrtgavnsasgsayaefgnTKVIVSVfgpreskkammysnigrlncnvsyttfatpvrgqgsdhkdFSSMLHKALEGAIiletfpktTVDVFALVLesggsdlpvVISCASVALADAGIMMYDLVASVSVSClgknllidpvleeesyqdgslmiacmpsryevtqltvtgewstphfNEAMQLCLDASAKLGKIMRSCLKEAASDEQE
maakpsttttakatyspidptrktrppifsgsdvdWLRPDSRGFHQCRPAFFRTGAVNSASgsayaefgntKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE
MaakpsttttakatyspIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE
********************************DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ*****DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSC**********
*************************************RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG***************LNCNVSY*********************HKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSC**********
*************TYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL*********
****PSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q6P0I8271 Exosome complex component yes no 0.911 0.874 0.367 2e-37
Q8U0L9250 Probable exosome complex yes no 0.85 0.884 0.342 2e-30
O59223249 Probable exosome complex yes no 0.85 0.887 0.337 3e-30
O26779240 Probable exosome complex yes no 0.834 0.904 0.316 7e-30
Q9V119249 Probable exosome complex yes no 0.85 0.887 0.337 1e-29
B6YSI2249 Probable exosome complex yes no 0.85 0.887 0.328 4e-29
Q5JIR6249 Probable exosome complex yes no 0.880 0.919 0.321 8e-29
C5A2B9249 Probable exosome complex yes no 0.880 0.919 0.321 1e-28
Q97BZ5248 Probable exosome complex yes no 0.834 0.875 0.312 6e-28
Q28F19270 Exosome complex component yes no 0.823 0.792 0.375 1e-27
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2 Back     alignment and function desciption
 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/261 (36%), Positives = 142/261 (54%), Gaps = 24/261 (9%)

Query: 17  PIDPTRKTRPPIFSGSDVDWLRPDS-----------RGFHQCRPAFFRTGAVNSASGSAY 65
           P+D T++ R P  S S + +L PD            RG    RP F R G V+ A GSAY
Sbjct: 2   PVD-TKRIRGPEESQSPLLFLSPDKAPKAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAY 60

Query: 66  AEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSM 121
            E GNTK+I SV+GP+E+ ++       GRL C+     F+   RG   QGS+ +D S+ 
Sbjct: 61  IEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSAT 120

Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
           L ++L   + L  +P++ +DV  +VLE+ GS L   ++CAS+ALADAGI MYD+V   ++
Sbjct: 121 LMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTL 180

Query: 182 SCLGKNLLIDPVLEEE--SYQD------GSLMIACMPSRYEVTQLTVTGEWSTPHFNEAM 233
              G   L+DP   EE  S+Q+      G + +A +P+  +V+ L   GE       EAM
Sbjct: 181 RQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALLPNLNQVSGLNADGEMREDTLTEAM 240

Query: 234 QLCLDASAKLGKIMRSCLKEA 254
           + C+D   KL  +++  L  A
Sbjct: 241 RTCMDGCHKLYPVVQQALTRA 261
Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events.
Danio rerio (taxid: 7955)
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1568 PE=3 SV=1 Back     alignment and function description
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1549 PE=3 SV=1 Back     alignment and function description
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1 Back     alignment and function description
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1 Back     alignment and function description
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=TON_0030 PE=3 SV=1 Back     alignment and function description
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3 SV=1 Back     alignment and function description
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_2036 PE=3 SV=1 Back     alignment and function description
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=TV0310 PE=3 SV=1 Back     alignment and function description
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
356539380255 PREDICTED: exosome complex component MTR 0.973 0.992 0.816 1e-119
357472161258 Exosome complex exonuclease MTR3 [Medica 0.980 0.988 0.807 1e-119
356542629254 PREDICTED: exosome complex component MTR 0.976 1.0 0.815 1e-118
449456022258 PREDICTED: exosome complex component MTR 0.9 0.906 0.858 1e-118
224106782257 predicted protein [Populus trichocarpa] 0.892 0.902 0.866 1e-117
225435349254 PREDICTED: exosome complex component MTR 0.976 1.0 0.796 1e-117
224132514263 predicted protein [Populus trichocarpa] 0.919 0.908 0.824 1e-116
118489169257 unknown [Populus trichocarpa x Populus d 0.892 0.902 0.857 1e-116
388499452253 unknown [Lotus japonicus] 0.973 1.0 0.796 1e-116
118487722257 unknown [Populus trichocarpa] 0.892 0.902 0.857 1e-116
>gi|356539380|ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max] Back     alignment and taxonomy information
 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/262 (81%), Positives = 228/262 (87%), Gaps = 9/262 (3%)

Query: 1   MAAKPSTTTTAKATYSPIDPT--RKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN 58
           MA K   T    ATYSP  PT  RK +PPIF     DW+RPD RGFHQCRPAFFRTGAVN
Sbjct: 1   MAGKGGAT---PATYSP-SPTTNRKKKPPIFKE---DWVRPDGRGFHQCRPAFFRTGAVN 53

Query: 59  SASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDF 118
           +ASGSAYAEFGNTKVIVSVFGPRESKKAMMYS+IGRLNCNVS+TTFATP+RGQGSDHK++
Sbjct: 54  AASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEY 113

Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVAS 178
            +MLHKALEGAIILETFPKTTVDVFALVLES GSDLPVVISCAS+ALADAGIMMYD+VAS
Sbjct: 114 CAMLHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDIVAS 173

Query: 179 VSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLD 238
           VSVSC  KNL+IDP+LEEE  QDGSLMI CMPSRYE+TQLTVTGEWST   NE MQLCLD
Sbjct: 174 VSVSCFNKNLVIDPILEEEIGQDGSLMITCMPSRYEITQLTVTGEWSTTKINEGMQLCLD 233

Query: 239 ASAKLGKIMRSCLKEAASDEQE 260
           A AKL KIMRSCLKE ASD QE
Sbjct: 234 ACAKLAKIMRSCLKEVASDSQE 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357472161|ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula] gi|355507420|gb|AES88562.1| Exosome complex exonuclease MTR3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356542629|ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max] Back     alignment and taxonomy information
>gi|449456022|ref|XP_004145749.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus] gi|449531263|ref|XP_004172607.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa] gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435349|ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera] gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera] gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa] gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|388499452|gb|AFK37792.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:2124024256 RRP41L "AT4G27490" [Arabidopsi 0.915 0.929 0.773 7.9e-101
ZFIN|ZDB-GENE-050522-362271 exosc6 "exosome component 6" [ 0.903 0.867 0.366 5.8e-34
UNIPROTKB|Q28F19270 exosc6 "Exosome complex compon 0.819 0.788 0.376 8.8e-31
RGD|1309832272 Exosc6 "exosome component 6" [ 0.892 0.852 0.333 2.5e-26
MGI|MGI:1919794273 Exosc6 "exosome component 6" [ 0.9 0.857 0.324 3.2e-26
UNIPROTKB|Q5RKV6272 EXOSC6 "Exosome complex compon 0.888 0.849 0.335 9.7e-25
FB|FBgn0032487246 Ski6 "Ski6" [Drosophila melano 0.823 0.869 0.288 7.8e-23
UNIPROTKB|F1S435254 EXOSC6 "Uncharacterized protei 0.838 0.858 0.328 1.3e-22
TAIR|locus:2076710241 RRP41 "AT3G61620" [Arabidopsis 0.834 0.900 0.310 1.3e-22
ZFIN|ZDB-GENE-040426-1702245 exosc4 "exosome component 4" [ 0.830 0.881 0.288 1.5e-21
TAIR|locus:2124024 RRP41L "AT4G27490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 184/238 (77%), Positives = 215/238 (90%)

Query:    23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
             ++R PIF  SD+DW RPD RGFHQCRPA  +TGAV+SASGSAYAEFGNTKVIVSVFGPRE
Sbjct:    19 RSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE 78

Query:    83 SKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
             SKKAM+YS++GRLNCNVSYT FA+P  GQG+DHK++SSMLHKALEG I++ETFPKTTVDV
Sbjct:    79 SKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLHKALEGVIMMETFPKTTVDV 138

Query:   143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
             FALVLESGGSDL V+ISCAS+ALADAGIMMYDL+ +VSVSC+GK+L+IDPV EEE  +DG
Sbjct:   139 FALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDG 198

Query:   203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
             S M+ CMPSRYE+TQLT+TGEW+TP+ NEAMQLCLDAS+KLG+IMR CLK++AS   E
Sbjct:   199 SFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQSASASDE 256
GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS
GO:0003723 "RNA binding" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006396 "RNA processing" evidence=ISS
GO:0009909 "regulation of flower development" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0005634 "nucleus" evidence=IDA
GO:0008408 "3'-5' exonuclease activity" evidence=IMP
GO:0009845 "seed germination" evidence=IMP
GO:0090351 "seedling development" evidence=IMP
ZFIN|ZDB-GENE-050522-362 exosc6 "exosome component 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q28F19 exosc6 "Exosome complex component MTR3" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
RGD|1309832 Exosc6 "exosome component 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1919794 Exosc6 "exosome component 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RKV6 EXOSC6 "Exosome complex component MTR3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0032487 Ski6 "Ski6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1S435 EXOSC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TAIR|locus:2076710 RRP41 "AT3G61620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1702 exosc4 "exosome component 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O26779ECX1_METTH3, ., 1, ., 1, 3, ., -0.31670.83460.9041yesno
Q5JIR6ECX1_PYRKO3, ., 1, ., 1, 3, ., -0.32180.88070.9196yesno
Q8TYC1ECX1_METKA3, ., 1, ., 1, 3, ., -0.33770.83460.9079yesno
B6YSI2ECX1_THEON3, ., 1, ., 1, 3, ., -0.32880.850.8875yesno
Q9UXC2ECX1_SULSO3, ., 1, ., 1, 3, ., -0.31530.83840.8790yesno
B1Y978ECX1_PYRNV3, ., 1, ., 1, 3, ., -0.30630.83840.8861yesno
Q6P0I8EXOS6_DANRENo assigned EC number0.36780.91150.8745yesno
Q8BTW3EXOS6_MOUSENo assigned EC number0.32120.87690.8351yesno
Q97BZ5ECX1_THEVO3, ., 1, ., 1, 3, ., -0.31220.83460.875yesno
Q9YC03ECX1_AERPE3, ., 1, ., 1, 3, ., -0.31110.84230.8902yesno
A1RST0ECX1_PYRIL3, ., 1, ., 1, 3, ., -0.31060.83840.8861yesno
A3MUP1ECX1_PYRCJ3, ., 1, ., 1, 3, ., -0.320.81530.8617yesno
A2BKC0ECX1_HYPBU3, ., 1, ., 1, 3, ., -0.31670.83460.8509yesno
Q4JB27ECX1_SULAC3, ., 1, ., 1, 3, ., -0.32270.83070.8888yesno
A9A5C9ECX1_NITMS3, ., 1, ., 1, 3, ., -0.30660.850.9057yesno
A4WM67ECX1_PYRAR3, ., 1, ., 1, 3, ., -0.31110.81530.8617yesno
O59223ECX1_PYRHO3, ., 1, ., 1, 3, ., -0.33770.850.8875yesno
Q8ZVM9ECX1_PYRAE3, ., 1, ., 1, 3, ., -0.32440.81530.8617yesno
Q9V119ECX1_PYRAB3, ., 1, ., 1, 3, ., -0.33770.850.8875yesno
Q8U0L9ECX1_PYRFU3, ., 1, ., 1, 3, ., -0.34220.850.884yesno
C5A2B9ECX1_THEGJ3, ., 1, ., 1, 3, ., -0.32180.88070.9196yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0001134203
SubName- Full=Putative uncharacterized protein; (257 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00031704
hypothetical protein (320 aa)
• ••••• 0.793
gw1.IX.3706.1
annotation not avaliable (298 aa)
• • ••• 0.768
gw1.I.838.1
hypothetical protein (302 aa)
• • ••• 0.759
estExt_Genewise1_v1.C_LG_XII0359
SubName- Full=Putative uncharacterized protein; (242 aa)
• ••••• 0.660
estExt_fgenesh4_pm.C_LG_XIV0472
hypothetical protein (288 aa)
• ••••••0.624
grail3.0016041401
SubName- Full=Putative uncharacterized protein; (199 aa)
  ••••• 0.618
eugene3.00060466
hypothetical protein (318 aa)
• • ••  0.572
estExt_fgenesh4_pm.C_LG_XIV0164
hypothetical protein (241 aa)
  ••••••0.405

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
cd11371210 cd11371, RNase_PH_MTR3, MTR3 subunit of eukaryotic 1e-104
COG0689230 COG0689, Rph, RNase PH [Translation, ribosomal str 2e-46
PRK03983244 PRK03983, PRK03983, exosome complex exonuclease Rr 2e-45
cd11370226 cd11370, RNase_PH_RRP41, RRP41 subunit of eukaryot 2e-45
TIGR02065230 TIGR02065, ECX1, archaeal exosome-like complex exo 8e-44
cd11366214 cd11366, RNase_PH_archRRP41, RRP41 subunit of arch 3e-43
cd11358218 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucl 4e-32
pfam01138129 pfam01138, RNase_PH, 3' exoribonuclease family, do 8e-32
cd11372199 cd11372, RNase_PH_RRP46, RRP46 subunit of eukaryot 3e-26
cd11367272 cd11367, RNase_PH_RRP42, RRP42 subunit of eukaryot 1e-11
COG2123272 COG2123, COG2123, RNase PH-related exoribonuclease 4e-10
cd11365256 cd11365, RNase_PH_archRRP42, RRP42 subunit of arch 4e-07
cd11368259 cd11368, RNase_PH_RRP45, RRP45 subunit of eukaryot 6e-07
PRK04282271 PRK04282, PRK04282, exosome complex RNA-binding pr 6e-06
TIGR01966236 TIGR01966, RNasePH, ribonuclease PH 6e-06
pfam0372568 pfam03725, RNase_PH_C, 3' exoribonuclease family, 2e-05
cd11369261 cd11369, RNase_PH_RRP43, RRP43 subunit of eukaryot 1e-04
PRK00173238 PRK00173, rph, ribonuclease PH; Reviewed 3e-04
cd11362227 cd11362, RNase_PH_bact, Ribonuclease PH 0.004
>gnl|CDD|206776 cd11371, RNase_PH_MTR3, MTR3 subunit of eukaryotic exosome Back     alignment and domain information 
 Score =  299 bits (769), Expect = e-104
 Identities = 104/210 (49%), Positives = 135/210 (64%), Gaps = 3/210 (1%)

Query: 47  CRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT 106
            RP F +TG V+ A GSAY E GNTKVI SV+GPR       +S+ GRLNC V +  FAT
Sbjct: 1   IRPIFLKTGVVSQAKGSAYVELGNTKVICSVYGPRPIPGRTEFSDRGRLNCEVKFAPFAT 60

Query: 107 PVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASV 163
           P R   GQ S+ ++ SS+LH+ALE A+ LE +PK+ +DVF  VLES GS L   I+ AS+
Sbjct: 61  PGRRRHGQDSEERELSSLLHQALEPAVRLEKYPKSQIDVFVTVLESDGSVLAAAITAASL 120

Query: 164 ALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGE 223
           ALADAGI MYDLV + S + +G  LL+DP  EEE    G +M+A MPS  +VTQL  +GE
Sbjct: 121 ALADAGIEMYDLVTACSAALIGDELLLDPTREEEEASSGGVMLAYMPSLNQVTQLWQSGE 180

Query: 224 WSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
                  EA+ LC+D   ++  ++R  L E
Sbjct: 181 MDVDQLEEALDLCIDGCNRIHPVVRQALLE 210

The MTR3 subunit of eukaryotic exosome is a member of the RNase_PH family, named after the bacterial Ribonuclease PH, a 3'-5' exoribonuclease. Structurally all members of this family form hexameric rings (trimers of Rrp41-Rrp45, Rrp46-Rrp43, and Mtr3-Rrp42 dimers). The eukaryotic exosome core is composed of six individually encoded RNase PH-like subunits and three additional proteins (Rrp4, Csl4 and Rrp40) that form a stable cap and contain RNA-binding domains. The RNase PH-like subunits are no longer phosphorolytic enzymes, the exosome directly associates with Rrp44 and Rrp6, hydrolytic exoribonucleases related to bacterial RNase II/R and RNase D. The exosome plays an important role in RNA turnover. It plays a crucial role in the maturation of stable RNA species such as rRNA, snRNA and snoRNA, quality control of mRNA, and the degradation of RNA processing by-products and non-coding transcripts. Length = 210
>gnl|CDD|223761 COG0689, Rph, RNase PH [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235187 PRK03983, PRK03983, exosome complex exonuclease Rrp41; Provisional Back     alignment and domain information
>gnl|CDD|206775 cd11370, RNase_PH_RRP41, RRP41 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|131120 TIGR02065, ECX1, archaeal exosome-like complex exonuclease 1 Back     alignment and domain information
>gnl|CDD|206771 cd11366, RNase_PH_archRRP41, RRP41 subunit of archaeal exosome Back     alignment and domain information
>gnl|CDD|206766 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucleases Back     alignment and domain information
>gnl|CDD|216323 pfam01138, RNase_PH, 3' exoribonuclease family, domain 1 Back     alignment and domain information
>gnl|CDD|206777 cd11372, RNase_PH_RRP46, RRP46 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|206772 cd11367, RNase_PH_RRP42, RRP42 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|225034 COG2123, COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|206770 cd11365, RNase_PH_archRRP42, RRP42 subunit of archaeal exosome Back     alignment and domain information
>gnl|CDD|206773 cd11368, RNase_PH_RRP45, RRP45 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|235268 PRK04282, PRK04282, exosome complex RNA-binding protein Rrp42; Provisional Back     alignment and domain information
>gnl|CDD|131021 TIGR01966, RNasePH, ribonuclease PH Back     alignment and domain information
>gnl|CDD|217696 pfam03725, RNase_PH_C, 3' exoribonuclease family, domain 2 Back     alignment and domain information
>gnl|CDD|206774 cd11369, RNase_PH_RRP43, RRP43 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|178914 PRK00173, rph, ribonuclease PH; Reviewed Back     alignment and domain information
>gnl|CDD|206767 cd11362, RNase_PH_bact, Ribonuclease PH Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
PRK03983244 exosome complex exonuclease Rrp41; Provisional 100.0
TIGR02065230 ECX1 archaeal exosome-like complex exonuclease 1. 100.0
PRK00173238 rph ribonuclease PH; Reviewed 100.0
TIGR01966236 RNasePH ribonuclease PH. This bacterial enzyme, ri 100.0
KOG1068245 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
COG0689230 Rph RNase PH [Translation, ribosomal structure and 100.0
PRK04282271 exosome complex RNA-binding protein Rrp42; Provisi 100.0
COG2123272 RNase PH-related exoribonuclease [Translation, rib 100.0
KOG1614291 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
TIGR03591 684 polynuc_phos polyribonucleotide nucleotidyltransfe 100.0
KOG1069217 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
PRK11824 693 polynucleotide phosphorylase/polyadenylase; Provis 100.0
TIGR02696 719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 100.0
PLN00207 891 polyribonucleotide nucleotidyltransferase; Provisi 100.0
KOG1612288 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
KOG1613298 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
TIGR03591 684 polynuc_phos polyribonucleotide nucleotidyltransfe 100.0
PRK11824 693 polynucleotide phosphorylase/polyadenylase; Provis 99.97
PF01138132 RNase_PH: 3' exoribonuclease family, domain 1 This 99.96
PLN00207 891 polyribonucleotide nucleotidyltransferase; Provisi 99.95
KOG1067 760 consensus Predicted RNA-binding polyribonucleotide 99.9
COG1185 692 Pnp Polyribonucleotide nucleotidyltransferase (pol 99.84
TIGR02696 719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 99.81
COG1185 692 Pnp Polyribonucleotide nucleotidyltransferase (pol 99.69
KOG1067 760 consensus Predicted RNA-binding polyribonucleotide 99.68
PF0372568 RNase_PH_C: 3' exoribonuclease family, domain 2 Th 99.3
>PRK03983 exosome complex exonuclease Rrp41; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.7e-52  Score=362.48  Aligned_cols=228  Identities=34%  Similarity=0.501  Sum_probs=214.9

Q ss_pred             CCCCCCCCCCCCCCCcceEEEeCCCCCCCeeEEEEeCCeEEEEEEEcccccc-cccCCCceeEEEEEEEeecCcccCCC-
Q 024906           33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPVRG-  110 (260)
Q Consensus        33 ~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~-~~~~~~~~g~l~v~v~~~p~~~~~~g-  110 (260)
                      +.+++|+|||.++|+|++++++|.+++++|||++++|+|+|+|+|+||.+.. +..+.|++|.+.|+++++||++..+. 
T Consensus        10 ~~~~~R~DGR~~~~~R~i~i~~G~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~   89 (244)
T PRK03983         10 LEDGLRLDGRKPDELRPIKIEVGVLKNADGSAYLEWGNNKIIAAVYGPREMHPRHLQLPDRAVLRVRYNMAPFSVDERKR   89 (244)
T ss_pred             ccCCCCCCCCCcCcccceEEEeCCCCCCCeEEEEEECCeEEEEEEecCCccccccccCCCcEEEEEEEEcCCCccccccC
Confidence            7899999999999999999999999999999999999999999999998753 34567999999999999999986532 


Q ss_pred             --CCccHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEcCCCccHhHHHHHHHHHHHHcCCcccCeEEEEEEEEeCCeE
Q 024906          111 --QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNL  188 (260)
Q Consensus       111 --~~~~~~~l~~~L~~~l~~~i~le~~pk~~i~I~v~VL~~dG~l~~a~i~Aa~~AL~~agip~~~~~~avt~~~~~~~i  188 (260)
                        +++++.+++++|+++|+++++++.||++.|+|+++||++|||+++|++||+++||+|+||||++++++++++++++.+
T Consensus        90 ~~~~~~~~~~s~~l~~~l~~~i~~~~~p~~~I~I~i~VL~~DG~~~~aai~Aa~lAL~dagIp~~~~v~avtv~~~~~~~  169 (244)
T PRK03983         90 PGPDRRSIEISKVIREALEPAIMLELFPRTVIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAGCAVGKVDGVI  169 (244)
T ss_pred             CCCChhHHHHHHHHHHHHHHhccHHhCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHhcCCccccceeEEEEEEECCEE
Confidence              566889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhcCCeeEEEEEcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 024906          189 LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE  260 (260)
Q Consensus       189 v~DPt~~Ee~~~~~~~~va~~~~~~~i~~i~~~G~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~~~~  260 (260)
                      ++|||..||+.+++.++|+++++.++|+++++.|.++.+++.+++++|.++|+++.++|+++|+++..+.+|
T Consensus       170 i~DPt~~Ee~~~~~~l~va~~~~~~~I~~l~~~G~~~~~~~~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~~  241 (244)
T PRK03983        170 VLDLNKEEDNYGEADMPVAIMPRLGEITLLQLDGNLTREEFLEALELAKKGIKRIYQLQREALKSKYGEIAE  241 (244)
T ss_pred             EECCCHHHhccCCceEEEEEECCCCCEEEEEEecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999988778999999999999999999999999999999999999999999887664

>TIGR02065 ECX1 archaeal exosome-like complex exonuclease 1 Back     alignment and domain information
>PRK00173 rph ribonuclease PH; Reviewed Back     alignment and domain information
>TIGR01966 RNasePH ribonuclease PH Back     alignment and domain information
>KOG1068 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional Back     alignment and domain information
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1614 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>KOG1069 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>KOG1612 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1613 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>PF01138 RNase_PH: 3' exoribonuclease family, domain 1 This Prosite family only includes Ribonuclease PH; InterPro: IPR001247 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
2wnr_B240 The Structure Of Methanothermobacter Thermautotroph 6e-31
2pnz_A249 Crystal Structure Of The P. Abyssi Exosome Rnase Ph 7e-31
3l7z_B245 Crystal Structure Of The S. Solfataricus Archaeal E 1e-25
2br2_B248 Rnase Ph Core Of The Archaeal Exosome Length = 248 1e-25
2je6_B250 Structure Of A 9-Subunit Archaeal Exosome Length = 3e-25
3m7n_D258 Archaeoglobus Fulgidus Exosome With Rna Bound To Th 1e-22
2ba0_F258 Archaeal Exosome Core Length = 258 2e-22
2nn6_B249 Structure Of The Human Rna Exosome Composed Of Rrp4 3e-20
2nn6_F272 Structure Of The Human Rna Exosome Composed Of Rrp4 1e-19
4ifd_B248 Crystal Structure Of An 11-subunit Eukaryotic Exoso 2e-15
2wp8_B246 Yeast Rrp44 Nuclease Length = 246 5e-15
3hkm_A246 Crystal Structure Of Rice(Oryza Sativa) Rrp46 Lengt 4e-10
3krn_A222 Crystal Structure Of C. Elegans Cell-Death-Related 3e-08
1udn_A255 Crystal Structure Of The Trna Processing Enzyme Rna 8e-07
1uds_A255 Crystal Structure Of The Trna Processing Enzyme Rna 8e-07
1udo_A255 Crystal Structure Of The Trna Processing Enzyme Rna 9e-07
3b4t_A262 Crystal Structure Of Mycobacterium Tuberculosis Rna 9e-07
1udq_A255 Crystal Structure Of The Trna Processing Enzyme Rna 1e-06
1r6l_A239 Crystal Structure Of The Trna Processing Enzyme Rna 1e-05
1r6m_A239 Crystal Structure Of The Trna Processing Enzyme Rna 1e-05
4ifd_D245 Crystal Structure Of An 11-subunit Eukaryotic Exoso 3e-05
2nn6_D237 Structure Of The Human Rna Exosome Composed Of Rrp4 4e-05
2pnz_B277 Crystal Structure Of The P. Abyssi Exosome Rnase Ph 4e-04
>pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly Length = 240 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 4/221 (1%)
Query: 37  LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
           +R D R F + RP     G +  A GS+Y EFG  K++V+V+GPRE++ + +   +   +
Sbjct: 16  VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 96  NCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
            C  +   F+   R + G D +  + S +  +AL  A+ILE FP++ +DVF  VLE+ G 
Sbjct: 76  RCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGG 135
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
                I+ ASVALADAGI M D+V + +   +G  +++D   EE+      + +A +P  
Sbjct: 136 TRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRT 195
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
            E+T L   G  +   F  A+ L ++   ++ ++ +  L++
Sbjct: 196 REITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRK 236
>pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp Length = 249 Back     alignment and structure
>pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome Length = 245 Back     alignment and structure
>pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome Length = 248 Back     alignment and structure
>pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Length = 250 Back     alignment and structure
>pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site Length = 258 Back     alignment and structure
>pdb|2BA0|F Chain F, Archaeal Exosome Core Length = 258 Back     alignment and structure
>pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 249 Back     alignment and structure
>pdb|2NN6|F Chain F, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 272 Back     alignment and structure
>pdb|4IFD|B Chain B, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 248 Back     alignment and structure
>pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease Length = 246 Back     alignment and structure
>pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46 Length = 246 Back     alignment and structure
>pdb|3KRN|A Chain A, Crystal Structure Of C. Elegans Cell-Death-Related Nuclease 5(Crn-5) Length = 222 Back     alignment and structure
>pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Aquifex Aeolicus Length = 255 Back     alignment and structure
>pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph R126a Mutant From Aquifex Aeolicus Length = 255 Back     alignment and structure
>pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph R86a Mutant From Aquifex Aeolicus Length = 255 Back     alignment and structure
>pdb|3B4T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 Length = 262 Back     alignment and structure
>pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph T125a Mutant From Aquifex Aeolicus Length = 255 Back     alignment and structure
>pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Pseudomonas Aeruginosa Length = 239 Back     alignment and structure
>pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Pseudomonas Aeruginosa In Complex With Phosphate Length = 239 Back     alignment and structure
>pdb|4IFD|D Chain D, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 245 Back     alignment and structure
>pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 237 Back     alignment and structure
>pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp Length = 277 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
2wp8_B246 Exosome complex component SKI6; nucleus, hydrolase 2e-70
2nn6_F272 MTR3, exosome component 6; RNA, exosome, PM/SCL, p 6e-70
3krn_A222 Protein C14A4.5, confirmed by transcript evidence; 2e-65
2nn6_D237 Exosome complex exonuclease RRP46; RNA, exosome, P 7e-65
2wnr_B240 Probable exosome complex exonuclease 1; phosphate 7e-49
2po1_A249 Probable exosome complex exonuclease 1; RNAse PH, 4e-46
2nn6_B249 Exosome complex exonuclease RRP41; RNA, exosome, P 5e-46
3hkm_A246 OS03G0854200 protein; RNAse PH domain, phosphoryla 2e-41
1r6l_A239 Ribonuclease PH; beta-alpha-beta-alpha fold, hexam 4e-40
3b4t_A262 Ribonuclease PH; RNAse, tRNA nucleotidyltransferas 5e-40
2je6_B250 RRP41, exosome complex exonuclease 1; nuclease, hy 2e-37
1udn_A255 Ribonuclease PH, RNAse PH; transferase, riken stru 9e-37
3m7n_D258 Probable exosome complex exonuclease 1; exosome, R 1e-34
3dd6_A255 Ribonuclease PH; exoribonuclease, tRNA maturation, 7e-34
2po1_B277 Probable exosome complex exonuclease 2; RNAse PH, 1e-30
2wnr_A271 Probable exosome complex exonuclease 2; phosphate 3e-29
2nn6_C278 Exosome complex exonuclease RRP43; RNA, exosome, P 3e-28
3m7n_G259 Probable exosome complex exonuclease 2; exosome, R 1e-27
2nn6_E305 Exosome complex exonuclease RRP42; RNA, exosome, P 7e-27
2je6_A277 RRP42, exosome complex exonuclease 2; nuclease, hy 2e-25
2nn6_A358 Polymyositis/scleroderma autoantigen 1; RNA, exoso 1e-24
1oys_A245 Ribonuclease PH; transferase, tRNA processing; 2.4 2e-24
2wp8_A305 Exosome complex component RRP45; nucleus, hydrolas 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
 Score =  216 bits (551), Expect = 2e-70
 Identities = 54/230 (23%), Positives = 108/230 (46%), Gaps = 8/230 (3%)

Query: 35  DWLRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
           + LR D R +++ R          ++A GS+Y E GN K+I  V GP+E + K+ M ++ 
Sbjct: 10  EGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSK 69

Query: 93  GRLNCNVSYTTFAT----PVRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
             LN +V+   F+         +      +  + L +  E  ++L  +P+T +D+   VL
Sbjct: 70  ALLNVSVNINKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVL 129

Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
           E  G  +  +I+  ++AL DAGI M+D ++ +SV       L+D    EE+    ++ + 
Sbjct: 130 EQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAM-STVTLG 188

Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
            +    +++ L V  +         + + +  + ++  +M   L++ A  
Sbjct: 189 VVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQK 238
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 272 Back     alignment and structure
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans} Length = 222 Back     alignment and structure
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 237 Back     alignment and structure
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 240 Back     alignment and structure
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A* Length = 249 Back     alignment and structure
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 249 Back     alignment and structure
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group} Length = 246 Back     alignment and structure
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A Length = 239 Back     alignment and structure
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 262 Back     alignment and structure
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B Length = 250 Back     alignment and structure
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Length = 255 Back     alignment and structure
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E Length = 258 Back     alignment and structure
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis} Length = 255 Back     alignment and structure
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Length = 277 Back     alignment and structure
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 271 Back     alignment and structure
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 278 Back     alignment and structure
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Length = 259 Back     alignment and structure
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 305 Back     alignment and structure
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Length = 277 Back     alignment and structure
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 358 Back     alignment and structure
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A Length = 245 Back     alignment and structure
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 305 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
2po1_A249 Probable exosome complex exonuclease 1; RNAse PH, 100.0
2wnr_B240 Probable exosome complex exonuclease 1; phosphate 100.0
2nn6_B249 Exosome complex exonuclease RRP41; RNA, exosome, P 100.0
2je6_B250 RRP41, exosome complex exonuclease 1; nuclease, hy 100.0
2nn6_F272 MTR3, exosome component 6; RNA, exosome, PM/SCL, p 100.0
3m7n_D258 Probable exosome complex exonuclease 1; exosome, R 100.0
2wp8_B246 Exosome complex component SKI6; nucleus, hydrolase 100.0
3b4t_A262 Ribonuclease PH; RNAse, tRNA nucleotidyltransferas 100.0
3dd6_A255 Ribonuclease PH; exoribonuclease, tRNA maturation, 100.0
1oys_A245 Ribonuclease PH; transferase, tRNA processing; 2.4 100.0
2nn6_D237 Exosome complex exonuclease RRP46; RNA, exosome, P 100.0
1r6l_A239 Ribonuclease PH; beta-alpha-beta-alpha fold, hexam 100.0
1udn_A255 Ribonuclease PH, RNAse PH; transferase, riken stru 100.0
2po1_B277 Probable exosome complex exonuclease 2; RNAse PH, 100.0
2je6_A277 RRP42, exosome complex exonuclease 2; nuclease, hy 100.0
3hkm_A246 OS03G0854200 protein; RNAse PH domain, phosphoryla 100.0
3m7n_G259 Probable exosome complex exonuclease 2; exosome, R 100.0
2wnr_A271 Probable exosome complex exonuclease 2; phosphate 100.0
2nn6_C278 Exosome complex exonuclease RRP43; RNA, exosome, P 100.0
2nn6_A358 Polymyositis/scleroderma autoantigen 1; RNA, exoso 100.0
2wp8_A305 Exosome complex component RRP45; nucleus, hydrolas 100.0
2nn6_E305 Exosome complex exonuclease RRP42; RNA, exosome, P 100.0
3gme_A549 Polyribonucleotide nucleotidyltransferase; protein 100.0
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 100.0
4aid_A 726 Polyribonucleotide nucleotidyltransferase; transfe 100.0
1e3p_A 757 Guanosine pentaphosphate synthetase; polyribonucle 100.0
3krn_A222 Protein C14A4.5, confirmed by transcript evidence; 100.0
3cdi_A 723 Polynucleotide phosphorylase; mRNA turnover, RNAse 100.0
3u1k_A 630 Polyribonucleotide nucleotidyltransferase 1, MITO; 100.0
3gme_A 549 Polyribonucleotide nucleotidyltransferase; protein 99.97
4aid_A 726 Polyribonucleotide nucleotidyltransferase; transfe 99.96
3cdi_A 723 Polynucleotide phosphorylase; mRNA turnover, RNAse 99.96
1e3p_A 757 Guanosine pentaphosphate synthetase; polyribonucle 99.96
1whu_A104 Polynucleotide phosphorylase; 3'-5' RNA exonucleas 87.97
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-53  Score=371.62  Aligned_cols=235  Identities=32%  Similarity=0.474  Sum_probs=217.5

Q ss_pred             CCCcccCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCeeEEEEeCCeEEEEEEEccccccc-ccCCCceeEEEEEEEeec
Q 024906           25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-AMMYSNIGRLNCNVSYTT  103 (260)
Q Consensus        25 ~~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~-~~~~~~~g~l~v~v~~~p  103 (260)
                      +|+.++...++++|+|||.++|+|++++++|++++++|||+|++|+|+|+|+|+||.+..+ +.+.+++|+|+|+|+++|
T Consensus         4 ~p~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p   83 (249)
T 2po1_A            4 KPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAP   83 (249)
T ss_dssp             -----CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECG
T ss_pred             CCcceEEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCC
Confidence            4666666778999999999999999999999999999999999999999999999776543 677899999999999999


Q ss_pred             CcccCC---CCCccHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEcCCCccHhHHHHHHHHHHHHcCCcccCeEEEEE
Q 024906          104 FATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS  180 (260)
Q Consensus       104 ~~~~~~---g~~~~~~~l~~~L~~~l~~~i~le~~pk~~i~I~v~VL~~dG~l~~a~i~Aa~~AL~~agip~~~~~~avt  180 (260)
                      |+++.+   +++.++++++++|+++|+++|+++.||++.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|
T Consensus        84 ~a~~~~~~~~~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs  163 (249)
T 2po1_A           84 FSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACA  163 (249)
T ss_dssp             GGSSSCCCSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEE
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceEEEE
Confidence            999854   37789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCeEEeCCChhhhhcCCeeEEEEEcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024906          181 VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQ  259 (260)
Q Consensus       181 ~~~~~~~iv~DPt~~Ee~~~~~~~~va~~~~~~~i~~i~~~G~~~~~~l~~~l~~A~~~~~~i~~~i~~~l~~~~~~~~  259 (260)
                      +|++++.+++|||..||..+++.++|+++++.++|+++++.|.++.+++.+++++|.++++++.++++++|+++.+++.
T Consensus       164 ~g~~~~~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~  242 (249)
T 2po1_A          164 AGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIA  242 (249)
T ss_dssp             EEEETTEEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCEEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999997788899999999999999999999999999999999999999999887764
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B Back     alignment and structure
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E Back     alignment and structure
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis} Back     alignment and structure
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A Back     alignment and structure
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A Back     alignment and structure
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Back     alignment and structure
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Back     alignment and structure
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Back     alignment and structure
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group} Back     alignment and structure
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Back     alignment and structure
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans} Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 260
d2je6b1148 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, 9e-23
d2ba0d1144 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, 2e-21
d2nn6f1147 d.14.1.4 (F:29-175) Exosome complex exonuclease MT 4e-20
d2nn6b1145 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP 8e-20
d1r6la1151 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseu 6e-19
d2nn6d1122 d.14.1.4 (D:25-146) Exosome complex exonuclease RR 7e-19
d2ba0g1176 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,E 4e-18
d2nn6c1181 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP 6e-18
d2nn6f295 d.101.1.1 (F:176-270) Exosome complex exonuclease 7e-18
d1udsa1149 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aqui 9e-18
d2nn6e1187 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP 1e-17
d1oysa1151 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Baci 4e-17
d1e3ha3137 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/ 1e-16
d2je6a1191 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,E 5e-15
d2nn6a1184 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP 9e-15
d2je6b286 d.101.1.1 (B:156-241) Exosome complex exonuclease 2e-12
d2nn6b290 d.101.1.1 (B:151-240) Exosome complex exonuclease 2e-12
d2nn6d289 d.101.1.1 (D:147-235) Exosome complex exonuclease 1e-10
d2nn6e294 d.101.1.1 (E:192-285) Exosome complex exonuclease 8e-10
d2nn6c289 d.101.1.1 (C:188-276) Exosome complex exonuclease 1e-08
d2ba0g279 d.101.1.1 (G:179-257) Exosome complex exonuclease 8e-08
d2ba0d299 d.101.1.1 (D:154-252) Exosome complex exonuclease 8e-08
d2je6a284 d.101.1.1 (A:192-275) Exosome complex exonuclease 1e-07
d1e3ha2149 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/gu 3e-07
d2nn6a2118 d.101.1.1 (A:185-302) Exosome complex exonuclease 9e-07
d1r6la288 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {P 2e-05
d1oysa286 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {B 2e-05
d1udsa2105 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {A 0.002
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 148 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Ribonuclease PH domain 1-like
domain: Exosome complex exonuclease 1, ECX1
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 89.1 bits (220), Expect = 9e-23
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 4/140 (2%)

Query: 35  DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR-ESKKAMMYSNIG 93
           D  R D R   + R      G + +A GSA  E GNTK I +V+GP+    + +   +  
Sbjct: 9   DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 68

Query: 94  RLNCNVSYTTFATPVRGQGSDHKD---FSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
            L      T F+T  R   +  +     S ++ +ALE A+++E FP+T +DVF  +L++ 
Sbjct: 69  VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 128

Query: 151 GSDLPVVISCASVALADAGI 170
                V +  AS+ALADAGI
Sbjct: 129 AGSRLVSLMAASLALADAGI 148
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 144 Back     information, alignment and structure
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 147 Back     information, alignment and structure
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 151 Back     information, alignment and structure
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 176 Back     information, alignment and structure
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Length = 149 Back     information, alignment and structure
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 187 Back     information, alignment and structure
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Length = 151 Back     information, alignment and structure
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 137 Back     information, alignment and structure
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 191 Back     information, alignment and structure
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 86 Back     information, alignment and structure
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Back     information, alignment and structure
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Back     information, alignment and structure
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 79 Back     information, alignment and structure
>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 99 Back     information, alignment and structure
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 Back     information, alignment and structure
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 149 Back     information, alignment and structure
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} Length = 88 Back     information, alignment and structure
>d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} Length = 86 Back     information, alignment and structure
>d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 105 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d2je6b1148 Exosome complex exonuclease 1, ECX1 {Sulfolobus so 100.0
d2ba0d1144 Exosome complex exonuclease 1, ECX1 {Archaeoglobus 100.0
d2nn6b1145 Exosome complex exonuclease RRP41 {Human (Homo sap 100.0
d1udsa1149 Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId 100.0
d1r6la1151 Ribonuclease PH, domain 1 {Pseudomonas aeruginosa 100.0
d1oysa1151 Ribonuclease PH, domain 1 {Bacillus subtilis [TaxI 100.0
d2ba0g1176 Exosome complex exonuclease 2,ECX2 {Archaeoglobus 99.97
d2je6a1191 Exosome complex exonuclease 2,ECX2 {Sulfolobus sol 99.97
d2nn6e1187 Exosome complex exonuclease RRP42 {Human (Homo sap 99.97
d1e3ha3137 Polynucleotide phosphorylase/guanosine pentaphosph 99.96
d2nn6d1122 Exosome complex exonuclease RRP46 {Human (Homo sap 99.96
d2nn6c1181 Exosome complex exonuclease RRP43 {Human (Homo sap 99.96
d2nn6f1147 Exosome complex exonuclease MTR3 {Human (Homo sapi 99.96
d2nn6a1184 Exosome complex exonuclease RRP45 {Human (Homo sap 99.96
d1e3ha2149 Polynucleotide phosphorylase/guanosine pentaphosph 99.89
d2nn6d289 Exosome complex exonuclease RRP46 {Human (Homo sap 99.75
d2nn6b290 Exosome complex exonuclease RRP41 {Human (Homo sap 99.74
d2nn6a2118 Exosome complex exonuclease RRP45 {Human (Homo sap 99.71
d2nn6e294 Exosome complex exonuclease RRP42 {Human (Homo sap 99.71
d2je6b286 Exosome complex exonuclease 1, ECX1 {Sulfolobus so 99.7
d2je6a284 Exosome complex exonuclease 2, ECX2 {Sulfolobus so 99.69
d2ba0g279 Exosome complex exonuclease 2, ECX2 {Archaeoglobus 99.68
d2nn6c289 Exosome complex exonuclease RRP43 {Human (Homo sap 99.66
d2nn6f295 Exosome complex exonuclease MTR3 {Human (Homo sapi 99.6
d1r6la288 Ribonuclease PH, domain 2 {Pseudomonas aeruginosa 99.55
d2ba0d299 Exosome complex exonuclease 1, ECX1 {Archaeoglobus 99.51
d1oysa286 Ribonuclease PH, domain 2 {Bacillus subtilis [TaxI 99.35
d1udsa2105 Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId 99.28
d1e3ha5111 Polynucleotide phosphorylase/guanosine pentaphosph 98.2
d1e3ha696 Polynucleotide phosphorylase/guanosine pentaphosph 97.06
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Ribonuclease PH domain 1-like
domain: Exosome complex exonuclease 1, ECX1
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=2.9e-36  Score=240.92  Aligned_cols=138  Identities=35%  Similarity=0.512  Sum_probs=127.8

Q ss_pred             CCCCCCCCCCCCCCCcceEEEeCCCCCCCeeEEEEeCCeEEEEEEEccccc-ccccCCCceeEEEEEEEeecCcccCCC-
Q 024906           33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPVRG-  110 (260)
Q Consensus        33 ~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~-~~~~~~~~~g~l~v~v~~~p~~~~~~g-  110 (260)
                      .++|+|+|||.++|+|++++++|++++++|||+|++|+|+|+|+|+||.+. .+....++++.++|+++++||++..+. 
T Consensus         7 ~~~g~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   86 (148)
T d2je6b1           7 LDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKN   86 (148)
T ss_dssp             CTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCC
T ss_pred             cCCCccCCCCCCCCccCeEEEECCCCCCCEEEEEEcCCccEEeecccCccccchhhcCCcceEEEEEEEecccccccccc
Confidence            468999999999999999999999999999999999999999999998764 345577999999999999999987543 


Q ss_pred             --CCccHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEcCCCccHhHHHHHHHHHHHHcCC
Q 024906          111 --QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGI  170 (260)
Q Consensus       111 --~~~~~~~l~~~L~~~l~~~i~le~~pk~~i~I~v~VL~~dG~l~~a~i~Aa~~AL~~agi  170 (260)
                        +..++.+++.+|+++|+++++++.||++.|+|+|+||++|||+++|++||+++||+|+||
T Consensus        87 ~~~~~~~~el~~~l~~~l~~~i~~~~~p~~~i~v~v~VL~~DG~~~~a~i~aa~~AL~daGI  148 (148)
T d2je6b1          87 PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGI  148 (148)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTC
T ss_pred             ccccchhHHHHHHHHHHhhccccHHHcCCEEEEEEEEEEEcCCCHHHHHHHHHHHHHHHcCC
Confidence              556789999999999999999999999999999999999999999999999999999997
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure