Citrus Sinensis ID: 024921

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MENQYLNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYPGSRV
cccccHHHHHHHHccccccccccccccEEEEEccccccHHHHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHccccccccccEEEEEEccHHHHHHHcccHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHccEEEEEcccccccccccEEEEEEEEcccccccccccccEEEEEEEEEcccEEEEcccccc
ccccHHHHHHHHHcccccccccccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHcccHHHHHHcccEEEEcHHHHHccHccccccccccHHHHHHHHHHHHccccccccccEEEEEEcHHHHHHHccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHccEEEEEccccccccccccEEEEEEEccccccccccccccEEEEEEEEcccEEEEcccccc
MENQYLNLLDRalgldgpsepwplsgrvVLIEDCVETSGSFVLHQLvkrslsptssnVIIFVAFANPFSHYDRILRKLGCnlvtqrdnkRFIFFDMLmlrcpdvdegksseggLVLLYEKILKTIcglpgdkkdyVTIMIDDISLVEVAANGGSDYVLDFLHYCHALtsefdcslitlnhediyssmerptLILQMEYLADILIkaeplstglatdvhGQLTVlnkgtshrlgrsgnkihnfhykvkentveyfypgsrv
MENQYLNLLDRalgldgpsepWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNkgtshrlgrsgnkihnfhykvkentveyfypgsrv
MENQYLNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYPGSRV
*****LNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFY*****
******N**DRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILK**********DYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLN**************HNFHYKVKENTVEYFYPGS**
MENQYLNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYPGSRV
****YLNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYPG***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENQYLNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVKENTVEYFYPGSRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q8L9Y2262 Elongator complex protein yes no 0.988 0.980 0.596 6e-88
Q8BK75266 Elongator complex protein yes no 0.865 0.845 0.277 1e-17
B2RYG8266 Elongator complex protein yes no 0.865 0.845 0.248 1e-15
Q28CX0266 Elongator complex protein yes no 0.876 0.857 0.252 3e-15
Q0IHA2265 Elongator complex protein N/A no 0.869 0.852 0.283 4e-15
Q0PNE2266 Elongator complex protein yes no 0.865 0.845 0.254 2e-14
Q0P424264 Elongator complex protein yes no 0.857 0.844 0.254 7e-08
Q9GPT6338 Elongator complex protein yes no 0.45 0.346 0.294 3e-07
>sp|Q8L9Y2|ELP6_ARATH Elongator complex protein 6 OS=Arabidopsis thaliana GN=ELP6 PE=1 SV=1 Back     alignment and function desciption
 Score =  323 bits (829), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/260 (59%), Positives = 200/260 (76%), Gaps = 3/260 (1%)

Query: 3   NQYLNLLDRALGLDGP-SEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIF 61
           ++ LNLLD ALG D   + P PL+G+V+LIEDCVETSGSFVLHQL+KR LS  SS+ +IF
Sbjct: 2   DRSLNLLDLALGFDEQLAIPSPLNGKVILIEDCVETSGSFVLHQLMKRVLSSNSSDALIF 61

Query: 62  VAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKI 121
           +AFA PFSHYDRILRKLGCNL T + N R +FFDMLM++C D D+ + +   +  L+ +I
Sbjct: 62  LAFARPFSHYDRILRKLGCNLATHKSNNRLVFFDMLMVKCSDGDQMEDNVSAVAKLFREI 121

Query: 122 LKTICGLPGDKKDYVTIMIDDISLVEVAANGG-SDYVLDFLHYCHALTSEFDCSLITLNH 180
            +T+  L       +T+M+DD+SL+E+A  G  SD+VLDFLHYCH L+SE +CSL+ LNH
Sbjct: 122 QETVRKLQSVTSGNITVMVDDMSLLEIATTGSNSDHVLDFLHYCHTLSSESNCSLVILNH 181

Query: 181 EDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHR-LGRSGNKI 239
           EDIY+SMERP  +LQM  LAD++IKAEPL++GLA DVHGQLTVLNKG S+   G S NK+
Sbjct: 182 EDIYASMERPAFLLQMVCLADVVIKAEPLASGLANDVHGQLTVLNKGISNSGRGSSRNKL 241

Query: 240 HNFHYKVKENTVEYFYPGSR 259
            NF +++KEN ++YFYPG R
Sbjct: 242 QNFQFRIKENGIDYFYPGCR 261
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4 (By similarity). Promotes organs development by modulating cell division rate. Involved in oxidative stress signaling. Prevents anthocyanins accumulation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8BK75|ELP6_MOUSE Elongator complex protein 6 OS=Mus musculus GN=Elp6 PE=2 SV=1 Back     alignment and function description
>sp|B2RYG8|ELP6_RAT Elongator complex protein 6 OS=Rattus norvegicus GN=Elp6 PE=2 SV=1 Back     alignment and function description
>sp|Q28CX0|ELP6_XENTR Elongator complex protein 6 OS=Xenopus tropicalis GN=elp6 PE=2 SV=2 Back     alignment and function description
>sp|Q0IHA2|ELP6_XENLA Elongator complex protein 6 OS=Xenopus laevis GN=elp6 PE=2 SV=1 Back     alignment and function description
>sp|Q0PNE2|ELP6_HUMAN Elongator complex protein 6 OS=Homo sapiens GN=ELP6 PE=1 SV=1 Back     alignment and function description
>sp|Q0P424|ELP6_DANRE Elongator complex protein 6 OS=Danio rerio GN=elp6 PE=2 SV=2 Back     alignment and function description
>sp|Q9GPT6|ELP6_DICDI Elongator complex protein 6 OS=Dictyostelium discoideum GN=elp6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
224100883261 predicted protein [Populus trichocarpa] 1.0 0.996 0.697 1e-104
225448747256 PREDICTED: UPF0405 protein C3orf75 homol 0.946 0.960 0.670 3e-92
255568153284 conserved hypothetical protein [Ricinus 0.934 0.855 0.633 8e-90
297809211262 predicted protein [Arabidopsis lyrata su 0.988 0.980 0.6 2e-87
358248932260 uncharacterized protein LOC100797712 [Gl 0.988 0.988 0.589 3e-87
18413296262 elongator protein 6 [Arabidopsis thalian 0.988 0.980 0.596 3e-86
449507569260 PREDICTED: elongator complex protein 6-l 0.973 0.973 0.6 4e-83
449451882260 PREDICTED: elongator complex protein 6-l 0.984 0.984 0.587 3e-79
357504713254 hypothetical protein MTR_7g050300 [Medic 0.976 1.0 0.569 6e-79
147772103321 hypothetical protein VITISV_007890 [Viti 0.796 0.644 0.666 2e-75
>gi|224100883|ref|XP_002312051.1| predicted protein [Populus trichocarpa] gi|222851871|gb|EEE89418.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/261 (69%), Positives = 215/261 (82%), Gaps = 1/261 (0%)

Query: 1   MENQYLNLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTS-SNVI 59
           MEN+ LNLLD ALGLD  ++PWPL G+VVLIEDCVETSG FVLHQL+KR+LS  S +N +
Sbjct: 1   MENRSLNLLDEALGLDYQTDPWPLRGKVVLIEDCVETSGCFVLHQLLKRTLSSQSPNNTV 60

Query: 60  IFVAFANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYE 119
           IF+AF++P SHYDRILRKLGCNLV QR+N RF FFDML L CPD  EGK+ +GG   LY 
Sbjct: 61  IFLAFSHPLSHYDRILRKLGCNLVAQRENGRFFFFDMLKLLCPDEKEGKTGKGGFTALYW 120

Query: 120 KILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHALTSEFDCSLITLN 179
           KI  TIC LP + K++ TIMIDD+SL+EVAA+G SD+VL+F+HYCH LTSE  CSLITLN
Sbjct: 121 KIQNTICALPENNKNHATIMIDDMSLMEVAAHGSSDHVLNFMHYCHTLTSELGCSLITLN 180

Query: 180 HEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKI 239
           HEDIY+SMERPT +LQ +YL D+LIKAEPL+TGLA DVHGQLTVLN+   +  G S NKI
Sbjct: 181 HEDIYTSMERPTFMLQTKYLVDVLIKAEPLATGLAADVHGQLTVLNRDFCNVKGSSKNKI 240

Query: 240 HNFHYKVKENTVEYFYPGSRV 260
            NFH+KVKEN+VEYFYPG+R 
Sbjct: 241 SNFHFKVKENSVEYFYPGTRT 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448747|ref|XP_002281393.1| PREDICTED: UPF0405 protein C3orf75 homolog [Vitis vinifera] gi|297736457|emb|CBI25328.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568153|ref|XP_002525052.1| conserved hypothetical protein [Ricinus communis] gi|223535633|gb|EEF37299.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297809211|ref|XP_002872489.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318326|gb|EFH48748.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|358248932|ref|NP_001239709.1| uncharacterized protein LOC100797712 [Glycine max] gi|255641835|gb|ACU21186.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18413296|ref|NP_567351.1| elongator protein 6 [Arabidopsis thaliana] gi|75154680|sp|Q8L9Y2.1|ELP6_ARATH RecName: Full=Elongator complex protein 6; Short=AtELP6; AltName: Full=Elongator component 6; AltName: Full=UPF0405 protein ELP6 gi|21593728|gb|AAM65695.1| unknown [Arabidopsis thaliana] gi|87116610|gb|ABD19669.1| At4g10090 [Arabidopsis thaliana] gi|110735719|dbj|BAE99839.1| hypothetical protein [Arabidopsis thaliana] gi|332657437|gb|AEE82837.1| elongator protein 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449507569|ref|XP_004163069.1| PREDICTED: elongator complex protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449451882|ref|XP_004143689.1| PREDICTED: elongator complex protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357504713|ref|XP_003622645.1| hypothetical protein MTR_7g050300 [Medicago truncatula] gi|355497660|gb|AES78863.1| hypothetical protein MTR_7g050300 [Medicago truncatula] Back     alignment and taxonomy information
>gi|147772103|emb|CAN64554.1| hypothetical protein VITISV_007890 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:2124651262 ELP6 "AT4G10090" [Arabidopsis 0.976 0.969 0.603 6.6e-81
MGI|MGI:1919349266 Elp6 "elongator acetyltransfer 0.865 0.845 0.277 5.7e-20
UNIPROTKB|Q0IHA2265 elp6 "Elongator complex protei 0.869 0.852 0.287 1.2e-19
UNIPROTKB|F1SNU2266 ELP6 "Uncharacterized protein" 0.873 0.853 0.267 1.9e-19
UNIPROTKB|Q0PNE2266 ELP6 "Elongator complex protei 0.873 0.853 0.263 2.5e-19
RGD|1305478266 Elp6 "elongator acetyltransfer 0.873 0.853 0.246 1.6e-17
UNIPROTKB|E1BNP5266 C22H3orf75 "Uncharacterized pr 0.865 0.845 0.261 4.1e-17
UNIPROTKB|Q28CX0266 elp6 "Elongator complex protei 0.876 0.857 0.252 8.6e-17
UNIPROTKB|E1BRP9265 C2H3orf75 "Uncharacterized pro 0.876 0.860 0.239 7.7e-16
DICTYBASE|DDB_G0268624338 DDB_G0268624 "UPF0405 family p 0.446 0.343 0.296 1.3e-13
TAIR|locus:2124651 ELP6 "AT4G10090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 155/257 (60%), Positives = 198/257 (77%)

Query:     6 LNLLDRALGLDGP-SEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAF 64
             LNLLD ALG D   + P PL+G+V+LIEDCVETSGSFVLHQL+KR LS  SS+ +IF+AF
Sbjct:     5 LNLLDLALGFDEQLAIPSPLNGKVILIEDCVETSGSFVLHQLMKRVLSSNSSDALIFLAF 64

Query:    65 ANPFSHYDRILRKLGCNLVTQRDNKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKT 124
             A PFSHYDRILRKLGCNL T + N R +FFDMLM++C D D+ + +   +  L+ +I +T
Sbjct:    65 ARPFSHYDRILRKLGCNLATHKSNNRLVFFDMLMVKCSDGDQMEDNVSAVAKLFREIQET 124

Query:   125 ICGLPGDKKDYVTIMIDDISLVEVAANGG-SDYVLDFLHYCHALTSEFDCSLITLNHEDI 183
             +  L       +T+M+DD+SL+E+A  G  SD+VLDFLHYCH L+SE +CSL+ LNHEDI
Sbjct:   125 VRKLQSVTSGNITVMVDDMSLLEIATTGSNSDHVLDFLHYCHTLSSESNCSLVILNHEDI 184

Query:   184 YSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHR-LGRSGNKIHNF 242
             Y+SMERP  +LQM  LAD++IKAEPL++GLA DVHGQLTVLNKG S+   G S NK+ NF
Sbjct:   185 YASMERPAFLLQMVCLADVVIKAEPLASGLANDVHGQLTVLNKGISNSGRGSSRNKLQNF 244

Query:   243 HYKVKENTVEYFYPGSR 259
              +++KEN ++YFYPG R
Sbjct:   245 QFRIKENGIDYFYPGCR 261
GO:0006979 "response to oxidative stress" evidence=IMP
GO:0008284 "positive regulation of cell proliferation" evidence=IMP
GO:0031538 "negative regulation of anthocyanin metabolic process" evidence=IMP
GO:2000024 "regulation of leaf development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0033588 "Elongator holoenzyme complex" evidence=IDA
MGI|MGI:1919349 Elp6 "elongator acetyltransferase complex subunit 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IHA2 elp6 "Elongator complex protein 6" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNU2 ELP6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q0PNE2 ELP6 "Elongator complex protein 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305478 Elp6 "elongator acetyltransferase complex subunit 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNP5 C22H3orf75 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q28CX0 elp6 "Elongator complex protein 6" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|E1BRP9 C2H3orf75 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268624 DDB_G0268624 "UPF0405 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L9Y2ELP6_ARATHNo assigned EC number0.59610.98840.9809yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VIII0152
hypothetical protein (262 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
pfam09807251 pfam09807, DUF2348, Uncharacterized conserved prot 6e-68
>gnl|CDD|220414 pfam09807, DUF2348, Uncharacterized conserved protein (DUF2348) Back     alignment and domain information 
 Score =  210 bits (535), Expect = 6e-68
 Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 27/257 (10%)

Query: 7   NLLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFAN 66
           +LL+     D         G+  L+ D  +T GSF++H  +   L   +   + FVA   
Sbjct: 7   SLLNATPDTDEQ-------GKFTLLCDA-KTDGSFLVHHFLSFYLR--AGCKVCFVALVQ 56

Query: 67  PFSHYDRILRKLGCNLVTQRDNKRFIFFDMLM------LRCPDVDEGKS-----SEGGLV 115
            FSHY  + +KLG +L T R+  + +F + L        +C D  +        + G L 
Sbjct: 57  SFSHYSIVGQKLGVSLTTARERGQLVFLEGLKSSVDVLFKCSDGTQPLQFLREANAGNLK 116

Query: 116 LLYEKILKTIC--GLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHA-LTSEFD 172
            L+  + +T+      G+   Y  +++DD+S++      G+  VLDF+HYC A + SE  
Sbjct: 117 PLFRFVQETLKPSDSSGNSWKYPVLIVDDLSVLLSLGV-GAVAVLDFMHYCRATVCSELQ 175

Query: 173 CSLITLNHEDIYSSMERP-TLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHR 231
            +++ L H+D  +S E    L+  + + + ++++AE L+TG   DVHGQLT+L +G S  
Sbjct: 176 GNMVILVHDDEEASDEENELLLRGLSHQSHLILRAEGLATGFCRDVHGQLTILWRGPS-N 234

Query: 232 LGRSGNKIHNFHYKVKE 248
            GR  ++   + YK+++
Sbjct: 235 SGRGRSQSKIYQYKIQD 251

Members of this family of putative uncharacterized proteins have no known function. Length = 251

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
PF09807249 DUF2348: Uncharacterized conserved protein (DUF234 100.0
KOG4723248 consensus Uncharacterized conserved protein [Funct 100.0
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 99.52
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 99.39
PRK06067234 flagellar accessory protein FlaH; Validated 99.38
PRK04328249 hypothetical protein; Provisional 99.36
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 99.23
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 99.18
PRK09302 509 circadian clock protein KaiC; Reviewed 99.12
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 99.09
PRK09302509 circadian clock protein KaiC; Reviewed 99.08
PF10483280 Elong_Iki1: Elongator subunit Iki1; InterPro: IPR0 99.07
COG2874235 FlaH Predicted ATPases involved in biogenesis of a 98.98
TIGR02655 484 circ_KaiC circadian clock protein KaiC. Members of 98.95
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 98.85
PRK08533230 flagellar accessory protein FlaH; Reviewed 98.71
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 98.6
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 98.56
TIGR02237209 recomb_radB DNA repair and recombination protein R 98.5
PRK04301317 radA DNA repair and recombination protein RadA; Va 98.49
cd01124187 KaiC KaiC is a circadian clock protein primarily f 98.48
PRK09361225 radB DNA repair and recombination protein RadB; Pr 98.46
TIGR00416 454 sms DNA repair protein RadA. The gene protuct code 98.39
PRK11823 446 DNA repair protein RadA; Provisional 98.36
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 98.35
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 98.35
cd01393226 recA_like RecA is a bacterial enzyme which has rol 98.29
cd01394218 radB RadB. The archaeal protein radB shares simila 98.28
TIGR02236310 recomb_radA DNA repair and recombination protein R 98.27
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 98.19
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 98.11
PRK09354349 recA recombinase A; Provisional 98.06
PLN03186342 DNA repair protein RAD51 homolog; Provisional 98.03
PTZ00035337 Rad51 protein; Provisional 97.98
cd00983325 recA RecA is a bacterial enzyme which has roles in 97.98
PRK09519 790 recA DNA recombination protein RecA; Reviewed 97.97
TIGR02239316 recomb_RAD51 DNA repair protein RAD51. This eukary 97.94
PF05625363 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RN 97.93
TIGR02012321 tigrfam_recA protein RecA. This model describes or 97.85
PRK05973237 replicative DNA helicase; Provisional 97.8
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 97.8
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 97.75
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 97.67
PF00154322 RecA: recA bacterial DNA recombination protein; In 97.29
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 97.11
COG1066 456 Sms Predicted ATP-dependent serine protease [Postt 97.06
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 96.76
TIGR00665434 DnaB replicative DNA helicase. This model describe 96.48
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 95.99
PHA02542473 41 41 helicase; Provisional 95.81
PF05763136 DUF835: Protein of unknown function (DUF835); Inte 95.37
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 95.13
KOG4723248 consensus Uncharacterized conserved protein [Funct 94.91
KOG3949360 consensus RNA polymerase II elongator complex, sub 94.9
COG3598402 RepA RecA-family ATPase [DNA replication, recombin 94.9
PRK09165497 replicative DNA helicase; Provisional 94.77
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 94.71
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 94.65
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 94.56
PRK08506472 replicative DNA helicase; Provisional 94.34
PRK05748448 replicative DNA helicase; Provisional 93.52
PRK05595444 replicative DNA helicase; Provisional 93.35
PRK08760476 replicative DNA helicase; Provisional 92.84
PRK06321472 replicative DNA helicase; Provisional 91.85
PRK04296190 thymidine kinase; Provisional 90.87
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 90.59
PRK06904472 replicative DNA helicase; Validated 89.77
PF03192210 DUF257: Pyrococcus protein of unknown function, DU 89.39
PRK05636505 replicative DNA helicase; Provisional 89.25
PRK07773 886 replicative DNA helicase; Validated 89.02
PF14417191 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory 88.69
PF07088 484 GvpD: GvpD gas vesicle protein; InterPro: IPR00978 87.51
PRK08840464 replicative DNA helicase; Provisional 86.82
PRK07004460 replicative DNA helicase; Provisional 85.01
PRK08006471 replicative DNA helicase; Provisional 83.76
PRK06749428 replicative DNA helicase; Provisional 81.42
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function Back     alignment and domain information 
Probab=100.00  E-value=3.2e-54  Score=379.58  Aligned_cols=231  Identities=39%  Similarity=0.635  Sum_probs=198.4

Q ss_pred             hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921            8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD   87 (260)
Q Consensus         8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~   87 (260)
                      =||+.|+++.+..|   +|+++||+|+ +++|+|||||||+.+||++++  ||||+|+|+++||.++++|||+||.++++
T Consensus         4 eln~ll~~~~~~~~---~g~~ili~d~-~~dgsFLlh~~L~~~Lk~~~~--V~fv~~~q~~~HY~~v~~KLG~NL~~~~~   77 (249)
T PF09807_consen    4 ELNSLLNWSPDSVP---PGKLILIEDC-ETDGSFLLHHFLSQYLKAGCK--VCFVAFSQSFSHYNNVAQKLGVNLSAAKE   77 (249)
T ss_pred             HHHHHhcCCCCCCC---CCeEEEEEcC-CCCchhHHHHHHHHHhcCCCc--EEEEEccCCHHHHHHHHHhhEecchHhcc
Confidence            47889988777776   8999999999 999999999999999998877  99999999999999999999999999999


Q ss_pred             CCceEEeeccccc----CCC-CC-CC-------CCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCCh
Q 024921           88 NKRFIFFDMLMLR----CPD-VD-EG-------KSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGS  154 (260)
Q Consensus        88 ~g~~~fvD~l~~~----~~~-~~-~~-------~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~  154 (260)
                      +|||.|||+++..    +.+ .. .+       .++...+++||++|++++++..+  .++++|||||+++|+| +|++.
T Consensus        78 ~gql~fiD~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~L~~L~~~I~~~l~~~~~--~~~~~liIDdls~Ll~-lG~s~  154 (249)
T PF09807_consen   78 KGQLVFIDGLKSSLDLLFDEDSSDEPNPLKFLREDNASSLRSLYEFIQEALSPADS--NGSVVLIIDDLSVLLS-LGVSS  154 (249)
T ss_pred             CCcEEEeehhhhhhhhhhccccccCCccccccccCCcchHHHHHHHHHHHHhhccC--CCCeEEEEeCHHHHHH-cCCCH
Confidence            9999999999943    331 11 11       12345699999999999996443  4679999999999998 69999


Q ss_pred             HHHHHHHHHHHH-hhcccCCeEEEEeeccCCCCCCh-hHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCC
Q 024921          155 DYVLDFLHYCHA-LTSEFDCSLITLNHEDIYSSMER-PTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRL  232 (260)
Q Consensus       155 ~~v~~fi~~l~~-~~~~~~~~lv~l~h~~~~~~~e~-~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~  232 (260)
                      .++++|+||||+ +|.+.++++|+++|.+...++|. +.|++.|.|+||++|+++||+||+||||||+|+|+|++.... 
T Consensus       155 ~~vldF~~ycra~l~~~~~~~lVvl~h~d~~~~~e~~~~l~~~L~h~a~l~i~v~~L~TG~s~DVhGqL~v~~r~~~~~-  233 (249)
T PF09807_consen  155 NDVLDFIHYCRATLCSESNGSLVVLVHCDIDDEDEENDLLLNSLAHMADLVITVEPLPTGYSKDVHGQLTVLWRGNSSS-  233 (249)
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEEecCCCCccchHHHHHHHHHHHhcEEEEecCCCCcccccceEEEEEEEccCCcc-
Confidence            999999999995 58888899999999887654444 459999999999999999999999999999999998876543 


Q ss_pred             CCCCCceeeEeEEEec
Q 024921          233 GRSGNKIHNFHYKVKE  248 (260)
Q Consensus       233 ~~~~~~~~e~lY~v~D  248 (260)
                      +....+.++|||||+|
T Consensus       234 ~~~~~~~~~~~yKv~d  249 (249)
T PF09807_consen  234 GYHRPKTKTYQYKVQD  249 (249)
T ss_pred             ccccccceEEEEeecC
Confidence            3445566799999987

>KOG4723 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>PF10483 Elong_Iki1: Elongator subunit Iki1; InterPro: IPR019519 Histone acetylation protein (Hap) 2 (also known as Elongator complex protein 5) is one of three histone acetyltransferases proteins that, in yeasts, are found associated with elongating forms of RNA polymerase II (Elongator) Back     alignment and domain information
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PLN03186 DNA repair protein RAD51 homolog; Provisional Back     alignment and domain information
>PTZ00035 Rad51 protein; Provisional Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK09519 recA DNA recombination protein RecA; Reviewed Back     alignment and domain information
>TIGR02239 recomb_RAD51 DNA repair protein RAD51 Back     alignment and domain information
>PF05625 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RNA polymerase II elongator complex is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation [, ] Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PHA02542 41 41 helicase; Provisional Back     alignment and domain information
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>KOG4723 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3949 consensus RNA polymerase II elongator complex, subunit ELP4 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09165 replicative DNA helicase; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK05595 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06321 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK07773 replicative DNA helicase; Validated Back     alignment and domain information
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain Back     alignment and domain information
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06749 replicative DNA helicase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
4a8j_C280 Elongator complex protein 6; transcription; 2.10A 2e-33
4a8j_B270 Elongator complex protein 5; transcription; 2.10A 2e-04
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C Length = 280 Back     alignment and structure
 Score =  121 bits (305), Expect = 2e-33
 Identities = 39/236 (16%), Positives = 76/236 (32%), Gaps = 20/236 (8%)

Query: 29  VLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRDN 88
            L+E  V  S S +         S T S+ +   +F +  +++   L KL          
Sbjct: 55  ALVETHVLGSPSSLNESSSSMLPSSTRSHAV-LASFIHEQNYFTNSLNKLKIPS------ 107

Query: 89  KRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEV 148
             +   D L     +    K  +     +   +L        +      ++I+   L+  
Sbjct: 108 NNYNVLDFLSDFIVNNIHNKPRDK----ILSDVLAKFSAAIQNNPTDTIVIIEQPELLLS 163

Query: 149 AANG------GSDYVLDFLHYCHALTSEFDCSLITLNHEDIYS-SMERPTLILQMEYLAD 201
             +G       + ++   L  C  L    +  +  ++  D    S             + 
Sbjct: 164 LVSGLTCSELNNKFITPLLRQCKVLIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSM 223

Query: 202 ILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKI--HNFHYKVKENTVEYFY 255
           I +   PL TG A DV G L V   G       +   +  + + Y  ++ + + FY
Sbjct: 224 INLNLNPLKTGFAKDVTGSLHVCRGGAPIATSNTSLHVVENEYLYLNEKESTKLFY 279
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B Length = 270 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
4a8j_C280 Elongator complex protein 6; transcription; 2.10A 100.0
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 99.25
3bs4_A260 Uncharacterized protein PH0321; structural genomic 99.07
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 99.03
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 98.99
4a8j_B270 Elongator complex protein 5; transcription; 2.10A 98.77
2z43_A324 DNA repair and recombination protein RADA; archaea 98.68
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 98.61
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 98.49
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 98.42
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 98.41
2cvh_A220 DNA repair and recombination protein RADB; filamen 98.36
1xp8_A366 RECA protein, recombinase A; recombination, radior 98.22
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 98.06
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 98.02
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 98.0
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 97.96
1u94_A356 RECA protein, recombinase A; homologous recombinat 97.86
4a8j_A361 Elongator complex protein 4; transcription; 2.10A 97.76
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 97.67
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 97.64
4a74_A231 DNA repair and recombination protein RADA; hydrola 97.63
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 97.54
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 97.49
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 97.41
2r6a_A454 DNAB helicase, replicative helicase; replication, 97.31
3io5_A333 Recombination and repair protein; storage dimer, i 97.3
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 97.27
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 97.2
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 97.1
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 97.0
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 96.77
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 96.33
1tf7_A 525 KAIC; homohexamer, hexamer, circadian clock protei 96.09
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 93.94
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 80.56
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C Back     alignment and structure
Probab=100.00  E-value=3.2e-48  Score=339.71  Aligned_cols=220  Identities=16%  Similarity=0.146  Sum_probs=178.7

Q ss_pred             CCCcEEEEeecCCCCccHHHHHHHHHhcCCCC---------------CCeEEEEEeccCchhHHHHHHHHhccccccccC
Q 024921           24 LSGRVVLIEDCVETSGSFVLHQLVKRSLSPTS---------------SNVIIFVAFANPFSHYDRILRKLGCNLVTQRDN   88 (260)
Q Consensus        24 ~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~---------------~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~~   88 (260)
                      ..+.+++||++++|+++||++++++++|.|.+               +++|+++||+|+++||.+.++|+|+|++     
T Consensus        34 ~~~~L~liT~~~gTsp~WLin~lves~L~G~~~~~n~~~~~~~~~~~~~~Vv~~SF~~~~~fy~~~~~Klgidl~-----  108 (280)
T 4a8j_C           34 NSHNLFFITHQSCTQPLWMINALVETHVLGSPSSLNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIPSN-----  108 (280)
T ss_dssp             SCCEEEEEEECTTSCCHHHHHHHHHHHHHSSCHHHHCC----CCCCCCCEEEEEESSSCHHHHHHHHHHTTCCGG-----
T ss_pred             CCceEEEEccccCCChHHHHHHHHHHHhcCCcccccccccccccCCCCceEEEEEeecCHHHHHHHHHHhCCChh-----
Confidence            46899999999999999999999999996652               2579999999999999999999999994     


Q ss_pred             CceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcC-CChHHH-HHHHHHHHH
Q 024921           89 KRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAAN-GGSDYV-LDFLHYCHA  166 (260)
Q Consensus        89 g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g-~~~~~v-~~fi~~l~~  166 (260)
                       +|+|||+++++|.+...++|..+.++++.+.+..+|...    ..+++||||+|++|+++++ +++.++ .+||..|++
T Consensus       109 -~f~fvD~~tdl~~~~~~~kp~~~~l~~v~~~f~~~i~~~----~~~~vlIldqpdlLLa~t~~it~~~L~~~~I~~L~k  183 (280)
T 4a8j_C          109 -NYNVLDFLSDFIVNNIHNKPRDKILSDVLAKFSAAIQNN----PTDTIVIIEQPELLLSLVSGLTCSELNNKFITPLLR  183 (280)
T ss_dssp             -GEEEEESSTTHHHHHTTTCCHHHHHHHHHHHHHHHHHTS----TTSEEEEEECGGGHHHHSTTCCHHHHHHHTHHHHHH
T ss_pred             -heeEEEecchhhhhcccCCcchhhhHHHHHHHhhhhhcc----CCCeEEEEcChHHHHHhccCCCHHHHHHHHHHHHHH
Confidence             789999999998653123333444455555555555543    2689999999999998874 999999 999999987


Q ss_pred             hhcccCCeEEEEeeccCC--------CCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCC--CCCCC
Q 024921          167 LTSEFDCSLITLNHEDIY--------SSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHR--LGRSG  236 (260)
Q Consensus       167 ~~~~~~~~lv~l~h~~~~--------~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~--~~~~~  236 (260)
                      .|..   .||+++++++-        .+.|+++|+.+|.|+|+++|++|||+||+||||||+|||+||+.+.+  ....+
T Consensus       184 ~~~~---lvvt~saD~pli~~~~~t~~~~e~a~f~~~l~H~A~~visLrpL~TG~AkDVTGvLrItrGg~~~~~~~~~~~  260 (280)
T 4a8j_C          184 QCKV---LIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDVTGSLHVCRGGAPIATSNTSLH  260 (280)
T ss_dssp             TCSE---EEEEEECGGGCCSSCCHHHHTHHHHHHHHHHHHHCSEEEEEECCCC--CCSCCEEEEEEECSSCCCCSCTTCC
T ss_pred             hcce---EEEEeccCccccccCCCCchHHHHHHHHHHHHHHhheEEeecccCCcccccceEEEEEecCCccccccccccc
Confidence            6553   36666665532        13466899999999999999999999999999999999999998764  23567


Q ss_pred             CceeeEeEEEecCcEEEeeC
Q 024921          237 NKIHNFHYKVKENTVEYFYP  256 (260)
Q Consensus       237 ~~~~e~lY~v~D~~Vk~F~r  256 (260)
                      ++|+||+|++++.|||+|+|
T Consensus       261 v~E~EyLY~v~~dgVKvF~R  280 (280)
T 4a8j_C          261 VVENEYLYLNEKESTKLFYR  280 (280)
T ss_dssp             BCCEEEEEEEETTEEEEECC
T ss_pred             ccceeEEEEEcCCcEEEecC
Confidence            89999999998666999998
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 99.23
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 98.81
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 98.0
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 97.92
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 97.9
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 97.79
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 97.75
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 97.43
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 97.38
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 97.21
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 97.17
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 95.81
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=99.23  E-value=2.8e-10  Score=95.10  Aligned_cols=215  Identities=12%  Similarity=0.121  Sum_probs=159.0

Q ss_pred             hHHhhhCCCCCCCCCCCCCcEEEEeecCCCCccHHHHHHHHHhcCCCCCCeEEEEEeccCchhHHHHHHHHhcccccccc
Q 024921            8 LLDRALGLDGPSEPWPLSGRVVLIEDCVETSGSFVLHQLVKRSLSPTSSNVIIFVAFANPFSHYDRILRKLGCNLVTQRD   87 (260)
Q Consensus         8 ~l~~~l~~~~~~~p~~~~~~l~litd~~~t~~sfLl~~~l~~~L~~~~~~~Vvlvs~~~~~~hy~~~~~KlG~nL~~~~~   87 (260)
                      -||.+|+  +.    .|+|++++|....++.-+.|..+++.++++.+.+  |+++++..+...+...++.+|++...+..
T Consensus        14 ~LD~~l~--GG----i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~--~~~is~e~~~~~~~~~~~~~~~~~~~~~~   85 (242)
T d1tf7a2          14 RLDEMCG--GG----FFKDSIILATGATGTGKTLLVSRFVENACANKER--AILFAYEESRAQLLRNAYSWGMDFEEMER   85 (242)
T ss_dssp             HHHHHTT--SS----EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCC--EEEEESSSCHHHHHHHHHTTSCCHHHHHH
T ss_pred             HHHHhhc--CC----CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccc--cceeeccCCHHHHHHHHHHcCCChHHHhh
Confidence            5888886  11    2579999999999999999999999999998877  99999999999999999999999999999


Q ss_pred             CCceEEeecccccCCCCCCCCCCCcchHHHHHHHHHHhcCCCCCCCCcEEEEEeChhHHHHHcCCChHHHHHHHHHHHHh
Q 024921           88 NKRFIFFDMLMLRCPDVDEGKSSEGGLVLLYEKILKTICGLPGDKKDYVTIMIDDISLVEVAANGGSDYVLDFLHYCHAL  167 (260)
Q Consensus        88 ~g~~~fvD~l~~~~~~~~~~~~~~~~l~~L~~~I~~~l~~~~~~~~~~~~iIiDdl~~Ll~~~g~~~~~v~~fi~~l~~~  167 (260)
                      .+.+.++|.....           .....+.+.|...+++.     +..++|||.++.+.  .+.+..++..++..++.+
T Consensus        86 ~~~~~~~~~~~~~-----------~~~~~~~~~i~~~i~~~-----~~~~vviDs~~~~~--~~~~~~~~~~~~~~l~~~  147 (242)
T d1tf7a2          86 QNLLKIVCAYPES-----------AGLEDHLQIIKSEINDF-----KPARIAIDSLSALA--RGVSNNAFRQFVIGVTGY  147 (242)
T ss_dssp             TTSEEECCCCGGG-----------SCHHHHHHHHHHHHHTT-----CCSEEEEECHHHHT--SSSCHHHHHHHHHHHHHH
T ss_pred             cCceEEEEeecch-----------hhHHHHHHHHHHHHHhc-----CCceeeeecchhhh--cCCCHHHHHHHHHHHHHH
Confidence            9999888776532           22455666777777643     45689999999986  356778889999999988


Q ss_pred             hcccCCeEEEEeeccCCCCCChhHHHHHcchhcceEEEeccCCCcCccceeEEEEEEecCCCCCCCCCCCceeeEeEEEe
Q 024921          168 TSEFDCSLITLNHEDIYSSMERPTLILQMEYLADILIKAEPLSTGLATDVHGQLTVLNKGTSHRLGRSGNKIHNFHYKVK  247 (260)
Q Consensus       168 ~~~~~~~lv~l~h~~~~~~~e~~~l~~~L~h~a~~~i~l~pL~TG~a~DVtG~L~v~~~~~~~~~~~~~~~~~e~lY~v~  247 (260)
                      +.+.++++++++|....... ...-...+.|.||.++.++--..|..  ..=.++|.+.....      ...+.+-|.+.
T Consensus       148 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~ad~vi~l~~~~~~~~--~~R~i~v~K~R~~~------~~~~~~~f~I~  218 (242)
T d1tf7a2         148 AKQEEITGLFTNTSDQFMGA-HSITDSHISTITDTIILLQYVEIRGE--MSRAINVFKMRGSW------HDKAIREFMIS  218 (242)
T ss_dssp             HHHTTCEEEEEEECSSSSCC-CSSCSSCCTTTCSEEEEEEEEEETTE--EEEEEEEEEESSSC------CCCBCEEEEEC
T ss_pred             HHHcCCeEEEEEeeEeeccc-cccCCcceeeecceEEEEEEeecCCc--eEEEEEEEecCCCC------CCCeEEEEEEe
Confidence            88888888888885432211 11112347899999998875443321  11135665532211      12345789999


Q ss_pred             cCcEEEeeCC
Q 024921          248 ENTVEYFYPG  257 (260)
Q Consensus       248 D~~Vk~F~rG  257 (260)
                      ++|+++-.+-
T Consensus       219 ~~Gi~i~~~~  228 (242)
T d1tf7a2         219 DKGPDIKDSF  228 (242)
T ss_dssp             SSCEEEEEEC
T ss_pred             CCcEEEcCcc
Confidence            9999987643
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure