Citrus Sinensis ID: 024925

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MASMISTNCAQFSGLRRSSPTQSYSQHVNSHLRLVSSRRPRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEGQ
ccccccccccccccccccccccccccccccccEEccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHcccccEEEEEcccccccccccccccHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHcccEEEEEEcccHHHHHcccHHHHHHHHHHHHHHccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccc
cccccccccHHHcccccccccHHHccccccccHHccccccccccccccccccccEEEEEEccEcccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHccccEEEEEccccccccEcccccccHHHHHHccccEEEEccHHHHHcccccHHHHHHHHHHHHHcccEEEEEEcccHHHHHcccHHHHHHHHHHHHHccccccccEEEEEccHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHccEEEEccc
masmistncaqfsglrrssptqsysqhVNSHLRLvssrrprrssSVVAMassnkffvggnwkcngtkESITKLVSDLNdakleadvdvvvappfvyiDQVKNSLTDRIEIAaqnswvgkggaftGEISVEQLKDIGCKwvvlghserrhvigeddqFIGKKAAYALSEGLGVIACIGEqlqereagktFDVCFQQLKAYadaipswdnvvIAYEpvwaigtgkvatpeQAQEVHAALRDWLKNmsqqtlplkhvlsmegq
masmistncaqfsglrrssptqsysQHVNShlrlvssrrprrsssvvamassnkffvggnwkcngTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAqnswvgkggAFTGEISVEQLKDIGCKWVVLGHSERrhvigeddqfIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNmsqqtlplkhvlsmegq
MASMISTNCAQFSGLRRSSPTQSYSQHVNshlrlvssrrprrsssvvamassNKFFVGGNWKCNGTKESITKLVSDLNDAKLEadvdvvvappFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEGQ
****************************************************NKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLK******************
*****************************************************KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG*
MASMISTNCAQFS*********************************VAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEGQ
**************************************************SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEGQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASMISTNCAQFSGLRRSSPTQSYSQHVNSHLRLVSSRRPRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEGQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q9SKP6315 Triosephosphate isomerase yes no 0.95 0.784 0.745 1e-105
P48496322 Triosephosphate isomerase N/A no 0.919 0.742 0.761 1e-104
Q9M4S8314 Triosephosphate isomerase N/A no 0.888 0.735 0.766 1e-104
P46225298 Triosephosphate isomerase N/A no 0.761 0.664 0.828 9e-98
P48497257 Triosephosphate isomerase N/A no 0.742 0.750 0.653 3e-73
P12863253 Triosephosphate isomerase N/A no 0.730 0.750 0.614 2e-67
P60174286 Triosephosphate isomerase yes no 0.753 0.685 0.627 1e-66
Q5R928249 Triosephosphate isomerase yes no 0.75 0.783 0.625 2e-66
P60175249 Triosephosphate isomerase yes no 0.75 0.783 0.625 2e-66
Q5E956249 Triosephosphate isomerase yes no 0.75 0.783 0.620 4e-66
>sp|Q9SKP6|TPIC_ARATH Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1 Back     alignment and function desciption
 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/259 (74%), Positives = 216/259 (83%), Gaps = 12/259 (4%)

Query: 1   MASMISTNCAQFSGLRRSSPT---------QSYSQHVNSHLRLVSSRRPRRSS--SVVAM 49
           MA+   T    FSGLRR SP          QS+   VNS  RLVSS      S   VVAM
Sbjct: 1   MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRGVVAM 60

Query: 50  ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIE 109
           A S KFFVGGNWKCNGTK+SI KL+SDLN A LEADVDVVV+PPFVYIDQVK+SLTDRI+
Sbjct: 61  AGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRID 120

Query: 110 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEG 169
           I+ QNSWVGKGGAFTGEISVEQLKD+GCKWV+LGHSERRHVIGE D+FIGKKAAYALSEG
Sbjct: 121 ISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEG 180

Query: 170 LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 229
           LGVIACIGE+L+EREAGKTFDVCF QLKA+ADA+PSWDN+V+AYEPVWAIGTGKVA+P+Q
Sbjct: 181 LGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQ 240

Query: 230 AQEVHAALRDWL-KNMSQQ 247
           AQEVH A+R WL KN+S++
Sbjct: 241 AQEVHVAVRGWLKKNVSEE 259

Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 1
>sp|P48496|TPIC_SPIOL Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M4S8|TPIC_FRAAN Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1 Back     alignment and function description
>sp|P46225|TPIC_SECCE Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1 Back     alignment and function description
>sp|P48497|TPIS_STELP Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1 Back     alignment and function description
>sp|P12863|TPIS_MAIZE Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3 Back     alignment and function description
>sp|P60174|TPIS_HUMAN Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R928|TPIS_PONAB Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1 Back     alignment and function description
>sp|P60175|TPIS_PANTR Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2 Back     alignment and function description
>sp|Q5E956|TPIS_BOVIN Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
295687231307 triosephosphate isomerase [Gossypium hir 0.934 0.791 0.781 1e-114
255576721313 triosephosphate isomerase, putative [Ric 0.934 0.776 0.779 1e-112
118487691313 unknown [Populus trichocarpa] 0.907 0.753 0.791 1e-109
225427917324 PREDICTED: triosephosphate isomerase, ch 0.9 0.722 0.811 1e-109
388515189307 unknown [Lotus japonicus] 0.961 0.814 0.747 1e-108
356548333305 PREDICTED: triosephosphate isomerase, ch 0.880 0.750 0.796 1e-108
388507284312 unknown [Medicago truncatula] 0.926 0.772 0.766 1e-107
449458564306 PREDICTED: triosephosphate isomerase, ch 0.942 0.800 0.777 1e-107
359807168304 uncharacterized protein LOC100798459 [Gl 0.907 0.776 0.775 1e-106
224103243315 predicted protein [Populus trichocarpa] 0.907 0.749 0.785 1e-106
>gi|295687231|gb|ADG27841.1| triosephosphate isomerase [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/252 (78%), Positives = 223/252 (88%), Gaps = 9/252 (3%)

Query: 3   SMISTNCAQFSGLRRSSP------TQSYSQHVNSHLRLVSSRRPRRSSSVVAMASSNKFF 56
           +MIST C  F+GL RSSP      +QS+ QH+NS LRL SSR+P R+  V AMA S KFF
Sbjct: 2   AMISTYCPHFNGLHRSSPKLDSSQSQSFLQHINSQLRLASSRKPCRA--VTAMAGSGKFF 59

Query: 57  VGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSW 116
           VGGNWKCNGTK+SITKLVSDLN AKLE DVDVVV+PPFVY+DQV  SLT RIE++AQNSW
Sbjct: 60  VGGNWKCNGTKDSITKLVSDLNSAKLETDVDVVVSPPFVYLDQVTASLTSRIEVSAQNSW 119

Query: 117 VGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACI 176
           +GKGGAFTGEISVEQLKDIGCKWV+LGHSERRH+IGEDDQFIGKKAAYAL+EGLGVIACI
Sbjct: 120 IGKGGAFTGEISVEQLKDIGCKWVILGHSERRHIIGEDDQFIGKKAAYALNEGLGVIACI 179

Query: 177 GEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAA 236
           GE L+EREAGKTFDVCF+QLKA+AD +PSWDN+VIAYEPVWAIGTGKVATP+QAQEVH A
Sbjct: 180 GELLEEREAGKTFDVCFRQLKAFADVVPSWDNIVIAYEPVWAIGTGKVATPQQAQEVHVA 239

Query: 237 LRDWL-KNMSQQ 247
           + DWL KN+S++
Sbjct: 240 VHDWLKKNVSEE 251

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255576721|ref|XP_002529248.1| triosephosphate isomerase, putative [Ricinus communis] gi|223531284|gb|EEF33126.1| triosephosphate isomerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118487691|gb|ABK95670.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225427917|ref|XP_002274871.1| PREDICTED: triosephosphate isomerase, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388515189|gb|AFK45656.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356548333|ref|XP_003542557.1| PREDICTED: triosephosphate isomerase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|388507284|gb|AFK41708.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449458564|ref|XP_004147017.1| PREDICTED: triosephosphate isomerase, chloroplastic-like [Cucumis sativus] gi|449489711|ref|XP_004158393.1| PREDICTED: triosephosphate isomerase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359807168|ref|NP_001241611.1| uncharacterized protein LOC100798459 [Glycine max] gi|255645557|gb|ACU23273.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224103243|ref|XP_002312980.1| predicted protein [Populus trichocarpa] gi|222849388|gb|EEE86935.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:2047072315 TIM "triosephosphate isomerase 0.95 0.784 0.660 1.3e-86
TAIR|locus:2099906254 TPI "triosephosphate isomerase 0.738 0.755 0.574 2.8e-57
UNIPROTKB|P00940248 TPI1 "Triosephosphate isomeras 0.730 0.766 0.594 3.6e-57
UNIPROTKB|D0G7F6248 TPI1 "Triosephosphate isomeras 0.726 0.762 0.592 2.5e-56
UNIPROTKB|P60174286 TPI1 "Triosephosphate isomeras 0.738 0.671 0.590 3.3e-56
ZFIN|ZDB-GENE-020416-4248 tpi1b "triosephosphate isomera 0.742 0.778 0.582 3.3e-56
UNIPROTKB|Q5E956249 TPI1 "Triosephosphate isomeras 0.738 0.771 0.585 4.2e-56
RGD|3896249 Tpi1 "triosephosphate isomeras 0.742 0.775 0.587 5.3e-56
UNIPROTKB|Q29371248 TPI1 "Triosephosphate isomeras 0.726 0.762 0.587 6.8e-56
UNIPROTKB|P54714249 TPI1 "Triosephosphate isomeras 0.738 0.771 0.585 8.6e-56
TAIR|locus:2047072 TIM "triosephosphate isomerase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 171/259 (66%), Positives = 193/259 (74%)

Query:     1 MASMISTNCAQFSGLRRSSPT---------QSYSQHVNXXXXXXXXXXXXXXX--XXXXX 49
             MA+   T    FSGLRR SP          QS+   VN                      
Sbjct:     1 MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRGVVAM 60

Query:    50 XXXNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIE 109
                 KFFVGGNWKCNGTK+SI KL+SDLN A LE          FVYIDQVK+SLTDRI+
Sbjct:    61 AGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRID 120

Query:   110 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEG 169
             I+ QNSWVGKGGAFTGEISVEQLKD+GCKWV+LGHSERRHVIGE D+FIGKKAAYALSEG
Sbjct:   121 ISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEG 180

Query:   170 LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 229
             LGVIACIGE+L+EREAGKTFDVCF QLKA+ADA+PSWDN+V+AYEPVWAIGTGKVA+P+Q
Sbjct:   181 LGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQ 240

Query:   230 AQEVHAALRDWLK-NMSQQ 247
             AQEVH A+R WLK N+S++
Sbjct:   241 AQEVHVAVRGWLKKNVSEE 259
GO:0003824 "catalytic activity" evidence=IEA
GO:0004807 "triose-phosphate isomerase activity" evidence=IEA;ISS;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0019253 "reductive pentose-phosphate cycle" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0006642 "triglyceride mobilization" evidence=IMP
GO:0009658 "chloroplast organization" evidence=IMP
GO:0019563 "glycerol catabolic process" evidence=IMP
GO:0032504 "multicellular organism reproduction" evidence=IMP
GO:0046166 "glyceraldehyde-3-phosphate biosynthetic process" evidence=IDA
GO:0080022 "primary root development" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006569 "tryptophan catabolic process" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0032880 "regulation of protein localization" evidence=RCA
TAIR|locus:2099906 TPI "triosephosphate isomerase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P00940 TPI1 "Triosephosphate isomerase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|D0G7F6 TPI1 "Triosephosphate isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P60174 TPI1 "Triosephosphate isomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020416-4 tpi1b "triosephosphate isomerase 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E956 TPI1 "Triosephosphate isomerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|3896 Tpi1 "triosephosphate isomerase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q29371 TPI1 "Triosephosphate isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P54714 TPI1 "Triosephosphate isomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6BMB8TPIS_DEBHA5, ., 3, ., 1, ., 10.53920.73070.7661yesno
Q29371TPIS_PIG5, ., 3, ., 1, ., 10.61850.74610.7822yesno
Q9SKP6TPIC_ARATH5, ., 3, ., 1, ., 10.74510.950.7841yesno
P00940TPIS_CHICK5, ., 3, ., 1, ., 10.61130.74230.7782yesno
Q9M4S8TPIC_FRAAN5, ., 3, ., 1, ., 10.76620.88840.7356N/Ano
P60174TPIS_HUMAN5, ., 3, ., 1, ., 10.62750.75380.6853yesno
P60175TPIS_PANTR5, ., 3, ., 1, ., 10.62560.750.7831yesno
B0BM40TPIS_XENTR5, ., 3, ., 1, ., 10.58880.75380.7903yesno
Q5E956TPIS_BOVIN5, ., 3, ., 1, ., 10.62050.750.7831yesno
Q5R928TPIS_PONAB5, ., 3, ., 1, ., 10.62560.750.7831yesno
P46225TPIC_SECCE5, ., 3, ., 1, ., 10.82820.76150.6644N/Ano
Q750Y8TPIS_ASHGO5, ., 3, ., 1, ., 10.52120.71920.7540yesno
P54714TPIS_CANFA5, ., 3, ., 1, ., 10.62050.750.7831yesno
P15426TPIS_MACMU5, ., 3, ., 1, ., 10.61800.76150.7951yesno
P04828TPIS_EMENI5, ., 3, ., 1, ., 10.55720.73070.7630yesno
Q90XG0TPISB_DANRE5, ., 3, ., 1, ., 10.59890.75380.7903yesno
Q10657TPIS_CAEEL5, ., 3, ., 1, ., 10.56020.73460.7732yesno
P17751TPIS_MOUSE5, ., 3, ., 1, ., 10.60.750.6521yesno
P48496TPIC_SPIOL5, ., 3, ., 1, ., 10.76170.91920.7422N/Ano
P00942TPIS_YEAST5, ., 3, ., 1, ., 10.53720.71920.7540yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.3.1.10.991
3rd Layer5.3.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_IX1362
RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (315 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00080776
RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (402 aa)
•••• •• 0.954
grail3.0154005402
phosphoglycerate kinase (EC-2.7.7.2 2.7.2.3) (402 aa)
•••• •• 0.954
estExt_fgenesh4_pm.C_LG_VIII0335
phosphoglycerate kinase (481 aa)
•••  •• 0.947
estExt_fgenesh4_pm.C_LG_X0655
phosphoglycerate kinase (481 aa)
•••  •• 0.947
estExt_Genewise1_v1.C_LG_XIV0740
transketolase (EC-2.2.1.1) (635 aa)
     •• 0.915
fgenesh4_pm.C_LG_X000906
transketolase (EC-2.2.1.1) (656 aa)
     •• 0.913
eugene3.00021349
SubName- Full=Putative uncharacterized protein; (745 aa)
     •• 0.913
estExt_Genewise1_v1.C_LG_XII1463
SubName- Full=Putative uncharacterized protein; (338 aa)
••   •• 0.913
estExt_Genewise1_v1.C_LG_I2848
hypothetical protein (338 aa)
••   •• 0.913
eugene3.00150702
SubName- Full=Putative uncharacterized protein; (338 aa)
••   •• 0.912

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
PLN02429315 PLN02429, PLN02429, triosephosphate isomerase 1e-124
cd00311242 cd00311, TIM, Triosephosphate isomerase (TIM) is a 1e-101
PTZ00333255 PTZ00333, PTZ00333, triosephosphate isomerase; Pro 5e-99
PLN02561253 PLN02561, PLN02561, triosephosphate isomerase 1e-97
PRK00042250 PRK00042, tpiA, triosephosphate isomerase; Provisi 7e-91
pfam00121242 pfam00121, TIM, Triosephosphate isomerase 9e-91
COG0149251 COG0149, TpiA, Triosephosphate isomerase [Carbohyd 6e-81
PRK13962645 PRK13962, PRK13962, bifunctional phosphoglycerate 2e-64
PRK14566260 PRK14566, PRK14566, triosephosphate isomerase; Pro 5e-52
TIGR00419205 TIGR00419, tim, triosephosphate isomerase 3e-47
PRK14565237 PRK14565, PRK14565, triosephosphate isomerase; Pro 2e-44
PRK14567253 PRK14567, PRK14567, triosephosphate isomerase; Pro 4e-42
PRK14905 355 PRK14905, PRK14905, triosephosphate isomerase/PTS 4e-27
PRK15492260 PRK15492, PRK15492, triosephosphate isomerase; Pro 5e-26
PRK04302223 PRK04302, PRK04302, triosephosphate isomerase; Pro 2e-10
>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase Back     alignment and domain information 
 Score =  354 bits (910), Expect = e-124
 Identities = 195/262 (74%), Positives = 218/262 (83%), Gaps = 18/262 (6%)

Query: 1   MASMISTNCAQFSGLRRSSPT---------QSYSQHVNSHLRLVSS-----RRPRRSSSV 46
           MA+   T    FSGLRR SP          QS+   VNS  RLVSS     R PR    V
Sbjct: 1   MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPR---GV 57

Query: 47  VAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTD 106
           VAMA S KFFVGGNWKCNGTK+SI KL+SDLN A LEADVDVVV+PPFVYIDQVK+SLTD
Sbjct: 58  VAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTD 117

Query: 107 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYAL 166
           RI+I+ QNSWVGKGGAFTGEISVEQLKD+GCKWV+LGHSERRHVIGE D+FIGKKAAYAL
Sbjct: 118 RIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYAL 177

Query: 167 SEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVAT 226
           SEGLGVIACIGE+L+EREAGKTFDVCF QLKA+ADA+PSWDN+V+AYEPVWAIGTGKVA+
Sbjct: 178 SEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVAS 237

Query: 227 PEQAQEVHAALRDWL-KNMSQQ 247
           P+QAQEVH A+R WL KN+S++
Sbjct: 238 PQQAQEVHVAVRGWLKKNVSEE 259

Length = 315
>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate Back     alignment and domain information
>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase Back     alignment and domain information
>gnl|CDD|234589 PRK00042, tpiA, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|215732 pfam00121, TIM, Triosephosphate isomerase Back     alignment and domain information
>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|184749 PRK14566, PRK14566, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase Back     alignment and domain information
>gnl|CDD|237758 PRK14565, PRK14565, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional Back     alignment and domain information
>gnl|CDD|185389 PRK15492, PRK15492, triosephosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|235274 PRK04302, PRK04302, triosephosphate isomerase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
PLN02429315 triosephosphate isomerase 100.0
KOG1643247 consensus Triosephosphate isomerase [Carbohydrate 100.0
PRK14567253 triosephosphate isomerase; Provisional 100.0
PRK00042250 tpiA triosephosphate isomerase; Provisional 100.0
PRK14566260 triosephosphate isomerase; Provisional 100.0
PTZ00333255 triosephosphate isomerase; Provisional 100.0
PF00121244 TIM: Triosephosphate isomerase; InterPro: IPR00065 100.0
PLN02561253 triosephosphate isomerase 100.0
cd00311242 TIM Triosephosphate isomerase (TIM) is a glycolyti 100.0
PRK15492260 triosephosphate isomerase; Provisional 100.0
COG0149251 TpiA Triosephosphate isomerase [Carbohydrate trans 100.0
PRK13962645 bifunctional phosphoglycerate kinase/triosephospha 100.0
PRK14905 355 triosephosphate isomerase/PTS system glucose/sucro 100.0
PRK14565237 triosephosphate isomerase; Provisional 100.0
TIGR00419205 tim triosephosphate isomerase. Triosephosphate iso 100.0
PRK04302223 triosephosphate isomerase; Provisional 100.0
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 94.34
PRK11840326 bifunctional sulfur carrier protein/thiazole synth 94.32
PLN02591250 tryptophan synthase 92.16
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 91.0
PRK13125244 trpA tryptophan synthase subunit alpha; Provisiona 83.3
>PLN02429 triosephosphate isomerase Back     alignment and domain information 
Probab=100.00  E-value=4.3e-77  Score=553.97  Aligned_cols=251  Identities=73%  Similarity=1.167  Sum_probs=227.4

Q ss_pred             cccccCCcccCCCCCCCCcccccc------------cccccCCCCCCcchhhhhhhcCcceEEeecccccCHHHHHHHHH
Q 024925            8 NCAQFSGLRRSSPTQSYSQHVNSH------------LRLVSSRRPRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVS   75 (260)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~m~~~rk~~IigNWKmn~t~~~~~~l~~   75 (260)
                      ..++|.|+||.+++...+++..++            .+..++ .+++.|+++.|.+.+||||+||||||++.+++.+|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~i~gNWKmn~t~~~~~~~~~   86 (315)
T PLN02429          8 APPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSS-SHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLIS   86 (315)
T ss_pred             cCcccccccCCCccccccccccccchhhcccccccccccccc-ccccccccccccccCCEEEEEECCcCCCHHHHHHHHH
Confidence            446799999999877765533221            122223 4477899999999999999999999999999999999


Q ss_pred             HHhhccccCCceEEEcCCcccHHHHHHHcCCCceEeeeccccCCCcccccccCHHHHHhcCCCEEEeeecccccccCCCH
Q 024925           76 DLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDD  155 (260)
Q Consensus        76 ~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~~~i~vgAQnv~~~~~GA~TGEISa~mLkd~G~~~viIGHSERR~~f~Etd  155 (260)
                      +++......+++|+|||||++|..+.+.+.+++.+|||||++.+.||||||||++||+|+||+||||||||||++|+|||
T Consensus        87 ~l~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~GayTGEVSa~mLkd~Gv~~ViiGHSERR~~f~Etd  166 (315)
T PLN02429         87 DLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKD  166 (315)
T ss_pred             HHHhcccCCCceEEEeCCHHHHHHHHHHhcCCCeEEecccCCCCCCCccCcCCHHHHHHcCCCEEEeCccccCCCCCcCH
Confidence            99764333469999999999999998877667999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCceEEEEcccccccCCCCCCHHHHHHHHH
Q 024925          156 QFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHA  235 (260)
Q Consensus       156 ~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGTG~~aspe~iqe~~~  235 (260)
                      +.|++|+++|+++||+||+||||++++||+|++.++|.+||+.+++.++++++++|||||+||||||++|+|++++++|+
T Consensus       167 ~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~ivIAYEPvWAIGTGk~as~e~~~~v~~  246 (315)
T PLN02429        167 EFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHV  246 (315)
T ss_pred             HHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccceEEEECCHHHhCCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCcccceeeecccC
Q 024925          236 ALRDWLKNMSQQTLPLKHVLSMEG  259 (260)
Q Consensus       236 ~IR~~l~~~~~~~~a~~~~~~~~~  259 (260)
                      +||++|+++++++++.+..|.|-|
T Consensus       247 ~IR~~l~~~~~~~va~~irILYGG  270 (315)
T PLN02429        247 AVRGWLKKNVSEEVASKTRIIYGG  270 (315)
T ss_pred             HHHHHHHHHhhhhhccCceEEEcC
Confidence            999999999999999999999977

>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14567 triosephosphate isomerase; Provisional Back     alignment and domain information
>PRK00042 tpiA triosephosphate isomerase; Provisional Back     alignment and domain information
>PRK14566 triosephosphate isomerase; Provisional Back     alignment and domain information
>PTZ00333 triosephosphate isomerase; Provisional Back     alignment and domain information
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5 Back     alignment and domain information
>PLN02561 triosephosphate isomerase Back     alignment and domain information
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate Back     alignment and domain information
>PRK15492 triosephosphate isomerase; Provisional Back     alignment and domain information
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional Back     alignment and domain information
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional Back     alignment and domain information
>PRK14565 triosephosphate isomerase; Provisional Back     alignment and domain information
>TIGR00419 tim triosephosphate isomerase Back     alignment and domain information
>PRK04302 triosephosphate isomerase; Provisional Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
1sw3_A248 Triosephosphate Isomerase From Gallus Gallus, Loop 2e-61
1tph_1247 1.8 Angstroms Crystal Structure Of Wild Type Chicke 7e-61
1tpb_1247 Offset Of A Catalytic Lesion By A Bound Water Solub 2e-60
1spq_A247 Understanding Protein Lids: Structural Analysis Of 2e-60
1tpw_A247 Triosephosphate Isomerase Drinks Water To Keep Heal 2e-60
1tim_A247 Structure Of Triose Phosphate Isomerase From Chicke 4e-60
1r2r_A248 Crystal Structure Of Rabbit Muscle Triosephosphate 4e-60
1wyi_A250 Human Triosephosphate Isomerase Of New Crystal Form 4e-60
1hti_A248 Crystal Structure Of Recombinant Human Triosephosph 5e-60
1tpu_A247 S96p Change Is A Second-Site Suppressor For H95n Sl 5e-60
1tpc_1247 Offset Of A Catalytic Lesion By A Bound Water Solub 6e-60
1sw7_A248 Triosephosphate Isomerase From Gallus Gallus, Loop 7e-60
2vom_A250 Structural Basis Of Human Triosephosphate Isomerase 1e-59
1sw0_A248 Triosephosphate Isomerase From Gallus Gallus, Loop 2e-59
1sq7_A247 Understanding Protein Lids: Structural Analysis Of 2e-59
1tpv_A247 S96p Change Is A Second-Site Suppressor For H95n Sl 2e-59
1su5_A247 Understanding Protein Lids: Structural Analysis Of 2e-59
1ssd_A247 Understanding Protein Lids: Structural Analysis Of 3e-59
2i9e_A259 Structure Of Triosephosphate Isomerase Of Tenebrio 9e-54
3th6_A249 Crystal Structure Of Triosephosphate Isomerase From 1e-53
1ypi_A247 Structure Of Yeast Triosephosphate Isomerase At 1.9 7e-52
4ff7_A248 Structure Of C126s Mutant Of Saccharomyces Cerevisi 6e-51
3ypi_A247 Electrophilic Catalysis In Triosephosphase Isomeras 6e-51
1mo0_A275 Structural Genomics Of Caenorhabditis Elegans: Trio 3e-50
1i45_A248 Yeast Triosephosphate Isomerase (Mutant) Length = 2 1e-49
1nf0_A247 Triosephosphate Isomerase In Complex With Dhap Leng 1e-49
1qds_A251 Superstable E65q Mutant Of Leishmania Mexicana Trio 5e-47
2oma_A250 Crystallographic Analysis Of A Chemically Modified 8e-47
1ci1_A251 Crystal Structure Of Triosephosphate Isomerase From 1e-46
1tcd_A249 Trypanosoma Cruzi Triosephosphate Isomerase Length 1e-46
1amk_A251 Leishmania Mexicana Triose Phosphate Isomerase Leng 1e-46
3qsr_A255 Crystal Structure Of Trichomonas Vaginalis Trioseph 9e-45
3qst_A255 Crystal Structure Of Trichomonas Vaginalis Trioseph 1e-44
3q37_A251 Identification Of Amino Acids That Account For Long 2e-44
1m6j_A261 Crystal Structure Of Triosephosphate Isomerase From 6e-43
4tim_A250 Crystallographic And Molecular Modeling Studies On 7e-42
3tim_A250 The Crystal Structure Of The "open" And The "closed 8e-42
2yc6_A257 Crystal Structure Of A Triple Mutant (A198v, C202a 1e-41
2dp3_A257 Crystal Structure Of A Double Mutant (C202aA198V) O 2e-41
2yc7_A257 Crystal Structure Of A Mutant (C202a) Of Triosephos 2e-41
2yc8_A255 Crystal Structure Of A Double Mutant (C202a And C22 2e-41
2v0t_A250 The A178l Mutation In The C-Terminal Hinge Of The F 3e-41
1kv5_A250 Structure Of Trypanosoma Brucei Brucei Tim With The 4e-41
2j24_A250 The Functional Role Of The Conserved Active Site Pr 8e-41
2v5b_A244 The Monomerization Of Triosephosphate Isomerase Fro 1e-40
3pf3_A257 Crystal Structure Of A Mutant (C202a) Of Triosephos 2e-40
2vfd_A248 Crystal Structure Of The F96s Mutant Of Plasmodium 2e-40
3krs_A271 Structure Of Triosephosphate Isomerase From Cryptos 4e-40
2vff_A248 Crystal Structure Of The F96h Mutant Of Plasmodium 9e-40
1ydv_A248 Triosephosphate Isomerase (Tim) Length = 248 1e-39
3psw_A248 Structure Of E97q Mutant Of Tim From Plasmodium Fal 3e-39
3psv_A248 Structure Of E97d Mutant Of Tim From Plasmodium Fal 3e-39
2vfh_A248 Crystal Structure Of The F96w Mutant Of Plasmodium 4e-39
1vga_A248 Structures Of Unligated And Inhibitor Complexes Of 8e-39
1b9b_A255 Triosephosphate Isomerase Of Thermotoga Maritima Le 9e-39
3pwa_A248 Structure Of C126a Mutant Of Plasmodium Falciparum 2e-38
3pvf_A248 Structure Of C126s Mutant Of Plasmodium Falciparum 2e-38
1tre_A255 The Structure Of Triosephosphate Isomerase From Esc 1e-35
2wsq_A242 Monotim Mutant Rmm0-1, Dimeric Form. Length = 242 1e-35
1tri_A243 The Crystal Structure Of An Engineered Monomeric Tr 1e-35
1tmh_A254 Modular Mutagenesis Of A Tim-barrel Enzyme: The Cry 1e-35
2wsr_A242 Monotim Mutant Rmm0-1, Monomeric Form Length = 242 2e-35
4iot_A255 High-resolution Structure Of Triosephosphate Isomer 2e-35
1tti_A243 Three New Crystal Structures Of Point Mutation Vari 2e-35
1aw1_A256 Triosephosphate Isomerase Of Vibrio Marinus Complex 4e-35
1ml1_A243 Protein Engineering With Monomeric Triosephosphate 1e-34
1mss_A243 Large Scale Structural Rearrangements Of The Front 7e-34
2y6z_A256 Crystallographic Structure Of Gm23 An Example Of Ca 7e-33
2y70_A245 Crystallographic Structure Of Gm23, Mutant G89d, An 1e-32
1dkw_A238 Crystal Structure Of Triose-Phosphate Isomerase Wit 1e-32
1yya_A250 Crystal Structure Of Tt0473, Putative Triosephospha 3e-32
2vek_A238 Structure-Based Enzyme Engineering Efforts With An 5e-32
2vei_A238 Structure-Based Enzyme Engineering Efforts With An 5e-32
2v2d_A242 The A178l Mutation In The C-Terminal Hinge Of The F 2e-31
2btm_A252 Does The His12-Lys13 Pair Play A Role In The Adapta 5e-31
3m9y_A254 Crystal Structure Of Triosephosphate Isomerase From 7e-31
3uwu_A261 Crystal Structure Of Staphylococcus Aureus Trioseph 9e-31
1btm_A252 Triosephosphate Isomerase (Tim) Complexed With 2- P 1e-29
3kxq_A275 Crystal Structure Of Triosephosphate Isomerase From 1e-26
4g1k_A272 Crystal Structure Of Triosephosphate Isomerase From 1e-25
3gvg_A283 Crystal Structure Of Triosephosphate Isomerase From 9e-24
3ta6_A267 Structure Of Mycobacterium Tuberculosis Triosephosp 1e-23
2jgq_A233 Kinetics And Structural Properties Of Triosephospha 5e-20
3s6d_A310 Crystal Structure Of A Putative Triosephosphate Iso 8e-17
2h6r_A219 Crystal Structure Of Triosephosphate Isomerase (Tim 2e-04
>pdb|1SW3|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Mutant T175v Length = 248 Back     alignment and structure 
Iteration: 1

 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 136/191 (71%)
Query: 53  NKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAA 112
            KFFVGGNWK NG K+S+ +L+  LN AKL            +Y+D  +  L  +I +AA
Sbjct: 4   RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAA 63
Query: 113 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 172
           QN +    GAFTGEIS   +KDIG  WV+LGHSERRHV GE D+ IG+K A+AL+EGLGV
Sbjct: 64  QNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGV 123
Query: 173 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQE 232
           IACIGE+L EREAG T  V F+Q KA AD +  W  VV+AYEPVWAIGTGKVATP+QAQE
Sbjct: 124 IACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKVATPQQAQE 183
Query: 233 VHAALRDWLKN 243
           VH  LR WLK+
Sbjct: 184 VHEKLRGWLKS 194
>pdb|1TPH|1 Chain 1, 1.8 Angstroms Crystal Structure Of Wild Type Chicken Triosephosphate Isomerase-Phosphoglycolohydroxamate Complex Length = 247 Back     alignment and structure
>pdb|1TPB|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble Length = 247 Back     alignment and structure
>pdb|1SPQ|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1TPW|A Chain A, Triosephosphate Isomerase Drinks Water To Keep Healthy Length = 247 Back     alignment and structure
>pdb|1TIM|A Chain A, Structure Of Triose Phosphate Isomerase From Chicken Muscle Length = 247 Back     alignment and structure
>pdb|1R2R|A Chain A, Crystal Structure Of Rabbit Muscle Triosephosphate Isomerase Length = 248 Back     alignment and structure
>pdb|1WYI|A Chain A, Human Triosephosphate Isomerase Of New Crystal Form Length = 250 Back     alignment and structure
>pdb|1HTI|A Chain A, Crystal Structure Of Recombinant Human Triosephosphate Isomerase At 2.8 Angstroms Resolution. Triosephosphate Isomerase Related Human Genetic Disorders And Comparison With The Trypanosomal Enzyme Length = 248 Back     alignment and structure
>pdb|1TPU|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish Mutant Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1TPC|1 Chain 1, Offset Of A Catalytic Lesion By A Bound Water Soluble Length = 247 Back     alignment and structure
>pdb|1SW7|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Mutant K174n, T175s, A176s Length = 248 Back     alignment and structure
>pdb|2VOM|A Chain A, Structural Basis Of Human Triosephosphate Isomerase Deficiency. Mutation E104d And Correlation To Solvent Perturbation. Length = 250 Back     alignment and structure
>pdb|1SW0|A Chain A, Triosephosphate Isomerase From Gallus Gallus, Loop 6 Hinge Mutant K174l, T175w Length = 248 Back     alignment and structure
>pdb|1SQ7|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1TPV|A Chain A, S96p Change Is A Second-Site Suppressor For H95n Sluggish Mutant Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1SU5|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|1SSD|A Chain A, Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase Length = 247 Back     alignment and structure
>pdb|2I9E|A Chain A, Structure Of Triosephosphate Isomerase Of Tenebrio Molitor Length = 259 Back     alignment and structure
>pdb|3TH6|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Rhipicephalus (Boophilus) Microplus. Length = 249 Back     alignment and structure
>pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9- Angstroms Resolution Length = 247 Back     alignment and structure
>pdb|4FF7|A Chain A, Structure Of C126s Mutant Of Saccharomyces Cerevisiae Triosephosphate Isomerase Length = 248 Back     alignment and structure
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase: The Role Of Histidine-95 Length = 247 Back     alignment and structure
>pdb|1MO0|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Triose Phosphate Isomerase Length = 275 Back     alignment and structure
>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant) Length = 248 Back     alignment and structure
>pdb|1NF0|A Chain A, Triosephosphate Isomerase In Complex With Dhap Length = 247 Back     alignment and structure
>pdb|1QDS|A Chain A, Superstable E65q Mutant Of Leishmania Mexicana Triosephosphate Isomerase (Tim) Length = 251 Back     alignment and structure
>pdb|2OMA|A Chain A, Crystallographic Analysis Of A Chemically Modified Triosephosphate Isomerase From Trypanosoma Cruzi With Dithiobenzylamine (dtba) Length = 250 Back     alignment and structure
>pdb|1CI1|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Trypanosoma Cruzi In Hexane Length = 251 Back     alignment and structure
>pdb|1TCD|A Chain A, Trypanosoma Cruzi Triosephosphate Isomerase Length = 249 Back     alignment and structure
>pdb|1AMK|A Chain A, Leishmania Mexicana Triose Phosphate Isomerase Length = 251 Back     alignment and structure
>pdb|3QSR|A Chain A, Crystal Structure Of Trichomonas Vaginalis Triosephosphate Isomerase Tvag_497370 Gene (Ile-45 Variant) Length = 255 Back     alignment and structure
>pdb|3QST|A Chain A, Crystal Structure Of Trichomonas Vaginalis Triosephosphate Isomerase Tvag_096350 Gene (Val-45 Variant) Length = 255 Back     alignment and structure
>pdb|3Q37|A Chain A, Identification Of Amino Acids That Account For Long-Range Interactions In Proteins Using Two Triosephosphate Isomerases From Pathogenic Trypanosomes. Length = 251 Back     alignment and structure
>pdb|1M6J|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Entamoeba Histolytica Length = 261 Back     alignment and structure
>pdb|4TIM|A Chain A, Crystallographic And Molecular Modeling Studies On Trypanosomal Triosephosphate Isomerase: A Critical Assessment Of The Predicted And Observed Structures Of The Complex With 2-Phosphoglycerate Length = 250 Back     alignment and structure
>pdb|3TIM|A Chain A, The Crystal Structure Of The "open" And The "closed" Conformation Of The Flexible Loop Of Trypanosomal Triosephosphate Isomerase Length = 250 Back     alignment and structure
>pdb|2YC6|A Chain A, Crystal Structure Of A Triple Mutant (A198v, C202a And C222n) Of Triosephosphate Isomerase From Giardia Lamblia Complexed With 2-Phosphoglycolic Acid Length = 257 Back     alignment and structure
>pdb|2DP3|A Chain A, Crystal Structure Of A Double Mutant (C202aA198V) OF TRIOSEPHOSPHATE Isomerase From Giardia Lamblia Length = 257 Back     alignment and structure
>pdb|2YC7|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate Isomerase From Giardia Lamblia Complexed With 2-Phosphoglycolic Acid Length = 257 Back     alignment and structure
>pdb|2YC8|A Chain A, Crystal Structure Of A Double Mutant (C202a And C222n) Of Triosephosphate Isomerase From Giardia Lamblia. Length = 255 Back     alignment and structure
>pdb|2V0T|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More Closed Conformation Of This Hinge Region In Dimeric And Monomeric Tim Length = 250 Back     alignment and structure
>pdb|1KV5|A Chain A, Structure Of Trypanosoma Brucei Brucei Tim With The Salt-Bridge- Forming Residue Arg191 Mutated To Ser Length = 250 Back     alignment and structure
>pdb|2J24|A Chain A, The Functional Role Of The Conserved Active Site Proline Of Triosephosphate Isomerase Length = 250 Back     alignment and structure
>pdb|2V5B|A Chain A, The Monomerization Of Triosephosphate Isomerase From Trypanosoma Cruzi Length = 244 Back     alignment and structure
>pdb|3PF3|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate Isomerase From Giardia Lamblia Derivatized With Mmts Length = 257 Back     alignment and structure
>pdb|2VFD|A Chain A, Crystal Structure Of The F96s Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Length = 248 Back     alignment and structure
>pdb|3KRS|A Chain A, Structure Of Triosephosphate Isomerase From Cryptosporidium Parvum At 1.55a Resolution Length = 271 Back     alignment and structure
>pdb|2VFF|A Chain A, Crystal Structure Of The F96h Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Length = 248 Back     alignment and structure
>pdb|1YDV|A Chain A, Triosephosphate Isomerase (Tim) Length = 248 Back     alignment and structure
>pdb|3PSW|A Chain A, Structure Of E97q Mutant Of Tim From Plasmodium Falciparum Length = 248 Back     alignment and structure
>pdb|3PSV|A Chain A, Structure Of E97d Mutant Of Tim From Plasmodium Falciparum Length = 248 Back     alignment and structure
>pdb|2VFH|A Chain A, Crystal Structure Of The F96w Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Complexed With 3- Phosphoglycerate Length = 248 Back     alignment and structure
>pdb|1VGA|A Chain A, Structures Of Unligated And Inhibitor Complexes Of W168f Mutant Of Triosephosphate Isomerase From Plasmodium Falciparum Length = 248 Back     alignment and structure
>pdb|1B9B|A Chain A, Triosephosphate Isomerase Of Thermotoga Maritima Length = 255 Back     alignment and structure
>pdb|3PWA|A Chain A, Structure Of C126a Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Length = 248 Back     alignment and structure
>pdb|3PVF|A Chain A, Structure Of C126s Mutant Of Plasmodium Falciparum Triosephosphate Isomerase Complexed With Pga Length = 248 Back     alignment and structure
>pdb|1TRE|A Chain A, The Structure Of Triosephosphate Isomerase From Escherichia Coli Determined At 2.6 Angstrom Resolution Length = 255 Back     alignment and structure
>pdb|2WSQ|A Chain A, Monotim Mutant Rmm0-1, Dimeric Form. Length = 242 Back     alignment and structure
>pdb|1TRI|A Chain A, The Crystal Structure Of An Engineered Monomeric Triosephosphate Isomerase, Monotim: The Correct Modelling Of An Eight-Residue Loop Length = 243 Back     alignment and structure
>pdb|1TMH|A Chain A, Modular Mutagenesis Of A Tim-barrel Enzyme: The Crystal Structure Of A Chimeric E. Coli Tim Having The Eighth (beta-alpha)-unit Replaced By The Equivalent Unit Of Chicken Tim Length = 254 Back     alignment and structure
>pdb|2WSR|A Chain A, Monotim Mutant Rmm0-1, Monomeric Form Length = 242 Back     alignment and structure
>pdb|4IOT|A Chain A, High-resolution Structure Of Triosephosphate Isomerase From E. Coli Length = 255 Back     alignment and structure
>pdb|1TTI|A Chain A, Three New Crystal Structures Of Point Mutation Variants Of Monotim: Conformational Flexibility Of Loop-1,Loop-4 And Loop-8 Length = 243 Back     alignment and structure
>pdb|1AW1|A Chain A, Triosephosphate Isomerase Of Vibrio Marinus Complexed With 2-Phosphoglycolate Length = 256 Back     alignment and structure
>pdb|1ML1|A Chain A, Protein Engineering With Monomeric Triosephosphate Isomerase: The Modelling And Structure Verification Of A Seven Residue Loop Length = 243 Back     alignment and structure
>pdb|1MSS|A Chain A, Large Scale Structural Rearrangements Of The Front Loops In Monomerised Triosephosphate Isomerase, As Deduced From The Comparison Of The Structural Properties Of Monotim And Its Point Mutation Variant Monoss Length = 243 Back     alignment and structure
>pdb|2Y6Z|A Chain A, Crystallographic Structure Of Gm23 An Example Of Catalytic Migration From Tim To Thiamin Phosphate Synthase Length = 256 Back     alignment and structure
>pdb|2Y70|A Chain A, Crystallographic Structure Of Gm23, Mutant G89d, An Example Of Catalytic Migration From Tim To Thiamin Phosphate Synthase. Length = 245 Back     alignment and structure
>pdb|1DKW|A Chain A, Crystal Structure Of Triose-Phosphate Isomerase With Modified Substrate Binding Site Length = 238 Back     alignment and structure
>pdb|1YYA|A Chain A, Crystal Structure Of Tt0473, Putative Triosephosphate Isomerase From Thermus Thermophilus Hb8 Length = 250 Back     alignment and structure
>pdb|2VEK|A Chain A, Structure-Based Enzyme Engineering Efforts With An Inactive Monomeric Tim Variant: The Importance Of A Single Point Mutation For Generating An Active Site With Suitable Binding Properties Length = 238 Back     alignment and structure
>pdb|2VEI|A Chain A, Structure-Based Enzyme Engineering Efforts With An Inactive Monomeric Tim Variant: The Importance Of A Single Point Mutation For Generating An Active Site With Suitable Binding Properties Length = 238 Back     alignment and structure
>pdb|2V2D|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More Closed Conformation Of This Hinge Region In Dimeric And Monomeric Tim Length = 242 Back     alignment and structure
>pdb|2BTM|A Chain A, Does The His12-Lys13 Pair Play A Role In The Adaptation Of Thermophilic Tims To High Temperatures? Length = 252 Back     alignment and structure
>pdb|3M9Y|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Methicillin Resistant Staphylococcus Aureus At 1.9 Angstrom Resolution Length = 254 Back     alignment and structure
>pdb|3UWU|A Chain A, Crystal Structure Of Staphylococcus Aureus Triosephosphate Isomerase Complexed With Glycerol-3-Phosphate Length = 261 Back     alignment and structure
>pdb|1BTM|A Chain A, Triosephosphate Isomerase (Tim) Complexed With 2- Phosphoglycolic Acid Length = 252 Back     alignment and structure
>pdb|3KXQ|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Bartonella Henselae At 1.6a Resolution Length = 275 Back     alignment and structure
>pdb|4G1K|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Burkholderia Thailandensis Length = 272 Back     alignment and structure
>pdb|3GVG|A Chain A, Crystal Structure Of Triosephosphate Isomerase From Mycobacterium Tuberculosis Length = 283 Back     alignment and structure
>pdb|3TA6|A Chain A, Structure Of Mycobacterium Tuberculosis Triosephosphate Isomerase Length = 267 Back     alignment and structure
>pdb|2JGQ|A Chain A, Kinetics And Structural Properties Of Triosephosphate Isomerase From Helicobacter Pylori Length = 233 Back     alignment and structure
>pdb|3S6D|A Chain A, Crystal Structure Of A Putative Triosephosphate Isomerase From Coccidioides Immitis Length = 310 Back     alignment and structure
>pdb|2H6R|A Chain A, Crystal Structure Of Triosephosphate Isomerase (Tim) From Methanocaldococcus Jannaschii Length = 219 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
1mo0_A275 TIM, triosephosphate isomerase; structural genomic 1e-124
1r2r_A248 TIM, triosephosphate isomerase; closed loop confor 1e-124
3th6_A249 Triosephosphate isomerase; alpha/beta barrel, embr 1e-123
2i9e_A259 Triosephosphate isomerase; 2.00A {Tenebrio molitor 1e-123
2vxn_A251 Triosephosphate isomerase; fatty acid biosynthesis 1e-121
1o5x_A248 TIM, triosephosphate isomerase; 2- phosphoglycerat 1e-121
2yc6_A257 Triosephosphate isomerase; glycolysis; HET: PGA; 1 1e-121
3qst_A255 Triosephosphate isomerase, putative; TIM barrel; 1 1e-120
3krs_A271 Triosephosphate isomerase; ssgcid, SBRI, emerald b 1e-118
2j27_A250 Triosephosphate isomerase glycosomal; TIM, 2PG, LO 1e-118
1m6j_A261 TIM, TPI, triosephosphate isomerase; asymmetry, mo 1e-116
1tre_A255 Triosephosphate isomerase; intramolecular oxidored 1e-112
2v5b_A244 Triosephosphate isomerase; TIM, unfolding, monotct 1e-112
1ney_A247 TIM, triosephosphate isomerase; yeast, DHAP, dihyd 1e-111
1b9b_A255 TIM, protein (triosephosphate isomerase); thermoph 1e-104
1aw2_A256 Triosephosphate isomerase; psychrophilic, vibrio m 1e-101
2jgq_A233 Triosephosphate isomerase; glycolysis, pentose shu 1e-101
3m9y_A254 Triosephosphate isomerase; TIM barrel, glycolysis, 1e-100
3kxq_A275 Triosephosphate isomerase; ssgcid, NIH, niaid, SBR 2e-96
1yya_A250 Triosephosphate isomerase; riken structural genomi 3e-94
4g1k_A272 Triosephosphate isomerase; structural genomics, se 9e-93
2btm_A252 TIM, protein (triosephosphate isomerase); thermoph 3e-92
3ta6_A267 Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba 7e-91
3s6d_A310 Putative triosephosphate isomerase; seattle struct 3e-88
1w0m_A226 TIM, triosephosphate isomerase; glycolysis, glucon 6e-76
2h6r_A219 Triosephosphate isomerase; beta-alpha barrel; 2.30 3e-70
1hg3_A225 Triosephosphate isomerase; thermostability, tetram 6e-69
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 Length = 275 Back     alignment and structure
 Score =  353 bits (909), Expect = e-124
 Identities = 109/215 (50%), Positives = 138/215 (64%), Gaps = 2/215 (0%)

Query: 30  SHLRLVSSRRPRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVV 89
           S+           S     +    KFFVGGNWK NG   S+  +V+ LN +   + VDVV
Sbjct: 2   SYYHHHHHHLESTSLYKAGLTR--KFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVV 59

Query: 90  VAPPFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRH 149
           VAPP  Y+   K+ L   + +AAQN +    GAFTGEIS   +KD+G +WV+LGHSERRH
Sbjct: 60  VAPPAPYLAYAKSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRH 119

Query: 150 VIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV 209
           V GE D  I +K  +AL  G+ V+ CIGE+L+EREAG T DV F+QL+A  D   SW+N+
Sbjct: 120 VFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENI 179

Query: 210 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNM 244
           VIAYEPVWAIGTGK A+ EQAQEVH  +R +LK  
Sbjct: 180 VIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEK 214
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... Length = 248 Back     alignment and structure
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus} Length = 249 Back     alignment and structure
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} Length = 259 Back     alignment and structure
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* Length = 251 Back     alignment and structure
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A* Length = 248 Back     alignment and structure
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A Length = 257 Back     alignment and structure
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A Length = 255 Back     alignment and structure
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II} Length = 271 Back     alignment and structure
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ... Length = 250 Back     alignment and structure
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 Length = 261 Back     alignment and structure
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A Length = 255 Back     alignment and structure
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} Length = 244 Back     alignment and structure
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* Length = 247 Back     alignment and structure
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 Length = 255 Back     alignment and structure
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A Length = 256 Back     alignment and structure
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} Length = 233 Back     alignment and structure
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} Length = 254 Back     alignment and structure
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae} Length = 275 Back     alignment and structure
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus} Length = 250 Back     alignment and structure
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis} Length = 272 Back     alignment and structure
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A Length = 252 Back     alignment and structure
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} PDB: 3tao_A* 3gvg_A Length = 267 Back     alignment and structure
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS} Length = 310 Back     alignment and structure
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 Length = 226 Back     alignment and structure
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} Length = 219 Back     alignment and structure
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 Length = 225 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
2vxn_A251 Triosephosphate isomerase; fatty acid biosynthesis 100.0
4g1k_A272 Triosephosphate isomerase; structural genomics, se 100.0
1r2r_A248 TIM, triosephosphate isomerase; closed loop confor 100.0
1ney_A247 TIM, triosephosphate isomerase; yeast, DHAP, dihyd 100.0
1o5x_A248 TIM, triosephosphate isomerase; 2- phosphoglycerat 100.0
3th6_A249 Triosephosphate isomerase; alpha/beta barrel, embr 100.0
3krs_A271 Triosephosphate isomerase; ssgcid, SBRI, emerald b 100.0
3qst_A255 Triosephosphate isomerase, putative; TIM barrel; 1 100.0
3ta6_A267 Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba 100.0
2j27_A250 Triosephosphate isomerase glycosomal; TIM, 2PG, LO 100.0
1mo0_A275 TIM, triosephosphate isomerase; structural genomic 100.0
1yya_A250 Triosephosphate isomerase; riken structural genomi 100.0
3kxq_A275 Triosephosphate isomerase; ssgcid, NIH, niaid, SBR 100.0
2i9e_A259 Triosephosphate isomerase; 2.00A {Tenebrio molitor 100.0
1b9b_A255 TIM, protein (triosephosphate isomerase); thermoph 100.0
3m9y_A254 Triosephosphate isomerase; TIM barrel, glycolysis, 100.0
1tre_A255 Triosephosphate isomerase; intramolecular oxidored 100.0
2yc6_A257 Triosephosphate isomerase; glycolysis; HET: PGA; 1 100.0
1aw2_A256 Triosephosphate isomerase; psychrophilic, vibrio m 100.0
2btm_A252 TIM, protein (triosephosphate isomerase); thermoph 100.0
1m6j_A261 TIM, TPI, triosephosphate isomerase; asymmetry, mo 100.0
3s6d_A310 Putative triosephosphate isomerase; seattle struct 100.0
2v5b_A244 Triosephosphate isomerase; TIM, unfolding, monotct 100.0
2jgq_A233 Triosephosphate isomerase; glycolysis, pentose shu 100.0
1hg3_A225 Triosephosphate isomerase; thermostability, tetram 100.0
1w0m_A226 TIM, triosephosphate isomerase; glycolysis, glucon 100.0
2h6r_A219 Triosephosphate isomerase; beta-alpha barrel; 2.30 100.0
2p10_A286 MLL9387 protein; putative phosphonopyruvate hydrol 98.95
1i4n_A251 Indole-3-glycerol phosphate synthase; thermostable 94.72
1wv2_A265 Thiazole moeity, thiazole biosynthesis protein THI 87.84
3tha_A252 Tryptophan synthase alpha chain; structural genomi 83.59
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* Back     alignment and structure
Probab=100.00  E-value=1e-77  Score=543.03  Aligned_cols=210  Identities=50%  Similarity=0.799  Sum_probs=198.1

Q ss_pred             hhhcCcceEEeecccccCHHHHHHHHHHHhhccccCCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCccccccc
Q 024925           49 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEI  127 (260)
Q Consensus        49 m~~~rk~~IigNWKmn~t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEI  127 (260)
                      |.+||+|||+||||||++.+++.+|++.+.....+.+++|+|||||++|..+.+.+. ++|.+|||||+ .+.|||||||
T Consensus         1 ~~~mr~~~i~gNwKmn~~~~~~~~l~~~l~~~~~~~~vev~v~Pp~~~L~~v~~~~~~~~i~vgAQn~~-~~~GA~TGEi   79 (251)
T 2vxn_A            1 MSAKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAQNAI-AKSGAFTGEV   79 (251)
T ss_dssp             --CCCCCEEEEECCSCCCHHHHHHHHHHHHHSCCCSCCEEEEECCGGGHHHHHHHCCCTTEEEEESCCB-SSCSSCTTCC
T ss_pred             CCCCCCCEEEEecccccCHHHHHHHHHHHHhhccccCceEEEECcHHHHHHHHHHhcCCCceEeecccC-CCCCCCcCcC
Confidence            446899999999999999999999999997643335799999999999999999886 78999999999 9999999999


Q ss_pred             CHHHHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCC--C
Q 024925          128 SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--S  205 (260)
Q Consensus       128 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~--~  205 (260)
                      |++||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++||+|+|.++|.+||++.++.++  +
T Consensus        80 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~  159 (251)
T 2vxn_A           80 SMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDA  159 (251)
T ss_dssp             BHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCTGG
T ss_pred             CHHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999885  5


Q ss_pred             CCceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925          206 WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG  259 (260)
Q Consensus       206 ~~~iiIAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~  259 (260)
                      +++++|||||+||||||++||||+||++|++||++|++.||++++.+..|.|.|
T Consensus       160 ~~~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGG  213 (251)
T 2vxn_A          160 WNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGG  213 (251)
T ss_dssp             GGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEES
T ss_pred             hCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcC
Confidence            789999999999999999999999999999999999999999988889999877
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis} Back     alignment and structure
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... Back     alignment and structure
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* Back     alignment and structure
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A* Back     alignment and structure
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus} Back     alignment and structure
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A Back     alignment and structure
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A Back     alignment and structure
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ... Back     alignment and structure
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 Back     alignment and structure
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus} Back     alignment and structure
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae} Back     alignment and structure
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} Back     alignment and structure
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 Back     alignment and structure
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A* Back     alignment and structure
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A Back     alignment and structure
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A Back     alignment and structure
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A Back     alignment and structure
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A Back     alignment and structure
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 Back     alignment and structure
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS} Back     alignment and structure
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} Back     alignment and structure
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} Back     alignment and structure
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 Back     alignment and structure
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 Back     alignment and structure
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 Back     alignment and structure
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A Back     alignment and structure
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Back     alignment and structure
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 260
d1r2ra_246 c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Or 2e-46
d1b9ba_252 c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga 5e-45
d1mo0a_257 c.1.1.1 (A:) Triosephosphate isomerase {Nematode ( 2e-43
d1neya_247 c.1.1.1 (A:) Triosephosphate isomerase {Baker's ye 7e-42
d1n55a_249 c.1.1.1 (A:) Triosephosphate isomerase {Leishmania 8e-40
d1o5xa_246 c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium 6e-39
d2btma_251 c.1.1.1 (A:) Triosephosphate isomerase {Bacillus s 3e-37
d1m6ja_260 c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba 6e-37
d1kv5a_249 c.1.1.1 (A:) Triosephosphate isomerase {Trypanosom 5e-36
d1aw1a_255 c.1.1.1 (A:) Triosephosphate isomerase {Vibrio mar 8e-36
d1trea_255 c.1.1.1 (A:) Triosephosphate isomerase {Escherichi 3e-34
d1w0ma_226 c.1.1.1 (A:) Triosephosphate isomerase {Thermoprot 2e-25
d1hg3a_224 c.1.1.1 (A:) Triosephosphate isomerase {Archaeon P 3e-18
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 246 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  153 bits (387), Expect = 2e-46
 Identities = 120/193 (62%), Positives = 142/193 (73%)

Query: 52  SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLTDRIEIA 111
           S KFFVGGNWK NG K+++ +L++ LN AK+ AD +VV APP  YID  +  L  +I +A
Sbjct: 1   SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVA 60

Query: 112 AQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLG 171
           AQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+ALSEGLG
Sbjct: 61  AQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLG 120

Query: 172 VIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQ 231
           VIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+QAQ
Sbjct: 121 VIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQ 180

Query: 232 EVHAALRDWLKNM 244
           EVH  LR WLK+ 
Sbjct: 181 EVHEKLRGWLKSN 193
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} Length = 252 Back     information, alignment and structure
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 257 Back     information, alignment and structure
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 247 Back     information, alignment and structure
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} Length = 249 Back     information, alignment and structure
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} Length = 246 Back     information, alignment and structure
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} Length = 251 Back     information, alignment and structure
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]} Length = 260 Back     information, alignment and structure
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} Length = 249 Back     information, alignment and structure
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]} Length = 255 Back     information, alignment and structure
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} Length = 255 Back     information, alignment and structure
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Length = 226 Back     information, alignment and structure
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 224 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d1neya_247 Triosephosphate isomerase {Baker's yeast (Saccharo 100.0
d1r2ra_246 Triosephosphate isomerase {Rabbit (Oryctolagus cun 100.0
d1b9ba_252 Triosephosphate isomerase {Thermotoga maritima [Ta 100.0
d1mo0a_257 Triosephosphate isomerase {Nematode (Caenorhabditi 100.0
d1o5xa_246 Triosephosphate isomerase {Plasmodium falciparum [ 100.0
d1n55a_249 Triosephosphate isomerase {Leishmania mexicana [Ta 100.0
d1trea_255 Triosephosphate isomerase {Escherichia coli [TaxId 100.0
d2btma_251 Triosephosphate isomerase {Bacillus stearothermoph 100.0
d1kv5a_249 Triosephosphate isomerase {Trypanosoma brucei [Tax 100.0
d1aw1a_255 Triosephosphate isomerase {Vibrio marinus [TaxId: 100.0
d1m6ja_260 Triosephosphate isomerase {Entamoeba histolytica [ 100.0
d1hg3a_224 Triosephosphate isomerase {Archaeon Pyrococcus woe 100.0
d1w0ma_226 Triosephosphate isomerase {Thermoproteus tenax [Ta 100.0
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-75  Score=525.53  Aligned_cols=208  Identities=48%  Similarity=0.829  Sum_probs=199.6

Q ss_pred             cCcceEEeecccccCHHHHHHHHHHHhhccccCCceEEEcCCcccHHHHHHHcC-CCceEeeeccccCCCcccccccCHH
Q 024925           52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDVVVAPPFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVE  130 (260)
Q Consensus        52 ~rk~~IigNWKmn~t~~~~~~l~~~l~~~~~~~~v~VvvaPp~~~L~~v~~~~~-~~i~vgAQnv~~~~~GA~TGEISa~  130 (260)
                      .||+||+||||||++.+++.+|++.++....+.+++|+|||||+||..+.+.+. +++.||||||++.+.||||||||++
T Consensus         1 sRk~~IagNWKMN~~~~~~~~~~~~l~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~~i~iGAQn~~~~~~GA~TGeiSa~   80 (247)
T d1neya_           1 ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVD   80 (247)
T ss_dssp             CCCEEEEEECCBCCCHHHHHHHHHHHHHSCCCTTEEEEEECCGGGHHHHHHHCCCTTEEEEESCCCSSSSBSCTTCCCHH
T ss_pred             CCCcEEEEeccccCCHHHHHHHHHHHHccCCCCCceEEEECCHHHHHHHHHHHhhccccccccccccccccchhhhhhHH
Confidence            489999999999999999999999998765557899999999999999999887 7899999999999999999999999


Q ss_pred             HHHhcCCCEEEeeecccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCChHHHHHHHHHHHHhcCCCCCceE
Q 024925          131 QLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVV  210 (260)
Q Consensus       131 mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~gL~pIlCIGE~leere~g~~~~vl~~Ql~~~l~~i~~~~~ii  210 (260)
                      ||+|+||+||||||||||.+|+|||+.|++|++.|+++||+||+||||++++|++|++.+++.+||...++.++..++++
T Consensus        81 mLkd~G~~yviIGHSERR~~f~Etd~~i~~K~~~al~~gl~pIlCVGEtle~r~~~~~~~~~~~Ql~~~l~~~~~~~~ii  160 (247)
T d1neya_          81 QIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVV  160 (247)
T ss_dssp             HHHHTTCCEEEESCHHHHHTTCCCHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHCCCCTTEE
T ss_pred             HHHhhccchhhhcchhhhhhccchHHHHHHHHHHHhhcCceEEEEecchhhhhccccchhhhHHHHHhhhcccccccceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 024925          211 IAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG  259 (260)
Q Consensus       211 IAYEPvWAIGTG~~aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~  259 (260)
                      |||||+||||||++|+|++|+++|++||+++++.|+...+.+..|.|-|
T Consensus       161 IAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~iLYGG  209 (247)
T d1neya_         161 VAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGG  209 (247)
T ss_dssp             EEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEES
T ss_pred             EEecchhcccCCcccChhhhhhhhHHHHHHHHHhhhhhhcccCcEEEeC
Confidence            9999999999999999999999999999999999999988888898877
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]} Back     information, alignment and structure
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]} Back     information, alignment and structure
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Back     information, alignment and structure